CSPI06G28630 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI06G28630
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionBnaC04g56500D protein
LocationChr6 : 24968791 .. 24969943 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAATTAAATTCATACAATATTCAATAAAATTTAGTTGCTTCACATTAAACGCGCGTTTCACGTAGAGTCGACGGAGAAAGATCGAGAGTCAGACCTAGAGACATCGAGAAGCAGGGAGTGAAGGGAAGGACAACCGCTACCGGAGACTAACGACGGGCGACTTCAATCCATAAGCCCTAGTAGAAGAGGGGGAGATCGCCGACGAGGGAAGAGCGCACAAGTCTCTGTGGCTGATTTGATTAATCCACTGCCCTAAAATTTCCCGATTCTCTTTCCACTTGCCGATAATTTCAGGCTCCGGCGAAAGAGAAGGACGCCGATGGGCTTTATCAGAAGTAGCTTCTCATTTATAGCGGGATCTGTGTTCGGGATTTACGTGGCTCAAAATTACAACGTCCCCAATATCAGGAAGCTCGCAAATACTGGGCTTGCAATGGCCAAGCACATCGAAGAGAATTACAGGAAGCCAAAGAAGAGGGATGATGATGAATGATTGGATGATTTACAATCCAGGTTCCCCCTTTTGACATACTATTGAAGTAGTGCTTGTTACTTCTGGATCTTTAGGCATTGAATACACGTTGAAATTTTATGGTTTTATATACAGGAGACTGATTTTTTTTCTCTTAAGCAATGTAACGAGTTTCAATCACATAATTGGAGTTTGGAATTTCTTCTCAGATGAATGCATCATTTTTGGTCTTGGATGCTATTGTGGTAAATAAATTATAAGTAATGCAACATTTTCTAAAGCCCTAGGTATGCATTTGATTCCTTGTAAATATTTGCTACCGTTTGGTGCATTTTGGCCGGAATACTCTTTAATGTTGTATTGGGGAAGACCTTTGTGGGATATATTTGTGCATTTTTTTCCCGATTTTCTATCCATGGAACTTGTATAATATTTCGATGACTGCAGTTATATAGTGTGTGTCTGTGTAAGAAGCAAACTTCATTGATATATGGAGTTTATAAAAGAAGGGCAAGTAGCCCAAGCCAAAGGAGTTATAGGAGACTTGTATTGGTGTATCAAGTAAGGGGATTGTGATACAAGTGCATGTTTTTAACTTTGTACCATGAAACTTGAAAGAGAGAGAGGTGGATGGAACCTTTTAATGTAGATTGGATTTGGATTAAATGATCTCAAGTTGGC

mRNA sequence

ATGGGCTTTATCAGAAGTAGCTTCTCATTTATAGCGGGATCTGTGTTCGGGATTTACGTGGCTCAAAATTACAACGTCCCCAATATCAGGAAGCTCGCAAATACTGGGCTTGCAATGGCCAAGCACATCGAAGAGAATTACAGGAAGCCAAAGAAGAGGGATGATGATGAATGA

Coding sequence (CDS)

ATGGGCTTTATCAGAAGTAGCTTCTCATTTATAGCGGGATCTGTGTTCGGGATTTACGTGGCTCAAAATTACAACGTCCCCAATATCAGGAAGCTCGCAAATACTGGGCTTGCAATGGCCAAGCACATCGAAGAGAATTACAGGAAGCCAAAGAAGAGGGATGATGATGAATGA
Homology
[Close]
BLAST of CSPI06G28630 vs. TrEMBL
Match: B9N3R9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s00500g PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.0e-17
Identity = 44/57 (77.19%), Postives = 50/57 (87.72%), Query Frame = 1 

Query: 1  MGFIRSSFSFIAGSVFGIYVAQNYNVPNIRKLANTGLAMAKHIEENYRKPKKRDDDE 58
          MG IRS FSFIAG+VFG+YVAQNYNVPN+RK+ NTGL +A HIEE YRKPKKRD D+
Sbjct: 1  MGIIRSGFSFIAGTVFGVYVAQNYNVPNVRKITNTGLLIANHIEETYRKPKKRDGDD 57

[Close]
BLAST of CSPI06G28630 vs. TrEMBL
Match: F6I385_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0048g00610 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.3e-17
Identity = 44/57 (77.19%), Postives = 50/57 (87.72%), Query Frame = 1 

Query: 1  MGFIRSSFSFIAGSVFGIYVAQNYNVPNIRKLANTGLAMAKHIEENYRKPKKRDDDE 58
          MG IRSSF F+ G+V G+Y+AQNYNVPN+RKLANTGL MAKHIEENYRKPKK  DD+
Sbjct: 1  MGIIRSSFMFMVGTVCGVYIAQNYNVPNVRKLANTGLVMAKHIEENYRKPKKNRDDD 57

