CmaCh07G006680 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh07G006680
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionCoffea canephora DH200=94 genomic scaffold, scaffold_41
LocationCma_Chr07 : 2921500 .. 2923763 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCGGAGCGTCCATAGTCGACCTGTATCGAGCTGGAAACGGGAAGCGTGAAGAAACTGAGACTCTCGGAAACGGCGTGGAGGATATATCCATTGAAGAACGGTGTTCACTTGCCGCTAATGTACGTGCGTTTCACACGTGTGGTCAAACGCCTTGCCGTGATACTATTGGTTGAGTGCGGTGACGTGTACTGGAAAAACGACAACATGCCCTACAGTTTTGTTTCTCTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAGAAAGGTTTTGTATTTTGATTAGTTTTTTTGGCCAACAATACACGACACAACTTAATCTTTTCAAAAGTCTCCAATTTTTTCTTTAATAATTTAACATCTGTCATTATTTCTTTTCGATTACTTTGTTATAATTTGTTTAATTAAATTTATTATTTTATTGATAACGATTTCACGAGATTCAATAATCTAATTTTTAGATATCATACTATTATAAGGTTCGTAATTCTTAAAATACTATCAAGAGAGGCTATGTGTATACTTTGTTGTATACTTTGTTCAAATGAAGGATTGTTGGGAGTAGTTAATTTAGGAAATTATCGCGGGTCATGATTCCTAACACTAATCACTCCCTATCCGCCATGACTGAAGCCATTGCCTCCATTTTTCGACTGAATCTTTTCGTTAAGATCCTTTAGGTTTTTTATACTCATTCAAGTTTCAAATTTGTATTTCATCTATGTAATTTGAGTTGAATCGTAAAAAAAAAAAATAATAATAAAAATATCTTTAGTAGCTCAAATTTCAACCGTTTTTTAATTATTATGGTCATGCTATATTTTTAAAAATGTCATAAAATAAAATAAAACTTTTAAATTAATGTTGAATGGATGAAATTAAGCTAAAAAAATTAGATGGGGTGACTACAATATTGTCTCATTGAAATTGGTAGAATTGGCTGGCCGCCGGTTGCATGAAGCCCGGCGAAATTCCGGCCAAACTGGCCGGGTTTCTTTAAATTTCTGCTGGGTTTCCCGTAATCCGTCTGGAATGGGCCAAACTTCAGCCGAATTCATCAAATCTAGCCGACAACTTCGGACGAGATTAATAAAAAAAATATAGCTGAAATGAGCCAAATTTATGCTGATATTCTAATTTTCTTTTTTCAATTTTTAATTAATGGTTCATTAATTTATTCACATACGATGTAACCCTCACTAGAATATCCTCATTCATCAAACAGTATATATATATATATATATATATACACGCATTTAATCTCAAAATATTTATTTTTATTATCAAATATACATTATACCAAATATATATATATATATATATATATATATATATACACGCATTTAATCTCAAAATATTTATTTTTATTATCAAATATACATTATACCAAATAACACGTAACTGTATCAAAGCAAAAATATTCAATGTTTTTTATTTTTTAATACGTCAGGTTTCCCTTTAAGTAATACATTACAAAAGGCTCGAGTATTAGTGACTACTAGTTCTAAATAATCCAAAACATTAAGTGACTATTAGTTGTAAATAATCCAAAACATTAAGGAAAAAATTTCAAAAATAATTTTAAATTATCATAAGTTTTTTTAAAGTAAATTATATCATACTAAATCTAATTTACTCATACTAAATTTCCAGCAACATTAATTTAATAACATAATGATTATAAAAATATATTTTTCATTCGGGCGTTGCACTTTAAGAATTTAAAGACTTTTAAGGGCACAAAAGATATTTATATTTTTAAAATGGGCCTTTTTCCAAAGGGAAAACATTTAGAGAGGGAGAGACCGACGACGAAGAACGCGAGAGGGTGAGCGAGAGAGAGATCGACGAACGCAGAGTGGAAGGGTAAGAGATCGAGACTGAAGACGGGCGATTGTAAGCTATGAACCCTAATTTGAGAGTTTGAGTGCGCCGACGAGGGGGGAGAGCGTGCAAGTCTCTTTGGCTGAGCTGATTAATTTAGTGCCCTAAAACACCAATTCCTATCGTTTTTCCACTTGCCGATAATTTCAGGCTCCGGCGAAAGAGAGACGCCGATGGGCTTTATCAGAAGTAGCTTCTCCTTTATAGTGGGAACGGTGTTTGGCATTTACGTGGCCCAAAATTACAGTGTTCCCAATATCAGGAAGCTCGCCAATACTGGGATTCTGATGGCCAAACACATCGAAGAGAACTACAGGAAGCCAAAGAAGCGGGAGGACGATGATTGA

