CmoCh03G013620 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh03G013620
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description60S ribosomal protein L32, putative
LocationCmo_Chr03 : 10041031 .. 10042632 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGTGCCGTTGCTGACGAAGAAGATCGTTAAGAAGCGGGTTAAGCAGTTCAAAAGGCCCCAGAGTGACCGCAAGATCTCTGTCAAAGTATGTACATGAACTATTGTTAGTTTTCCTCTGCATAACTAGAATTTCTGCTTGCTAGTGATTTTGCATTCAACTATGTGTATATGCATACGAGAATTGTGTTTCGCTCTGCTCACTGGTGATGATGGAGACGTTTTAATTCTCATTGAATCTGTACAATTTTCCATCTCGATCTTTAAGTTGTTCTGTTGATTATTCGGTGCTAACAGTCCATTTATCTCATCAAGGAATGTCACGAAGTATTTTGTCGCTCCATTCTTATTTGCATTGCTTGATACTATCGATGTTTAGCATAATGTGTCGTTAAGTTGTATAAATTGTTCAAAACCACGATAGTTTTTTCCTCGTTTTCAGTTTTCTCATTGTTCCACCTCTCTTACTGCTATCGCTTAATGAAATGTTGTTCAACCTACCACTGTTTAAATTTTATAACAAGAGTATGCTACAGCAATGATGTTTACCGTGGCGAATATTGGTGCAACAAGTTCTTTGGCTTTTGAATGATAAGGTCGATATCATGCAATAAGAATCAGTATGTTGTTCAGTAAACGCTAGTTGCATTGCAATTACATATTGAAGTTCAATTCAATTCTCTAACAATGGCTCTCTCCACCAGTATCAGCAGTGTTCTTTTCTTTATCATAAATTTTTGTGGAGTTAATTGTCCGTGATAGCTGGTTTCTTTATCCAGCATTTTCTTTGAAGTGCAAAGATTGCTACCCTGTATAGAGTTTCATTATCCTCTTCTGAATGCTTTTAAAATCCTTTTCTTGTTTTCTTATGGGCTTTCTGTCCCTGCAACCTTGCTTATAATTCTACTGCTATCACTTGCCATGATTTAACCATAAGTTGAGTGGTGATGTGACATGTCGTGTTGTCCTTATTGGTAAACTATACCCAATTATCTTTAATACTTTGTTTGTTTTGTATCCTTTATCCTTGTATCTTACACCTGCTTGATGCATCTTTGTATTTTGTGATCTATCTTATGTATTAGCTTAATGTGAAGTCAAACATGTGCATAAATTTTTTTACCTCCTGTAAATTTACCAAGTGATTGCTCAAATGTACGTTGACAGACAAACTGGCGTAGACCAAAGGGTATTGATTCTCGTGTTCGACGGAAGTTCAAAGGATGCACTTTGATGCCAAACATTGGTTATGGTACTGACAAGAAGACCCGTCATTATCTTCCTAATGGATTCAAGAAGTTCGTTGTGCACAACGTCAAGGAGCTTGAACTGTTGATGATGCACAATAGGCAAGCACTGATCTCTTCACATTTCATTTGAATTATGTCATTACTCCTGAACTCGATGATTAACTAGATTTAGAAAGATATATTGCATGGCTGATTCATTTTTCTAATTCAATTATTTCAGGACTTACTGTGCTGAGATTGCACATGATGTTTCCACAAGAAAGAGGAAGGAGATTGTGGAGAGAGCTGCCCAGCTCGATGTAGTTGTCACCAACAAGCTTGCTAGGTTGCGCAGCCAGGAGGATGAATGA

mRNA sequence

ATGGCGGTGCCGTTGCTGACGAAGAAGATCGTTAAGAAGCGGGTTAAGCAGTTCAAAAGGCCCCAGAGTGACCGCAAGATCTCTGTCAAAACAAACTGGCGTAGACCAAAGGGTATTGATTCTCGTGTTCGACGGAAGTTCAAAGGATGCACTTTGATGCCAAACATTGGTTATGGTACTGACAAGAAGACCCGTCATTATCTTCCTAATGGATTCAAGAAGTTCGTTGTGCACAACGTCAAGGAGCTTGAACTGACTTACTGTGCTGAGATTGCACATGATGTTTCCACAAGAAAGAGGAAGGAGATTGTGGAGAGAGCTGCCCAGCTCGATGTAGTTGTCACCAACAAGCTTGCTAGGTTGCGCAGCCAGGAGGATGAATGA

