Carg00811 (gene) Silver-seed gourd

Overview
NameCarg00811
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionTransmembrane protein
LocationCucurbita_argyrosperma_scaffold_014 : 1584551 .. 1585241 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGATCCTCACGTATGGGCCTTACTGGGCTGGATCAATTGATCTTCATAAGAGATTTGGCCCATAGTGATTAACCGGTTTGGCCCATTTGAAGGAAAGAACCGATTTGGCCCATTTTAAGGAGAGAATATTGGAATCCTTAAAAAAGCCCAACAATTTCCTTCAATTTTATTTATTATTTATTATATTTTCTTTTATAGAAAGGGCTGGACAGCTTTGGTCCGTGCAGAGCAAGAAAGGCTCGGAGTCGCACCAATACAAATAGAGGGACGGAGAGAAAGGAAGAGAGACCCAGAGAGATCGAGAAGAACGCGGAGAGAAAGGGAAAGGGATCGGCTGGCCATCGGAGACTGACAGGCGAGTTCAACCGATAAACCCTCACAGGATAAATTTAGCGCGCCGACAAGGGAAGAGCATACAAGTCGTTGTGGTGGGCTGATTAATTCAGTGCCCTAAAACTATCCTCTTTCCACTTGCTGATAATCTTAGGCTCCGGCGAAAAAGAAGGACGCCGATGGGCATTATCAGAAGTGGCTTCTCCCTTATAGCGGGAACTGTGTTAGGGATTTACATCGCTCAAAATTACAACGTTCCCAACATTAGGAAGCTCGCCAATACTGGGCTTGTGATGGCCAAGCACATCGAAGAGAATTACAGGAAGCCAAAGAAGAGGGAGGATGATGATTGA

mRNA sequence

ATGGTTGATCCTCACAAAGGGCTGGACAGCTTTGGTCCGTGCAGAGCAAGAAAGGCTCGGAGTCGCACCAATACAAATAGAGGGACGGAGAGAAAGGAAGAGAGACCCAGAGAGATCGAGAAGAACGCGGAGAGAAAGGGAAAGGGATCGGCTGGCCATCGGAGACTGACAGGCGAGCTCCGGCGAAAAAGAAGGACGCCGATGGGCATTATCAGAAGTGGCTTCTCCCTTATAGCGGGAACTGTGTTAGGGATTTACATCGCTCAAAATTACAACGTTCCCAACATTAGGAAGCTCGCCAATACTGGGCTTGTGATGGCCAAGCACATCGAAGAGAATTACAGGAAGCCAAAGAAGAGGGAGGATGATGATTGA

Coding sequence (CDS)

ATGGTTGATCCTCACAAAGGGCTGGACAGCTTTGGTCCGTGCAGAGCAAGAAAGGCTCGGAGTCGCACCAATACAAATAGAGGGACGGAGAGAAAGGAAGAGAGACCCAGAGAGATCGAGAAGAACGCGGAGAGAAAGGGAAAGGGATCGGCTGGCCATCGGAGACTGACAGGCGAGCTCCGGCGAAAAAGAAGGACGCCGATGGGCATTATCAGAAGTGGCTTCTCCCTTATAGCGGGAACTGTGTTAGGGATTTACATCGCTCAAAATTACAACGTTCCCAACATTAGGAAGCTCGCCAATACTGGGCTTGTGATGGCCAAGCACATCGAAGAGAATTACAGGAAGCCAAAGAAGAGGGAGGATGATGATTGA

Protein sequence

MVDPHKGLDSFGPCRARKARSRTNTNRGTERKEERPREIEKNAERKGKGSAGHRRLTGELRRKRRTPMGIIRSGFSLIAGTVLGIYIAQNYNVPNIRKLANTGLVMAKHIEENYRKPKKREDDD
Homology
[Close]
BLAST of Carg00811 vs. NCBI nr
Match: XP_022949611.1 (uncharacterized protein LOC111452953 [Cucurbita moschata] >XP_022949613.1 uncharacterized protein LOC111452953 [Cucurbita moschata] >XP_022978971.1 uncharacterized protein LOC111478763 [Cucurbita maxima] >XP_022978972.1 uncharacterized protein LOC111478763 [Cucurbita maxima] >XP_023543115.1 uncharacterized protein LOC111803077 [Cucurbita pepo subsp. pepo] >XP_023543116.1 uncharacterized protein LOC111803077 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 115.5 bits (288), Expect = 1.3e-22
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0 

