CmoCh06G016870 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh06G016870
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Transmembrane protein, putative
Location	Cmo_Chr06 : 11640487 .. 11641860 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCCTCGTTGTCGCTGTGGCGTTTCTGAGCAACAGTCCCGCCGTTGACGCCGCCAGAATAGTGCCCGGAGACTTTGCGAGCGCCAATCACTTGGAGATGTACCCGTCGGCGTACGAGCATGCGAAGAATACGGTGTCGTGTTGGCTCGGCCGCTTGTCGTCCGGCCCCAGCCCCAAAGGTCCCGGCCACTGATTTCTCCGCAGCCAACCGGCCGTCGTTCGCCGTACCAGCGCTTTGCTGAAGCCCATCTTCCTTTTCTCCCTCTGTTCGTTTTTTCAATTCATTTGATGTATTTATTTTATTATTTATAGTTAAGTGTCAAAAGACCAAAATGGTCAAAGGTTCTTTTATTTTAGCGACATTTAAGTATGAGAAATTCGGATATTTACGTCTTTAGATCTGAATTTTTCTATTTATTTGCAATGATATGATATTAATGAAAATTAAAAGAAGACAAATATAATAAATTTGAAATAGGAATTTTATTTATTATTTGTCCGCTATTTTATTATGATTCATGTCTAACACGTTAATATATTGATACATGAGAAATTGCTTAATGTAAGTGTATGAATTAAATTTTAATACAGTGAACGTATATTAAAATTTCGTCTTTTAAATTGATGTTCTAACTCACTTAAATACCACAAAAAATTTAAACCCGTCAAATTAATAATAGAAGAGGCTCGATAAATTGCTTACAAATTTAAAATTATTCGTAAAAAATTGATCTTTAAAGTTTTGGTTTCGAGTTTAGCAATATTTGGAGGTGGGAAATTAAAATTTTGAGCTGTTGGTTGAGATATTAAGTTTCAATGTTAAATCCAACGTGATTATATACAGAACATACAATAAGTATGGATTAACCGAAAGTGGATTAAAAATTAATGAGAGAAATGAACCAACCAGAATATGCTTGAAGGGCAGGCAAAGCCACGTAGCTGGGAAACGACCAAACAGGCTTTCATCACAATGGGGGGATAAGAGCCGAAAATGGAAACCGCCCAATTTCAGTCTGTGAAAGAAGATGTGTAGGAAAGTGCTTTGCCCACATCCGCCACTACCACTTTCATTTTCCATTGAACACAATCGGAGTGCTTGCCTACTCTAATCTGCCCATTTCTCAGCGGGTAAGTGATGATTTCTTCATGGGTTTTCATCCCCCACTTCGATTGCATCGTTTTCTTTGGATATTTGATATACCCTTTTCGTAGAATTGATATGGACGGTGTTGTTTTTGATATCATTGCTTGTCAGAGTGTAACCTAGAACCGTGGTGGCCGGAGAAGTGGATTTATTGCTCTGTGGTGTACCGTTTATGTGCTATTAGTGTCTTTTGATTTTGGTTCTGAAATTCTTGGTCTCCGTTGA

mRNA sequence

ATGATCCTCGTTGTCGCTGTGGCGTTTCTGAGCAACAGTCCCGCCGTTGACGCCGCCAGAATAGTGCCCGGAGACTTTGCGAGCGCCAATCACTTGGAGATGTACCCGTCGGCGTACGAGCATGCGAAGAATACGGTGTCGTGTTGGCTCGGCCGCTTGTCGTCCGGCCCCAGCCCCAAAGGAAAGTGCTTTGCCCACATCCGCCACTACCACTTTCATTTTCCATTGAACACAATCGGAGTGCTTGCCTACTCTAATCTGCCCATTTCTCAGCGGAACCGTGGTGGCCGGAGAAGTGGATTTATTGCTCTGTGGTGTACCGTTTATGTGCTATTAGTGTCTTTTGATTTTGGTTCTGAAATTCTTGGTCTCCGTTGA

Coding sequence (CDS)

