Cp4.1LG10g12120 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG10g12120
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	60S ribosomal protein L35a
Location	Cp4.1LG10 : 8008915 .. 8011289 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAAACCCTAGAAATTTCTTCAATCATTTTGACCCTCAAATCCCCATTATAAAAGTTCCTCTCTTCTATAAGTGGTCATCTTCTTCTCTGAACCGCAGCTCCATCTTCCTCTCTTCAACCTGCAAATCCAAGGTGATTATTCCTCAAAGATTTCCATTTTTTTTCTTACCAATGGCATTTACATTTGGTTACCGATCTTAGTTCTTAGTATCTTGGCTTGAAGACGTCATTTTACAGAATCCTAGACTGCGGCAGCAATGGTGAAGGGAAGTCAGGGAGAAAGAATCAGGTCTCTCTCCAAACCCTAGATCAAGCCGATTTGATTGCTTTATTTTCTATGTTTTTTACCGATTTGCTAATGTATTGTGTTTGTTTCAGACTCTACGTCAGAGGAACGGTCCTTGGGTACAAAAGGTAATTGGTTTCGCTTCGATTATCGAATGTTGGACTGGTTTTTTCTTAGTGATGAGTACTTTTTTAAGTGTAGTTTGATGCCAGAGAATTGATGAAACTGGATTTGAAATATGCGTTAGGTTTAGTGATTAGTTAGTGAGGGATGCTATTGTTTGTGTGGGAGCTAAGAATTTGGAATTGGTATTTAGGTCCAAGTCAAACCAGTATCCAAGAACATCACTGATTCAGATTGAAGGTGTGAATACCAAGGAAGAGGTTGCATGGTATGCTGGAAAACGGTTGGCATATATTTACAAGGCCAAAGTGAAGCAAAATGGAACTCACTATCGGTGCATTTGGGGCAAGGTATCCAGACCTCATGGTAACAGTGGCATTGTTCGAGCTAAGTTTAAGTCAAACTTGCCCCCAAAATCCATGGTAATGTGGAATGAGTAGCTGTTTCTTCATATTTGTTCAATGATGGTATATTGGGATAGGTTTTGTGATTGAATTTCTGGACAATTTTGCAGGGTGATAAAATTAGGGTATTTATGTACCCCAGCAACATATGAGGTACACTCCCCTCCACCACTCTTTTTGATGTAGAAAGGGAAAAACCATCCATGCTGTTCATCTTAATGTGATAAAAACACAGTATGCTTGATATTGCATTCCAATATTCAATTTTTGTTTGCTTTACTTAATGGGATTTGTGATGGTAGTCCTGTGATCATTGTATCATTTGTAATATGTTTTTCTCGATCTTTGTTTTTGTTTTTCTGATCTTGGGTGTTGTTATCTATCTTATGTGTGCTTATTTCAGAATGATTATTCATGGATTCTTGTCTTTTCAATCTCTAATTTGGAGCTTGATGGCAATCAGATGTTCTTGAGATGTCTTTATGTATTCTTCCAATAGTGCAGTGCGTTTTATAGGGCTGCAATACTGTGCTGTTTCGTGTTCCGAAGATTCGATTTATATTTTCCAAAATTCTAATCTGTTACACAGATTTTTTATTTTACCTTAATGTCTTTGGCTCTAGCATTATGTCTTGTCCTCACGATGGAATTTTTAGTTTTACTTTTGGACCAATTTCATATAATTCTTTTTTCTAAGTTCATTTCTTGACAATTCACATAATCCAGTCCATGCCTGTTATAGATCGGATATCTTTCTCTTGTCTGGTTATACTTTTCGTCTGGTTATACTTTTCTAGCCCTGGTTCTAGCAACCTCTGCGTCCTGTAGTACTCCGTTGTATTTCATATGAACTGATGGAAGCCAGATTGGATTCTTAGTTGACTTGGATCTATCTATATTTTCCTTTTATTGTTTTGTTTTTACAACACAGTTCATGTTTAGTTGATAAGTTCAGGGTAAACTTCATTTCTCGGTTATCGACAAACGTAAATCGTTCTGCCATGTCGTTTTCTTAAAATGGATTTTTCAACGTCGTGAATCAAGACACCACAAATTGTTATTATTTGACCAGTGTTCATCCATGAATGGGGTTTCATTTCCTATACTGATTCTGTTGTAGAACCTTCGTGTGTCGTGATCGTGAATCTAATTAATATCCGAATCTGTAGGAGTGTTTGTCTAAACTTATAAAACCAGACACCTTCACTTCTAAATGTTTTACTGCTTAGTTCATGTAGCGTTGTTTCTGATCTCTTTTTTATTTTTTTGCAGTTCCTCAAATCAGCTAGCTAGAGGGGTAAGGTTTCGTTTCTTTCTCGACTTGATGGATCATCGATAGTTTTCTTTTACTTTACTGGACCCAATGTTTAGATGATGATATTTTGATGTGAAACATGACTAAATTTGGAAGGATCATTATGGAATCATACTTTCAATTTTGACCTAGATTAATTTAATGTCAAGGCATCTCTGCAAGACTTCACTTGCATTTAGATATCTGTTCTTGATACTATTGTGAGTTTAAGAAACTTGATGGCAATAGCATGGCTTCACATTAAATC

