CmoCh14G014650 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh14G014650
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Transmembrane protein, putative
Location	Cmo_Chr14 : 11865980 .. 11868436 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCTTCCACATTAGAATTACATTGTACAGGAAGAAAATGATCCAAACAGATCAAACATTGTATAGCTAAACTCCAATTTTTGGACAGAGGATGCATTGCAGAACTTGTTTAGTTCATATATATTGATGAATCTGTGGGATCAAATGTTGTTTGTAAGTTCAAAATACCATCGGCAGTTTGCACAAAAGCTTGCTAGCTTCTGTTTGCATCATGCAATTGAAATTTGTGTTTAGGACACTTTTCCTCTTCTTCAACAATTTAATCATAATGTTTGAATTCTAGGGTTTCATTTTGGTCTACTTTTAATTAGTCAATTTTAGTTTCTATAATTTCAATAAATTTTAATTTTAATCCCTATACTTCCAATAAATTATAATATTCGCCTTTCAAAGTTGATTTTTATCCGAGATGGATAAATAATAGTAGTAATTTTTATCCAAGAAAATATATTTTCTCGATATATTTTTTTTTTAAACAAAGGGTTTCTAATATAAGCTTTAAAAAAAAAAACCCGACTAAGATCCTGGGCCAAACTTGATATTTATTGAAAGCAGAAGGATTAAAATGAAAACAAATTTAAAGTTAATCATGTTTTTTATTTGGAGGATTTGTAAGATTTTATACTTTATTTGAAGTTTTTGGTGAGAAATTAATTTTTTTTCTCCATTTAAGATAAATTAAAAATAATTATTTAGTATACGGGTCTTGAAATTTTTTATATTTATATTTTGAATGTTCGCAACTGAAAAATAAAAAATAAAAAATTTATAAACCTAAACCTAATTTATCTAAAATTAAAAATTTATTAACCTAATTTATCCAAAAATAATAAATTTCATGTATTGGGTTGCTGCAAGCCATCCAATTCCTTAGTCAATCTCTTGCTTTTTAGTTCATTTAAAGTTATTTATTTATTTGAAAATAAAGAAAAATTAAAAGAAAAAAAAAATAGTCAATTCAAATATTCAAATCTTGGACCCAAATAAGCATGAGACCATTTAATTAATTTTTTTAAATATCTGTATTTTTATTTTAGAGGATTCAAAATAAATATTTAAAAGGAATATTATTTAATTTTTCAGAATTTTCAAGAAATATATATATATATAAAAAAAAGAGGTGATACTACAATACAATTTATTAATTAAGTTGAAGATAGATATATTTAATTATATAAAATAGACTTTTACGCCATAGAATTAAAATTTAATTTAGTTTATGCGAATTGACGCATAAAAACCCAAAAATAATTTGATGTTATAAAAAATAGACCAAATCAACAAATTATTATATTAATTTATATTAAAAAAAAAGACTCGAGGCAGACATTACTCGTTAAATTATATTTTTATTTTTATTTTTTATTTTAGAAAAAATAAAATTATATTTACGAAATTTTTTTGGTTAGCATTCAAAATTTCAAAACAAAAAATGGTATAATTTTAATTATAAATTTTAAAACATAAACCAAATTTGATCATTGGTTAGCAATATATATATAAATTATATTAAAAATTAATGAATATATAAATTCCATTTATAATCAATAAAATTATATTAAAAAAATAAAAGAATTTTTTTTTTTTTTTTTTGGTCAACTAGAAAACATAGATTTTGGTTGACTAGGCACTAAATTCTGTGATTTTGACCATCAGCCACAACGAAAAGAGTTTAAACAAAACACATGGGAGAAACTTTCAAAATTCCAGATCCAAAACCAAAACGAAATCGCCTTTCGGTTTGAAAAATCTACCAAAGTCAACCAACGCAGCGTTGATTCACACACACAACACGAAGATTCAACACTATGGGGGCGTTTCTGTAGCAACGAGGAGAAAGTACCTGGAAATATCCATGAGTGAGCATCAATTGCAGCCCCAAGCGCGGCGCCATCGCAAGAACACGACCAAGTAAATCAAAATTCCTTCCTCAACACGAAACCTACGCTTTCCACGACTCTACTTCCCACCAACAACCCCTCACCCATTCCATTTCGCCTATAAAATAAAGCCTCTGTCACCCATACCTTTTCTCAACTTCGTTTTCTCTCAGACATTTCATCGAACACCTTCCCTTCATTTCGCTGTTCAGTTCTCTGAACTCCATTTTCTCTCAAGACATATCATCAAACACCTTCCCATAACTTCTCTGAACCGCAATTTCTCTCAGACATATCATCGAACACCTTGCCTTCACTCTACACGCCACTGCAAGCCACAGCCTTCGGAAATGAATTTCGGGAAATTAGGTGCGGCTTTGATGATTCTCGTCGTCGTGGTGGCGTTTCTGAGCAACAGCGCCGCCGTGGACGCCGCCAGAGTGGTGCCCGGAGACTTCTCGAGCGTCAGTAACTTGGAGATGTACCCGACGGCGTACGAGCAGGCGAAGAATACGGTGTCGTGTTGGCTCGGCCGCTTGTCGTCCGGCCCCAGCCCCAAAGGTCCCGGCCACTGA

