CmoCh07G001400 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh07G001400
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description60S ribosomal protein L32-1
LocationCmo_Chr07 : 769259 .. 770256 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGTGCCGTTGCTGACGAAGAAGATCGTTAAGAAGAGGGTTAAGCAGTTCAAGAGGCCTCAGAGCGACCGCAAGATCTCTGTCAAAGTATGTGCATGAACTTTGACTAGTTTTACTCTGTACATTTAGTATTTCTACTTGCCAGTGATTTTGTATTCAAGTATGTTCATATTTTGCATACGAGAGTTGAGCTTCGCTCGGCTTATTTGCGGGGTCGATAACGCTTAGTTTAGAATGAATCTGTATTATTTATCTCGATACTTAATAAGTTGCAAGTGGTTCTGTAGGTTATTTTCTGCTAGTCATTCATCTGTAGGTTATTCGCTGTTAATCATTCATCTGTAGGTTATTTGGTATCTATCTCTTCCTTTCAACTCGTGGTTCTTACTACATTCATTTCTAACGTTTTTTTGTTATTGTAAAAAGGTTGAAATCTCATATACGGCTTGATTACTCTCTCTTGCAAATGTTTTACAAATCTGTGCAATATGTGTTGGGTATTGTATAAAAACTGGCCTCCTGTAAATTTACCGAGTGATTCCTCAAATGTACGGTTGACAGACAAACTGGCGTAGACCGAAGGGTATTGATTCTCGTGTCCGAAGAAAGTTCAAAGGATGCACTTTGATGCCAAACATCGGTTATGGTACTGACAAGAAGACCCGCCACTATCTTCCTAATGGATTCAAGAAGTTCGTCGTGCACAATGTGAATGAGCTTGAACTGTTGATGATGCACAACAGGCAAACCACTAATCTCTTTCACATTTCATTTTAATATGTCATTACTCCTTTAACTTCATGATTAACTACATTTGGAAAGGTAATCTTACATGGCTGAGTTTTACTTAATTCTGTAATTTTAGGACTTACTGTGCTGAGATTGCACACGATGTGTCCACAAAAAAGAGGAAGGAGATCGTGGAGAGAGCTGCCCAACTCGATGTAGTTGTCACCAACAAGCTTGCTAGGTTGCGCAGCCAGGAGGATGAATGA

mRNA sequence

ATGGCGGTGCCGTTGCTGACGAAGAAGATCGTTAAGAAGAGGGTTAAGCAGTTCAAGAGGCCTCAGAGCGACCGCAAGATCTCTGTCAAAACAAACTGGCGTAGACCGAAGGGTATTGATTCTCGTGTCCGAAGAAAGTTCAAAGGATGCACTTTGATGCCAAACATCGGTTATGGTACTGACAAGAAGACCCGCCACTATCTTCCTAATGGATTCAAGAAGTTCGTCGTGCACAATGTGAATGAGCTTGAACTGTTGATGATGCACAACAGGACTTACTGTGCTGAGATTGCACACGATGTGTCCACAAAAAAGAGGAAGGAGATCGTGGAGAGAGCTGCCCAACTCGATGTAGTTGTCACCAACAAGCTTGCTAGGTTGCGCAGCCAGGAGGATGAATGA

Coding sequence (CDS)

ATGGCGGTGCCGTTGCTGACGAAGAAGATCGTTAAGAAGAGGGTTAAGCAGTTCAAGAGGCCTCAGAGCGACCGCAAGATCTCTGTCAAAACAAACTGGCGTAGACCGAAGGGTATTGATTCTCGTGTCCGAAGAAAGTTCAAAGGATGCACTTTGATGCCAAACATCGGTTATGGTACTGACAAGAAGACCCGCCACTATCTTCCTAATGGATTCAAGAAGTTCGTCGTGCACAATGTGAATGAGCTTGAACTGTTGATGATGCACAACAGGACTTACTGTGCTGAGATTGCACACGATGTGTCCACAAAAAAGAGGAAGGAGATCGTGGAGAGAGCTGCCCAACTCGATGTAGTTGTCACCAACAAGCTTGCTAGGTTGCGCAGCCAGGAGGATGAATGA
Homology
[Close]
BLAST of CmoCh07G001400 vs. Swiss-Prot
Match: RL321_ARATH (60S ribosomal protein L32-1 OS=Arabidopsis thaliana GN=RPL32A PE=2 SV=2)

