CmoCh07G006790 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh07G006790
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description(Galactoside 2-alpha-L-fucosyltransferase) (2.4.1.-) (2.4.1.69)
LocationCmo_Chr07 : 3062104 .. 3063729 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCGGAGCGTCCATAGTCGACCTGTATCGAGCTGGAAACGGGAAGCGCGAAGAAACTGAGACTCTCGGAAACGGCGTGGAGGATATATCCATTGAAGAACGGTGTTCACTTGCCGCTAATGTACGTGCGTTTCACACGTGTGGTCAAATGCCTTGCCGTGATACTATTGGTTGAGTGCGGTGACGTGTACTGGAAAAACGACAACATGCCCTACGGTTTTGTTTTTCTTAAAAAAAAAAAATTAAAAGAAGAAAGGGTTTGTATTTTGATTAGTTTTTTTGGCCAACAATACACGACACAACTTAATCTTTTTAAAAGTCTCCAATTTTTTCTTTAATAATTTAACATTTTTTAATGAAGTTCTGTCATAATTTCTTTTCCATAACTTTGTTAGATAATTAAATTTATTATTCTAATCTAATTCCGAGATATTAAAAAAACAACTAATTTGAACATAAATTATTACTTCGAGAGTTCATGCTTAAAGTATACAATATCATACTATTGTAAAGGTTCATAATTGTTGGGAGTGACTAATTTAAGTAATGATCATGGGTCCGTGATTTCTAACACTGTTCACTCCCTTTTCGCCATGATTGAAGTCATCCCCTCCATTTTTCGACCGAATCTTTTCGTTAAGATCATTTAGGTTTTTTAGAAGCTTATTTTAAAGCTTCAACTATATACCAATTCAAGTTTTAAATTTATATTAACAAAAATATTCAATGTTTTTTTTTACATTTGAGTTTCAATAAGAAATATTTTCTAATATGGTCATGTCATTTCAAAAGGCTCGAGTATTATTGGTTAATTCACCATACTAGTTCTAAGTAATCCAAAACATTGATTTTATTTTTATTTTTTAAGAAAATATTTCAAAAATAATTTAAAATTATCATAATTTTTTTTTTGAAGTAAATGTAGACTTTTTAAATTTAAACTATAATCTAACTGATTTGGGATTTCAATTGAAAATATCTGATCTAAAATTTAAAAAACTTAATTATATCATATTAAATCTAATTTACTCATACTAAATTTCCAGCAACATCAATTTAATAACATAATGATTATAAAAATAATTTTTCATTCGGGCGTTGCACTTTAAGAATTTAAAGACTTATAAGGGCATAAAAGATATTTATATTTTTAAAATGGGAATTTTTCCAAAGGGAAAACATTTAGAGGGAGAGAGACTAACGACGAAGAACGCGGGAGGGTGACCGAGAGAGAGATCGACGAACGCAGAGTGGAAGGGTAAAGAGATCGAGACTGAAGACGGGCAATTGCAAGCTATGAACCCTAATTTGAGAGTTTGAGTGCGCCGTCGAGGGGGGAGAGCGTGCAAGTCTCTTTGGCTGAGCTGATTAATTGAGTGCCCTAAAACACCAATTCTTATCGTTTTTCCACTTGACGATAATTTCAGGCTCCGGCGAAAGAGAGACGCCGATGGGCTTTATCAGAAGTAGCTTCTCCTTTATAGTGGGAACGGTATTTGGCATTTACGTGGCTCAAAATTACAGTGTTCCCAACATCAGGAAGCTCGCCAATACTGGGATCCTGATGGCCAAACACATCGAAGAGAACTACAGGAAGCCAAAGAAGCGGGAGGACGATGATTGA

mRNA sequence

ATGATCGGAGCGTCCATAGTCGACCTGTATCGAGCTGGAAACGGGAAGCGCGAAGAAACTGAGACTCTCGGAAACGGCGTGGAGGATATATCCATTGAAGAACGGTGTTCACTTGCCGCTAATGTACGCTCCGGCGAAAGAGAGACGCCGATGGGCTTTATCAGAAGTAGCTTCTCCTTTATAGTGGGAACGGTATTTGGCATTTACGTGGCTCAAAATTACAGTGTTCCCAACATCAGGAAGCTCGCCAATACTGGGATCCTGATGGCCAAACACATCGAAGAGAACTACAGGAAGCCAAAGAAGCGGGAGGACGATGATTGA