mRNA sequence

ATGGGCTTCCACATTAGAATTACATTGTACAGGAAGAAAATGATCCAAACAGATCAAACATTACATATCATCAAACACCTTCCCATAACTTCTCTGAACCGCAATTTCTCTCAGACATATCATCGAACACCTTGCCTTCACTCTACACGCCACTGCAAGCCACAGCCTTCGGAAATGAATTTCGGGAAATTAGGTGCGGCTTTGATGATTCTCGTCGTCGTGGTGGCGTTTCTGAGCAACAGCGCCGCCGTGGACGCCGCCAGAGTGGTGCCCGGAGACTTCTCGAGCGTCAGTAACTTGGAGATGTACCCGACGGCGTACGAGCAGGCGAAGAATACGGTGTCGTGTTGGCTCGGCCGCTTGTCGTCCGGCCCCAGCCCCAAAGGTCCCGGCCACTGA

Coding sequence (CDS)

ATGGGCTTCCACATTAGAATTACATTGTACAGGAAGAAAATGATCCAAACAGATCAAACATTACATATCATCAAACACCTTCCCATAACTTCTCTGAACCGCAATTTCTCTCAGACATATCATCGAACACCTTGCCTTCACTCTACACGCCACTGCAAGCCACAGCCTTCGGAAATGAATTTCGGGAAATTAGGTGCGGCTTTGATGATTCTCGTCGTCGTGGTGGCGTTTCTGAGCAACAGCGCCGCCGTGGACGCCGCCAGAGTGGTGCCCGGAGACTTCTCGAGCGTCAGTAACTTGGAGATGTACCCGACGGCGTACGAGCAGGCGAAGAATACGGTGTCGTGTTGGCTCGGCCGCTTGTCGTCCGGCCCCAGCCCCAAAGGTCCCGGCCACTGA

Homology

[Close]

BLAST of CmoCh14G014650 vs. TrEMBL
Match: A0A0A0KU27_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G011070 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 3.0e-25
Identity = 58/74 (78.38%), Postives = 67/74 (90.54%), Query Frame = 1


Query: 59  MNFGKLGAALMILVVVVAFLSNSAAVDAARVVPGDFSSVSNLEMYPTAYEQAKNTVSCWL 118
           MNFGKL   L++LVV +  LSNS+ VDAARVVPGDF+SV++LEMYP+AYEQAK+TVSCWL
Sbjct: 1   MNFGKLSVLLIVLVVALTLLSNSSTVDAARVVPGDFASVNHLEMYPSAYEQAKHTVSCWL 60

Query: 119 GRLSSGPSPKGPGH 133
           GRLSSGPSPKGPGH
Sbjct: 61  GRLSSGPSPKGPGH 74

[Close]