ATGATCCTCGTTGTCGCTGTGGCGTTTCTGAGCAACAGTCCCGCCGTTGACGCCGCCAGAATAGTGCCCGGAGACTTTGCGAGCGCCAATCACTTGGAGATGTACCCGTCGGCGTACGAGCATGCGAAGAATACGGTGTCGTGTTGGCTCGGCCGCTTGTCGTCCGGCCCCAGCCCCAAAGGAAAGTGCTTTGCCCACATCCGCCACTACCACTTTCATTTTCCATTGAACACAATCGGAGTGCTTGCCTACTCTAATCTGCCCATTTCTCAGCGGAACCGTGGTGGCCGGAGAAGTGGATTTATTGCTCTGTGGTGTACCGTTTATGTGCTATTAGTGTCTTTTGATTTTGGTTCTGAAATTCTTGGTCTCCGTTGA

Homology

[Close]

BLAST of CmoCh06G016870 vs. TrEMBL
Match: A0A0A0KU27_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G011070 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.1e-20
Identity = 50/61 (81.97%), Postives = 55/61 (90.16%), Query Frame = 1


Query: 1  MILVVAVAFLSNSPAVDAARIVPGDFASANHLEMYPSAYEHAKNTVSCWLGRLSSGPSPK 60
          ++LVVA+  LSNS  VDAAR+VPGDFAS NHLEMYPSAYE AK+TVSCWLGRLSSGPSPK
Sbjct: 11 IVLVVALTLLSNSSTVDAARVVPGDFASVNHLEMYPSAYEQAKHTVSCWLGRLSSGPSPK 70

Query: 61 G 62
          G
Sbjct: 71 G 71

[Close]

BLAST of CmoCh06G016870 vs. TrEMBL
Match: A0A067L755_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05738 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 5.2e-11
Identity = 34/61 (55.74%), Postives = 49/61 (80.33%), Query Frame = 1


Query: 1  MILVVAVAFLSNSPAVDAARIVPGDFASANHLEMYPSAYEHAKNTVSCWLGRLSSGPSPK 60
          +I ++ +AF+S    V+A R++P DFASANHLE Y S YE A++T++CWLG+L+SGPSP+
Sbjct: 11 VIFLIYMAFISQVQ-VEATRVLPEDFASANHLETYSSVYEKARSTMACWLGKLASGPSPR 70

Query: 61 G 62
          G
Sbjct: 71 G 70

[Close]

BLAST of CmoCh06G016870 vs. TrEMBL
Match: A0A067LI60_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05732 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.2e-10
Identity = 33/55 (60.00%), Postives = 45/55 (81.82%), Query Frame = 1


Query: 7  VAFLSNSPAVDAARIVPGDFASANHLEMYPSAYEHAKNTVSCWLGRLSSGPSPKG 62
          +AF+S    V+A R++P DFASANHLE Y S YE A++T++CWLG+L+SGPSP+G
Sbjct: 1  MAFISQVQ-VEATRVLPEDFASANHLETYSSVYEKARSTMACWLGKLASGPSPRG 54

[Close]

BLAST of CmoCh06G016870 vs. TrEMBL
Match: B9TBZ9_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_2133810 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 4.4e-10
Identity = 35/61 (57.38%), Postives = 47/61 (77.05%), Query Frame = 1


Query: 1  MILVVAVAFLSNSPAVDAARIVPGDFASANHLEMYPSAYEHAKNTVSCWLGRLSSGPSPK 60
          ++L ++VA LS    V+A R++  DFASANHLE Y S Y+ AK+T++CWL RL+SGPSPK
Sbjct: 11 VVLFISVAILSQV-RVEAIRVLADDFASANHLESYSSVYDKAKSTMACWLERLASGPSPK 70

Query: 61 G 62
          G
Sbjct: 71 G 70

[Close]

BLAST of CmoCh06G016870 vs. TrEMBL
Match: B9IFV6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s10640g PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 7.5e-10
Identity = 33/62 (53.23%), Postives = 44/62 (70.97%), Query Frame = 1