Coding sequence (CDS)

ATGGCGGTGCCGTTGCTGACGAAGAAGATCGTTAAGAAGCGGGTTAAGCAGTTCAAAAGGCCCCAGAGTGACCGCAAGATCTCTGTCAAAACAAACTGGCGTAGACCAAAGGGTATTGATTCTCGTGTTCGACGGAAGTTCAAAGGATGCACTTTGATGCCAAACATTGGTTATGGTACTGACAAGAAGACCCGTCATTATCTTCCTAATGGATTCAAGAAGTTCGTTGTGCACAACGTCAAGGAGCTTGAACTGACTTACTGTGCTGAGATTGCACATGATGTTTCCACAAGAAAGAGGAAGGAGATTGTGGAGAGAGCTGCCCAGCTCGATGTAGTTGTCACCAACAAGCTTGCTAGGTTGCGCAGCCAGGAGGATGAATGA
Homology
[Close]
BLAST of CmoCh03G013620 vs. Swiss-Prot
Match: RL321_ARATH (60S ribosomal protein L32-1 OS=Arabidopsis thaliana GN=RPL32A PE=2 SV=2)

HSP 1 Score: 211.1 bits (536), Expect = 7.2e-54
Identity = 108/133 (81.20%), Postives = 119/133 (89.47%), Query Frame = 1 

Query: 1   MAVPLLTKKIVKKRVKQFKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60
           MAVPLLTKK+VKKR  +F RPQSDR+I+VK +WRRPKGIDSRVRRKFKG TLMPN+GYG+
Sbjct: 1   MAVPLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYGS 60

Query: 61  DKKTRHYLPNGFKKFVVHNVKELEL------TYCAEIAHDVSTRKRKEIVERAAQLDVVV 120
           DKKTRHYLPNGFKKFVVHN  ELEL      TYCAEIAH+VST+KRK IVERA+QLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFVVHNTSELELLMMHNRTYCAEIAHNVSTKKRKAIVERASQLDVVV 120

Query: 121 TNKLARLRSQEDE 128
           TN+LARLRSQEDE
Sbjct: 121 TNRLARLRSQEDE 133

[Close]
BLAST of CmoCh03G013620 vs. Swiss-Prot
Match: RL322_ARATH (60S ribosomal protein L32-2 OS=Arabidopsis thaliana GN=RPL32B PE=2 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 4.7e-53
Identity = 105/133 (78.95%), Postives = 118/133 (88.72%), Query Frame = 1 

Query: 1   MAVPLLTKKIVKKRVKQFKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60
           MAVPLLTKK+VKKR  +F RPQSDR+I+VK +WRRPKGIDSRVRRKFKG TLMPN+GYG+
Sbjct: 1   MAVPLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYGS 60

Query: 61  DKKTRHYLPNGFKKFVVHNVKELEL------TYCAEIAHDVSTRKRKEIVERAAQLDVVV 120
           DKKTRHYLPNGFKKF+VHN  ELEL      TYCAEIAH++ST+KRK IVERA+QLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFIVHNTSELELLMMHNRTYCAEIAHNISTKKRKAIVERASQLDVVV 120

Query: 121 TNKLARLRSQEDE 128
           +NKL RLRSQEDE
Sbjct: 121 SNKLGRLRSQEDE 133

[Close]
BLAST of CmoCh03G013620 vs. Swiss-Prot
Match: RL32_HUMAN (60S ribosomal protein L32 OS=Homo sapiens GN=RPL32 PE=1 SV=2)