BLAST of CmoCh14G014650 vs. TrEMBL
Match: A0A067L755_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05738 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.0e-12
Identity = 37/74 (50.00%), Postives = 57/74 (77.03%), Query Frame = 1


Query: 59  MNFGKLGAALMILVVVVAFLSNSAAVDAARVVPGDFSSVSNLEMYPTAYEQAKNTVSCWL 118
           M+F K    L+I ++ +AF+S    V+A RV+P DF+S ++LE Y + YE+A++T++CWL
Sbjct: 1   MSFKKATLLLVIFLIYMAFISQ-VQVEATRVLPEDFASANHLETYSSVYEKARSTMACWL 60

Query: 119 GRLSSGPSPKGPGH 133
           G+L+SGPSP+GPGH
Sbjct: 61  GKLASGPSPRGPGH 73

[Close]

BLAST of CmoCh14G014650 vs. TrEMBL
Match: A0A061EK25_THECC (Uncharacterized protein (Fragment) OS=Theobroma cacao GN=TCM_019919 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 5.0e-12
Identity = 39/76 (51.32%), Postives = 54/76 (71.05%), Query Frame = 1


Query: 57  SEMNFGKLGAALMILVVVVAFLSNSAAVDAARVVPGDFSSVSNLEMYPTAYEQAKNTVSC 116
           ++MN  K+ +  +I  + VA  S  A V+A RV+P DF+  +NLE Y + YE+AK T+SC
Sbjct: 23  TKMNSRKVCSLFIIFFISVAIFSQ-AGVEATRVLPEDFAEANNLETYSSVYEKAKLTMSC 82

Query: 117 WLGRLSSGPSPKGPGH 133
           WL RL+SGPSP+GPGH
Sbjct: 83  WLQRLASGPSPRGPGH 97

[Close]

BLAST of CmoCh14G014650 vs. TrEMBL
Match: B9IFV6_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s10640g PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 6.5e-12
Identity = 36/75 (48.00%), Postives = 53/75 (70.67%), Query Frame = 1


Query: 59  MNFGKLGAALMILVVVVAFLSNSA-AVDAARVVPGDFSSVSNLEMYPTAYEQAKNTVSCW 118
           M+F K    L++ V++V+ LS     V A RV+PG+ +  ++LE Y + YE+ KN ++CW
Sbjct: 1   MDFAKRSYPLILFVILVSALSQQLFCVQATRVLPGELAGANHLETYSSVYEKTKNNMACW 60

Query: 119 LGRLSSGPSPKGPGH 133
           LGRL+SGPSP+GPGH
Sbjct: 61  LGRLASGPSPRGPGH 75

[Close]

BLAST of CmoCh14G014650 vs. TrEMBL
Match: A0A0D2UTQ2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G137700 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.4e-11
Identity = 39/74 (52.70%), Postives = 53/74 (71.62%), Query Frame = 1


Query: 59  MNFGKLGAALMILVVVVAFLSNSAAVDAARVVPGDFSSVSNLEMYPTAYEQAKNTVSCWL 118
           MN  KL   L+I V+ +A LS+   V+A RV+  DF+  ++LE Y + YE+AK T+SCWL
Sbjct: 1   MNSRKLNTLLIIFVISMAILSH-VGVEATRVLAEDFAKANHLETYSSVYEKAKFTMSCWL 60

Query: 119 GRLSSGPSPKGPGH 133
            RL+SGPSP+GPGH
Sbjct: 61  ERLASGPSPRGPGH 73

[Close]

BLAST of CmoCh14G014650 vs. NCBI nr
Match: gi|700197850|gb|KGN53008.1| (hypothetical protein Csa_4G011070 [Cucumis sativus])

HSP 1 Score: 122.9 bits (307), Expect = 4.3e-25
Identity = 58/74 (78.38%), Postives = 67/74 (90.54%), Query Frame = 1


Query: 59  MNFGKLGAALMILVVVVAFLSNSAAVDAARVVPGDFSSVSNLEMYPTAYEQAKNTVSCWL 118
           MNFGKL   L++LVV +  LSNS+ VDAARVVPGDF+SV++LEMYP+AYEQAK+TVSCWL
Sbjct: 1   MNFGKLSVLLIVLVVALTLLSNSSTVDAARVVPGDFASVNHLEMYPSAYEQAKHTVSCWL 60