mRNA sequence

GGAAACCCTAGAAATTTCTTCAATCATTTTGACCCTCAAATCCCCATTATAAAAGTTCCTCTCTTCTATAAGTGGTCATCTTCTTCTCTGAACCGCAGCTCCATCTTCCTCTCTTCAACCTGCAAATCCAAGACGTCATTTTACAGAATCCTAGACTGCGGCAGCAATGGTGAAGGGAAGTCAGGGAGAAAGAATCAGACTCTACGTCAGAGGAACGGTCCTTGGGTACAAAAGAGAATTGATGAAACTGGATTTGAAATATGCGTTAGGTCCAAGTCAAACCAGTATCCAAGAACATCACTGATTCAGATTGAAGGTGTGAATACCAAGGAAGAGGTTGCATGGTATGCTGGAAAACGGTTGGCATATATTTACAAGGCCAAAGTGAAGCAAAATGGAACTCACTATCGGTGCATTTGGGGCAAGGTATCCAGACCTCATGGTAACAGTGGCATTGTTCGAGCTAAGTTTAAGTCAAACTTGCCCCCAAAATCCATGGTAATGTGGAATGAGGTGATAAAATTAGGGTATTTATGTACCCCAGCAACATATGAGTCCATGCCTGTTATAGATCGGATATCTTTCTCTTGTCTGGTTATACTTTTCGTCTGGTTATACTTTTCTAGCCCTGGTTCTAGCAACCTCTGCGTCCTGTATTCCTCAAATCAGCTAGCTAGAGGGGTAAGGTTTCGTTTCTTTCTCGACTTGATGGATCATCGATAGTTTTCTTTTACTTTACTGGACCCAATGTTTAGATGATGATATTTTGATGTGAAACATGACTAAATTTGGAAGGATCATTATGGAATCATACTTTCAATTTTGACCTAGATTAATTTAATGTCAAGGCATCTCTGCAAGACTTCACTTGCATTTAGATATCTGTTCTTGATACTATTGTGAGTTTAAGAAACTTGATGGCAATAGCATGGCTTCACATTAAATC

Coding sequence (CDS)

GGAAACCCTAGAAATTTCTTCAATCATTTTGACCCTCAAATCCCCATTATAAAAGTTCCTCTCTTCTATAAGTGGTCATCTTCTTCTCTGAACCGCAGCTCCATCTTCCTCTCTTCAACCTGCAAATCCAAGACGTCATTTTACAGAATCCTAGACTGCGGCAGCAATGGTGAAGGGAAGTCAGGGAGAAAGAATCAGACTCTACGTCAGAGGAACGGTCCTTGGGTACAAAAGAGAATTGATGAAACTGGATTTGAAATATGCGTTAGGTCCAAGTCAAACCAGTATCCAAGAACATCACTGATTCAGATTGAAGGTGTGAATACCAAGGAAGAGGTTGCATGGTATGCTGGAAAACGGTTGGCATATATTTACAAGGCCAAAGTGAAGCAAAATGGAACTCACTATCGGTGCATTTGGGGCAAGGTATCCAGACCTCATGGTAACAGTGGCATTGTTCGAGCTAAGTTTAAGTCAAACTTGCCCCCAAAATCCATGGTAATGTGGAATGAGGTGATAAAATTAGGGTATTTATGTACCCCAGCAACATATGAGTCCATGCCTGTTATAGATCGGATATCTTTCTCTTGTCTGGTTATACTTTTCGTCTGGTTATACTTTTCTAGCCCTGGTTCTAGCAACCTCTGCGTCCTGTATTCCTCAAATCAGCTAGCTAGAGGGGTAAGGTTTCGTTTCTTTCTCGACTTGATGGATCATCGATAG