HSP 1 Score: 231.9 bits (590), Expect = 4.1e-60
Identity = 115/133 (86.47%), Postives = 126/133 (94.74%), Query Frame = 1 

Query: 1   MAVPLLTKKIVKKRVKQFKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60
           MAVPLLTKK+VKKR  +F RPQSDR+I+VK +WRRPKGIDSRVRRKFKG TLMPN+GYG+
Sbjct: 1   MAVPLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYGS 60

Query: 61  DKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHDVSTKKRKEIVERAAQLDVVV 120
           DKKTRHYLPNGFKKFVVHN +ELELLMMHNRTYCAEIAH+VSTKKRK IVERA+QLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFVVHNTSELELLMMHNRTYCAEIAHNVSTKKRKAIVERASQLDVVV 120

Query: 121 TNKLARLRSQEDE 134
           TN+LARLRSQEDE
Sbjct: 121 TNRLARLRSQEDE 133

[Close]
BLAST of CmoCh07G001400 vs. Swiss-Prot
Match: RL322_ARATH (60S ribosomal protein L32-2 OS=Arabidopsis thaliana GN=RPL32B PE=2 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 2.7e-59
Identity = 112/133 (84.21%), Postives = 125/133 (93.98%), Query Frame = 1 

Query: 1   MAVPLLTKKIVKKRVKQFKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60
           MAVPLLTKK+VKKR  +F RPQSDR+I+VK +WRRPKGIDSRVRRKFKG TLMPN+GYG+
Sbjct: 1   MAVPLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYGS 60

Query: 61  DKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHDVSTKKRKEIVERAAQLDVVV 120
           DKKTRHYLPNGFKKF+VHN +ELELLMMHNRTYCAEIAH++STKKRK IVERA+QLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFIVHNTSELELLMMHNRTYCAEIAHNISTKKRKAIVERASQLDVVV 120

Query: 121 TNKLARLRSQEDE 134
           +NKL RLRSQEDE
Sbjct: 121 SNKLGRLRSQEDE 133

[Close]
BLAST of CmoCh07G001400 vs. Swiss-Prot
Match: RL32_CANLF (60S ribosomal protein L32 OS=Canis lupus familiaris GN=RPL32 PE=1 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 3.2e-44
Identity = 88/130 (67.69%), Postives = 111/130 (85.38%), Query Frame = 1 

Query: 4   PLLTKKIVKKRVKQFKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGTDKK 63
           PL+  KIVKKR K+F R QSDR + +K NWR+P+GID+RVRR+FKG  LMPNIGYG++KK
Sbjct: 6   PLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKK 65

Query: 64  TRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHDVSTKKRKEIVERAAQLDVVVTNK 123
           T+H LP+GF+KF+VHNV ELE+L+M N++YCAEIAH+VS+K RK IVERAAQL + VTN 
Sbjct: 66  TKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNP 125

Query: 124 LARLRSQEDE 134
            ARLRS+E+E
Sbjct: 126 NARLRSEENE 135

[Close]
BLAST of CmoCh07G001400 vs. Swiss-Prot
Match: RL32_RAT (60S ribosomal protein L32 OS=Rattus norvegicus GN=Rpl32 PE=1 SV=2)

HSP 1 Score: 179.1 bits (453), Expect = 3.2e-44
Identity = 88/130 (67.69%), Postives = 111/130 (85.38%), Query Frame = 1 

Query: 4   PLLTKKIVKKRVKQFKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGTDKK 63
           PL+  KIVKKR K+F R QSDR + +K NWR+P+GID+RVRR+FKG  LMPNIGYG++KK
Sbjct: 6   PLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKK 65

Query: 64  TRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHDVSTKKRKEIVERAAQLDVVVTNK 123
           T+H LP+GF+KF+VHNV ELE+L+M N++YCAEIAH+VS+K RK IVERAAQL + VTN 
Sbjct: 66  TKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNP 125

Query: 124 LARLRSQEDE 134
            ARLRS+E+E
Sbjct: 126 NARLRSEENE 135

[Close]
BLAST of CmoCh07G001400 vs. Swiss-Prot
Match: RL32_PIG (60S ribosomal protein L32 OS=Sus scrofa GN=RPL32 PE=1 SV=3)