Query: 119 GRLSSGPSPKGPGH 133
           GRLSSGPSPKGPGH
Sbjct: 61  GRLSSGPSPKGPGH 74

[Close]

BLAST of CmoCh14G014650 vs. NCBI nr
Match: gi|643738283|gb|KDP44271.1| (hypothetical protein JCGZ_05738 [Jatropha curcas])

HSP 1 Score: 81.3 bits (199), Expect = 1.4e-12
Identity = 37/74 (50.00%), Postives = 57/74 (77.03%), Query Frame = 1


Query: 59  MNFGKLGAALMILVVVVAFLSNSAAVDAARVVPGDFSSVSNLEMYPTAYEQAKNTVSCWL 118
           M+F K    L+I ++ +AF+S    V+A RV+P DF+S ++LE Y + YE+A++T++CWL
Sbjct: 1   MSFKKATLLLVIFLIYMAFISQ-VQVEATRVLPEDFASANHLETYSSVYEKARSTMACWL 60

Query: 119 GRLSSGPSPKGPGH 133
           G+L+SGPSP+GPGH
Sbjct: 61  GKLASGPSPRGPGH 73

[Close]

BLAST of CmoCh14G014650 vs. NCBI nr
Match: gi|590654809|ref|XP_007033806.1| (Uncharacterized protein TCM_019919, partial [Theobroma cacao])

HSP 1 Score: 79.0 bits (193), Expect = 7.1e-12
Identity = 39/76 (51.32%), Postives = 54/76 (71.05%), Query Frame = 1


Query: 57  SEMNFGKLGAALMILVVVVAFLSNSAAVDAARVVPGDFSSVSNLEMYPTAYEQAKNTVSC 116
           ++MN  K+ +  +I  + VA  S  A V+A RV+P DF+  +NLE Y + YE+AK T+SC
Sbjct: 23  TKMNSRKVCSLFIIFFISVAIFSQ-AGVEATRVLPEDFAEANNLETYSSVYEKAKLTMSC 82

Query: 117 WLGRLSSGPSPKGPGH 133
           WL RL+SGPSP+GPGH
Sbjct: 83  WLQRLASGPSPRGPGH 97

[Close]

BLAST of CmoCh14G014650 vs. NCBI nr
Match: gi|224138838|ref|XP_002322914.1| (hypothetical protein POPTR_0016s10640g [Populus trichocarpa])

HSP 1 Score: 78.6 bits (192), Expect = 9.3e-12
Identity = 36/75 (48.00%), Postives = 53/75 (70.67%), Query Frame = 1


Query: 59  MNFGKLGAALMILVVVVAFLSNSA-AVDAARVVPGDFSSVSNLEMYPTAYEQAKNTVSCW 118
           M+F K    L++ V++V+ LS     V A RV+PG+ +  ++LE Y + YE+ KN ++CW
Sbjct: 1   MDFAKRSYPLILFVILVSALSQQLFCVQATRVLPGELAGANHLETYSSVYEKTKNNMACW 60

Query: 119 LGRLSSGPSPKGPGH 133
           LGRL+SGPSP+GPGH
Sbjct: 61  LGRLASGPSPRGPGH 75

[Close]

BLAST of CmoCh14G014650 vs. NCBI nr
Match: gi|763804763|gb|KJB71701.1| (hypothetical protein B456_011G137700 [Gossypium raimondii])

HSP 1 Score: 77.4 bits (189), Expect = 2.1e-11
Identity = 39/74 (52.70%), Postives = 53/74 (71.62%), Query Frame = 1


Query: 59  MNFGKLGAALMILVVVVAFLSNSAAVDAARVVPGDFSSVSNLEMYPTAYEQAKNTVSCWL 118
           MN  KL   L+I V+ +A LS+   V+A RV+  DF+  ++LE Y + YE+AK T+SCWL
Sbjct: 1   MNSRKLNTLLIIFVISMAILSH-VGVEATRVLAEDFAKANHLETYSSVYEKAKFTMSCWL 60