HSP 1 Score: 167.2 bits (422), Expect = 1.2e-40
Identity = 85/130 (65.38%), Postives = 107/130 (82.31%), Query Frame = 1 

Query: 4   PLLTKKIVKKRVKQFKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGTDKK 63
           PL+  KIVKKR K+F R QSDR + +K NWR+P+GID+RVRR+FKG  LMPNIGYG++KK
Sbjct: 6   PLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKK 65

Query: 64  TRHYLPNGFKKFVVHNVKELEL------TYCAEIAHDVSTRKRKEIVERAAQLDVVVTNK 123
           T+H LP+GF+KF+VHNVKELE+      +YCAEIAH+VS++ RK IVERAAQL + VTN 
Sbjct: 66  TKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNP 125

Query: 124 LARLRSQEDE 128
            ARLRS+E+E
Sbjct: 126 NARLRSEENE 135

[Close]
BLAST of CmoCh03G013620 vs. Swiss-Prot
Match: RL32_RAT (60S ribosomal protein L32 OS=Rattus norvegicus GN=Rpl32 PE=1 SV=2)

HSP 1 Score: 167.2 bits (422), Expect = 1.2e-40
Identity = 85/130 (65.38%), Postives = 107/130 (82.31%), Query Frame = 1 

Query: 4   PLLTKKIVKKRVKQFKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGTDKK 63
           PL+  KIVKKR K+F R QSDR + +K NWR+P+GID+RVRR+FKG  LMPNIGYG++KK
Sbjct: 6   PLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKK 65

Query: 64  TRHYLPNGFKKFVVHNVKELEL------TYCAEIAHDVSTRKRKEIVERAAQLDVVVTNK 123
           T+H LP+GF+KF+VHNVKELE+      +YCAEIAH+VS++ RK IVERAAQL + VTN 
Sbjct: 66  TKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNP 125

Query: 124 LARLRSQEDE 128
            ARLRS+E+E
Sbjct: 126 NARLRSEENE 135

[Close]
BLAST of CmoCh03G013620 vs. Swiss-Prot
Match: RL32_PIG (60S ribosomal protein L32 OS=Sus scrofa GN=RPL32 PE=1 SV=3)

HSP 1 Score: 167.2 bits (422), Expect = 1.2e-40
Identity = 85/130 (65.38%), Postives = 107/130 (82.31%), Query Frame = 1 

Query: 4   PLLTKKIVKKRVKQFKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGTDKK 63
           PL+  KIVKKR K+F R QSDR + +K NWR+P+GID+RVRR+FKG  LMPNIGYG++KK
Sbjct: 6   PLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKK 65

Query: 64  TRHYLPNGFKKFVVHNVKELEL------TYCAEIAHDVSTRKRKEIVERAAQLDVVVTNK 123
           T+H LP+GF+KF+VHNVKELE+      +YCAEIAH+VS++ RK IVERAAQL + VTN 
Sbjct: 66  TKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNP 125

Query: 124 LARLRSQEDE 128
            ARLRS+E+E
Sbjct: 126 NARLRSEENE 135

[Close]
BLAST of CmoCh03G013620 vs. TrEMBL
Match: A0A0A0KLV4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G521090 PE=4 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 4.3e-61
Identity = 126/133 (94.74%), Postives = 126/133 (94.74%), Query Frame = 1 

Query: 1   MAVPLLTKKIVKKRVKQFKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60
           MAVPLLTKKIVKKRVKQFKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGT
Sbjct: 1   MAVPLLTKKIVKKRVKQFKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60

Query: 61  DKKTRHYLPNGFKKFVVHNVKELEL------TYCAEIAHDVSTRKRKEIVERAAQLDVVV 120
           DKKTRHYLPNGFKKFVVHNV ELEL      TYCAEIAHDVSTRKRKEIVERAAQLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFVVHNVTELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVV 120

