CmoCh05G007380 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh05G007380
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	60S acidic ribosomal protein P3
Location	Cmo_Chr05 : 3878937 .. 3880360 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTGACGAAGCCAAACCCTCGTTTTCCTCTCTCGCTAGGGTTTCGTCTCTCGACATAAAAACCAAACACAATCCACTGAAGAGCCGTCCACTCCAACGCCCTCTTTGTTCTTCTTCGTAATTCGCTTCAAGCAGAATCCAAGTTCGAAGATCAAACAATGGGAGTTTTCACCTTCATCTGTCGGAGCTCCGGTGGCAAGTGGACTGCCAATCAGTATTCGGGTGACCTTGAAGGCTCTGCCGATTCCACCTACGATCTCCAGAGGACGCTCGTTCAGAATGTTCTCTCCGTCGATTGCTCCGGTGGTGTTCAGTCCTCTTTCTCTTATGTCACTCCCACCTCCGCCGTTTTCCAGGTATCCATTGTTTTCTCCTCTATTCCAGTTTGTCTTGTGGATTCTTCGAATACTTCTGATTTTATTATTCGTTGTTCTCGATCTAATGTTCAAAAAAATGCTCCCCTTCTAAATGTAATCAATGTTTATTTGATTGTTTAGTCTGGTTACTAATGTTTTTGTCAATATGAATAGTTATCTTTTACCTTTCCTGTGCAATGAGGGTCGATCCTTTTTTTGGTCTATTTGATCTATAGGCTGGCGTTTAACAATTGCGATTATGGGTTTATGGGTACATGATTGATTAAGCAACTATTAATTGAGGGAATTTTCCAAATATATGGGTTTATAATGAACTAAAGCAATGTTGGTAATTATATTTTTAGTATGTTCATTGGTGAGTTCCTTGATTGGTATAACTTATCTGCATTCTCTCATTGAATTTTACATTTTCTGGATAAACATGGATTTATAAAAATATATATTTGTGTAATTCCTTGTTAGAGGTAGTCTGAATTTGCAGAGGTATTTGGAAGAAGTTGATTTGAAAGTATTTATGATTTATGATATCTCTTCAATGTCTCAATTTGCTTCCTCCCTGCTTGCCTGTTGTTACCCGTTGTGCATGCCTTGTTTAAACATTAGTATTTCAGGTGATCATTGGCGGCAGTAGTGGCGGCGGTTTCATCGGCGGTGGAGGAGCTGCAGCCGCCCCTGCTGGAGGAGATGCACCAGCTGCTGCAGAAGCCCCAGCTGAGAAGAAGGAAGAGGTGAAGGAGGAGAGTGATGACGACGACCTTGGCTTTTCACTTTTTGATTAATTGGTATAATTACTCGTTATTGTTTATCAAACTCAGAATCTTTAGCACTCAACTTTTATATTCAGCAAATTTTGGCTATGCATTTAGTTGAATTTTGCAAGTTCAATTGCTGTTCTTGTTAAGGACGTAAAATTTTGTTACTGACCTTTGTCAAATGGTTGGGGTCTTCTTTTGGGCATTGTTTTTCAAAAGGAATACCAATTTGGTGTGGTTGGTTTTAGCACATCTATTATTTAACTTGAATGGTGCCTTTTCAAGAATAGGTTGAG

mRNA sequence

TTTGACGAAGCCAAACCCTCGTTTTCCTCTCTCGCTAGGGTTTCGTCTCTCGACATAAAAACCAAACACAATCCACTGAAGAGCCGTCCACTCCAACGCCCTCTTTGTTCTTCTTCGTAATTCGCTTCAAGCAGAATCCAAGTTCGAAGATCAAACAATGGGAGTTTTCACCTTCATCTGTCGGAGCTCCGGTGGCAAGTGGACTGCCAATCAGTATTCGGGTGACCTTGAAGGCTCTGCCGATTCCACCTACGATCTCCAGAGGACGCTCGTTCAGAATGTTCTCTCCGTCGATTGCTCCGGTGGTGTTCAGTCCTCTTTCTCTTATGTCACTCCCACCTCCGCCGTTTTCCAGGTGATCATTGGCGGCAGTAGTGGCGGCGGTTTCATCGGCGGTGGAGGAGCTGCAGCCGCCCCTGCTGGAGGAGATGCACCAGCTGCTGCAGAAGCCCCAGCTGAGAAGAAGGAAGAGGTGAAGGAGGAGAGTGATGACGACGACCTTGGCTTTTCACTTTTTGATTAATTGGTATAATTACTCGTTATTGTTTATCAAACTCAGAATCTTTAGCACTCAACTTTTATATTCAGCAAATTTTGGCTATGCATTTAGTTGAATTTTGCAAGTTCAATTGCTGTTCTTGTTAAGGACGTAAAATTTTGTTACTGACCTTTGTCAAATGGTTGGGGTCTTCTTTTGGGCATTGTTTTTCAAAAGGAATACCAATTTGGTGTGGTTGGTTTTAGCACATCTATTATTTAACTTGAATGGTGCCTTTTCAAGAATAGGTTGAG