Query: 68  MGIIRSGFSLIAGTVLGIYIAQNYNVPNIRKLANTGLVMAKHIEENYRKPKKREDDD 125
           MGIIRSGFSLIAGTVLGIYIAQNYNVPNIRKLANTGLVMAKHIEENYRKPKKREDDD
Sbjct: 1   MGIIRSGFSLIAGTVLGIYIAQNYNVPNIRKLANTGLVMAKHIEENYRKPKKREDDD 57

[Close]
BLAST of Carg00811 vs. NCBI nr
Match: XP_022132505.1 (uncharacterized protein LOC111005345 [Momordica charantia])

HSP 1 Score: 107.1 bits (266), Expect = 4.5e-20
Identity = 51/57 (89.47%), Postives = 54/57 (94.74%), Query Frame = 0 

Query: 68  MGIIRSGFSLIAGTVLGIYIAQNYNVPNIRKLANTGLVMAKHIEENYRKPKKREDDD 125
           MG IRS FS IAGTVLGIY+AQNYNVPNIRKLANTGLV+AKHIEENYRKPKKR+DDD
Sbjct: 1   MGFIRSSFSFIAGTVLGIYVAQNYNVPNIRKLANTGLVVAKHIEENYRKPKKRDDDD 57

[Close]
BLAST of Carg00811 vs. NCBI nr
Match: XP_008440344.1 (PREDICTED: uncharacterized protein LOC103484824 [Cucumis melo])

HSP 1 Score: 104.0 bits (258), Expect = 3.8e-19
Identity = 49/57 (85.96%), Postives = 52/57 (91.23%), Query Frame = 0 

Query: 68  MGIIRSGFSLIAGTVLGIYIAQNYNVPNIRKLANTGLVMAKHIEENYRKPKKREDDD 125
           MG IRS FS IAG+V GIY+AQNYNVPNIRKLANTGL MAKHIEENYRKPKKR+DDD
Sbjct: 1   MGFIRSSFSFIAGSVFGIYVAQNYNVPNIRKLANTGLAMAKHIEENYRKPKKRDDDD 57

[Close]
BLAST of Carg00811 vs. NCBI nr
Match: XP_021603400.1 (uncharacterized protein LOC110608471 [Manihot esculenta] >OAY56705.1 hypothetical protein MANES_02G038600 [Manihot esculenta])

HSP 1 Score: 104.0 bits (258), Expect = 3.8e-19
Identity = 48/57 (84.21%), Postives = 54/57 (94.74%), Query Frame = 0 

Query: 68  MGIIRSGFSLIAGTVLGIYIAQNYNVPNIRKLANTGLVMAKHIEENYRKPKKREDDD 125
           MGIIRSGFS IAGTV GIY+AQNYNVPNIRKL NTGL++AKH+EENYRKPKKR+DD+
Sbjct: 1   MGIIRSGFSFIAGTVFGIYVAQNYNVPNIRKLTNTGLLIAKHMEENYRKPKKRDDDE 57

[Close]
BLAST of Carg00811 vs. NCBI nr
Match: XP_022963418.1 (uncharacterized protein LOC111463630 [Cucurbita moschata] >XP_022963419.1 uncharacterized protein LOC111463630 [Cucurbita moschata] >XP_023003118.1 uncharacterized protein LOC111496825 [Cucurbita maxima] >XP_023003120.1 uncharacterized protein LOC111496825 [Cucurbita maxima])

HSP 1 Score: 102.8 bits (255), Expect = 8.4e-19
Identity = 48/57 (84.21%), Postives = 52/57 (91.23%), Query Frame = 0 