Query: 121 TNKLARLRSQEDE 128
           TNKLARLRSQEDE
Sbjct: 121 TNKLARLRSQEDE 133

[Close]
BLAST of CmoCh03G013620 vs. TrEMBL
Match: I3NMP3_HEVBR (60S ribosomal protein L32A OS=Hevea brasiliensis GN=RPL32B PE=2 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 2.1e-60
Identity = 124/133 (93.23%), Postives = 127/133 (95.49%), Query Frame = 1 

Query: 1   MAVPLLTKKIVKKRVKQFKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60
           MAVPLL+KKIVKKRVK+FKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYG+
Sbjct: 1   MAVPLLSKKIVKKRVKKFKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGS 60

Query: 61  DKKTRHYLPNGFKKFVVHNVKELEL------TYCAEIAHDVSTRKRKEIVERAAQLDVVV 120
           DKKTRHYLPNGFKKFVVHNVKELEL      TYCAEIAHDVSTRKRKEIVERAAQLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFVVHNVKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVV 120

Query: 121 TNKLARLRSQEDE 128
           TNKLARLRSQEDE
Sbjct: 121 TNKLARLRSQEDE 133

[Close]
BLAST of CmoCh03G013620 vs. TrEMBL
Match: B9T5H6_RICCO (60S ribosomal protein L32, putative OS=Ricinus communis GN=RCOM_0379000 PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 2.1e-60
Identity = 124/133 (93.23%), Postives = 127/133 (95.49%), Query Frame = 1 

Query: 1   MAVPLLTKKIVKKRVKQFKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60
           MAVPLL+KKIVKKRVKQFKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYG+
Sbjct: 1   MAVPLLSKKIVKKRVKQFKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGS 60

Query: 61  DKKTRHYLPNGFKKFVVHNVKELEL------TYCAEIAHDVSTRKRKEIVERAAQLDVVV 120
           DKKTRHYLPNGFKKFVVHNV+ELEL      TYCAEIAHDVSTRKRKEIVERAAQLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFVVHNVQELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVV 120

Query: 121 TNKLARLRSQEDE 128
           TNKLARLRSQEDE
Sbjct: 121 TNKLARLRSQEDE 133

[Close]
BLAST of CmoCh03G013620 vs. TrEMBL
Match: A0A061GD77_THECC (Ribosomal protein L32e isoform 1 OS=Theobroma cacao GN=TCM_029566 PE=4 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 2.8e-60
Identity = 123/133 (92.48%), Postives = 127/133 (95.49%), Query Frame = 1 

Query: 1   MAVPLLTKKIVKKRVKQFKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60
           MAVPLL+KKIVKKRVK+FKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYG+
Sbjct: 1   MAVPLLSKKIVKKRVKKFKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGS 60

Query: 61  DKKTRHYLPNGFKKFVVHNVKELEL------TYCAEIAHDVSTRKRKEIVERAAQLDVVV 120
           DKKTRHYLPNGFKKFVVHN+KELEL      TYCAEIAHDVSTRKRKEIVERAAQLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFVVHNIKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVV 120

Query: 121 TNKLARLRSQEDE 128
           TNKLARLRSQEDE
Sbjct: 121 TNKLARLRSQEDE 133

[Close]
BLAST of CmoCh03G013620 vs. TrEMBL
Match: A9PBE9_POPTR (Ribosomal protein L32 OS=Populus trichocarpa GN=POPTR_0001s34370g PE=2 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 6.1e-60
Identity = 123/133 (92.48%), Postives = 127/133 (95.49%), Query Frame = 1 

Query: 1   MAVPLLTKKIVKKRVKQFKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60
           MAVPLLTKKIVKKRVK+FKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYG+
Sbjct: 1   MAVPLLTKKIVKKRVKKFKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGS 60

Query: 61  DKKTRHYLPNGFKKFVVHNVKELEL------TYCAEIAHDVSTRKRKEIVERAAQLDVVV 120
           DKKTRHYLPNGFKKFVVHNVKELE+      TYCAEIAH+VSTRKRKEIVERAAQLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFVVHNVKELEVLMMHNRTYCAEIAHNVSTRKRKEIVERAAQLDVVV 120

