CmoCh07G013180.1 (mRNA) Cucurbita moschata (Rifu)

Overview
NameCmoCh07G013180.1
TypemRNA
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description60S ribosomal L35a-1-like protein
LocationCmo_Chr07 : 7383557 .. 7387025 (+)
Sequence length785
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGATTTAGCTATCAATCACTTATTTGAAGTGTTTAAGTGTCATGATGCAACCGAGAAGAATGTTGCATCATTTATCACACCAAGAATAGCAGGCAAGATTGTCGAGTTAGGTAAGAGATTGGTAGATGGGGTCATAGACCATAACCTTAAAAGTTAGGGTTCTGACGTGAGTTTTGACCTGCTATTTTGGGGTTAAGTTTGTATAAGTTATATGTGAGAGCTTACAAAATTTGGTGTTAATCGGACGTCAGATTATTAGGATTTATATCATAAAACCTCGTAGTTATTATTAGGTTTTTAATAATAATATTGATTGTTTATTTGTAGTATAATGTTACCTAAGGTATGAAAATCTAAAGTTCTTATAATTTTGAACTGTATATGTCTGATATACACGAGGATTATATTGAAGAAATAACCTAAAATGTTATAGCATACGAATAATACTCGGTGGCTTATCTCGATAACACTATTGATGCAACCCACATTTTAATTATTTTAAATAATTTGATCCAAATTATTTCATTGACCACACGTAAGTGGGGATATGTTATACAATCAGTTTGTATAAGACTCTGTCATGAAATATTTAATCTTTCTTTATAAATTTGTTAACCGAGAAAGTTTATATTTCACAAAATGATTATATGCGACCTAATCTTAACATCGAGTGAATTATGAGATTTTGCCCATAAAACTTTTATTTAAGTTGCATAGGTGAAAATAACTTTTATAATCGATTCTTGACCTTTAAAATATATAACATTTTAAATTTAAATTAATAGTGTATTTTGATATTACCTCATCAGCGACGGTTAATTTTTGATTTCTAACGTCCATTTCTACCGTTTTCATTTGAAATTAAATTAAATTACAAGTCTAATTTCTAAATTTTATTTCTTTAACAAATTTATACTTATATTAAAAAAATATTTAATAAATTCCTAAGCTTAAAATTTAAATAGTTAAAACTCTTTTGGAGAAGTTGAAAAAAAATAATAAAAAAATAAACATCGTATTACCCGACAGAGAAACCCTAGAAGTGCTTCAAATCATTTTGGCCCTCAACCTCCACTATAAAAGCTTCCTCTTCTACTGGCGCTCGCCTTCTCCGCCGAACACAGCTCCATCTTCCGCACTTCAACCTCCAAATCGAAGGTGATTATTCCTCTAAGATTTCCTTTTTTTTTCCTTCTCCACAGCATTTACATTTGACTACGGATCTCAATTCTTAGTTTCTTGCCTTGCAGTGGTCGTTTTCTTGAACCTTAGACTGCGGCAGCCATGGTGAAGGGAAGCAAGGGAGAAAGAGTCAGGTCTCTTTCCTGAGCCCTAGATCGACCTGTTTTGATTGTTTGATTTTATTTGTTCTTCACAATGCTGTGCTAATCTTTTGTGTTTGTTTCAGACTCTACGTCAGAGGAACTGTCCTTGGCTACAAGAGGTAATTGGTTTTTCTTTGATAATGGAATAATCGTTATCTTTTAGTGATGCGTAGTATGTGATTGGAAAACAGAAAATGGTGCAATAGAGTACTCTTTAATGTGGTGCGATGCCGAGAAAATGAACGAAACTGGAATTGAAATATGCGTTAGGTTTAGTTGTAAGTTACTGAGGGATGTTGTAGTTTGTGAGGGAGCTAAGAATGTGCGGTTGGTGTTTAGGTCGAAGTCAAACCAGTATCCAAGAACATCACTGATCCAGATTGAAGGTGTGAATACCAAGGAAGAGGTCGCGTGGTATGCTGGAAAACGCTTGGCATACATTTACAAGGCCAAAGTGAAGCAAAATGGAACTCACTATCGATGCATTTGGGGCAAAGTATCCAGGGCTCATGGTAACAGTGGCATTGTTCGAGCTAAGTTCAAGTCAAACTTGCCCCCAAAATCCATGGTAAAATGGAATGATTTTGCTGTTACTTCATATACTTTCAAGGATTGTAAATTGGGGATGTGTTTTCTGATTGAATTACTGGACAATTTTGCAGGGTGATAAAGTTAGGGTATTTATGTACCCCAGCAATATTTGAGGTACACACCCGGCTTCCATTGTTTTAGTCTTTAAAATTGTTAGTTACCATTTGCATTTAGTGTTGTATGAAGGAAAAAATCATCCATGCTGTTCATCTTAATCATGTGATAATAACACAGCATAACTTGATATTGCATACTTCGTTGCTATTCATTTCCGACATTCAATTTTTGTTTGCACTGTTAATAGTTCGTTTGTGACATAATCCTGTGATCATTGTGTCACTTTAATTTGTACTTCATTAACTTGCTGGACTATGTTCCTCAATCTTCGTTTTTCTTTTCTGTTGTTGGATGTTGTCATCTTCCTTTGTCTGTTTATTCCAAAATGATTATATGTGGTTTGTTCTGACTCCTCAATCTCCAAATGGAGCATCATATTGCAATCAGAAATTCGTGAGGCATCTTTATGCGTTCTTCCCATAGTGTAGTGCTTCTTTTTTTATAGAGTTGAAGTACTTTGATGTAGAATGTTTTAAGAATGAAGTTTGTTTCAATTTTGAACTAAAAAAATGTTTGTTTTAATTTTTATGTTCATCATGTTTTCAACTTCTATGTTTTTATCCAATATTCTATCCTGTTACATAGAGTAGGCTCGGGTCGAACATTCTTTTGGAATCCATTCCATCAATCAATAAAATAGATACTCAATGTCTTTGTATAAACGAGACACTCTATCACATTTGGTCCTCACTGTAGGAATCCTAGTTTTACTTCCAGACCGATGTATAAGTTTTTTTGTGAGTCCATTTCCTCACAATTCACTTATTCCAGTCCCACCACTTACAGATCAGATGTCTTTCACTCATCTATTAGTACCTTTGTAGCCCTGGTTCTATCCACCTTTGTGTCTCCTACAGTTCTAAGTTGCACTTCATATGAACTGTTCGAAGCCAGATTCGATTCTCAGTTGTCTTGGATCAATCTATAGCTTTGTCTACTCATTTCTTGAATAATAACTTTATCTTTTATTTTTCCTCCCACGCATATCTTTCAACATCACGAATCAAGCTGTCCATGAAATGTAGATTCATTTCCCGTACTGATTTTAGTTCATTTGCGTAATTGTCTGTGTCGTGTTCGATCCATATTAGAAATCCGTTTGTGCATTTAGTCACGTCTTCTCTTCAACGCATTTATCTATGATGATTTTGAAACCCCGTTTCTGATATCTCTCCTTTTGTTTTATATTTTGTTTGCAGTTCCTCTGATGAGCTAGCTAGAGGTCAGGTTTCATTTCTTTGTGGACTTGGATGGAACAATATTTTTCTTTTACTTTCTTCCTTCTGGACCCAATGTTTAGGTGATGATGTTTTCATGTAAAACTTGACTAAATTTTCGACGTTCATTATGGAATATTACTTTCAATTTTGACCGAGCTTCATATTAAGGTTGAGTTAAAATGGTAGTCACTTAAATTTAGACGGATATTTG