Query: 68  MGIIRSGFSLIAGTVLGIYIAQNYNVPNIRKLANTGLVMAKHIEENYRKPKKREDDD 125
           MG IRS FS I GTV GIY+AQNY+VPNIRKLANTG++MAKHIEENYRKPKKREDDD
Sbjct: 1   MGFIRSSFSFIVGTVFGIYVAQNYSVPNIRKLANTGILMAKHIEENYRKPKKREDDD 57

[Close]
BLAST of Carg00811 vs. TAIR10
Match: AT2G35736.1 (unknown protein)

HSP 1 Score: 90.5 bits (223), Expect = 7.8e-19
Identity = 41/52 (78.85%), Postives = 46/52 (88.46%), Query Frame = 0 

Query: 68  MGIIRSGFSLIAGTVLGIYIAQNYNVPNIRKLANTGLVMAKHIEENYRKPKK 120
           MGI RS FS I G+V G+Y+AQNYNVPNIRKL NTGLV+AKH+EENYRKPKK
Sbjct: 1   MGIFRSCFSFITGSVFGVYLAQNYNVPNIRKLTNTGLVVAKHVEENYRKPKK 52

[Close]
BLAST of Carg00811 vs. TAIR10
Match: AT4G25225.1 (unknown protein)

HSP 1 Score: 80.1 bits (196), Expect = 1.1e-15
Identity = 38/55 (69.09%), Postives = 43/55 (78.18%), Query Frame = 0 

Query: 68  MGIIRSGFSLIAGTVLGIYIAQNYNVPNIRKLANTGLVMAKHIEENYRKPKKRED 123
           MGIIRS FS I GTV GIYIAQ YNVPNI+KL +  + MAK +EE YRKPK R+D
Sbjct: 1   MGIIRSSFSFIMGTVCGIYIAQTYNVPNIKKLGHCAVSMAKQVEEKYRKPKSRDD 55

[Close]
BLAST of Carg00811 vs. TrEMBL
Match: tr|A0A1S3B1N0|A0A1S3B1N0_CUCME (uncharacterized protein LOC103484824 OS=Cucumis melo OX=3656 GN=LOC103484824 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.5e-19
Identity = 49/57 (85.96%), Postives = 52/57 (91.23%), Query Frame = 0 

Query: 68  MGIIRSGFSLIAGTVLGIYIAQNYNVPNIRKLANTGLVMAKHIEENYRKPKKREDDD 125
           MG IRS FS IAG+V GIY+AQNYNVPNIRKLANTGL MAKHIEENYRKPKKR+DDD
Sbjct: 1   MGFIRSSFSFIAGSVFGIYVAQNYNVPNIRKLANTGLAMAKHIEENYRKPKKRDDDD 57

[Close]
BLAST of Carg00811 vs. TrEMBL
Match: tr|A0A2C9WCZ4|A0A2C9WCZ4_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_02G038600 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.5e-19
Identity = 48/57 (84.21%), Postives = 54/57 (94.74%), Query Frame = 0 

Query: 68  MGIIRSGFSLIAGTVLGIYIAQNYNVPNIRKLANTGLVMAKHIEENYRKPKKREDDD 125
           MGIIRSGFS IAGTV GIY+AQNYNVPNIRKL NTGL++AKH+EENYRKPKKR+DD+
Sbjct: 1   MGIIRSGFSFIAGTVFGIYVAQNYNVPNIRKLTNTGLLIAKHMEENYRKPKKRDDDE 57

[Close]
BLAST of Carg00811 vs. TrEMBL
Match: tr|B9SSH0|B9SSH0_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1061850 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.8e-18
Identity = 47/57 (82.46%), Postives = 51/57 (89.47%), Query Frame = 0 

Query: 68  MGIIRSGFSLIAGTVLGIYIAQNYNVPNIRKLANTGLVMAKHIEENYRKPKKREDDD 125
           MGI RSGFS I GTV GIY+AQNYNVPNIRKL NTGLV+AKHIEE YRKPKKR++DD
Sbjct: 1   MGIFRSGFSFIVGTVCGIYVAQNYNVPNIRKLTNTGLVIAKHIEETYRKPKKRDEDD 57