mRNA sequence

ATGATCGGAGCGTCCATAGTCGACCTGTATCGAGCTGGAAACGGGAAGCGTGAAGAAACTGAGACTCTCGGAAACGGCGTGGAGGATATATCCATTGAAGAACGGTGTTCACTTGCCGCTAATGTACGCTCCGGCGAAAGAGAGACGCCGATGGGCTTTATCAGAAGTAGCTTCTCCTTTATAGTGGGAACGGTGTTTGGCATTTACGTGGCCCAAAATTACAGTGTTCCCAATATCAGGAAGCTCGCCAATACTGGGATTCTGATGGCCAAACACATCGAAGAGAACTACAGGAAGCCAAAGAAGCGGGAGGACGATGATTGA

Coding sequence (CDS)

ATGATCGGAGCGTCCATAGTCGACCTGTATCGAGCTGGAAACGGGAAGCGTGAAGAAACTGAGACTCTCGGAAACGGCGTGGAGGATATATCCATTGAAGAACGGTGTTCACTTGCCGCTAATGTACGCTCCGGCGAAAGAGAGACGCCGATGGGCTTTATCAGAAGTAGCTTCTCCTTTATAGTGGGAACGGTGTTTGGCATTTACGTGGCCCAAAATTACAGTGTTCCCAATATCAGGAAGCTCGCCAATACTGGGATTCTGATGGCCAAACACATCGAAGAGAACTACAGGAAGCCAAAGAAGCGGGAGGACGATGATTGA

Protein sequence

MIGASIVDLYRAGNGKREETETLGNGVEDISIEERCSLAANVRSGERETPMGFIRSSFSFIVGTVFGIYVAQNYSVPNIRKLANTGILMAKHIEENYRKPKKREDDD
Homology
[Close]
BLAST of CmaCh07G006680 vs. TrEMBL
Match: F6I385_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0048g00610 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.9e-18
Identity = 45/57 (78.95%), Postives = 52/57 (91.23%), Query Frame = 1 

Query: 51  MGFIRSSFSFIVGTVFGIYVAQNYSVPNIRKLANTGILMAKHIEENYRKPKKREDDD 108
           MG IRSSF F+VGTV G+Y+AQNY+VPN+RKLANTG++MAKHIEENYRKPKK  DDD
Sbjct: 1   MGIIRSSFMFMVGTVCGVYIAQNYNVPNVRKLANTGLVMAKHIEENYRKPKKNRDDD 57

[Close]
BLAST of CmaCh07G006680 vs. TrEMBL
Match: A0A059C1C4_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_E00434 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.4e-17
Identity = 45/69 (65.22%), Postives = 56/69 (81.16%), Query Frame = 1 

Query: 40  ANVRSGERETP-MGFIRSSFSFIVGTVFGIYVAQNYSVPNIRKLANTGILMAKHIEENYR 99
           +  RS  RE   MG IRS FSF+ GT FG+Y+AQNY+VPNI+KL  TG+++AKHIEENYR
Sbjct: 13  SEARSASREKKRMGLIRSCFSFLTGTAFGVYLAQNYNVPNIKKLTETGLVIAKHIEENYR 72

Query: 100 KPKKREDDD 108
           +PKKR+DDD
Sbjct: 73  RPKKRDDDD 81

[Close]
BLAST of CmaCh07G006680 vs. TrEMBL
Match: B9SSH0_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1061850 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.4e-17
Identity = 45/57 (78.95%), Postives = 51/57 (89.47%), Query Frame = 1 

Query: 51  MGFIRSSFSFIVGTVFGIYVAQNYSVPNIRKLANTGILMAKHIEENYRKPKKREDDD 108
           MG  RS FSFIVGTV GIYVAQNY+VPNIRKL NTG+++AKHIEE YRKPKKR++DD
Sbjct: 1   MGIFRSGFSFIVGTVCGIYVAQNYNVPNIRKLTNTGLVIAKHIEETYRKPKKRDEDD 57