Query: 1  MILVVAVAFLSNSP-AVDAARIVPGDFASANHLEMYPSAYEHAKNTVSCWLGRLSSGPSP 60
          ++ V+ V+ LS     V A R++PG+ A ANHLE Y S YE  KN ++CWLGRL+SGPSP
Sbjct: 11 ILFVILVSALSQQLFCVQATRVLPGELAGANHLETYSSVYEKTKNNMACWLGRLASGPSP 70

Query: 61 KG 62
          +G
Sbjct: 71 RG 72

[Close]

BLAST of CmoCh06G016870 vs. NCBI nr
Match: gi|700197850|gb|KGN53008.1| (hypothetical protein Csa_4G011070 [Cucumis sativus])

HSP 1 Score: 106.7 bits (265), Expect = 3.0e-20
Identity = 50/61 (81.97%), Postives = 55/61 (90.16%), Query Frame = 1


Query: 1  MILVVAVAFLSNSPAVDAARIVPGDFASANHLEMYPSAYEHAKNTVSCWLGRLSSGPSPK 60
          ++LVVA+  LSNS  VDAAR+VPGDFAS NHLEMYPSAYE AK+TVSCWLGRLSSGPSPK
Sbjct: 11 IVLVVALTLLSNSSTVDAARVVPGDFASVNHLEMYPSAYEQAKHTVSCWLGRLSSGPSPK 70

Query: 61 G 62
          G
Sbjct: 71 G 71

[Close]

BLAST of CmoCh06G016870 vs. NCBI nr
Match: gi|643738283|gb|KDP44271.1| (hypothetical protein JCGZ_05738 [Jatropha curcas])

HSP 1 Score: 75.5 bits (184), Expect = 7.4e-11
Identity = 34/61 (55.74%), Postives = 49/61 (80.33%), Query Frame = 1


Query: 1  MILVVAVAFLSNSPAVDAARIVPGDFASANHLEMYPSAYEHAKNTVSCWLGRLSSGPSPK 60
          +I ++ +AF+S    V+A R++P DFASANHLE Y S YE A++T++CWLG+L+SGPSP+
Sbjct: 11 VIFLIYMAFISQVQ-VEATRVLPEDFASANHLETYSSVYEKARSTMACWLGKLASGPSPR 70

Query: 61 G 62
          G
Sbjct: 71 G 70

[Close]

BLAST of CmoCh06G016870 vs. NCBI nr
Match: gi|643738277|gb|KDP44265.1| (hypothetical protein JCGZ_05732 [Jatropha curcas])

HSP 1 Score: 74.3 bits (181), Expect = 1.7e-10
Identity = 33/55 (60.00%), Postives = 45/55 (81.82%), Query Frame = 1


Query: 7  VAFLSNSPAVDAARIVPGDFASANHLEMYPSAYEHAKNTVSCWLGRLSSGPSPKG 62
          +AF+S    V+A R++P DFASANHLE Y S YE A++T++CWLG+L+SGPSP+G
Sbjct: 1  MAFISQVQ-VEATRVLPEDFASANHLETYSSVYEKARSTMACWLGKLASGPSPRG 54

[Close]

BLAST of CmoCh06G016870 vs. NCBI nr
Match: gi|223522026|gb|EEF26615.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 72.4 bits (176), Expect = 6.3e-10
Identity = 35/61 (57.38%), Postives = 47/61 (77.05%), Query Frame = 1


Query: 1  MILVVAVAFLSNSPAVDAARIVPGDFASANHLEMYPSAYEHAKNTVSCWLGRLSSGPSPK 60
          ++L ++VA LS    V+A R++  DFASANHLE Y S Y+ AK+T++CWL RL+SGPSPK
Sbjct: 11 VVLFISVAILSQV-RVEAIRVLADDFASANHLESYSSVYDKAKSTMACWLERLASGPSPK 70

Query: 61 G 62
          G
Sbjct: 71 G 70

[Close]

BLAST of CmoCh06G016870 vs. NCBI nr
Match: gi|224138838|ref|XP_002322914.1| (hypothetical protein POPTR_0016s10640g [Populus trichocarpa])