Query: 121 TNKLARLRSQEDE 128
           TNKLARLRSQEDE
Sbjct: 121 TNKLARLRSQEDE 133

[Close]
BLAST of CmoCh03G013620 vs. TAIR10
Match: AT4G18100.1 (AT4G18100.1 Ribosomal protein L32e)

HSP 1 Score: 211.1 bits (536), Expect = 4.1e-55
Identity = 108/133 (81.20%), Postives = 119/133 (89.47%), Query Frame = 1 

Query: 1   MAVPLLTKKIVKKRVKQFKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60
           MAVPLLTKK+VKKR  +F RPQSDR+I+VK +WRRPKGIDSRVRRKFKG TLMPN+GYG+
Sbjct: 1   MAVPLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYGS 60

Query: 61  DKKTRHYLPNGFKKFVVHNVKELEL------TYCAEIAHDVSTRKRKEIVERAAQLDVVV 120
           DKKTRHYLPNGFKKFVVHN  ELEL      TYCAEIAH+VST+KRK IVERA+QLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFVVHNTSELELLMMHNRTYCAEIAHNVSTKKRKAIVERASQLDVVV 120

Query: 121 TNKLARLRSQEDE 128
           TN+LARLRSQEDE
Sbjct: 121 TNRLARLRSQEDE 133

[Close]
BLAST of CmoCh03G013620 vs. TAIR10
Match: AT5G46430.1 (AT5G46430.1 Ribosomal protein L32e)

HSP 1 Score: 208.4 bits (529), Expect = 2.6e-54
Identity = 105/133 (78.95%), Postives = 118/133 (88.72%), Query Frame = 1 

Query: 1   MAVPLLTKKIVKKRVKQFKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60
           MAVPLLTKK+VKKR  +F RPQSDR+I+VK +WRRPKGIDSRVRRKFKG TLMPN+GYG+
Sbjct: 1   MAVPLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYGS 60

Query: 61  DKKTRHYLPNGFKKFVVHNVKELEL------TYCAEIAHDVSTRKRKEIVERAAQLDVVV 120
           DKKTRHYLPNGFKKF+VHN  ELEL      TYCAEIAH++ST+KRK IVERA+QLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFIVHNTSELELLMMHNRTYCAEIAHNISTKKRKAIVERASQLDVVV 120

Query: 121 TNKLARLRSQEDE 128
           +NKL RLRSQEDE
Sbjct: 121 SNKLGRLRSQEDE 133

[Close]
BLAST of CmoCh03G013620 vs. NCBI nr
Match: gi|659078356|ref|XP_008439684.1| (PREDICTED: 60S ribosomal protein L32-1-like [Cucumis melo])

HSP 1 Score: 242.3 bits (617), Expect = 4.7e-61
Identity = 126/133 (94.74%), Postives = 127/133 (95.49%), Query Frame = 1 

Query: 1   MAVPLLTKKIVKKRVKQFKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60
           MAVPLLTKKIVKKRVKQFKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGT
Sbjct: 1   MAVPLLTKKIVKKRVKQFKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60

Query: 61  DKKTRHYLPNGFKKFVVHNVKELEL------TYCAEIAHDVSTRKRKEIVERAAQLDVVV 120
           DKKTRHYLPNGFKKFVVHNVKELEL      TYCAEIAH+VSTRKRKEIVERAAQLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFVVHNVKELELLMMHNRTYCAEIAHNVSTRKRKEIVERAAQLDVVV 120

Query: 121 TNKLARLRSQEDE 128
           TNKLARLRSQEDE
Sbjct: 121 TNKLARLRSQEDE 133

[Close]
BLAST of CmoCh03G013620 vs. NCBI nr
Match: gi|449433704|ref|XP_004134637.1| (PREDICTED: 60S ribosomal protein L32-1-like [Cucumis sativus])