[Close]
BLAST of CmaCh07G006680 vs. TrEMBL
Match: B9N3R9_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s00500g PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 3.2e-17
Identity = 43/57 (75.44%), Postives = 50/57 (87.72%), Query Frame = 1 

Query: 51  MGFIRSSFSFIVGTVFGIYVAQNYSVPNIRKLANTGILMAKHIEENYRKPKKREDDD 108
           MG IRS FSFI GTVFG+YVAQNY+VPN+RK+ NTG+L+A HIEE YRKPKKR+ DD
Sbjct: 1   MGIIRSGFSFIAGTVFGVYVAQNYNVPNVRKITNTGLLIANHIEETYRKPKKRDGDD 57

[Close]
BLAST of CmaCh07G006680 vs. TrEMBL
Match: A0A067KUH2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03387 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 9.2e-17
Identity = 42/57 (73.68%), Postives = 51/57 (89.47%), Query Frame = 1 

Query: 51  MGFIRSSFSFIVGTVFGIYVAQNYSVPNIRKLANTGILMAKHIEENYRKPKKREDDD 108
           MG IRS FSFI GT+FG+Y+AQNY+VPN++KLA+TG+L AKHIEE YRKPKKR DD+
Sbjct: 1   MGIIRSGFSFITGTMFGVYLAQNYNVPNLKKLADTGLLFAKHIEETYRKPKKRNDDE 57

[Close]
BLAST of CmaCh07G006680 vs. TAIR10
Match: AT2G35736.1 (AT2G35736.1 unknown protein)

HSP 1 Score: 89.4 bits (220), Expect = 1.5e-18
Identity = 39/52 (75.00%), Postives = 47/52 (90.38%), Query Frame = 1 

Query: 51  MGFIRSSFSFIVGTVFGIYVAQNYSVPNIRKLANTGILMAKHIEENYRKPKK 103
           MG  RS FSFI G+VFG+Y+AQNY+VPNIRKL NTG+++AKH+EENYRKPKK
Sbjct: 1   MGIFRSCFSFITGSVFGVYLAQNYNVPNIRKLTNTGLVVAKHVEENYRKPKK 52

[Close]
BLAST of CmaCh07G006680 vs. TAIR10
Match: AT4G25225.1 (AT4G25225.1 unknown protein)

HSP 1 Score: 80.5 bits (197), Expect = 7.0e-16
Identity = 37/55 (67.27%), Postives = 45/55 (81.82%), Query Frame = 1 

Query: 51  MGFIRSSFSFIVGTVFGIYVAQNYSVPNIRKLANTGILMAKHIEENYRKPKKRED 106
           MG IRSSFSFI+GTV GIY+AQ Y+VPNI+KL +  + MAK +EE YRKPK R+D
Sbjct: 1   MGIIRSSFSFIMGTVCGIYIAQTYNVPNIKKLGHCAVSMAKQVEEKYRKPKSRDD 55

[Close]
BLAST of CmaCh07G006680 vs. NCBI nr
Match: gi|659079603|ref|XP_008440344.1| (PREDICTED: uncharacterized protein LOC103484824 [Cucumis melo])

HSP 1 Score: 107.8 bits (268), Expect = 1.2e-20
Identity = 51/57 (89.47%), Postives = 55/57 (96.49%), Query Frame = 1 

Query: 51  MGFIRSSFSFIVGTVFGIYVAQNYSVPNIRKLANTGILMAKHIEENYRKPKKREDDD 108
           MGFIRSSFSFI G+VFGIYVAQNY+VPNIRKLANTG+ MAKHIEENYRKPKKR+DDD
Sbjct: 1   MGFIRSSFSFIAGSVFGIYVAQNYNVPNIRKLANTGLAMAKHIEENYRKPKKRDDDD 57

[Close]
BLAST of CmaCh07G006680 vs. NCBI nr
Match: gi|778718553|ref|XP_011657883.1| (PREDICTED: uncharacterized protein LOC101209935 [Cucumis sativus])

HSP 1 Score: 106.3 bits (264), Expect = 3.4e-20
Identity = 50/57 (87.72%), Postives = 55/57 (96.49%), Query Frame = 1 

Query: 51  MGFIRSSFSFIVGTVFGIYVAQNYSVPNIRKLANTGILMAKHIEENYRKPKKREDDD 108
           MGFIRSSFSFI G+VFGIYVAQNY+VPNIRKLANTG+ MAKHIEENYRKPKKR+DD+
Sbjct: 1   MGFIRSSFSFIAGSVFGIYVAQNYNVPNIRKLANTGLAMAKHIEENYRKPKKRDDDE 57