Protein sequence

GNPRNFFNHFDPQIPIIKVPLFYKWSSSSLNRSSIFLSSTCKSKTSFYRILDCGSNGEGKSGRKNQTLRQRNGPWVQKRIDETGFEICVRSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGNSGIVRAKFKSNLPPKSMVMWNEVIKLGYLCTPATYESMPVIDRISFSCLVILFVWLYFSSPGSSNLCVLYSSNQLARGVRFRFFLDLMDHR

Homology

[Close]

BLAST of Cp4.1LG10g12120 vs. Swiss-Prot
Match: R35A3_ARATH (60S ribosomal protein L35a-3 OS=Arabidopsis thaliana GN=RPL35AC PE=3 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 3.2e-34
Identity = 65/77 (84.42%), Postives = 72/77 (93.51%), Query Frame = 1


Query: 90  RSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGN 149
           RSKSNQYP TSL+QIEGVNT+EEV WY GKR+AYIYKAK K+NG+HYRCIWGKV+RPHGN
Sbjct: 23  RSKSNQYPNTSLVQIEGVNTQEEVNWYKGKRMAYIYKAKTKKNGSHYRCIWGKVTRPHGN 82

Query: 150 SGIVRAKFKSNLPPKSM 167
           SG+VRAKF SNLPPKSM
Sbjct: 83  SGVVRAKFTSNLPPKSM 99

[Close]

BLAST of Cp4.1LG10g12120 vs. Swiss-Prot
Match: R35A1_ARATH (60S ribosomal protein L35a-1 OS=Arabidopsis thaliana GN=RPL35AA PE=3 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 3.2e-34
Identity = 64/77 (83.12%), Postives = 72/77 (93.51%), Query Frame = 1


Query: 90  RSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGN 149
           RSKSNQYP TSL+Q+EGVNT EEV+WY GKR+AYIYKAK K+NG+HYRCIWGKV+RPHGN
Sbjct: 23  RSKSNQYPNTSLVQVEGVNTTEEVSWYKGKRMAYIYKAKTKKNGSHYRCIWGKVTRPHGN 82

Query: 150 SGIVRAKFKSNLPPKSM 167
           SG+VRAKF SNLPPKSM
Sbjct: 83  SGVVRAKFTSNLPPKSM 99

[Close]

BLAST of Cp4.1LG10g12120 vs. Swiss-Prot
Match: R35A2_ARATH (60S ribosomal protein L35a-2 OS=Arabidopsis thaliana GN=RPL35AB PE=3 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 3.2e-34
Identity = 66/77 (85.71%), Postives = 72/77 (93.51%), Query Frame = 1


Query: 90  RSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGN 149
           RSKSNQYP TSLIQIEGVNT+EEV WY GKRLAYIYKAK K+NG+HYRCIWGKV+RPHGN
Sbjct: 22  RSKSNQYPNTSLIQIEGVNTQEEVNWYKGKRLAYIYKAKTKKNGSHYRCIWGKVTRPHGN 81

Query: 150 SGIVRAKFKSNLPPKSM 167
           SG+VR+KF SNLPPKSM
Sbjct: 82  SGVVRSKFTSNLPPKSM 98

[Close]

BLAST of Cp4.1LG10g12120 vs. Swiss-Prot
Match: R35A4_ARATH (60S ribosomal protein L35a-4 OS=Arabidopsis thaliana GN=RPL35AD PE=3 SV=2)

HSP 1 Score: 146.4 bits (368), Expect = 4.1e-34
Identity = 65/77 (84.42%), Postives = 72/77 (93.51%), Query Frame = 1