[Close]
BLAST of CSPI06G28630 vs. TrEMBL
Match: B9SSH0_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1061850 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 2.2e-17
Identity = 45/57 (78.95%), Postives = 49/57 (85.96%), Query Frame = 1 

Query: 1  MGFIRSSFSFIAGSVFGIYVAQNYNVPNIRKLANTGLAMAKHIEENYRKPKKRDDDE 58
          MG  RS FSFI G+V GIYVAQNYNVPNIRKL NTGL +AKHIEE YRKPKKRD+D+
Sbjct: 1  MGIFRSGFSFIVGTVCGIYVAQNYNVPNIRKLTNTGLVIAKHIEETYRKPKKRDEDD 57

[Close]
BLAST of CSPI06G28630 vs. TrEMBL
Match: A0A067KUH2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03387 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 2.9e-17
Identity = 43/57 (75.44%), Postives = 51/57 (89.47%), Query Frame = 1 

Query: 1  MGFIRSSFSFIAGSVFGIYVAQNYNVPNIRKLANTGLAMAKHIEENYRKPKKRDDDE 58
          MG IRS FSFI G++FG+Y+AQNYNVPN++KLA+TGL  AKHIEE YRKPKKR+DDE
Sbjct: 1  MGIIRSGFSFITGTMFGVYLAQNYNVPNLKKLADTGLLFAKHIEETYRKPKKRNDDE 57

[Close]
BLAST of CSPI06G28630 vs. TrEMBL
Match: A0A059C1C4_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_E00434 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 2.9e-17
Identity = 42/57 (73.68%), Postives = 50/57 (87.72%), Query Frame = 1 

Query: 1  MGFIRSSFSFIAGSVFGIYVAQNYNVPNIRKLANTGLAMAKHIEENYRKPKKRDDDE 58
          MG IRS FSF+ G+ FG+Y+AQNYNVPNI+KL  TGL +AKHIEENYR+PKKRDDD+
Sbjct: 25 MGLIRSCFSFLTGTAFGVYLAQNYNVPNIKKLTETGLVIAKHIEENYRRPKKRDDDD 81

[Close]
BLAST of CSPI06G28630 vs. TAIR10
Match: AT2G35736.1 (AT2G35736.1 unknown protein)

HSP 1 Score: 94.0 bits (232), Expect = 3.3e-20
Identity = 43/54 (79.63%), Postives = 47/54 (87.04%), Query Frame = 1 

Query: 1  MGFIRSSFSFIAGSVFGIYVAQNYNVPNIRKLANTGLAMAKHIEENYRKPKKRD 55
          MG  RS FSFI GSVFG+Y+AQNYNVPNIRKL NTGL +AKH+EENYRKPKK D
Sbjct: 1  MGIFRSCFSFITGSVFGVYLAQNYNVPNIRKLTNTGLVVAKHVEENYRKPKKDD 54

[Close]
BLAST of CSPI06G28630 vs. TAIR10
Match: AT4G25225.1 (AT4G25225.1 unknown protein)

HSP 1 Score: 82.0 bits (201), Expect = 1.3e-16
Identity = 38/55 (69.09%), Postives = 45/55 (81.82%), Query Frame = 1 

Query: 1  MGFIRSSFSFIAGSVFGIYVAQNYNVPNIRKLANTGLAMAKHIEENYRKPKKRDD 56
          MG IRSSFSFI G+V GIY+AQ YNVPNI+KL +  ++MAK +EE YRKPK RDD
Sbjct: 1  MGIIRSSFSFIMGTVCGIYIAQTYNVPNIKKLGHCAVSMAKQVEEKYRKPKSRDD 55

[Close]
BLAST of CSPI06G28630 vs. NCBI nr
Match: gi|778718553|ref|XP_011657883.1| (PREDICTED: uncharacterized protein LOC101209935 [Cucumis sativus])

HSP 1 Score: 116.3 bits (290), Expect = 1.8e-23
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 1 

Query: 1  MGFIRSSFSFIAGSVFGIYVAQNYNVPNIRKLANTGLAMAKHIEENYRKPKKRDDDE 58
          MGFIRSSFSFIAGSVFGIYVAQNYNVPNIRKLANTGLAMAKHIEENYRKPKKRDDDE
Sbjct: 1  MGFIRSSFSFIAGSVFGIYVAQNYNVPNIRKLANTGLAMAKHIEENYRKPKKRDDDE 57