Coding sequence (CDS)

ATGATCGGAGCGTCCATAGTCGACCTGTATCGAGCTGGAAACGGGAAGCGCGAAGAAACTGAGACTCTCGGAAACGGCGTGGAGGATATATCCATTGAAGAACGGTGTTCACTTGCCGCTAATGTACGCTCCGGCGAAAGAGAGACGCCGATGGGCTTTATCAGAAGTAGCTTCTCCTTTATAGTGGGAACGGTATTTGGCATTTACGTGGCTCAAAATTACAGTGTTCCCAACATCAGGAAGCTCGCCAATACTGGGATCCTGATGGCCAAACACATCGAAGAGAACTACAGGAAGCCAAAGAAGCGGGAGGACGATGATTGA
Homology
[Close]
BLAST of CmoCh07G006790 vs. TrEMBL
Match: F6I385_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0048g00610 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.9e-18
Identity = 45/57 (78.95%), Postives = 52/57 (91.23%), Query Frame = 1 

Query: 51  MGFIRSSFSFIVGTVFGIYVAQNYSVPNIRKLANTGILMAKHIEENYRKPKKREDDD 108
           MG IRSSF F+VGTV G+Y+AQNY+VPN+RKLANTG++MAKHIEENYRKPKK  DDD
Sbjct: 1   MGIIRSSFMFMVGTVCGVYIAQNYNVPNVRKLANTGLVMAKHIEENYRKPKKNRDDD 57

[Close]
BLAST of CmoCh07G006790 vs. TrEMBL
Match: A0A059C1C4_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_E00434 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.4e-17
Identity = 45/69 (65.22%), Postives = 56/69 (81.16%), Query Frame = 1 

Query: 40  ANVRSGERETP-MGFIRSSFSFIVGTVFGIYVAQNYSVPNIRKLANTGILMAKHIEENYR 99
           +  RS  RE   MG IRS FSF+ GT FG+Y+AQNY+VPNI+KL  TG+++AKHIEENYR
Sbjct: 13  SEARSASREKKRMGLIRSCFSFLTGTAFGVYLAQNYNVPNIKKLTETGLVIAKHIEENYR 72

Query: 100 KPKKREDDD 108
           +PKKR+DDD
Sbjct: 73  RPKKRDDDD 81

[Close]
BLAST of CmoCh07G006790 vs. TrEMBL
Match: B9SSH0_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1061850 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.4e-17
Identity = 45/57 (78.95%), Postives = 51/57 (89.47%), Query Frame = 1 

Query: 51  MGFIRSSFSFIVGTVFGIYVAQNYSVPNIRKLANTGILMAKHIEENYRKPKKREDDD 108
           MG  RS FSFIVGTV GIYVAQNY+VPNIRKL NTG+++AKHIEE YRKPKKR++DD
Sbjct: 1   MGIFRSGFSFIVGTVCGIYVAQNYNVPNIRKLTNTGLVIAKHIEETYRKPKKRDEDD 57

[Close]
BLAST of CmoCh07G006790 vs. TrEMBL
Match: B9N3R9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s00500g PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 3.2e-17
Identity = 43/57 (75.44%), Postives = 50/57 (87.72%), Query Frame = 1 

Query: 51  MGFIRSSFSFIVGTVFGIYVAQNYSVPNIRKLANTGILMAKHIEENYRKPKKREDDD 108
           MG IRS FSFI GTVFG+YVAQNY+VPN+RK+ NTG+L+A HIEE YRKPKKR+ DD
Sbjct: 1   MGIIRSGFSFIAGTVFGVYVAQNYNVPNVRKITNTGLLIANHIEETYRKPKKRDGDD 57

[Close]
BLAST of CmoCh07G006790 vs. TrEMBL
Match: A0A067KUH2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03387 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 9.2e-17
Identity = 42/57 (73.68%), Postives = 51/57 (89.47%), Query Frame = 1 