HSP 1 Score: 179.1 bits (453), Expect = 3.2e-44
Identity = 88/130 (67.69%), Postives = 111/130 (85.38%), Query Frame = 1 

Query: 4   PLLTKKIVKKRVKQFKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGTDKK 63
           PL+  KIVKKR K+F R QSDR + +K NWR+P+GID+RVRR+FKG  LMPNIGYG++KK
Sbjct: 6   PLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKK 65

Query: 64  TRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHDVSTKKRKEIVERAAQLDVVVTNK 123
           T+H LP+GF+KF+VHNV ELE+L+M N++YCAEIAH+VS+K RK IVERAAQL + VTN 
Sbjct: 66  TKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNP 125

Query: 124 LARLRSQEDE 134
            ARLRS+E+E
Sbjct: 126 NARLRSEENE 135

[Close]
BLAST of CmoCh07G001400 vs. TrEMBL
Match: A0A0A0KLV4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G521090 PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 1.2e-66
Identity = 131/133 (98.50%), Postives = 132/133 (99.25%), Query Frame = 1 

Query: 1   MAVPLLTKKIVKKRVKQFKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60
           MAVPLLTKKIVKKRVKQFKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGT
Sbjct: 1   MAVPLLTKKIVKKRVKQFKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60

Query: 61  DKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHDVSTKKRKEIVERAAQLDVVV 120
           DKKTRHYLPNGFKKFVVHNV ELELLMMHNRTYCAEIAHDVST+KRKEIVERAAQLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFVVHNVTELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVV 120

Query: 121 TNKLARLRSQEDE 134
           TNKLARLRSQEDE
Sbjct: 121 TNKLARLRSQEDE 133

[Close]
BLAST of CmoCh07G001400 vs. TrEMBL
Match: B9T5H6_RICCO (60S ribosomal protein L32, putative OS=Ricinus communis GN=RCOM_0379000 PE=4 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 1.0e-65
Identity = 129/133 (96.99%), Postives = 132/133 (99.25%), Query Frame = 1 

Query: 1   MAVPLLTKKIVKKRVKQFKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60
           MAVPLL+KKIVKKRVKQFKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYG+
Sbjct: 1   MAVPLLSKKIVKKRVKQFKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGS 60

Query: 61  DKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHDVSTKKRKEIVERAAQLDVVV 120
           DKKTRHYLPNGFKKFVVHNV ELELLMMHNRTYCAEIAHDVST+KRKEIVERAAQLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFVVHNVQELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVV 120

Query: 121 TNKLARLRSQEDE 134
           TNKLARLRSQEDE
Sbjct: 121 TNKLARLRSQEDE 133

[Close]
BLAST of CmoCh07G001400 vs. TrEMBL
Match: A0A0D2UMX8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G158000 PE=4 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 1.3e-65
Identity = 129/133 (96.99%), Postives = 132/133 (99.25%), Query Frame = 1 

Query: 1   MAVPLLTKKIVKKRVKQFKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60
           MAVPLL+KKIVKKRVK+FKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYG+
Sbjct: 1   MAVPLLSKKIVKKRVKKFKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGS 60

Query: 61  DKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHDVSTKKRKEIVERAAQLDVVV 120
           DKKTRHYLPNGFKKFVVHNV ELELLMMHNRTYCAEIAHDVSTKKRKEIVERAAQLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFVVHNVGELELLMMHNRTYCAEIAHDVSTKKRKEIVERAAQLDVVV 120

Query: 121 TNKLARLRSQEDE 134
           TNKLARLRSQEDE
Sbjct: 121 TNKLARLRSQEDE 133

[Close]
BLAST of CmoCh07G001400 vs. TrEMBL
Match: A0A0B0PYZ4_GOSAR (60S ribosomal L32-1-like protein OS=Gossypium arboreum GN=F383_05631 PE=4 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 1.3e-65
Identity = 129/133 (96.99%), Postives = 132/133 (99.25%), Query Frame = 1 

Query: 1   MAVPLLTKKIVKKRVKQFKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60
           MAVPLL+KKIVKKRVK+FKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYG+
Sbjct: 1   MAVPLLSKKIVKKRVKKFKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGS 60