[Close]
BLAST of Carg00811 vs. TrEMBL
Match: tr|F6I385|F6I385_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_15s0048g00610 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.8e-18
Identity = 47/57 (82.46%), Postives = 50/57 (87.72%), Query Frame = 0 

Query: 68  MGIIRSGFSLIAGTVLGIYIAQNYNVPNIRKLANTGLVMAKHIEENYRKPKKREDDD 125
           MGIIRS F  + GTV G+YIAQNYNVPN+RKLANTGLVMAKHIEENYRKPKK  DDD
Sbjct: 1   MGIIRSSFMFMVGTVCGVYIAQNYNVPNVRKLANTGLVMAKHIEENYRKPKKNRDDD 57

[Close]
BLAST of Carg00811 vs. TrEMBL
Match: tr|A0A200QVB8|A0A200QVB8_9MAGN (Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_1369g6 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 6.1e-18
Identity = 45/57 (78.95%), Postives = 51/57 (89.47%), Query Frame = 0 

Query: 68  MGIIRSGFSLIAGTVLGIYIAQNYNVPNIRKLANTGLVMAKHIEENYRKPKKREDDD 125
           MGI+RSGF    GT  G+YIAQNYNVPNI+KLANTGL+MAKHIEENYRKPKKR+DD+
Sbjct: 1   MGILRSGFQFFLGTACGVYIAQNYNVPNIKKLANTGLLMAKHIEENYRKPKKRDDDE 57

The following BLAST results are available for this feature:
BLAST of Carg00811 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022949611.11.3e-22100.00uncharacterized protein LOC111452953 [Cucurbita moschata] >XP_022949613.1 unchar... [more]
XP_022132505.14.5e-2089.47uncharacterized protein LOC111005345 [Momordica charantia][more]
XP_008440344.13.8e-1985.96PREDICTED: uncharacterized protein LOC103484824 [Cucumis melo][more]
XP_021603400.13.8e-1984.21uncharacterized protein LOC110608471 [Manihot esculenta] >OAY56705.1 hypothetica... [more]
XP_022963418.18.4e-1984.21uncharacterized protein LOC111463630 [Cucurbita moschata] >XP_022963419.1 unchar... [more]
BLAST of Carg00811 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G35736.17.8e-1978.85unknown protein[more]
AT4G25225.11.1e-1569.09unknown protein[more]
BLAST of Carg00811 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Carg00811 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3B1N0|A0A1S3B1N0_CUCME2.5e-1985.96uncharacterized protein LOC103484824 OS=Cucumis melo OX=3656 GN=LOC103484824 PE=... [more]
tr|A0A2C9WCZ4|A0A2C9WCZ4_MANES2.5e-1984.21Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_02G038600 PE=4 SV=... [more]
tr|B9SSH0|B9SSH0_RICCO2.8e-1882.46Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1061850 PE=4 SV=1[more]
tr|F6I385|F6I385_VITVI2.8e-1882.46Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_15s0048g00610 PE=4 SV=... [more]
tr|A0A200QVB8|A0A200QVB8_9MAGN6.1e-1878.95Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_1369g6 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR027854STMP1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg00811-RACarg00811-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027854Short transmembrane mitochondrial protein 1PFAMPF15054DUF4535coord: 73..117
e-value: 8.3E-23
score: 79.8
IPR027854Short transmembrane mitochondrial protein 1PANTHERPTHR33528FAMILY NOT NAMEDcoord: 68..124
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 23..65
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..16
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..65
NoneNo IPR availablePANTHERPTHR33528:SF1SUBFAMILY NOT NAMEDcoord: 68..124