mRNA sequence

ATGATTGATTTAGCTATCAATCACTTATTTGAAGTGTTTAAGTGTCATGATGCAACCGAGAAGAATGTTGCATCATTTATCACACCAAGAATAGCAGGCAAGATTGTCGAGTTAGGTAAGAGATTGCTTCCTCTTCTACTGGCGCTCGCCTTCTCCGCCGAACACAGCTCCATCTTCCGCACTTCAACCTCCAAATCGAAGACTGCGGCAGCCATGGTGAAGGGAAGCAAGGGAGAAAGAGTCAGACTCTACGTCAGAGGAACTGTCCTTGGCTACAAGAGGTCGAAGTCAAACCAGTATCCAAGAACATCACTGATCCAGATTGAAGGTGTGAATACCAAGGAAGAGGTCGCGTGGTATGCTGGAAAACGCTTGGCATACATTTACAAGGCCAAAGTGAAGCAAAATGGAACTCACTATCGATGCATTTGGGGCAAAGTATCCAGGGCTCATGGTAACAGTGGCATTGTTCGAGCTAAGTTCAAGTCAAACTTGCCCCCAAAATCCATGGGTGATAAAGTTAGGGTATTTATGTACCCCAGCAATATTTGAGTTCCTCTGATGAGCTAGCTAGAGGTCAGGTTTCATTTCTTTGTGGACTTGGATGGAACAATATTTTTCTTTTACTTTCTTCCTTCTGGACCCAATGTTTAGGTGATGATGTTTTCATGTAAAACTTGACTAAATTTTCGACGTTCATTATGGAATATTACTTTCAATTTTGACCGAGCTTCATATTAAGGTTGAGTTAAAATGGTAGTCACTTAAATTTAGACGGATATTTG