HSP 1 Score: 241.9 bits (616), Expect = 6.1e-61
Identity = 126/133 (94.74%), Postives = 126/133 (94.74%), Query Frame = 1 

Query: 1   MAVPLLTKKIVKKRVKQFKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60
           MAVPLLTKKIVKKRVKQFKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGT
Sbjct: 1   MAVPLLTKKIVKKRVKQFKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60

Query: 61  DKKTRHYLPNGFKKFVVHNVKELEL------TYCAEIAHDVSTRKRKEIVERAAQLDVVV 120
           DKKTRHYLPNGFKKFVVHNV ELEL      TYCAEIAHDVSTRKRKEIVERAAQLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFVVHNVTELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVV 120

Query: 121 TNKLARLRSQEDE 128
           TNKLARLRSQEDE
Sbjct: 121 TNKLARLRSQEDE 133

[Close]
BLAST of CmoCh03G013620 vs. NCBI nr
Match: gi|255585616|ref|XP_002533495.1| (PREDICTED: 60S ribosomal protein L32-1 [Ricinus communis])

HSP 1 Score: 239.6 bits (610), Expect = 3.0e-60
Identity = 124/133 (93.23%), Postives = 127/133 (95.49%), Query Frame = 1 

Query: 1   MAVPLLTKKIVKKRVKQFKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60
           MAVPLL+KKIVKKRVKQFKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYG+
Sbjct: 1   MAVPLLSKKIVKKRVKQFKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGS 60

Query: 61  DKKTRHYLPNGFKKFVVHNVKELEL------TYCAEIAHDVSTRKRKEIVERAAQLDVVV 120
           DKKTRHYLPNGFKKFVVHNV+ELEL      TYCAEIAHDVSTRKRKEIVERAAQLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFVVHNVQELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVV 120

Query: 121 TNKLARLRSQEDE 128
           TNKLARLRSQEDE
Sbjct: 121 TNKLARLRSQEDE 133

[Close]
BLAST of CmoCh03G013620 vs. NCBI nr
Match: gi|313586537|gb|ADR71279.1| (60S ribosomal protein L32A [Hevea brasiliensis])

HSP 1 Score: 239.6 bits (610), Expect = 3.0e-60
Identity = 124/133 (93.23%), Postives = 127/133 (95.49%), Query Frame = 1 

Query: 1   MAVPLLTKKIVKKRVKQFKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60
           MAVPLL+KKIVKKRVK+FKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYG+
Sbjct: 1   MAVPLLSKKIVKKRVKKFKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGS 60

Query: 61  DKKTRHYLPNGFKKFVVHNVKELEL------TYCAEIAHDVSTRKRKEIVERAAQLDVVV 120
           DKKTRHYLPNGFKKFVVHNVKELEL      TYCAEIAHDVSTRKRKEIVERAAQLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFVVHNVKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVV 120

Query: 121 TNKLARLRSQEDE 128
           TNKLARLRSQEDE
Sbjct: 121 TNKLARLRSQEDE 133

[Close]
BLAST of CmoCh03G013620 vs. NCBI nr
Match: gi|590622969|ref|XP_007025196.1| (Ribosomal protein L32e isoform 1 [Theobroma cacao])

HSP 1 Score: 239.2 bits (609), Expect = 4.0e-60
Identity = 123/133 (92.48%), Postives = 127/133 (95.49%), Query Frame = 1 

Query: 1   MAVPLLTKKIVKKRVKQFKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60
           MAVPLL+KKIVKKRVK+FKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYG+
Sbjct: 1   MAVPLLSKKIVKKRVKKFKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGS 60

Query: 61  DKKTRHYLPNGFKKFVVHNVKELEL------TYCAEIAHDVSTRKRKEIVERAAQLDVVV 120
           DKKTRHYLPNGFKKFVVHN+KELEL      TYCAEIAHDVSTRKRKEIVERAAQLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFVVHNIKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVV 120