Query: 90  RSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGN 149
           RSKSNQYP TSL+QIEGVNT+EEV WY GKRLAYIYKAK K+NG+HYRCIWGKV+RPHGN
Sbjct: 22  RSKSNQYPNTSLVQIEGVNTQEEVNWYKGKRLAYIYKAKTKKNGSHYRCIWGKVTRPHGN 81

Query: 150 SGIVRAKFKSNLPPKSM 167
           SG+VR+KF SNLPPKSM
Sbjct: 82  SGVVRSKFTSNLPPKSM 98

[Close]

BLAST of Cp4.1LG10g12120 vs. Swiss-Prot
Match: RL33A_SCHPO (60S ribosomal protein L33-A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl35b PE=3 SV=2)

HSP 1 Score: 94.4 bits (233), Expect = 1.9e-18
Identity = 42/76 (55.26%), Postives = 56/76 (73.68%), Query Frame = 1


Query: 90  RSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGN 149
           RSK   +P TSL++IEG ++KEE  +Y GKR+ ++YK+     G+  R IWG VSRPHGN
Sbjct: 19  RSKHVIHPGTSLVKIEGCDSKEEAQFYLGKRICFVYKSNKPVRGSKIRVIWGTVSRPHGN 78

Query: 150 SGIVRAKFKSNLPPKS 166
           SG+VRA+F  NLPPK+
Sbjct: 79  SGVVRARFTHNLPPKT 94

[Close]

BLAST of Cp4.1LG10g12120 vs. TrEMBL
Match: A0A0B0PWN4_GOSAR (60S ribosomal L35a-3-like protein OS=Gossypium arboreum GN=F383_10337 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 5.6e-38
Identity = 79/96 (82.29%), Postives = 87/96 (90.62%), Query Frame = 1


Query: 90  RSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGN 149
           RSKSNQYP TSLIQIEGVNTKEEVAWYAGKR+AYIYKAKVK+NG+HYRCIWGKV+RPHGN
Sbjct: 23  RSKSNQYPNTSLIQIEGVNTKEEVAWYAGKRMAYIYKAKVKKNGSHYRCIWGKVTRPHGN 82

Query: 150 SGIVRAKFKSNLPPKSMVMWNEVIKLGYLCTPATYE 186
           SG+VRAKFKSNLPPKSMV  +  I+    CTPAT+E
Sbjct: 83  SGVVRAKFKSNLPPKSMV--SVEIESESSCTPATFE 116

[Close]

BLAST of Cp4.1LG10g12120 vs. TrEMBL
Match: A0A0B0PL31_GOSAR (60S ribosomal protein L35a-3 OS=Gossypium arboreum GN=F383_03046 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 7.3e-38
Identity = 79/96 (82.29%), Postives = 85/96 (88.54%), Query Frame = 1


Query: 90  RSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGN 149
           RSKSNQYP TSLIQIEGVNTKEEVAWYAGKR+AYIYKAKVK+NG+HYRCIWGKV+RPHGN
Sbjct: 23  RSKSNQYPNTSLIQIEGVNTKEEVAWYAGKRMAYIYKAKVKKNGSHYRCIWGKVTRPHGN 82

Query: 150 SGIVRAKFKSNLPPKSMVMWNEVIKLGYLCTPATYE 186
           SG+VRAKFKSNLPPKSMV     I+    CTPA YE
Sbjct: 83  SGVVRAKFKSNLPPKSMVRME--IESESSCTPAIYE 116

[Close]

BLAST of Cp4.1LG10g12120 vs. TrEMBL
Match: A0A0B0PRV1_GOSAR (60S ribosomal protein L35a-1 OS=Gossypium arboreum GN=F383_03046 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 5.2e-36
Identity = 76/96 (79.17%), Postives = 82/96 (85.42%), Query Frame = 1


Query: 90  RSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGN 149
           RSKSNQYP TSLIQIEGVNTKEEVAWYAGKR+AYIYKAKVK+NG+HYRCIWGKV+RPHGN
Sbjct: 23  RSKSNQYPNTSLIQIEGVNTKEEVAWYAGKRMAYIYKAKVKKNGSHYRCIWGKVTRPHGN 82