Query: 61  DKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHDVSTKKRKEIVERAAQLDVVV 120
           DKKTRHYLPNGFKKFVVHNV ELELLMMHNRTYCAEIAHDVSTKKRKEIVERAAQLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFVVHNVQELELLMMHNRTYCAEIAHDVSTKKRKEIVERAAQLDVVV 120

Query: 121 TNKLARLRSQEDE 134
           TNKLARLRSQEDE
Sbjct: 121 TNKLARLRSQEDE 133

[Close]
BLAST of CmoCh07G001400 vs. TrEMBL
Match: A0A0B0P8C4_GOSAR (60S ribosomal protein L32-1 OS=Gossypium arboreum GN=F383_26871 PE=4 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 1.3e-65
Identity = 129/133 (96.99%), Postives = 132/133 (99.25%), Query Frame = 1 

Query: 1   MAVPLLTKKIVKKRVKQFKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60
           MAVPLL+KKIVKKRVK+FKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYG+
Sbjct: 120 MAVPLLSKKIVKKRVKKFKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGS 179

Query: 61  DKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHDVSTKKRKEIVERAAQLDVVV 120
           DKKTRHYLPNGFKKFVVHNV ELELLMMHNRTYCAEIAHDVSTKKRKEIVERAAQLDVVV
Sbjct: 180 DKKTRHYLPNGFKKFVVHNVQELELLMMHNRTYCAEIAHDVSTKKRKEIVERAAQLDVVV 239

Query: 121 TNKLARLRSQEDE 134
           TNKLARLRSQEDE
Sbjct: 240 TNKLARLRSQEDE 252

[Close]
BLAST of CmoCh07G001400 vs. TAIR10
Match: AT4G18100.1 (AT4G18100.1 Ribosomal protein L32e)

HSP 1 Score: 231.9 bits (590), Expect = 2.3e-61
Identity = 115/133 (86.47%), Postives = 126/133 (94.74%), Query Frame = 1 

Query: 1   MAVPLLTKKIVKKRVKQFKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60
           MAVPLLTKK+VKKR  +F RPQSDR+I+VK +WRRPKGIDSRVRRKFKG TLMPN+GYG+
Sbjct: 1   MAVPLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYGS 60

Query: 61  DKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHDVSTKKRKEIVERAAQLDVVV 120
           DKKTRHYLPNGFKKFVVHN +ELELLMMHNRTYCAEIAH+VSTKKRK IVERA+QLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFVVHNTSELELLMMHNRTYCAEIAHNVSTKKRKAIVERASQLDVVV 120

Query: 121 TNKLARLRSQEDE 134
           TN+LARLRSQEDE
Sbjct: 121 TNRLARLRSQEDE 133

[Close]
BLAST of CmoCh07G001400 vs. TAIR10
Match: AT5G46430.1 (AT5G46430.1 Ribosomal protein L32e)

HSP 1 Score: 229.2 bits (583), Expect = 1.5e-60
Identity = 112/133 (84.21%), Postives = 125/133 (93.98%), Query Frame = 1 

Query: 1   MAVPLLTKKIVKKRVKQFKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60
           MAVPLLTKK+VKKR  +F RPQSDR+I+VK +WRRPKGIDSRVRRKFKG TLMPN+GYG+
Sbjct: 1   MAVPLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYGS 60

Query: 61  DKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHDVSTKKRKEIVERAAQLDVVV 120
           DKKTRHYLPNGFKKF+VHN +ELELLMMHNRTYCAEIAH++STKKRK IVERA+QLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFIVHNTSELELLMMHNRTYCAEIAHNISTKKRKAIVERASQLDVVV 120

Query: 121 TNKLARLRSQEDE 134
           +NKL RLRSQEDE
Sbjct: 121 SNKLGRLRSQEDE 133

[Close]
BLAST of CmoCh07G001400 vs. NCBI nr
Match: gi|449433704|ref|XP_004134637.1| (PREDICTED: 60S ribosomal protein L32-1-like [Cucumis sativus])

HSP 1 Score: 260.4 bits (664), Expect = 1.7e-66
Identity = 131/133 (98.50%), Postives = 132/133 (99.25%), Query Frame = 1 