Query: 51  MGFIRSSFSFIVGTVFGIYVAQNYSVPNIRKLANTGILMAKHIEENYRKPKKREDDD 108
           MG IRS FSFI GT+FG+Y+AQNY+VPN++KLA+TG+L AKHIEE YRKPKKR DD+
Sbjct: 1   MGIIRSGFSFITGTMFGVYLAQNYNVPNLKKLADTGLLFAKHIEETYRKPKKRNDDE 57

[Close]
BLAST of CmoCh07G006790 vs. TAIR10
Match: AT2G35736.1 (AT2G35736.1 unknown protein)

HSP 1 Score: 89.4 bits (220), Expect = 1.5e-18
Identity = 39/52 (75.00%), Postives = 47/52 (90.38%), Query Frame = 1 

Query: 51  MGFIRSSFSFIVGTVFGIYVAQNYSVPNIRKLANTGILMAKHIEENYRKPKK 103
           MG  RS FSFI G+VFG+Y+AQNY+VPNIRKL NTG+++AKH+EENYRKPKK
Sbjct: 1   MGIFRSCFSFITGSVFGVYLAQNYNVPNIRKLTNTGLVVAKHVEENYRKPKK 52

[Close]
BLAST of CmoCh07G006790 vs. TAIR10
Match: AT4G25225.1 (AT4G25225.1 unknown protein)

HSP 1 Score: 80.5 bits (197), Expect = 7.0e-16
Identity = 37/55 (67.27%), Postives = 45/55 (81.82%), Query Frame = 1 

Query: 51  MGFIRSSFSFIVGTVFGIYVAQNYSVPNIRKLANTGILMAKHIEENYRKPKKRED 106
           MG IRSSFSFI+GTV GIY+AQ Y+VPNI+KL +  + MAK +EE YRKPK R+D
Sbjct: 1   MGIIRSSFSFIMGTVCGIYIAQTYNVPNIKKLGHCAVSMAKQVEEKYRKPKSRDD 55

[Close]
BLAST of CmoCh07G006790 vs. NCBI nr
Match: gi|659079603|ref|XP_008440344.1| (PREDICTED: uncharacterized protein LOC103484824 [Cucumis melo])

HSP 1 Score: 107.8 bits (268), Expect = 1.2e-20
Identity = 51/57 (89.47%), Postives = 55/57 (96.49%), Query Frame = 1 

Query: 51  MGFIRSSFSFIVGTVFGIYVAQNYSVPNIRKLANTGILMAKHIEENYRKPKKREDDD 108
           MGFIRSSFSFI G+VFGIYVAQNY+VPNIRKLANTG+ MAKHIEENYRKPKKR+DDD
Sbjct: 1   MGFIRSSFSFIAGSVFGIYVAQNYNVPNIRKLANTGLAMAKHIEENYRKPKKRDDDD 57

[Close]
BLAST of CmoCh07G006790 vs. NCBI nr
Match: gi|778718553|ref|XP_011657883.1| (PREDICTED: uncharacterized protein LOC101209935 [Cucumis sativus])

HSP 1 Score: 106.3 bits (264), Expect = 3.4e-20
Identity = 50/57 (87.72%), Postives = 55/57 (96.49%), Query Frame = 1 

Query: 51  MGFIRSSFSFIVGTVFGIYVAQNYSVPNIRKLANTGILMAKHIEENYRKPKKREDDD 108
           MGFIRSSFSFI G+VFGIYVAQNY+VPNIRKLANTG+ MAKHIEENYRKPKKR+DD+
Sbjct: 1   MGFIRSSFSFIAGSVFGIYVAQNYNVPNIRKLANTGLAMAKHIEENYRKPKKRDDDE 57

[Close]
BLAST of CmoCh07G006790 vs. NCBI nr
Match: gi|747068916|ref|XP_011081234.1| (PREDICTED: uncharacterized protein LOC105164311 [Sesamum indicum])

HSP 1 Score: 103.2 bits (256), Expect = 2.9e-19
Identity = 47/57 (82.46%), Postives = 54/57 (94.74%), Query Frame = 1 

Query: 51  MGFIRSSFSFIVGTVFGIYVAQNYSVPNIRKLANTGILMAKHIEENYRKPKKREDDD 108
           MG I+SSFSFIVGT FG+YVAQNY+VPN+RKL NTG+L+AKHIEENYRKPKKR+DDD
Sbjct: 1   MGIIKSSFSFIVGTTFGVYVAQNYNVPNVRKLFNTGLLIAKHIEENYRKPKKRDDDD 57