Query: 121 TNKLARLRSQEDE 128
           TNKLARLRSQEDE
Sbjct: 121 TNKLARLRSQEDE 133

The following BLAST results are available for this feature:
BLAST of CmoCh03G013620 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RL321_ARATH7.2e-5481.2060S ribosomal protein L32-1 OS=Arabidopsis thaliana GN=RPL32A PE=2 SV=2[more]
RL322_ARATH4.7e-5378.9560S ribosomal protein L32-2 OS=Arabidopsis thaliana GN=RPL32B PE=2 SV=1[more]
RL32_HUMAN1.2e-4065.3860S ribosomal protein L32 OS=Homo sapiens GN=RPL32 PE=1 SV=2[more]
RL32_RAT1.2e-4065.3860S ribosomal protein L32 OS=Rattus norvegicus GN=Rpl32 PE=1 SV=2[more]
RL32_PIG1.2e-4065.3860S ribosomal protein L32 OS=Sus scrofa GN=RPL32 PE=1 SV=3[more]
BLAST of CmoCh03G013620 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KLV4_CUCSA4.3e-6194.74Uncharacterized protein OS=Cucumis sativus GN=Csa_6G521090 PE=4 SV=1[more]
I3NMP3_HEVBR2.1e-6093.2360S ribosomal protein L32A OS=Hevea brasiliensis GN=RPL32B PE=2 SV=1[more]
B9T5H6_RICCO2.1e-6093.2360S ribosomal protein L32, putative OS=Ricinus communis GN=RCOM_0379000 PE=4 SV=... [more]
A0A061GD77_THECC2.8e-6092.48Ribosomal protein L32e isoform 1 OS=Theobroma cacao GN=TCM_029566 PE=4 SV=1[more]
A9PBE9_POPTR6.1e-6092.48Ribosomal protein L32 OS=Populus trichocarpa GN=POPTR_0001s34370g PE=2 SV=1[more]
BLAST of CmoCh03G013620 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G18100.14.1e-5581.20 Ribosomal protein L32e[more]
AT5G46430.12.6e-5478.95 Ribosomal protein L32e[more]
BLAST of CmoCh03G013620 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659078356|ref|XP_008439684.1|4.7e-6194.74PREDICTED: 60S ribosomal protein L32-1-like [Cucumis melo][more]
gi|449433704|ref|XP_004134637.1|6.1e-6194.74PREDICTED: 60S ribosomal protein L32-1-like [Cucumis sativus][more]
gi|255585616|ref|XP_002533495.1|3.0e-6093.23PREDICTED: 60S ribosomal protein L32-1 [Ricinus communis][more]
gi|313586537|gb|ADR71279.1|3.0e-6093.2360S ribosomal protein L32A [Hevea brasiliensis][more]
gi|590622969|ref|XP_007025196.1|4.0e-6092.48Ribosomal protein L32e isoform 1 [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001515Ribosomal_L32e
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0044262 cellular carbohydrate metabolic process
biological_process GO:0035194 posttranscriptional gene silencing by RNA
biological_process GO:0070918 production of small RNA involved in gene silencing by RNA
biological_process GO:0006364 rRNA processing
biological_process GO:0044723 single-organism carbohydrate metabolic process
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0043022 ribosome binding
molecular_function GO:0070569 uridylyltransferase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh03G013620.1CmoCh03G013620.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001515Ribosomal protein L32ePRODOMPD003823coord: 21..116
score: 8.0
IPR001515Ribosomal protein L32ePFAMPF01655Ribosomal_L32ecoord: 16..116