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg00811Cla014001Watermelon (97103) v1carwmB0407
Carg00811MELO3C007606Melon (DHL92) v3.5.1carmeB0414
Carg00811ClCG01G017280Watermelon (Charleston Gray)carwcgB0397
Carg00811CSPI06G28630Wild cucumber (PI 183967)carcpiB0446
Carg00811Cucsa.102910Cucumber (Gy14) v1carcgyB0467
Carg00811CmaCh07G006680Cucurbita maxima (Rimu)carcmaB0571
Carg00811CmaCh03G009430Cucurbita maxima (Rimu)carcmaB0567
Carg00811CmoCh07G006790Cucurbita moschata (Rifu)carcmoB0554
Carg00811Lsi01G009250Bottle gourd (USVL1VR-Ls)carlsiB364
Carg00811MELO3C007606.2Melon (DHL92) v3.6.1carmedB0418
Carg00811Cla97C01G016460Watermelon (97103) v2carwmbB0426
Carg00811Bhi03G000756Wax gourdcarwgoB0491
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg00811Carg18568Silver-seed gourdcarcarB001
The following block(s) are covering this gene:
GeneOrganismBlock
Carg00811Wax gourdcarwgoB0487
Carg00811Wax gourdcarwgoB0494
Carg00811Silver-seed gourdcarcarB218
Carg00811Silver-seed gourdcarcarB344
Carg00811Silver-seed gourdcarcarB401
Carg00811Silver-seed gourdcarcarB427
Carg00811Cucumber (Gy14) v2carcgybB0409
Carg00811Cucumber (Gy14) v2carcgybB0417
Carg00811Cucumber (Gy14) v2carcgybB0418
Carg00811Cucumber (Gy14) v1carcgyB0474
Carg00811Cucumber (Gy14) v1carcgyB0475
Carg00811Cucurbita maxima (Rimu)carcmaB0555
Carg00811Cucurbita maxima (Rimu)carcmaB0557
Carg00811Cucurbita maxima (Rimu)carcmaB0563
Carg00811Cucurbita maxima (Rimu)carcmaB0566
Carg00811Cucurbita maxima (Rimu)carcmaB0570
Carg00811Cucurbita moschata (Rifu)carcmoB0542
Carg00811Cucurbita moschata (Rifu)carcmoB0545
Carg00811Cucurbita moschata (Rifu)carcmoB0548
Carg00811Cucurbita moschata (Rifu)carcmoB0550
Carg00811Cucurbita moschata (Rifu)carcmoB0551
Carg00811Cucurbita moschata (Rifu)carcmoB0553
Carg00811Cucurbita pepo (Zucchini)carcpeB0554
Carg00811Cucurbita pepo (Zucchini)carcpeB0556
Carg00811Cucurbita pepo (Zucchini)carcpeB0563
Carg00811Cucurbita pepo (Zucchini)carcpeB0567
Carg00811Cucurbita pepo (Zucchini)carcpeB0568
Carg00811Cucurbita pepo (Zucchini)carcpeB0570
Carg00811Cucurbita pepo (Zucchini)carcpeB0573
Carg00811Wild cucumber (PI 183967)carcpiB0436
Carg00811Wild cucumber (PI 183967)carcpiB0445
Carg00811Cucumber (Chinese Long) v2carcuB0431
Carg00811Cucumber (Chinese Long) v2carcuB0440
Carg00811Cucumber (Chinese Long) v2carcuB0441
Carg00811Cucumber (Chinese Long) v3carcucB0433
Carg00811Cucumber (Chinese Long) v3carcucB0441
Carg00811Cucumber (Chinese Long) v3carcucB0442
Carg00811Bottle gourd (USVL1VR-Ls)carlsiB365
Carg00811Bottle gourd (USVL1VR-Ls)carlsiB372
Carg00811Melon (DHL92) v3.5.1carmeB0406
Carg00811Melon (DHL92) v3.5.1carmeB0411
Carg00811Melon (DHL92) v3.6.1carmedB0410
Carg00811Melon (DHL92) v3.6.1carmedB0415
Carg00811Watermelon (Charleston Gray)carwcgB0403
Carg00811Watermelon (Charleston Gray)carwcgB0399
Carg00811Watermelon (97103) v1carwmB0400
Carg00811Watermelon (97103) v1carwmB0404
Carg00811Watermelon (97103) v2carwmbB0429
Carg00811Watermelon (97103) v2carwmbB0433