[Close]
BLAST of CmoCh07G006790 vs. NCBI nr
Match: gi|694431243|ref|XP_009343060.1| (PREDICTED: uncharacterized protein LOC103935015 [Pyrus x bretschneideri])

HSP 1 Score: 99.8 bits (247), Expect = 3.2e-18
Identity = 45/57 (78.95%), Postives = 54/57 (94.74%), Query Frame = 1 

Query: 51  MGFIRSSFSFIVGTVFGIYVAQNYSVPNIRKLANTGILMAKHIEENYRKPKKREDDD 108
           MG IRSSFSF++GTVFG+YVAQNY VPNI+KL+ TG+L+AKHIEENYRKPKK+E+DD
Sbjct: 1   MGIIRSSFSFLMGTVFGVYVAQNYDVPNIQKLSTTGLLIAKHIEENYRKPKKKEEDD 57

[Close]
BLAST of CmoCh07G006790 vs. NCBI nr
Match: gi|225453967|ref|XP_002274232.1| (PREDICTED: uncharacterized protein LOC100266051 [Vitis vinifera])

HSP 1 Score: 99.4 bits (246), Expect = 4.1e-18
Identity = 45/57 (78.95%), Postives = 52/57 (91.23%), Query Frame = 1 

Query: 51  MGFIRSSFSFIVGTVFGIYVAQNYSVPNIRKLANTGILMAKHIEENYRKPKKREDDD 108
           MG IRSSF F+VGTV G+Y+AQNY+VPN+RKLANTG++MAKHIEENYRKPKK  DDD
Sbjct: 1   MGIIRSSFMFMVGTVCGVYIAQNYNVPNVRKLANTGLVMAKHIEENYRKPKKNRDDD 57