score: 1.6
IPR001515Ribosomal protein L32eSMARTSM01393Ribosomal_L32e_2coord: 15..116
score: 6.1
IPR001515Ribosomal protein L32eunknownSSF52042Ribosomal protein L32ecoord: 2..125
score: 1.57
NoneNo IPR availablePANTHERPTHR2341360S RIBOSOMAL PROTEIN L32 AND DNA-DIRECTED RNA POLYMERASE II, SUBUNIT Ncoord: 1..127
score: 6.4E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh03G013620Cucsa.212580Cucumber (Gy14) v1cgycmoB0619
CmoCh03G013620Cucsa.047410Cucumber (Gy14) v1cgycmoB0040
CmoCh03G013620CmaCh13G005680Cucurbita maxima (Rimu)cmacmoB236
CmoCh03G013620CmaCh18G004510Cucurbita maxima (Rimu)cmacmoB417
CmoCh03G013620CmaCh03G013660Cucurbita maxima (Rimu)cmacmoB653
CmoCh03G013620CmaCh07G001430Cucurbita maxima (Rimu)cmacmoB861
CmoCh03G013620Cla009740Watermelon (97103) v1cmowmB619
CmoCh03G013620Cla019619Watermelon (97103) v1cmowmB613
CmoCh03G013620Csa6G521090Cucumber (Chinese Long) v2cmocuB667
CmoCh03G013620Csa1G462020Cucumber (Chinese Long) v2cmocuB638
CmoCh03G013620MELO3C002703Melon (DHL92) v3.5.1cmomeB582
CmoCh03G013620MELO3C007167Melon (DHL92) v3.5.1cmomeB606
CmoCh03G013620ClCG01G024240Watermelon (Charleston Gray)cmowcgB573
CmoCh03G013620ClCG03G007200Watermelon (Charleston Gray)cmowcgB582
CmoCh03G013620CSPI06G35930Wild cucumber (PI 183967)cmocpiB678
CmoCh03G013620CSPI01G21590Wild cucumber (PI 183967)cmocpiB649
CmoCh03G013620Lsi02G008550Bottle gourd (USVL1VR-Ls)cmolsiB593
CmoCh03G013620Lsi01G001840Bottle gourd (USVL1VR-Ls)cmolsiB588
CmoCh03G013620Cp4.1LG09g07730Cucurbita pepo (Zucchini)cmocpeB603
CmoCh03G013620Cp4.1LG10g05880Cucurbita pepo (Zucchini)cmocpeB606
CmoCh03G013620Cp4.1LG19g06210Cucurbita pepo (Zucchini)cmocpeB618
CmoCh03G013620Cp4.1LG20g04890Cucurbita pepo (Zucchini)cmocpeB628
CmoCh03G013620MELO3C002703.2Melon (DHL92) v3.6.1cmomedB668
CmoCh03G013620MELO3C007167.2Melon (DHL92) v3.6.1cmomedB695
CmoCh03G013620CsaV3_1G032790Cucumber (Chinese Long) v3cmocucB0761
CmoCh03G013620CsaV3_6G051400Cucumber (Chinese Long) v3cmocucB0791
CmoCh03G013620Cla97C01G024200Watermelon (97103) v2cmowmbB639
CmoCh03G013620Cla97C03G058440Watermelon (97103) v2cmowmbB655
CmoCh03G013620Bhi08G001739Wax gourdcmowgoB0804
CmoCh03G013620Bhi03G000035Wax gourdcmowgoB0782
CmoCh03G013620CsGy6G035350Cucumber (Gy14) v2cgybcmoB809
CmoCh03G013620CsGy1G021250Cucumber (Gy14) v2cgybcmoB117
CmoCh03G013620Carg23086Silver-seed gourdcarcmoB1280
CmoCh03G013620Carg19912Silver-seed gourdcarcmoB1082
CmoCh03G013620Carg15383Silver-seed gourdcarcmoB0742
CmoCh03G013620Carg14552Silver-seed gourdcarcmoB0205
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh03G013620CmoCh13G005970Cucurbita moschata (Rifu)cmocmoB183
CmoCh03G013620CmoCh18G004260Cucurbita moschata (Rifu)cmocmoB334
CmoCh03G013620CmoCh07G001400Cucurbita moschata (Rifu)cmocmoB459
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh03G013620Cucurbita moschata (Rifu)cmocmoB418