Query: 119 GRLSSGPSPKGPGH 133
            RL+SGPSP+GPGH
Sbjct: 61  ERLASGPSPRGPGH 73

The following BLAST results are available for this feature:

BLAST of CmoCh14G014650 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh14G014650 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KU27_CUCSA	3.0e-25	78.38	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G011070 PE=4 SV=1	[more]
A0A067L755_JATCU	1.0e-12	50.00	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05738 PE=4 SV=1	[more]
A0A061EK25_THECC	5.0e-12	51.32	Uncharacterized protein (Fragment) OS=Theobroma cacao GN=TCM_019919 PE=4 SV=1	[more]
B9IFV6_POPTR	6.5e-12	48.00	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s10640g PE=4 SV=1	[more]
A0A0D2UTQ2_GOSRA	1.4e-11	52.70	Uncharacterized protein OS=Gossypium raimondii GN=B456_011G137700 PE=4 SV=1	[more]

BLAST of CmoCh14G014650 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh14G014650 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700197850\|gb\|KGN53008.1\|	4.3e-25	78.38	hypothetical protein Csa_4G011070 [Cucumis sativus]	[more]
gi\|643738283\|gb\|KDP44271.1\|	1.4e-12	50.00	hypothetical protein JCGZ_05738 [Jatropha curcas]	[more]
gi\|590654809\|ref\|XP_007033806.1\|	7.1e-12	51.32	Uncharacterized protein TCM_019919, partial [Theobroma cacao]	[more]
gi\|224138838\|ref\|XP_002322914.1\|	9.3e-12	48.00	hypothetical protein POPTR_0016s10640g [Populus trichocarpa]	[more]
gi\|763804763\|gb\|KJB71701.1\|	2.1e-11	52.70	hypothetical protein B456_011G137700 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh14G014650.1	CmoCh14G014650.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37245	FAMILY NOT NAMED	coord: 58..132 score: 6.7
None	No IPR available	PANTHER	PTHR37245:SF1	SUBFAMILY NOT NAMED	coord: 58..132 score: 6.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh14G014650	CmaCh14G014290	Cucurbita maxima (Rimu)	cmacmoB245
CmoCh14G014650	CmaCh06G016960	Cucurbita maxima (Rimu)	cmacmoB797
CmoCh14G014650	Cla010898	Watermelon (97103) v1	cmowmB222
CmoCh14G014650	Csa4G011070	Cucumber (Chinese Long) v2	cmocuB245
CmoCh14G014650	MELO3C017773	Melon (DHL92) v3.5.1	cmomeB232
CmoCh14G014650	ClCG07G015130	Watermelon (Charleston Gray)	cmowcgB226
CmoCh14G014650	CSPI04G02750	Wild cucumber (PI 183967)	cmocpiB250
CmoCh14G014650	Lsi07G003480	Bottle gourd (USVL1VR-Ls)	cmolsiB244
CmoCh14G014650	Cp4.1LG08g06240	Cucurbita pepo (Zucchini)	cmocpeB254
CmoCh14G014650	Cp4.1LG03g13050	Cucurbita pepo (Zucchini)	cmocpeB245
CmoCh14G014650	MELO3C017773.2	Melon (DHL92) v3.6.1	cmomedB264
CmoCh14G014650	CsaV3_4G002680	Cucumber (Chinese Long) v3	cmocucB0291
CmoCh14G014650	Cla97C07G142100	Watermelon (97103) v2	cmowmbB252

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh14G014650	CmoCh06G016870	Cucurbita moschata (Rifu)	cmocmoB224

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh14G014650	Silver-seed gourd	carcmoB0163
CmoCh14G014650	Cucumber (Gy14) v2	cgybcmoB455
CmoCh14G014650	Silver-seed gourd	carcmoB0946
CmoCh14G014650	Wax gourd	cmowgoB0314
CmoCh14G014650	Wax gourd	cmowgoB0325
CmoCh14G014650	Cucumber (Gy14) v1	cgycmoB0186