[Close]
BLAST of CmaCh07G006680 vs. NCBI nr
Match: gi|747068916|ref|XP_011081234.1| (PREDICTED: uncharacterized protein LOC105164311 [Sesamum indicum])

HSP 1 Score: 103.2 bits (256), Expect = 2.9e-19
Identity = 47/57 (82.46%), Postives = 54/57 (94.74%), Query Frame = 1 

Query: 51  MGFIRSSFSFIVGTVFGIYVAQNYSVPNIRKLANTGILMAKHIEENYRKPKKREDDD 108
           MG I+SSFSFIVGT FG+YVAQNY+VPN+RKL NTG+L+AKHIEENYRKPKKR+DDD
Sbjct: 1   MGIIKSSFSFIVGTTFGVYVAQNYNVPNVRKLFNTGLLIAKHIEENYRKPKKRDDDD 57

[Close]
BLAST of CmaCh07G006680 vs. NCBI nr
Match: gi|694431243|ref|XP_009343060.1| (PREDICTED: uncharacterized protein LOC103935015 [Pyrus x bretschneideri])

HSP 1 Score: 99.8 bits (247), Expect = 3.2e-18
Identity = 45/57 (78.95%), Postives = 54/57 (94.74%), Query Frame = 1 

Query: 51  MGFIRSSFSFIVGTVFGIYVAQNYSVPNIRKLANTGILMAKHIEENYRKPKKREDDD 108
           MG IRSSFSF++GTVFG+YVAQNY VPNI+KL+ TG+L+AKHIEENYRKPKK+E+DD
Sbjct: 1   MGIIRSSFSFLMGTVFGVYVAQNYDVPNIQKLSTTGLLIAKHIEENYRKPKKKEEDD 57

[Close]
BLAST of CmaCh07G006680 vs. NCBI nr
Match: gi|225453967|ref|XP_002274232.1| (PREDICTED: uncharacterized protein LOC100266051 [Vitis vinifera])

HSP 1 Score: 99.4 bits (246), Expect = 4.1e-18
Identity = 45/57 (78.95%), Postives = 52/57 (91.23%), Query Frame = 1 

Query: 51  MGFIRSSFSFIVGTVFGIYVAQNYSVPNIRKLANTGILMAKHIEENYRKPKKREDDD 108
           MG IRSSF F+VGTV G+Y+AQNY+VPN+RKLANTG++MAKHIEENYRKPKK  DDD
Sbjct: 1   MGIIRSSFMFMVGTVCGVYIAQNYNVPNVRKLANTGLVMAKHIEENYRKPKKNRDDD 57