Query: 1   MAVPLLTKKIVKKRVKQFKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60
           MAVPLLTKKIVKKRVKQFKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGT
Sbjct: 1   MAVPLLTKKIVKKRVKQFKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60

Query: 61  DKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHDVSTKKRKEIVERAAQLDVVV 120
           DKKTRHYLPNGFKKFVVHNV ELELLMMHNRTYCAEIAHDVST+KRKEIVERAAQLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFVVHNVTELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVV 120

Query: 121 TNKLARLRSQEDE 134
           TNKLARLRSQEDE
Sbjct: 121 TNKLARLRSQEDE 133

[Close]
BLAST of CmoCh07G001400 vs. NCBI nr
Match: gi|659078356|ref|XP_008439684.1| (PREDICTED: 60S ribosomal protein L32-1-like [Cucumis melo])

HSP 1 Score: 258.5 bits (659), Expect = 6.6e-66
Identity = 130/133 (97.74%), Postives = 132/133 (99.25%), Query Frame = 1 

Query: 1   MAVPLLTKKIVKKRVKQFKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60
           MAVPLLTKKIVKKRVKQFKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGT
Sbjct: 1   MAVPLLTKKIVKKRVKQFKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60

Query: 61  DKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHDVSTKKRKEIVERAAQLDVVV 120
           DKKTRHYLPNGFKKFVVHNV ELELLMMHNRTYCAEIAH+VST+KRKEIVERAAQLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFVVHNVKELELLMMHNRTYCAEIAHNVSTRKRKEIVERAAQLDVVV 120

Query: 121 TNKLARLRSQEDE 134
           TNKLARLRSQEDE
Sbjct: 121 TNKLARLRSQEDE 133

[Close]
BLAST of CmoCh07G001400 vs. NCBI nr
Match: gi|255585616|ref|XP_002533495.1| (PREDICTED: 60S ribosomal protein L32-1 [Ricinus communis])

HSP 1 Score: 257.3 bits (656), Expect = 1.5e-65
Identity = 129/133 (96.99%), Postives = 132/133 (99.25%), Query Frame = 1 

Query: 1   MAVPLLTKKIVKKRVKQFKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60
           MAVPLL+KKIVKKRVKQFKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYG+
Sbjct: 1   MAVPLLSKKIVKKRVKQFKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGS 60

Query: 61  DKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHDVSTKKRKEIVERAAQLDVVV 120
           DKKTRHYLPNGFKKFVVHNV ELELLMMHNRTYCAEIAHDVST+KRKEIVERAAQLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFVVHNVQELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVV 120

Query: 121 TNKLARLRSQEDE 134
           TNKLARLRSQEDE
Sbjct: 121 TNKLARLRSQEDE 133

[Close]
BLAST of CmoCh07G001400 vs. NCBI nr
Match: gi|728841735|gb|KHG21178.1| (60S ribosomal protein L32-1 [Gossypium arboreum])

HSP 1 Score: 256.9 bits (655), Expect = 1.9e-65
Identity = 129/133 (96.99%), Postives = 132/133 (99.25%), Query Frame = 1 

Query: 1   MAVPLLTKKIVKKRVKQFKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60
           MAVPLL+KKIVKKRVK+FKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYG+
Sbjct: 67  MAVPLLSKKIVKKRVKKFKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGS 126

Query: 61  DKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHDVSTKKRKEIVERAAQLDVVV 120
           DKKTRHYLPNGFKKFVVHNV ELELLMMHNRTYCAEIAHDVSTKKRKEIVERAAQLDVVV
Sbjct: 127 DKKTRHYLPNGFKKFVVHNVQELELLMMHNRTYCAEIAHDVSTKKRKEIVERAAQLDVVV 186

Query: 121 TNKLARLRSQEDE 134
           TNKLARLRSQEDE
Sbjct: 187 TNKLARLRSQEDE 199

[Close]
BLAST of CmoCh07G001400 vs. NCBI nr
Match: gi|659068321|ref|XP_008443854.1| (PREDICTED: 60S ribosomal protein L32-1 [Cucumis melo])

HSP 1 Score: 256.9 bits (655), Expect = 1.9e-65
Identity = 129/133 (96.99%), Postives = 131/133 (98.50%), Query Frame = 1 