[Close]
BLAST of CSPI06G28630 vs. NCBI nr
Match: gi|659079603|ref|XP_008440344.1| (PREDICTED: uncharacterized protein LOC103484824 [Cucumis melo])

HSP 1 Score: 115.2 bits (287), Expect = 3.9e-23
Identity = 56/57 (98.25%), Postives = 57/57 (100.00%), Query Frame = 1 

Query: 1  MGFIRSSFSFIAGSVFGIYVAQNYNVPNIRKLANTGLAMAKHIEENYRKPKKRDDDE 58
          MGFIRSSFSFIAGSVFGIYVAQNYNVPNIRKLANTGLAMAKHIEENYRKPKKRDDD+
Sbjct: 1  MGFIRSSFSFIAGSVFGIYVAQNYNVPNIRKLANTGLAMAKHIEENYRKPKKRDDDD 57

[Close]
BLAST of CSPI06G28630 vs. NCBI nr
Match: gi|747068916|ref|XP_011081234.1| (PREDICTED: uncharacterized protein LOC105164311 [Sesamum indicum])

HSP 1 Score: 100.9 bits (250), Expect = 7.7e-19
Identity = 46/57 (80.70%), Postives = 52/57 (91.23%), Query Frame = 1 

Query: 1  MGFIRSSFSFIAGSVFGIYVAQNYNVPNIRKLANTGLAMAKHIEENYRKPKKRDDDE 58
          MG I+SSFSFI G+ FG+YVAQNYNVPN+RKL NTGL +AKHIEENYRKPKKRDDD+
Sbjct: 1  MGIIKSSFSFIVGTTFGVYVAQNYNVPNVRKLFNTGLLIAKHIEENYRKPKKRDDDD 57

[Close]
BLAST of CSPI06G28630 vs. NCBI nr
Match: gi|848885980|ref|XP_012843234.1| (PREDICTED: uncharacterized protein LOC105963385 [Erythranthe guttata])

HSP 1 Score: 97.8 bits (242), Expect = 6.5e-18
Identity = 45/57 (78.95%), Postives = 50/57 (87.72%), Query Frame = 1 

Query: 1  MGFIRSSFSFIAGSVFGIYVAQNYNVPNIRKLANTGLAMAKHIEENYRKPKKRDDDE 58
          MG IRS FSF+ G+ FG+Y AQNYNVPNI+KL NTGL +AKHIEENYRKPKKRDDDE
Sbjct: 1  MGIIRSGFSFMMGTAFGVYAAQNYNVPNIKKLFNTGLLIAKHIEENYRKPKKRDDDE 57

[Close]
BLAST of CSPI06G28630 vs. NCBI nr
Match: gi|747048224|ref|XP_011070113.1| (PREDICTED: uncharacterized protein LOC105155838 [Sesamum indicum])

HSP 1 Score: 97.4 bits (241), Expect = 8.5e-18
Identity = 44/57 (77.19%), Postives = 51/57 (89.47%), Query Frame = 1 

Query: 1  MGFIRSSFSFIAGSVFGIYVAQNYNVPNIRKLANTGLAMAKHIEENYRKPKKRDDDE 58
          MG +RSSF+F+ G+ FG+YVAQNYNVPNIRKL NTG+ +A HIEENYRKPKKRDDDE
Sbjct: 1  MGIVRSSFTFMVGTAFGVYVAQNYNVPNIRKLFNTGVLIATHIEENYRKPKKRDDDE 57