Query: 150 SGIVRAKFKSNLPPKSMVMWNEVIKLGYLCTPATYE 186
           SG+VRAKFKSNLPPK        I+    CTPA YE
Sbjct: 83  SGVVRAKFKSNLPPKE-------IESESSCTPAIYE 111

[Close]

BLAST of Cp4.1LG10g12120 vs. TrEMBL
Match: F6HNM2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0019g03260 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 6.8e-36
Identity = 74/101 (73.27%), Postives = 86/101 (85.15%), Query Frame = 1


Query: 90  RSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGN 149
           RSKSNQYP TSLIQIEGVNTKEEVAWY GKR+AYIYKAKVK++G+H+RCIWGKV+RPHGN
Sbjct: 23  RSKSNQYPNTSLIQIEGVNTKEEVAWYCGKRMAYIYKAKVKKDGSHFRCIWGKVTRPHGN 82

Query: 150 SGIVRAKFKSNLPPKSMVMWNEVIKLGYLCTPATYESMPVI 191
           SG+VRAKFKSNLPPKSM      +  G+ CT ATY+   ++
Sbjct: 83  SGVVRAKFKSNLPPKSM------LGSGFSCTQATYKLFEIM 117

[Close]

BLAST of Cp4.1LG10g12120 vs. TrEMBL
Match: A0A0D2UZL7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G074800 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 8.9e-36
Identity = 71/79 (89.87%), Postives = 78/79 (98.73%), Query Frame = 1


Query: 90  RSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGN 149
           RSKSNQYP TSLIQIEGVNTKEEVAWYAGKR+AYIYKAKVK+NG+HYRCIWGKV+RPHGN
Sbjct: 23  RSKSNQYPNTSLIQIEGVNTKEEVAWYAGKRMAYIYKAKVKKNGSHYRCIWGKVTRPHGN 82

Query: 150 SGIVRAKFKSNLPPKSMVM 169
           SG+VRAKFKSNLPPKSM++
Sbjct: 83  SGVVRAKFKSNLPPKSMIL 101

[Close]

BLAST of Cp4.1LG10g12120 vs. TAIR10
Match: AT1G41880.1 (AT1G41880.1 Ribosomal protein L35Ae family protein)

HSP 1 Score: 146.7 bits (369), Expect = 1.8e-35
Identity = 66/77 (85.71%), Postives = 72/77 (93.51%), Query Frame = 1


Query: 90  RSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGN 149
           RSKSNQYP TSLIQIEGVNT+EEV WY GKRLAYIYKAK K+NG+HYRCIWGKV+RPHGN
Sbjct: 22  RSKSNQYPNTSLIQIEGVNTQEEVNWYKGKRLAYIYKAKTKKNGSHYRCIWGKVTRPHGN 81

Query: 150 SGIVRAKFKSNLPPKSM 167
           SG+VR+KF SNLPPKSM
Sbjct: 82  SGVVRSKFTSNLPPKSM 98

[Close]

BLAST of Cp4.1LG10g12120 vs. TAIR10
Match: AT1G07070.1 (AT1G07070.1 Ribosomal protein L35Ae family protein)

HSP 1 Score: 146.7 bits (369), Expect = 1.8e-35
Identity = 64/77 (83.12%), Postives = 72/77 (93.51%), Query Frame = 1


Query: 90  RSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGN 149
           RSKSNQYP TSL+Q+EGVNT EEV+WY GKR+AYIYKAK K+NG+HYRCIWGKV+RPHGN
Sbjct: 23  RSKSNQYPNTSLVQVEGVNTTEEVSWYKGKRMAYIYKAKTKKNGSHYRCIWGKVTRPHGN 82

Query: 150 SGIVRAKFKSNLPPKSM 167
           SG+VRAKF SNLPPKSM
Sbjct: 83  SGVVRAKFTSNLPPKSM 99

[Close]

BLAST of Cp4.1LG10g12120 vs. TAIR10
Match: AT1G74270.1 (AT1G74270.1 Ribosomal protein L35Ae family protein)

HSP 1 Score: 146.7 bits (369), Expect = 1.8e-35
Identity = 65/77 (84.42%), Postives = 72/77 (93.51%), Query Frame = 1