Query: 1   MAVPLLTKKIVKKRVKQFKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60
           MAVPLL+KKIVKKR K+FKRPQSDRKISVK NWRRPKGIDSRVRRKFKGCTLMPNIGYGT
Sbjct: 1   MAVPLLSKKIVKKRTKKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60

Query: 61  DKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHDVSTKKRKEIVERAAQLDVVV 120
           DKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHDVSTKKRKEIVERAAQLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHDVSTKKRKEIVERAAQLDVVV 120

Query: 121 TNKLARLRSQEDE 134
           TNKLARLRSQEDE
Sbjct: 121 TNKLARLRSQEDE 133

The following BLAST results are available for this feature:
BLAST of CmoCh07G001400 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RL321_ARATH4.1e-6086.4760S ribosomal protein L32-1 OS=Arabidopsis thaliana GN=RPL32A PE=2 SV=2[more]
RL322_ARATH2.7e-5984.2160S ribosomal protein L32-2 OS=Arabidopsis thaliana GN=RPL32B PE=2 SV=1[more]
RL32_CANLF3.2e-4467.6960S ribosomal protein L32 OS=Canis lupus familiaris GN=RPL32 PE=1 SV=1[more]
RL32_RAT3.2e-4467.6960S ribosomal protein L32 OS=Rattus norvegicus GN=Rpl32 PE=1 SV=2[more]
RL32_PIG3.2e-4467.6960S ribosomal protein L32 OS=Sus scrofa GN=RPL32 PE=1 SV=3[more]
BLAST of CmoCh07G001400 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KLV4_CUCSA1.2e-6698.50Uncharacterized protein OS=Cucumis sativus GN=Csa_6G521090 PE=4 SV=1[more]
B9T5H6_RICCO1.0e-6596.9960S ribosomal protein L32, putative OS=Ricinus communis GN=RCOM_0379000 PE=4 SV=... [more]
A0A0D2UMX8_GOSRA1.3e-6596.99Uncharacterized protein OS=Gossypium raimondii GN=B456_009G158000 PE=4 SV=1[more]
A0A0B0PYZ4_GOSAR1.3e-6596.9960S ribosomal L32-1-like protein OS=Gossypium arboreum GN=F383_05631 PE=4 SV=1[more]
A0A0B0P8C4_GOSAR1.3e-6596.9960S ribosomal protein L32-1 OS=Gossypium arboreum GN=F383_26871 PE=4 SV=1[more]
BLAST of CmoCh07G001400 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G18100.12.3e-6186.47 Ribosomal protein L32e[more]
AT5G46430.11.5e-6084.21 Ribosomal protein L32e[more]
BLAST of CmoCh07G001400 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449433704|ref|XP_004134637.1|1.7e-6698.50PREDICTED: 60S ribosomal protein L32-1-like [Cucumis sativus][more]
gi|659078356|ref|XP_008439684.1|6.6e-6697.74PREDICTED: 60S ribosomal protein L32-1-like [Cucumis melo][more]
gi|255585616|ref|XP_002533495.1|1.5e-6596.99PREDICTED: 60S ribosomal protein L32-1 [Ricinus communis][more]
gi|728841735|gb|KHG21178.1|1.9e-6596.9960S ribosomal protein L32-1 [Gossypium arboreum][more]
gi|659068321|ref|XP_008443854.1|1.9e-6596.99PREDICTED: 60S ribosomal protein L32-1 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001515Ribosomal_L32e
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0044262 cellular carbohydrate metabolic process
biological_process GO:0035194 posttranscriptional gene silencing by RNA
biological_process GO:0070918 production of small RNA involved in gene silencing by RNA
biological_process GO:0006364 rRNA processing
biological_process GO:0044723 single-organism carbohydrate metabolic process
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0043022 ribosome binding