Coding sequence (CDS)

ATGATTGATTTAGCTATCAATCACTTATTTGAAGTGTTTAAGTGTCATGATGCAACCGAGAAGAATGTTGCATCATTTATCACACCAAGAATAGCAGGCAAGATTGTCGAGTTAGGTAAGAGATTGCTTCCTCTTCTACTGGCGCTCGCCTTCTCCGCCGAACACAGCTCCATCTTCCGCACTTCAACCTCCAAATCGAAGACTGCGGCAGCCATGGTGAAGGGAAGCAAGGGAGAAAGAGTCAGACTCTACGTCAGAGGAACTGTCCTTGGCTACAAGAGGTCGAAGTCAAACCAGTATCCAAGAACATCACTGATCCAGATTGAAGGTGTGAATACCAAGGAAGAGGTCGCGTGGTATGCTGGAAAACGCTTGGCATACATTTACAAGGCCAAAGTGAAGCAAAATGGAACTCACTATCGATGCATTTGGGGCAAAGTATCCAGGGCTCATGGTAACAGTGGCATTGTTCGAGCTAAGTTCAAGTCAAACTTGCCCCCAAAATCCATGGGTGATAAAGTTAGGGTATTTATGTACCCCAGCAATATTTGA
Homology
[Close]
BLAST of CmoCh07G013180.1 vs. Swiss-Prot
Match: R35A3_ARATH (60S ribosomal protein L35a-3 OS=Arabidopsis thaliana GN=RPL35AC PE=3 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 1.3e-51
Identity = 94/112 (83.93%), Postives = 104/112 (92.86%), Query Frame = 1 

Query: 72  MVKGSKGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKA 131
           MVKG +GERVRLYVRGT+LGYKRSKSNQYP TSL+QIEGVNT+EEV WY GKR+AYIYKA
Sbjct: 1   MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGKRMAYIYKA 60

Query: 132 KVKQNGTHYRCIWGKVSRAHGNSGIVRAKFKSNLPPKSMGDKVRVFMYPSNI 184
           K K+NG+HYRCIWGKV+R HGNSG+VRAKF SNLPPKSMG +VRVFMYPSNI
Sbjct: 61  KTKKNGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKSMGSRVRVFMYPSNI 112

[Close]
BLAST of CmoCh07G013180.1 vs. Swiss-Prot
Match: R35A1_ARATH (60S ribosomal protein L35a-1 OS=Arabidopsis thaliana GN=RPL35AA PE=3 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 1.3e-51
Identity = 93/112 (83.04%), Postives = 104/112 (92.86%), Query Frame = 1 

Query: 72  MVKGSKGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKA 131
           MVKG +GERVRLYVRGT+LGYKRSKSNQYP TSL+Q+EGVNT EEV+WY GKR+AYIYKA
Sbjct: 1   MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLVQVEGVNTTEEVSWYKGKRMAYIYKA 60

Query: 132 KVKQNGTHYRCIWGKVSRAHGNSGIVRAKFKSNLPPKSMGDKVRVFMYPSNI 184
           K K+NG+HYRCIWGKV+R HGNSG+VRAKF SNLPPKSMG +VRVFMYPSNI
Sbjct: 61  KTKKNGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKSMGSRVRVFMYPSNI 112

[Close]
BLAST of CmoCh07G013180.1 vs. Swiss-Prot
Match: R35A2_ARATH (60S ribosomal protein L35a-2 OS=Arabidopsis thaliana GN=RPL35AB PE=3 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 1.4e-50
Identity = 94/111 (84.68%), Postives = 103/111 (92.79%), Query Frame = 1 

Query: 73  VKGSKGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKAK 132
           +KG +GERVRLYVRGTVLGYKRSKSNQYP TSLIQIEGVNT+EEV WY GKRLAYIYKAK
Sbjct: 1   MKGRQGERVRLYVRGTVLGYKRSKSNQYPNTSLIQIEGVNTQEEVNWYKGKRLAYIYKAK 60