Query: 90  RSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGN 149
           RSKSNQYP TSL+QIEGVNT+EEV WY GKR+AYIYKAK K+NG+HYRCIWGKV+RPHGN
Sbjct: 23  RSKSNQYPNTSLVQIEGVNTQEEVNWYKGKRMAYIYKAKTKKNGSHYRCIWGKVTRPHGN 82

Query: 150 SGIVRAKFKSNLPPKSM 167
           SG+VRAKF SNLPPKSM
Sbjct: 83  SGVVRAKFTSNLPPKSM 99

[Close]

BLAST of Cp4.1LG10g12120 vs. TAIR10
Match: AT3G55750.1 (AT3G55750.1 Ribosomal protein L35Ae family protein)

HSP 1 Score: 146.4 bits (368), Expect = 2.3e-35
Identity = 65/77 (84.42%), Postives = 72/77 (93.51%), Query Frame = 1


Query: 90  RSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGN 149
           RSKSNQYP TSL+QIEGVNT+EEV WY GKRLAYIYKAK K+NG+HYRCIWGKV+RPHGN
Sbjct: 22  RSKSNQYPNTSLVQIEGVNTQEEVNWYKGKRLAYIYKAKTKKNGSHYRCIWGKVTRPHGN 81

Query: 150 SGIVRAKFKSNLPPKSM 167
           SG+VR+KF SNLPPKSM
Sbjct: 82  SGVVRSKFTSNLPPKSM 98

[Close]

BLAST of Cp4.1LG10g12120 vs. NCBI nr
Match: gi|728849396|gb|KHG28839.1| (60S ribosomal L35a-3 -like protein [Gossypium arboreum])

HSP 1 Score: 166.0 bits (419), Expect = 8.0e-38
Identity = 79/96 (82.29%), Postives = 87/96 (90.62%), Query Frame = 1


Query: 90  RSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGN 149
           RSKSNQYP TSLIQIEGVNTKEEVAWYAGKR+AYIYKAKVK+NG+HYRCIWGKV+RPHGN
Sbjct: 23  RSKSNQYPNTSLIQIEGVNTKEEVAWYAGKRMAYIYKAKVKKNGSHYRCIWGKVTRPHGN 82

Query: 150 SGIVRAKFKSNLPPKSMVMWNEVIKLGYLCTPATYE 186
           SG+VRAKFKSNLPPKSMV  +  I+    CTPAT+E
Sbjct: 83  SGVVRAKFKSNLPPKSMV--SVEIESESSCTPATFE 116

[Close]

BLAST of Cp4.1LG10g12120 vs. NCBI nr
Match: gi|728847715|gb|KHG27158.1| (60S ribosomal protein L35a-3 [Gossypium arboreum])

HSP 1 Score: 165.6 bits (418), Expect = 1.1e-37
Identity = 79/96 (82.29%), Postives = 85/96 (88.54%), Query Frame = 1


Query: 90  RSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGN 149
           RSKSNQYP TSLIQIEGVNTKEEVAWYAGKR+AYIYKAKVK+NG+HYRCIWGKV+RPHGN
Sbjct: 23  RSKSNQYPNTSLIQIEGVNTKEEVAWYAGKRMAYIYKAKVKKNGSHYRCIWGKVTRPHGN 82

Query: 150 SGIVRAKFKSNLPPKSMVMWNEVIKLGYLCTPATYE 186
           SG+VRAKFKSNLPPKSMV     I+    CTPA YE
Sbjct: 83  SGVVRAKFKSNLPPKSMVRME--IESESSCTPAIYE 116

[Close]

BLAST of Cp4.1LG10g12120 vs. NCBI nr
Match: gi|778695048|ref|XP_011653915.1| (PREDICTED: 60S ribosomal protein L35a-1-like [Cucumis sativus])

HSP 1 Score: 162.9 bits (411), Expect = 6.8e-37
Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = 1


Query: 90  RSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGN 149
           RSKSNQYPRTSLIQIEGVNT+EEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGN
Sbjct: 23  RSKSNQYPRTSLIQIEGVNTREEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGN 82