The following BLAST results are available for this feature:
BLAST of CSPI06G28630 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI06G28630 vs. TrEMBL
Match NameE-valueIdentityDescription
B9N3R9_POPTR1.0e-1777.19Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s00500g PE=4 SV=1[more]
F6I385_VITVI1.3e-1777.19Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0048g00610 PE=4 SV=... [more]
B9SSH0_RICCO2.2e-1778.95Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1061850 PE=4 SV=1[more]
A0A067KUH2_JATCU2.9e-1775.44Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03387 PE=4 SV=1[more]
A0A059C1C4_EUCGR2.9e-1773.68Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_E00434 PE=4 ... [more]
BLAST of CSPI06G28630 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G35736.13.3e-2079.63 unknown protein[more]
AT4G25225.11.3e-1669.09 unknown protein[more]
BLAST of CSPI06G28630 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778718553|ref|XP_011657883.1|1.8e-23100.00PREDICTED: uncharacterized protein LOC101209935 [Cucumis sativus][more]
gi|659079603|ref|XP_008440344.1|3.9e-2398.25PREDICTED: uncharacterized protein LOC103484824 [Cucumis melo][more]
gi|747068916|ref|XP_011081234.1|7.7e-1980.70PREDICTED: uncharacterized protein LOC105164311 [Sesamum indicum][more]
gi|848885980|ref|XP_012843234.1|6.5e-1878.95PREDICTED: uncharacterized protein LOC105963385 [Erythranthe guttata][more]
gi|747048224|ref|XP_011070113.1|8.5e-1877.19PREDICTED: uncharacterized protein LOC105155838 [Sesamum indicum][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR027854STMP1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G28630.1CSPI06G28630.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027854Protein of unknown function DUF4535PFAMPF15054DUF4535coord: 6..50
score: 1.1
NoneNo IPR availablePANTHERPTHR33528FAMILY NOT NAMEDcoord: 1..57
score: 1.7
NoneNo IPR availablePANTHERPTHR33528:SF3SUBFAMILY NOT NAMEDcoord: 1..57
score: 1.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI06G28630Cla014001Watermelon (97103) v1cpiwmB519
CSPI06G28630MELO3C007606Melon (DHL92) v3.5.1cpimeB508
CSPI06G28630ClCG01G017280Watermelon (Charleston Gray)cpiwcgB453
CSPI06G28630Lsi01G009250Bottle gourd (USVL1VR-Ls)cpilsiB439
CSPI06G28630MELO3C007606.2Melon (DHL92) v3.6.1cpimedB493
CSPI06G28630Cla97C01G016460Watermelon (97103) v2cpiwmbB433
CSPI06G28630Bhi03G000756Wax gourdcpiwgoB626
CSPI06G28630Cucsa.102910Cucumber (Gy14) v1cgycpiB122
CSPI06G28630CmaCh07G006680Cucurbita maxima (Rimu)cmacpiB893
CSPI06G28630CmaCh03G009430Cucurbita maxima (Rimu)cmacpiB689
CSPI06G28630CmoCh07G006790Cucurbita moschata (Rifu)cmocpiB873
CSPI06G28630Carg18568Silver-seed gourdcarcpiB0003
CSPI06G28630Carg00811Silver-seed gourdcarcpiB0446
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI06G28630Melon (DHL92) v3.6.1cpimedB430
CSPI06G28630Melon (DHL92) v3.6.1cpimedB461
CSPI06G28630Cucumber (Gy14) v2cgybcpiB083
CSPI06G28630Cucumber (Gy14) v2cgybcpiB287
CSPI06G28630Silver-seed gourdcarcpiB0212
CSPI06G28630Cucumber (Chinese Long) v3cpicucB327
CSPI06G28630Cucumber (Chinese Long) v3cpicucB333
CSPI06G28630Cucumber (Chinese Long) v3cpicucB363
CSPI06G28630Watermelon (97103) v2cpiwmbB520
CSPI06G28630Wax gourdcpiwgoB582
CSPI06G28630Wild cucumber (PI 183967)cpicpiB083
CSPI06G28630Wild cucumber (PI 183967)cpicpiB084
CSPI06G28630Cucumber (Gy14) v1cgycpiB581
CSPI06G28630Cucurbita maxima (Rimu)cmacpiB197
CSPI06G28630Cucurbita maxima (Rimu)cmacpiB566
CSPI06G28630Cucurbita maxima (Rimu)cmacpiB631
CSPI06G28630Cucurbita maxima (Rimu)cmacpiB820
CSPI06G28630Cucurbita moschata (Rifu)cmocpiB179
CSPI06G28630Cucurbita moschata (Rifu)cmocpiB554
CSPI06G28630Cucurbita moschata (Rifu)cmocpiB623
CSPI06G28630Cucurbita moschata (Rifu)cmocpiB681
CSPI06G28630Cucurbita moschata (Rifu)cmocpiB806
CSPI06G28630Cucumber (Chinese Long) v2cpicuB277
CSPI06G28630Cucumber (Chinese Long) v2cpicuB313
CSPI06G28630Melon (DHL92) v3.5.1cpimeB470
CSPI06G28630Watermelon (Charleston Gray)cpiwcgB529
CSPI06G28630Watermelon (97103) v1cpiwmB476
CSPI06G28630Cucurbita pepo (Zucchini)cpecpiB080
CSPI06G28630Cucurbita pepo (Zucchini)cpecpiB299
CSPI06G28630Cucurbita pepo (Zucchini)cpecpiB503
CSPI06G28630Cucurbita pepo (Zucchini)cpecpiB764
CSPI06G28630Cucurbita pepo (Zucchini)cpecpiB843
CSPI06G28630Bottle gourd (USVL1VR-Ls)cpilsiB428
CSPI06G28630Bottle gourd (USVL1VR-Ls)cpilsiB482