Query: 133 VKQNGTHYRCIWGKVSRAHGNSGIVRAKFKSNLPPKSMGDKVRVFMYPSNI 184
            K+NG+HYRCIWGKV+R HGNSG+VR+KF SNLPPKSMG +VRVFMYPSNI
Sbjct: 61  TKKNGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARVRVFMYPSNI 111

[Close]
BLAST of CmoCh07G013180.1 vs. Swiss-Prot
Match: R35A4_ARATH (60S ribosomal protein L35a-4 OS=Arabidopsis thaliana GN=RPL35AD PE=3 SV=2)

HSP 1 Score: 200.3 bits (508), Expect = 1.8e-50
Identity = 93/111 (83.78%), Postives = 103/111 (92.79%), Query Frame = 1 

Query: 73  VKGSKGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKAK 132
           +KG +GERVRLYVRGTVLGYKRSKSNQYP TSL+QIEGVNT+EEV WY GKRLAYIYKAK
Sbjct: 1   MKGRQGERVRLYVRGTVLGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGKRLAYIYKAK 60

Query: 133 VKQNGTHYRCIWGKVSRAHGNSGIVRAKFKSNLPPKSMGDKVRVFMYPSNI 184
            K+NG+HYRCIWGKV+R HGNSG+VR+KF SNLPPKSMG +VRVFMYPSNI
Sbjct: 61  TKKNGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARVRVFMYPSNI 111

[Close]
BLAST of CmoCh07G013180.1 vs. Swiss-Prot
Match: RL33B_YEAST (60S ribosomal protein L33-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPL33B PE=1 SV=2)

HSP 1 Score: 124.4 bits (311), Expect = 1.3e-27
Identity = 58/105 (55.24%), Postives = 76/105 (72.38%), Query Frame = 1 

Query: 79  ERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKAKVKQNGT 138
           E  RLYV+G  L Y+RSK    P  SLI+IEGV T +E  +Y GKR+AY+Y+A  +  G+
Sbjct: 3   ESHRLYVKGKHLSYQRSKRVNNPNVSLIKIEGVATPQEAQFYLGKRIAYVYRASKEVRGS 62

Query: 139 HYRCIWGKVSRAHGNSGIVRAKFKSNLPPKSMGDKVRVFMYPSNI 184
             R +WGKV+R HGNSG+VRA F++NLP K+ G  VR+F+YPSNI
Sbjct: 63  KIRVMWGKVTRTHGNSGVVRATFRNNLPAKTFGASVRIFLYPSNI 107

[Close]
BLAST of CmoCh07G013180.1 vs. TrEMBL
Match: A0A0D2VTL7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G278900 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 2.8e-53
Identity = 101/112 (90.18%), Postives = 109/112 (97.32%), Query Frame = 1 

Query: 72  MVKGSKGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKA 131
           MVKG +GERVRLYVRGT+LGYKRSKSNQYP TSLIQIEGVNTKEEVAWYAGKR+AYIYKA
Sbjct: 1   MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEEVAWYAGKRMAYIYKA 60

Query: 132 KVKQNGTHYRCIWGKVSRAHGNSGIVRAKFKSNLPPKSMGDKVRVFMYPSNI 184
           KVK+NG+HYRCIWGKV+R HGNSG+VRAKFKSNLPPKSMGD+VRVFMYPSNI
Sbjct: 61  KVKKNGSHYRCIWGKVTRPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 112

[Close]
BLAST of CmoCh07G013180.1 vs. TrEMBL
Match: A0A0B0N9V3_GOSAR (60S ribosomal L35a-1-like protein OS=Gossypium arboreum GN=F383_12852 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 2.8e-53
Identity = 101/112 (90.18%), Postives = 109/112 (97.32%), Query Frame = 1 

Query: 72  MVKGSKGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKA 131
           MVKG +GERVRLYVRGT+LGYKRSKSNQYP TSLIQIEGVNTKEEVAWYAGKR+AYIYKA
Sbjct: 51  MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEEVAWYAGKRMAYIYKA 110

Query: 132 KVKQNGTHYRCIWGKVSRAHGNSGIVRAKFKSNLPPKSMGDKVRVFMYPSNI 184
           KVK+NG+HYRCIWGKV+R HGNSG+VRAKFKSNLPPKSMGD+VRVFMYPSNI
Sbjct: 111 KVKKNGSHYRCIWGKVTRPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 162