Query: 150 SGIVRAKFKSNLPPKSM 167
           SGIVRAKFKSNLPPKSM
Sbjct: 83  SGIVRAKFKSNLPPKSM 99

[Close]

BLAST of Cp4.1LG10g12120 vs. NCBI nr
Match: gi|659083091|ref|XP_008442180.1| (PREDICTED: 60S ribosomal protein L35a-1-like [Cucumis melo])

HSP 1 Score: 162.9 bits (411), Expect = 6.8e-37
Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = 1


Query: 90  RSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGN 149
           RSKSNQYPRTSLIQIEGVNT+EEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGN
Sbjct: 23  RSKSNQYPRTSLIQIEGVNTREEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGN 82

Query: 150 SGIVRAKFKSNLPPKSM 167
           SGIVRAKFKSNLPPKSM
Sbjct: 83  SGIVRAKFKSNLPPKSM 99

[Close]

BLAST of Cp4.1LG10g12120 vs. NCBI nr
Match: gi|728847716|gb|KHG27159.1| (60S ribosomal protein L35a-1 [Gossypium arboreum])

HSP 1 Score: 159.5 bits (402), Expect = 7.5e-36
Identity = 76/96 (79.17%), Postives = 82/96 (85.42%), Query Frame = 1


Query: 90  RSKSNQYPRTSLIQIEGVNTKEEVAWYAGKRLAYIYKAKVKQNGTHYRCIWGKVSRPHGN 149
           RSKSNQYP TSLIQIEGVNTKEEVAWYAGKR+AYIYKAKVK+NG+HYRCIWGKV+RPHGN
Sbjct: 23  RSKSNQYPNTSLIQIEGVNTKEEVAWYAGKRMAYIYKAKVKKNGSHYRCIWGKVTRPHGN 82

Query: 150 SGIVRAKFKSNLPPKSMVMWNEVIKLGYLCTPATYE 186
           SG+VRAKFKSNLPPK        I+    CTPA YE
Sbjct: 83  SGVVRAKFKSNLPPKE-------IESESSCTPAIYE 111

The following BLAST results are available for this feature:

BLAST of Cp4.1LG10g12120 vs. Swiss-Prot


Match Name	E-value	Identity	Description
R35A3_ARATH	3.2e-34	84.42	60S ribosomal protein L35a-3 OS=Arabidopsis thaliana GN=RPL35AC PE=3 SV=1	[more]
R35A1_ARATH	3.2e-34	83.12	60S ribosomal protein L35a-1 OS=Arabidopsis thaliana GN=RPL35AA PE=3 SV=1	[more]
R35A2_ARATH	3.2e-34	85.71	60S ribosomal protein L35a-2 OS=Arabidopsis thaliana GN=RPL35AB PE=3 SV=1	[more]
R35A4_ARATH	4.1e-34	84.42	60S ribosomal protein L35a-4 OS=Arabidopsis thaliana GN=RPL35AD PE=3 SV=2	[more]
RL33A_SCHPO	1.9e-18	55.26	60S ribosomal protein L33-A OS=Schizosaccharomyces pombe (strain 972 / ATCC 2484...	[more]

BLAST of Cp4.1LG10g12120 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0B0PWN4_GOSAR	5.6e-38	82.29	60S ribosomal L35a-3-like protein OS=Gossypium arboreum GN=F383_10337 PE=4 SV=1	[more]
A0A0B0PL31_GOSAR	7.3e-38	82.29	60S ribosomal protein L35a-3 OS=Gossypium arboreum GN=F383_03046 PE=4 SV=1	[more]
A0A0B0PRV1_GOSAR	5.2e-36	79.17	60S ribosomal protein L35a-1 OS=Gossypium arboreum GN=F383_03046 PE=4 SV=1	[more]
F6HNM2_VITVI	6.8e-36	73.27	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0019g03260 PE=4 SV=...	[more]
A0A0D2UZL7_GOSRA	8.9e-36	89.87	Uncharacterized protein OS=Gossypium raimondii GN=B456_012G074800 PE=4 SV=1	[more]