The following BLAST results are available for this feature:
BLAST of CmoCh07G006790 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh07G006790 vs. TrEMBL
Match NameE-valueIdentityDescription
F6I385_VITVI2.9e-1878.95Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0048g00610 PE=4 SV=... [more]
A0A059C1C4_EUCGR1.4e-1765.22Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_E00434 PE=4 ... [more]
B9SSH0_RICCO2.4e-1778.95Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1061850 PE=4 SV=1[more]
B9N3R9_POPTR3.2e-1775.44Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s00500g PE=4 SV=1[more]
A0A067KUH2_JATCU9.2e-1773.68Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03387 PE=4 SV=1[more]
BLAST of CmoCh07G006790 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G35736.11.5e-1875.00 unknown protein[more]
AT4G25225.17.0e-1667.27 unknown protein[more]
BLAST of CmoCh07G006790 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659079603|ref|XP_008440344.1|1.2e-2089.47PREDICTED: uncharacterized protein LOC103484824 [Cucumis melo][more]
gi|778718553|ref|XP_011657883.1|3.4e-2087.72PREDICTED: uncharacterized protein LOC101209935 [Cucumis sativus][more]
gi|747068916|ref|XP_011081234.1|2.9e-1982.46PREDICTED: uncharacterized protein LOC105164311 [Sesamum indicum][more]
gi|694431243|ref|XP_009343060.1|3.2e-1878.95PREDICTED: uncharacterized protein LOC103935015 [Pyrus x bretschneideri][more]
gi|225453967|ref|XP_002274232.1|4.1e-1878.95PREDICTED: uncharacterized protein LOC100266051 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR027854STMP1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh07G006790.1CmoCh07G006790.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027854Protein of unknown function DUF4535PFAMPF15054DUF4535coord: 56..100
score: 3.9
NoneNo IPR availablePANTHERPTHR33528FAMILY NOT NAMEDcoord: 51..107
score: 3.8
NoneNo IPR availablePANTHERPTHR33528:SF3SUBFAMILY NOT NAMEDcoord: 51..107
score: 3.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh07G006790Cucsa.102910Cucumber (Gy14) v1cgycmoB0233
CmoCh07G006790CmaCh03G009430Cucurbita maxima (Rimu)cmacmoB667
CmoCh07G006790CmaCh07G006680Cucurbita maxima (Rimu)cmacmoB875
CmoCh07G006790Cla014001Watermelon (97103) v1cmowmB816
CmoCh07G006790MELO3C007606Melon (DHL92) v3.5.1cmomeB793
CmoCh07G006790ClCG01G017260Watermelon (Charleston Gray)cmowcgB755
CmoCh07G006790CSPI06G28630Wild cucumber (PI 183967)cmocpiB873
CmoCh07G006790Lsi01G009250Bottle gourd (USVL1VR-Ls)cmolsiB774
CmoCh07G006790MELO3C007606.2Melon (DHL92) v3.6.1cmomedB896
CmoCh07G006790Cla97C01G016460Watermelon (97103) v2cmowmbB849
CmoCh07G006790Bhi03G000756Wax gourdcmowgoB1063
CmoCh07G006790Carg18568Silver-seed gourdcarcmoB0005
CmoCh07G006790Carg00811Silver-seed gourdcarcmoB0554
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh07G006790Silver-seed gourdcarcmoB0516
CmoCh07G006790Silver-seed gourdcarcmoB1048
CmoCh07G006790Cucumber (Chinese Long) v3cmocucB0990
CmoCh07G006790Cucumber (Chinese Long) v3cmocucB1006
CmoCh07G006790Cucumber (Chinese Long) v3cmocucB1019
CmoCh07G006790Watermelon (97103) v2cmowmbB872
CmoCh07G006790Watermelon (97103) v2cmowmbB876
CmoCh07G006790Wax gourdcmowgoB1044
CmoCh07G006790Wax gourdcmowgoB1078
CmoCh07G006790Cucurbita moschata (Rifu)cmocmoB037
CmoCh07G006790Cucurbita moschata (Rifu)cmocmoB164
CmoCh07G006790Cucurbita moschata (Rifu)cmocmoB296
CmoCh07G006790Cucurbita moschata (Rifu)cmocmoB376
CmoCh07G006790Cucurbita moschata (Rifu)cmocmoB455
CmoCh07G006790Cucurbita moschata (Rifu)cmocmoB477
CmoCh07G006790Cucumber (Gy14) v1cgycmoB0970
CmoCh07G006790Cucumber (Gy14) v1cgycmoB1095
CmoCh07G006790Cucurbita maxima (Rimu)cmacmoB065
CmoCh07G006790Cucurbita maxima (Rimu)cmacmoB204
CmoCh07G006790Wild cucumber (PI 183967)cmocpiB847
CmoCh07G006790Wild cucumber (PI 183967)cmocpiB849
CmoCh07G006790Wild cucumber (PI 183967)cmocpiB864
CmoCh07G006790Cucumber (Chinese Long) v2cmocuB837
CmoCh07G006790Cucumber (Chinese Long) v2cmocuB839
CmoCh07G006790Cucumber (Chinese Long) v2cmocuB856
CmoCh07G006790Cucumber (Chinese Long) v2cmocuB865
CmoCh07G006790Melon (DHL92) v3.5.1cmomeB773
CmoCh07G006790Melon (DHL92) v3.5.1cmomeB781
CmoCh07G006790Watermelon (Charleston Gray)cmowcgB774
CmoCh07G006790Watermelon (Charleston Gray)cmowcgB777
CmoCh07G006790Watermelon (97103) v1cmowmB807
CmoCh07G006790Watermelon (97103) v1cmowmB813
CmoCh07G006790Cucurbita pepo (Zucchini)cmocpeB806
CmoCh07G006790Cucurbita pepo (Zucchini)cmocpeB815
CmoCh07G006790Cucurbita pepo (Zucchini)cmocpeB817
CmoCh07G006790Cucurbita pepo (Zucchini)cmocpeB827
CmoCh07G006790Bottle gourd (USVL1VR-Ls)cmolsiB789
CmoCh07G006790Bottle gourd (USVL1VR-Ls)cmolsiB795
CmoCh07G006790Cucumber (Gy14) v2cgybcmoB249
CmoCh07G006790Cucumber (Gy14) v2cgybcmoB543
CmoCh07G006790Cucumber (Gy14) v2cgybcmoB843
CmoCh07G006790Melon (DHL92) v3.6.1cmomedB878
CmoCh07G006790Melon (DHL92) v3.6.1cmomedB885