[Close]
BLAST of CmoCh07G013180.1 vs. TrEMBL
Match: I3NML8_HEVBR (60S ribosomal protein L35aA OS=Hevea brasiliensis GN=RPL35aA PE=2 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 2.8e-53
Identity = 101/112 (90.18%), Postives = 109/112 (97.32%), Query Frame = 1 

Query: 72  MVKGSKGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKA 131
           MVKG +GERVRLYVRGT+LGYKRSKSNQYP TSLIQIEGVNTKEEVAWYAGKR+AYIYKA
Sbjct: 1   MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEEVAWYAGKRMAYIYKA 60

Query: 132 KVKQNGTHYRCIWGKVSRAHGNSGIVRAKFKSNLPPKSMGDKVRVFMYPSNI 184
           KVK+NG+HYRCIWGKV+R HGNSG+VRAKFKSNLPPKSMGD+VRVFMYPSNI
Sbjct: 61  KVKKNGSHYRCIWGKVTRPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 112

[Close]
BLAST of CmoCh07G013180.1 vs. TrEMBL
Match: A0A061ESF1_THECC (Ribosomal protein L35Ae family protein isoform 1 OS=Theobroma cacao GN=TCM_021780 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 6.1e-53
Identity = 101/112 (90.18%), Postives = 108/112 (96.43%), Query Frame = 1 

Query: 72  MVKGSKGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKA 131
           MVKG +GERVRLYVRGT+LGYKRSKSNQYP TSLIQIEGVN+KEEV WY GKR+AYIYKA
Sbjct: 1   MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLIQIEGVNSKEEVGWYCGKRMAYIYKA 60

Query: 132 KVKQNGTHYRCIWGKVSRAHGNSGIVRAKFKSNLPPKSMGDKVRVFMYPSNI 184
           KVK+NG+HYRCIWGKV+RAHGNSGIVRAKFKSNLPPKSMGDKVRVFMYPSNI
Sbjct: 61  KVKKNGSHYRCIWGKVTRAHGNSGIVRAKFKSNLPPKSMGDKVRVFMYPSNI 112

[Close]
BLAST of CmoCh07G013180.1 vs. TrEMBL
Match: S8D037_9LAMI (Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_02083 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 8.0e-53
Identity = 100/115 (86.96%), Postives = 110/115 (95.65%), Query Frame = 1 

Query: 69  AAAMVKGSKGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYI 128
           ++AMVKG +GER+RLYVRGT+LGYKRSKSNQYP TSLIQIEGVNT+EEVAWY GKR+AYI
Sbjct: 1   SSAMVKGRQGERIRLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTQEEVAWYLGKRMAYI 60

Query: 129 YKAKVKQNGTHYRCIWGKVSRAHGNSGIVRAKFKSNLPPKSMGDKVRVFMYPSNI 184
           YKAKVK+NGTHYRCIWGKV+R HGNSG+VRAKFKSNLPPKSMG KVRVFMYPSNI
Sbjct: 61  YKAKVKKNGTHYRCIWGKVTRPHGNSGVVRAKFKSNLPPKSMGSKVRVFMYPSNI 115

[Close]
BLAST of CmoCh07G013180.1 vs. TAIR10
Match: AT1G07070.1 (AT1G07070.1 Ribosomal protein L35Ae family protein)

HSP 1 Score: 204.1 bits (518), Expect = 7.2e-53
Identity = 93/112 (83.04%), Postives = 104/112 (92.86%), Query Frame = 1 

Query: 72  MVKGSKGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKA 131
           MVKG +GERVRLYVRGT+LGYKRSKSNQYP TSL+Q+EGVNT EEV+WY GKR+AYIYKA
Sbjct: 1   MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLVQVEGVNTTEEVSWYKGKRMAYIYKA 60

Query: 132 KVKQNGTHYRCIWGKVSRAHGNSGIVRAKFKSNLPPKSMGDKVRVFMYPSNI 184
           K K+NG+HYRCIWGKV+R HGNSG+VRAKF SNLPPKSMG +VRVFMYPSNI
Sbjct: 61  KTKKNGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKSMGSRVRVFMYPSNI 112

[Close]
BLAST of CmoCh07G013180.1 vs. TAIR10
Match: AT1G74270.1 (AT1G74270.1 Ribosomal protein L35Ae family protein)

HSP 1 Score: 204.1 bits (518), Expect = 7.2e-53
Identity = 94/112 (83.93%), Postives = 104/112 (92.86%), Query Frame = 1 