The following BLAST results are available for this feature:
BLAST of CmaCh07G006680 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh07G006680 vs. TrEMBL
Match NameE-valueIdentityDescription
F6I385_VITVI2.9e-1878.95Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0048g00610 PE=4 SV=... [more]
A0A059C1C4_EUCGR1.4e-1765.22Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_E00434 PE=4 ... [more]
B9SSH0_RICCO2.4e-1778.95Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1061850 PE=4 SV=1[more]
B9N3R9_POPTR3.2e-1775.44Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s00500g PE=4 SV=1[more]
A0A067KUH2_JATCU9.2e-1773.68Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03387 PE=4 SV=1[more]
BLAST of CmaCh07G006680 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G35736.11.5e-1875.00 unknown protein[more]
AT4G25225.17.0e-1667.27 unknown protein[more]
BLAST of CmaCh07G006680 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659079603|ref|XP_008440344.1|1.2e-2089.47PREDICTED: uncharacterized protein LOC103484824 [Cucumis melo][more]
gi|778718553|ref|XP_011657883.1|3.4e-2087.72PREDICTED: uncharacterized protein LOC101209935 [Cucumis sativus][more]
gi|747068916|ref|XP_011081234.1|2.9e-1982.46PREDICTED: uncharacterized protein LOC105164311 [Sesamum indicum][more]
gi|694431243|ref|XP_009343060.1|3.2e-1878.95PREDICTED: uncharacterized protein LOC103935015 [Pyrus x bretschneideri][more]
gi|225453967|ref|XP_002274232.1|4.1e-1878.95PREDICTED: uncharacterized protein LOC100266051 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR027854STMP1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh07G006680.1CmaCh07G006680.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027854Protein of unknown function DUF4535PFAMPF15054DUF4535coord: 56..100
score: 3.9
NoneNo IPR availablePANTHERPTHR33528FAMILY NOT NAMEDcoord: 51..107
score: 3.8
NoneNo IPR availablePANTHERPTHR33528:SF3SUBFAMILY NOT NAMEDcoord: 51..107
score: 3.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh07G006680Cucsa.102910Cucumber (Gy14) v1cgycmaB0235
CmaCh07G006680Cla014001Watermelon (97103) v1cmawmB826
CmaCh07G006680MELO3C007606Melon (DHL92) v3.5.1cmameB809
CmaCh07G006680ClCG01G017260Watermelon (Charleston Gray)cmawcgB754
CmaCh07G006680CSPI06G28630Wild cucumber (PI 183967)cmacpiB893
CmaCh07G006680CmoCh07G006790Cucurbita moschata (Rifu)cmacmoB875
CmaCh07G006680Lsi01G009250Bottle gourd (USVL1VR-Ls)cmalsiB786
CmaCh07G006680MELO3C007606.2Melon (DHL92) v3.6.1cmamedB907
CmaCh07G006680Cla97C01G016460Watermelon (97103) v2cmawmbB875
CmaCh07G006680Bhi03G000756Wax gourdcmawgoB1070
CmaCh07G006680Carg18568Silver-seed gourdcarcmaB0004
CmaCh07G006680Carg00811Silver-seed gourdcarcmaB0571
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh07G006680CmaCh03G009430Cucurbita maxima (Rimu)cmacmaB523
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh07G006680Cucumber (Chinese Long) v3cmacucB1006
CmaCh07G006680Cucumber (Chinese Long) v3cmacucB1022
CmaCh07G006680Cucumber (Chinese Long) v3cmacucB1035
CmaCh07G006680Watermelon (97103) v2cmawmbB902
CmaCh07G006680Watermelon (97103) v2cmawmbB906
CmaCh07G006680Wax gourdcmawgoB1051
CmaCh07G006680Wax gourdcmawgoB1084
CmaCh07G006680Cucurbita maxima (Rimu)cmacmaB071
CmaCh07G006680Cucurbita maxima (Rimu)cmacmaB206
CmaCh07G006680Cucurbita maxima (Rimu)cmacmaB436
CmaCh07G006680Cucumber (Gy14) v1cgycmaB0968
CmaCh07G006680Cucumber (Gy14) v1cgycmaB1096
CmaCh07G006680Cucurbita moschata (Rifu)cmacmoB841
CmaCh07G006680Cucurbita moschata (Rifu)cmacmoB845
CmaCh07G006680Cucurbita moschata (Rifu)cmacmoB858
CmaCh07G006680Wild cucumber (PI 183967)cmacpiB866
CmaCh07G006680Wild cucumber (PI 183967)cmacpiB869
CmaCh07G006680Wild cucumber (PI 183967)cmacpiB884
CmaCh07G006680Cucumber (Chinese Long) v2cmacuB849
CmaCh07G006680Cucumber (Chinese Long) v2cmacuB852
CmaCh07G006680Cucumber (Chinese Long) v2cmacuB869
CmaCh07G006680Cucumber (Chinese Long) v2cmacuB877
CmaCh07G006680Melon (DHL92) v3.5.1cmameB786
CmaCh07G006680Melon (DHL92) v3.5.1cmameB795
CmaCh07G006680Watermelon (Charleston Gray)cmawcgB776
CmaCh07G006680Watermelon (Charleston Gray)cmawcgB773
CmaCh07G006680Watermelon (97103) v1cmawmB816
CmaCh07G006680Watermelon (97103) v1cmawmB823
CmaCh07G006680Cucurbita pepo (Zucchini)cmacpeB866
CmaCh07G006680Cucurbita pepo (Zucchini)cmacpeB880
CmaCh07G006680Cucurbita pepo (Zucchini)cmacpeB888
CmaCh07G006680Bottle gourd (USVL1VR-Ls)cmalsiB803
CmaCh07G006680Bottle gourd (USVL1VR-Ls)cmalsiB809
CmaCh07G006680Cucumber (Gy14) v2cgybcmaB263
CmaCh07G006680Cucumber (Gy14) v2cgybcmaB569
CmaCh07G006680Cucumber (Gy14) v2cgybcmaB861
CmaCh07G006680Melon (DHL92) v3.6.1cmamedB888
CmaCh07G006680Melon (DHL92) v3.6.1cmamedB896