BLAST of Cp4.1LG10g12120 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G41880.1	1.8e-35	85.71	Ribosomal protein L35Ae family protein	[more]
AT1G07070.1	1.8e-35	83.12	Ribosomal protein L35Ae family protein	[more]
AT1G74270.1	1.8e-35	84.42	Ribosomal protein L35Ae family protein	[more]
AT3G55750.1	2.3e-35	84.42	Ribosomal protein L35Ae family protein	[more]

BLAST of Cp4.1LG10g12120 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|728849396\|gb\|KHG28839.1\|	8.0e-38	82.29	60S ribosomal L35a-3 -like protein [Gossypium arboreum]	[more]
gi\|728847715\|gb\|KHG27158.1\|	1.1e-37	82.29	60S ribosomal protein L35a-3 [Gossypium arboreum]	[more]
gi\|778695048\|ref\|XP_011653915.1\|	6.8e-37	98.70	PREDICTED: 60S ribosomal protein L35a-1-like [Cucumis sativus]	[more]
gi\|659083091\|ref\|XP_008442180.1\|	6.8e-37	98.70	PREDICTED: 60S ribosomal protein L35a-1-like [Cucumis melo]	[more]
gi\|728847716\|gb\|KHG27159.1\|	7.5e-36	79.17	60S ribosomal protein L35a-1 [Gossypium arboreum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR018266	Ribosomal_L35Ae_CS
IPR009000	Transl_B-barrel_sf
IPR001780	Ribosomal_L35A

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG10g12120.1	Cp4.1LG10g12120.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001780	Ribosomal protein L35A	PRODOM	PD012670		coord: 90..166 score: 8.0
IPR001780	Ribosomal protein L35A	PANTHER	PTHR10902	60S RIBOSOMAL PROTEIN L35A	coord: 90..166 score: 2.6
IPR001780	Ribosomal protein L35A	PFAM	PF01247	Ribosomal_L35Ae	coord: 90..167 score: 3.7
IPR009000	Translation protein, beta-barrel domain	unknown	SSF50447	Translation proteins	coord: 90..166 score: 1.98
IPR018266	Ribosomal protein L35Ae, conserved site	PROSITE	PS01105	RIBOSOMAL_L35AE	coord: 141..162 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG10g12120	Cucsa.357640	Cucumber (Gy14) v1	cgycpeB0931
Cp4.1LG10g12120	CmaCh03G001220	Cucurbita maxima (Rimu)	cmacpeB656
Cp4.1LG10g12120	CmoCh07G013180	Cucurbita moschata (Rifu)	cmocpeB803
Cp4.1LG10g12120	CmoCh03G001340	Cucurbita moschata (Rifu)	cmocpeB606
Cp4.1LG10g12120	Cla011616	Watermelon (97103) v1	cpewmB091
Cp4.1LG10g12120	MELO3C008974	Melon (DHL92) v3.5.1	cpemeB072
Cp4.1LG10g12120	ClCG04G001550	Watermelon (Charleston Gray)	cpewcgB079
Cp4.1LG10g12120	CSPI04G20530	Wild cucumber (PI 183967)	cpecpiB066
Cp4.1LG10g12120	Lsi01G019680	Bottle gourd (USVL1VR-Ls)	cpelsiB055
Cp4.1LG10g12120	MELO3C008974.2	Melon (DHL92) v3.6.1	cpemedB095
Cp4.1LG10g12120	CsaV3_4G030970	Cucumber (Chinese Long) v3	cpecucB0076
Cp4.1LG10g12120	Bhi03G002236	Wax gourd	cpewgoB0092
Cp4.1LG10g12120	CsGy4G019340	Cucumber (Gy14) v2	cgybcpeB464
Cp4.1LG10g12120	Carg25741	Silver-seed gourd	carcpeB1196
Cp4.1LG10g12120	Carg12704	Silver-seed gourd	carcpeB0398

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG10g12120	Cp4.1LG19g00920	Cucurbita pepo (Zucchini)	cpecpeB085

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG10g12120	Cucurbita moschata (Rifu)	cmocpeB605
Cp4.1LG10g12120	Cucumber (Gy14) v2	cgybcpeB466
Cp4.1LG10g12120	Cucumber (Chinese Long) v3	cpecucB0078
Cp4.1LG10g12120	Cucurbita pepo (Zucchini)	cpecpeB079