Query: 72  MVKGSKGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKA 131
           MVKG +GERVRLYVRGT+LGYKRSKSNQYP TSL+QIEGVNT+EEV WY GKR+AYIYKA
Sbjct: 1   MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGKRMAYIYKA 60

Query: 132 KVKQNGTHYRCIWGKVSRAHGNSGIVRAKFKSNLPPKSMGDKVRVFMYPSNI 184
           K K+NG+HYRCIWGKV+R HGNSG+VRAKF SNLPPKSMG +VRVFMYPSNI
Sbjct: 61  KTKKNGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKSMGSRVRVFMYPSNI 112

[Close]
BLAST of CmoCh07G013180.1 vs. TAIR10
Match: AT1G41880.1 (AT1G41880.1 Ribosomal protein L35Ae family protein)

HSP 1 Score: 200.7 bits (509), Expect = 7.9e-52
Identity = 94/111 (84.68%), Postives = 103/111 (92.79%), Query Frame = 1 

Query: 73  VKGSKGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKAK 132
           +KG +GERVRLYVRGTVLGYKRSKSNQYP TSLIQIEGVNT+EEV WY GKRLAYIYKAK
Sbjct: 1   MKGRQGERVRLYVRGTVLGYKRSKSNQYPNTSLIQIEGVNTQEEVNWYKGKRLAYIYKAK 60

Query: 133 VKQNGTHYRCIWGKVSRAHGNSGIVRAKFKSNLPPKSMGDKVRVFMYPSNI 184
            K+NG+HYRCIWGKV+R HGNSG+VR+KF SNLPPKSMG +VRVFMYPSNI
Sbjct: 61  TKKNGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARVRVFMYPSNI 111

[Close]
BLAST of CmoCh07G013180.1 vs. TAIR10
Match: AT3G55750.1 (AT3G55750.1 Ribosomal protein L35Ae family protein)

HSP 1 Score: 200.3 bits (508), Expect = 1.0e-51
Identity = 93/111 (83.78%), Postives = 103/111 (92.79%), Query Frame = 1 

Query: 73  VKGSKGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKAK 132
           +KG +GERVRLYVRGTVLGYKRSKSNQYP TSL+QIEGVNT+EEV WY GKRLAYIYKAK
Sbjct: 1   MKGRQGERVRLYVRGTVLGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGKRLAYIYKAK 60

Query: 133 VKQNGTHYRCIWGKVSRAHGNSGIVRAKFKSNLPPKSMGDKVRVFMYPSNI 184
            K+NG+HYRCIWGKV+R HGNSG+VR+KF SNLPPKSMG +VRVFMYPSNI
Sbjct: 61  TKKNGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARVRVFMYPSNI 111

[Close]
BLAST of CmoCh07G013180.1 vs. NCBI nr
Match: gi|659083091|ref|XP_008442180.1| (PREDICTED: 60S ribosomal protein L35a-1-like [Cucumis melo])

HSP 1 Score: 225.3 bits (573), Expect = 8.5e-56
Identity = 107/112 (95.54%), Postives = 111/112 (99.11%), Query Frame = 1 

Query: 72  MVKGSKGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKA 131
           MVKGS+GER+RLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNT+EEVAWYAGKRLAYIYKA
Sbjct: 1   MVKGSQGERIRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTREEVAWYAGKRLAYIYKA 60

Query: 132 KVKQNGTHYRCIWGKVSRAHGNSGIVRAKFKSNLPPKSMGDKVRVFMYPSNI 184
           KVKQNGTHYRCIWGKVSR HGNSGIVRAKFKSNLPPKSMGDK+RVFMYPSNI
Sbjct: 61  KVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMGDKIRVFMYPSNI 112

[Close]
BLAST of CmoCh07G013180.1 vs. NCBI nr
Match: gi|778695048|ref|XP_011653915.1| (PREDICTED: 60S ribosomal protein L35a-1-like [Cucumis sativus])

HSP 1 Score: 223.4 bits (568), Expect = 3.2e-55
Identity = 106/112 (94.64%), Postives = 110/112 (98.21%), Query Frame = 1 

Query: 72  MVKGSKGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKA 131
           MVKG +GER+RLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNT+EEVAWYAGKRLAYIYKA
Sbjct: 1   MVKGRQGERIRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTREEVAWYAGKRLAYIYKA 60

Query: 132 KVKQNGTHYRCIWGKVSRAHGNSGIVRAKFKSNLPPKSMGDKVRVFMYPSNI 184
           KVKQNGTHYRCIWGKVSR HGNSGIVRAKFKSNLPPKSMGDK+RVFMYPSNI
Sbjct: 61  KVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMGDKIRVFMYPSNI 112

[Close]
BLAST of CmoCh07G013180.1 vs. NCBI nr
Match: gi|728828408|gb|KHG07851.1| (60S ribosomal L35a-1 -like protein [Gossypium arboreum])

HSP 1 Score: 216.5 bits (550), Expect = 4.0e-53
Identity = 101/112 (90.18%), Postives = 109/112 (97.32%), Query Frame = 1 

Query: 72  MVKGSKGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKA 131
           MVKG +GERVRLYVRGT+LGYKRSKSNQYP TSLIQIEGVNTKEEVAWYAGKR+AYIYKA
Sbjct: 51  MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEEVAWYAGKRMAYIYKA 110

Query: 132 KVKQNGTHYRCIWGKVSRAHGNSGIVRAKFKSNLPPKSMGDKVRVFMYPSNI 184
           KVK+NG+HYRCIWGKV+R HGNSG+VRAKFKSNLPPKSMGD+VRVFMYPSNI
Sbjct: 111 KVKKNGSHYRCIWGKVTRPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 162

[Close]
BLAST of CmoCh07G013180.1 vs. NCBI nr
Match: gi|823243288|ref|XP_012454296.1| (PREDICTED: 60S ribosomal protein L35a-1 [Gossypium raimondii])

HSP 1 Score: 216.5 bits (550), Expect = 4.0e-53
Identity = 101/112 (90.18%), Postives = 109/112 (97.32%), Query Frame = 1 

Query: 72  MVKGSKGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKA 131
           MVKG +GERVRLYVRGT+LGYKRSKSNQYP TSLIQIEGVNTKEEVAWYAGKR+AYIYKA
Sbjct: 1   MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLIQIEGVNTKEEVAWYAGKRMAYIYKA 60

Query: 132 KVKQNGTHYRCIWGKVSRAHGNSGIVRAKFKSNLPPKSMGDKVRVFMYPSNI 184
           KVK+NG+HYRCIWGKV+R HGNSG+VRAKFKSNLPPKSMGD+VRVFMYPSNI
Sbjct: 61  KVKKNGSHYRCIWGKVTRPHGNSGVVRAKFKSNLPPKSMGDRVRVFMYPSNI 112

[Close]
BLAST of CmoCh07G013180.1 vs. NCBI nr
Match: gi|502112306|ref|XP_004494288.1| (PREDICTED: 60S ribosomal protein L35a-1-like [Cicer arietinum])

HSP 1 Score: 215.3 bits (547), Expect = 8.8e-53
Identity = 102/112 (91.07%), Postives = 108/112 (96.43%), Query Frame = 1 

Query: 72  MVKGSKGERVRLYVRGTVLGYKRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKA 131
           MVKG +GERVRLYVRGTVLGYKRSKSNQYP TSL+QIEGVNTKEEVAWYAGKRLAYIYKA
Sbjct: 1   MVKGRQGERVRLYVRGTVLGYKRSKSNQYPNTSLVQIEGVNTKEEVAWYAGKRLAYIYKA 60

Query: 132 KVKQNGTHYRCIWGKVSRAHGNSGIVRAKFKSNLPPKSMGDKVRVFMYPSNI 184
           KVK+NGTHYRC+WGKV+R HGNSGIVRAKFKSNLPPKSMG +VRVFMYPSNI
Sbjct: 61  KVKKNGTHYRCLWGKVTRPHGNSGIVRAKFKSNLPPKSMGARVRVFMYPSNI 112