molecular_function GO:0070569 uridylyltransferase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh07G001400.1CmoCh07G001400.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001515Ribosomal protein L32ePRODOMPD003823coord: 21..122
score: 1.0
IPR001515Ribosomal protein L32ePFAMPF01655Ribosomal_L32ecoord: 16..122
score: 3.4
IPR001515Ribosomal protein L32eSMARTSM01393Ribosomal_L32e_2coord: 15..122
score: 1.6
IPR001515Ribosomal protein L32eunknownSSF52042Ribosomal protein L32ecoord: 2..131
score: 6.41
NoneNo IPR availablePANTHERPTHR2341360S RIBOSOMAL PROTEIN L32 AND DNA-DIRECTED RNA POLYMERASE II, SUBUNIT Ncoord: 1..133
score: 2.9E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh07G001400Cucsa.212580Cucumber (Gy14) v1cgycmoB0620
CmoCh07G001400Cucsa.047410Cucumber (Gy14) v1cgycmoB0043
CmoCh07G001400CmaCh13G005680Cucurbita maxima (Rimu)cmacmoB240
CmoCh07G001400CmaCh18G004510Cucurbita maxima (Rimu)cmacmoB429
CmoCh07G001400CmaCh03G013660Cucurbita maxima (Rimu)cmacmoB672
CmoCh07G001400CmaCh07G001430Cucurbita maxima (Rimu)cmacmoB875
CmoCh07G001400Cla009740Watermelon (97103) v1cmowmB816
CmoCh07G001400Cla019619Watermelon (97103) v1cmowmB809
CmoCh07G001400Csa6G521090Cucumber (Chinese Long) v2cmocuB865
CmoCh07G001400Csa1G462020Cucumber (Chinese Long) v2cmocuB834
CmoCh07G001400MELO3C002703Melon (DHL92) v3.5.1cmomeB771
CmoCh07G001400MELO3C007167Melon (DHL92) v3.5.1cmomeB782
CmoCh07G001400ClCG01G024240Watermelon (Charleston Gray)cmowcgB755
CmoCh07G001400ClCG03G007200Watermelon (Charleston Gray)cmowcgB760
CmoCh07G001400CSPI06G35930Wild cucumber (PI 183967)cmocpiB873
CmoCh07G001400CSPI01G21590Wild cucumber (PI 183967)cmocpiB844
CmoCh07G001400Lsi02G008550Bottle gourd (USVL1VR-Ls)cmolsiB783
CmoCh07G001400Lsi01G001840Bottle gourd (USVL1VR-Ls)cmolsiB774
CmoCh07G001400Cp4.1LG09g07730Cucurbita pepo (Zucchini)cmocpeB798
CmoCh07G001400Cp4.1LG10g05880Cucurbita pepo (Zucchini)cmocpeB801
CmoCh07G001400Cp4.1LG19g06210Cucurbita pepo (Zucchini)cmocpeB817
CmoCh07G001400Cp4.1LG20g04890Cucurbita pepo (Zucchini)cmocpeB818
CmoCh07G001400MELO3C002703.2Melon (DHL92) v3.6.1cmomedB875
CmoCh07G001400MELO3C007167.2Melon (DHL92) v3.6.1cmomedB886
CmoCh07G001400CsaV3_1G032790Cucumber (Chinese Long) v3cmocucB0988
CmoCh07G001400CsaV3_6G051400Cucumber (Chinese Long) v3cmocucB1019
CmoCh07G001400Cla97C01G024200Watermelon (97103) v2cmowmbB849
CmoCh07G001400Cla97C03G058440Watermelon (97103) v2cmowmbB857
CmoCh07G001400Bhi08G001739Wax gourdcmowgoB1074
CmoCh07G001400Bhi03G000035Wax gourdcmowgoB1062
CmoCh07G001400CsGy6G035350Cucumber (Gy14) v2cgybcmoB843
CmoCh07G001400CsGy1G021250Cucumber (Gy14) v2cgybcmoB132
CmoCh07G001400Carg23086Silver-seed gourdcarcmoB1281
CmoCh07G001400Carg19912Silver-seed gourdcarcmoB1083
CmoCh07G001400Carg15383Silver-seed gourdcarcmoB0745
CmoCh07G001400Carg14552Silver-seed gourdcarcmoB0210
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh07G001400CmoCh13G005970Cucurbita moschata (Rifu)cmocmoB190
CmoCh07G001400CmoCh18G004260Cucurbita moschata (Rifu)cmocmoB350
CmoCh07G001400CmoCh03G013620Cucurbita moschata (Rifu)cmocmoB459
The following block(s) are covering this gene:

None