HSP 1 Score: 71.6 bits (174), Expect = 1.1e-09
Identity = 33/62 (53.23%), Postives = 44/62 (70.97%), Query Frame = 1


Query: 1  MILVVAVAFLSNSP-AVDAARIVPGDFASANHLEMYPSAYEHAKNTVSCWLGRLSSGPSP 60
          ++ V+ V+ LS     V A R++PG+ A ANHLE Y S YE  KN ++CWLGRL+SGPSP
Sbjct: 11 ILFVILVSALSQQLFCVQATRVLPGELAGANHLETYSSVYEKTKNNMACWLGRLASGPSP 70

Query: 61 KG 62
          +G
Sbjct: 71 RG 72

The following BLAST results are available for this feature:

BLAST of CmoCh06G016870 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh06G016870 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KU27_CUCSA	2.1e-20	81.97	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G011070 PE=4 SV=1	[more]
A0A067L755_JATCU	5.2e-11	55.74	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05738 PE=4 SV=1	[more]
A0A067LI60_JATCU	1.2e-10	60.00	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05732 PE=4 SV=1	[more]
B9TBZ9_RICCO	4.4e-10	57.38	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_2133810 PE=4 SV=1	[more]
B9IFV6_POPTR	7.5e-10	53.23	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s10640g PE=4 SV=1	[more]

BLAST of CmoCh06G016870 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh06G016870 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700197850\|gb\|KGN53008.1\|	3.0e-20	81.97	hypothetical protein Csa_4G011070 [Cucumis sativus]	[more]
gi\|643738283\|gb\|KDP44271.1\|	7.4e-11	55.74	hypothetical protein JCGZ_05738 [Jatropha curcas]	[more]
gi\|643738277\|gb\|KDP44265.1\|	1.7e-10	60.00	hypothetical protein JCGZ_05732 [Jatropha curcas]	[more]
gi\|223522026\|gb\|EEF26615.1\|	6.3e-10	57.38	conserved hypothetical protein [Ricinus communis]	[more]
gi\|224138838\|ref\|XP_002322914.1\|	1.1e-09	53.23	hypothetical protein POPTR_0016s10640g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh06G016870.1	CmoCh06G016870.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37245	FAMILY NOT NAMED	coord: 1..61 score: 3.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh06G016870	CmaCh06G016960	Cucurbita maxima (Rimu)	cmacmoB829
CmoCh06G016870	CmaCh14G014290	Cucurbita maxima (Rimu)	cmacmoB271
CmoCh06G016870	Csa4G011070	Cucumber (Chinese Long) v2	cmocuB823
CmoCh06G016870	MELO3C017773	Melon (DHL92) v3.5.1	cmomeB761
CmoCh06G016870	CSPI04G02750	Wild cucumber (PI 183967)	cmocpiB833
CmoCh06G016870	Lsi07G003480	Bottle gourd (USVL1VR-Ls)	cmolsiB764
CmoCh06G016870	Cp4.1LG03g13050	Cucurbita pepo (Zucchini)	cmocpeB787
CmoCh06G016870	Cp4.1LG08g06240	Cucurbita pepo (Zucchini)	cmocpeB796
CmoCh06G016870	MELO3C017773.2	Melon (DHL92) v3.6.1	cmomedB865
CmoCh06G016870	CsaV3_4G002680	Cucumber (Chinese Long) v3	cmocucB0971
CmoCh06G016870	Carg06580	Silver-seed gourd	carcmoB0167

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh06G016870	CmoCh14G014650	Cucurbita moschata (Rifu)	cmocmoB224

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh06G016870	Cucumber (Gy14) v2	cgybcmoB535
CmoCh06G016870	Silver-seed gourd	carcmoB0947
CmoCh06G016870	Watermelon (97103) v2	cmowmbB840
CmoCh06G016870	Wax gourd	cmowgoB1011
CmoCh06G016870	Wax gourd	cmowgoB1015
CmoCh06G016870	Cucumber (Gy14) v1	cgycmoB0199
CmoCh06G016870	Watermelon (Charleston Gray)	cmowcgB749
CmoCh06G016870	Watermelon (97103) v1	cmowmB788