The following BLAST results are available for this feature:
BLAST of CmoCh07G013180.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
R35A3_ARATH1.3e-5183.9360S ribosomal protein L35a-3 OS=Arabidopsis thaliana GN=RPL35AC PE=3 SV=1[more]
R35A1_ARATH1.3e-5183.0460S ribosomal protein L35a-1 OS=Arabidopsis thaliana GN=RPL35AA PE=3 SV=1[more]
R35A2_ARATH1.4e-5084.6860S ribosomal protein L35a-2 OS=Arabidopsis thaliana GN=RPL35AB PE=3 SV=1[more]
R35A4_ARATH1.8e-5083.7860S ribosomal protein L35a-4 OS=Arabidopsis thaliana GN=RPL35AD PE=3 SV=2[more]
RL33B_YEAST1.3e-2755.2460S ribosomal protein L33-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S2... [more]
BLAST of CmoCh07G013180.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0D2VTL7_GOSRA2.8e-5390.18Uncharacterized protein OS=Gossypium raimondii GN=B456_011G278900 PE=4 SV=1[more]
A0A0B0N9V3_GOSAR2.8e-5390.1860S ribosomal L35a-1-like protein OS=Gossypium arboreum GN=F383_12852 PE=4 SV=1[more]
I3NML8_HEVBR2.8e-5390.1860S ribosomal protein L35aA OS=Hevea brasiliensis GN=RPL35aA PE=2 SV=1[more]
A0A061ESF1_THECC6.1e-5390.18Ribosomal protein L35Ae family protein isoform 1 OS=Theobroma cacao GN=TCM_02178... [more]
S8D037_9LAMI8.0e-5386.96Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_02083 PE=4 SV=1[more]
BLAST of CmoCh07G013180.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G07070.17.2e-5383.04 Ribosomal protein L35Ae family protein[more]
AT1G74270.17.2e-5383.93 Ribosomal protein L35Ae family protein[more]
AT1G41880.17.9e-5284.68 Ribosomal protein L35Ae family protein[more]
AT3G55750.11.0e-5183.78 Ribosomal protein L35Ae family protein[more]
BLAST of CmoCh07G013180.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659083091|ref|XP_008442180.1|8.5e-5695.54PREDICTED: 60S ribosomal protein L35a-1-like [Cucumis melo][more]
gi|778695048|ref|XP_011653915.1|3.2e-5594.64PREDICTED: 60S ribosomal protein L35a-1-like [Cucumis sativus][more]
gi|728828408|gb|KHG07851.1|4.0e-5390.1860S ribosomal L35a-1 -like protein [Gossypium arboreum][more]
gi|823243288|ref|XP_012454296.1|4.0e-5390.18PREDICTED: 60S ribosomal protein L35a-1 [Gossypium raimondii][more]
gi|502112306|ref|XP_004494288.1|8.8e-5391.07PREDICTED: 60S ribosomal protein L35a-1-like [Cicer arietinum][more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR001780Ribosomal_L35A
IPR009000Transl_B-barrel_sf
IPR018266Ribosomal_L35Ae_CS
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
biological_process GO:0042254 ribosome biogenesis
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmoCh07G013180CmoCh07G013180gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmoCh07G013180.1CmoCh07G013180.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh07G013180.1.exon.1CmoCh07G013180.1.exon.1exon
CmoCh07G013180.1.exon.2CmoCh07G013180.1.exon.2exon
CmoCh07G013180.1.exon.3CmoCh07G013180.1.exon.3exon
CmoCh07G013180.1.exon.4CmoCh07G013180.1.exon.4exon
CmoCh07G013180.1.exon.5CmoCh07G013180.1.exon.5exon
CmoCh07G013180.1.exon.6CmoCh07G013180.1.exon.6exon
CmoCh07G013180.1.exon.7CmoCh07G013180.1.exon.7exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh07G013180.1.CDS.1CmoCh07G013180.1.CDS.1CDS
CmoCh07G013180.1.CDS.2CmoCh07G013180.1.CDS.2CDS
CmoCh07G013180.1.CDS.3CmoCh07G013180.1.CDS.3CDS
CmoCh07G013180.1.CDS.4CmoCh07G013180.1.CDS.4CDS
CmoCh07G013180.1.CDS.5CmoCh07G013180.1.CDS.5CDS
CmoCh07G013180.1.CDS.6CmoCh07G013180.1.CDS.6CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh07G013180.1.three_prime_UTR.1CmoCh07G013180.1.three_prime_UTR.1three_prime_UTR
CmoCh07G013180.1.three_prime_UTR.2CmoCh07G013180.1.three_prime_UTR.2three_prime_UTR


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001780Ribosomal protein L35APRODOMPD012670coord: 85..176
score: 3.0
IPR001780Ribosomal protein L35APANTHERPTHR1090260S RIBOSOMAL PROTEIN L35Acoord: 67..183
score: 4.0
IPR001780Ribosomal protein L35APFAMPF01247Ribosomal_L35Aecoord: 83..177
score: 1.8
IPR009000Translation protein, beta-barrel domainunknownSSF50447Translation proteinscoord: 83..177
score: 2.83
IPR018266Ribosomal protein L35Ae, conserved sitePROSITEPS01105RIBOSOMAL_L35AEcoord: 145..166
scor