Coding sequence (CDS)

ATGGGAGTTTTCACCTTCATCTGTCGGAGCTCCGGTGGCAAGTGGACTGCCAATCAGTATTCGGGTGACCTTGAAGGCTCTGCCGATTCCACCTACGATCTCCAGAGGACGCTCGTTCAGAATGTTCTCTCCGTCGATTGCTCCGGTGGTGTTCAGTCCTCTTTCTCTTATGTCACTCCCACCTCCGCCGTTTTCCAGGTGATCATTGGCGGCAGTAGTGGCGGCGGTTTCATCGGCGGTGGAGGAGCTGCAGCCGCCCCTGCTGGAGGAGATGCACCAGCTGCTGCAGAAGCCCCAGCTGAGAAGAAGGAAGAGGTGAAGGAGGAGAGTGATGACGACGACCTTGGCTTTTCACTTTTTGATTAA

Homology

[Close]

BLAST of CmoCh05G007380 vs. Swiss-Prot
Match: RLA32_ARATH (60S acidic ribosomal protein P3-2 OS=Arabidopsis thaliana GN=RPP3B PE=2 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 1.9e-32
Identity = 78/120 (65.00%), Postives = 88/120 (73.33%), Query Frame = 1


Query: 1   MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP 60
           MGVF+F+C+S GG+WTA Q+ GDLE SA STYDLQR LVQ  LS D SGGVQSSFS V+P
Sbjct: 1   MGVFSFVCKSKGGEWTAKQHEGDLEASASSTYDLQRKLVQTALSADSSGGVQSSFSLVSP 60

Query: 61  TSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGFSLF 120
           TSAVF V+IGG  GGGF  GGGAAA   GG   AAA    EKK+E  EE ++ D GF LF
Sbjct: 61  TSAVFVVVIGGGGGGGFAAGGGAAAGGGGGGEAAAATKEEEKKKEESEE-EEGDFGFDLF 119

[Close]

BLAST of CmoCh05G007380 vs. Swiss-Prot
Match: RLA31_ARATH (60S acidic ribosomal protein P3-1 OS=Arabidopsis thaliana GN=RPP3A PE=3 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 1.5e-29
Identity = 72/120 (60.00%), Postives = 88/120 (73.33%), Query Frame = 1


Query: 1   MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP 60
           MGVFTF+C++ GG W+A Q+ G+LE SA STY+LQR LVQ  LS D SGGVQSSFS V+P
Sbjct: 1   MGVFTFVCKNGGGAWSAKQHEGELESSASSTYELQRKLVQVSLSADSSGGVQSSFSLVSP 60

Query: 61  TSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGFSLF 120
           TSAVFQVI+GG  GGGF  GG A++    G+A AA +   +KKEE +EE  + D GF LF
Sbjct: 61  TSAVFQVIVGGGGGGGFSAGGAASSGGGAGEAAAAPKEDEKKKEESEEE--EGDFGFDLF 118

[Close]

BLAST of CmoCh05G007380 vs. Swiss-Prot
Match: RLA3_ORYSJ (60S acidic ribosomal protein P3 OS=Oryza sativa subsp. japonica GN=Os06g0701400 PE=3 SV=3)

HSP 1 Score: 128.6 bits (322), Expect = 4.5e-29
Identity = 79/123 (64.23%), Postives = 91/123 (73.98%), Query Frame = 1


Query: 1   MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP 60
           MGV+TF+CRSSG +WTA Q  G+LE SA + Y+LQR LV    + D + GVQSSFS V+P
Sbjct: 1   MGVYTFVCRSSGDEWTAKQLKGELEASAATPYELQRRLVAAASAADSAAGVQSSFSMVSP 60

Query: 61  TSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAP--AEKKEEVKEESDDDDLGFS 120
           +SAVFQVIIG   GG  IGGG AA A +GG   AAAEAP   EKKEE KEES +DDLGFS
Sbjct: 61  SSAVFQVIIGAVGGGAAIGGGAAAGAASGG---AAAEAPKAEEKKEEEKEES-EDDLGFS 119

Query: 121 LFD 122
           LFD
Sbjct: 121 LFD 119

[Close]

BLAST of CmoCh05G007380 vs. Swiss-Prot
Match: RLA3_MAIZE (60S acidic ribosomal protein P3 OS=Zea mays GN=RPP3A PE=1 SV=3)

HSP 1 Score: 127.5 bits (319), Expect = 1.0e-28
Identity = 72/123 (58.54%), Postives = 92/123 (74.80%), Query Frame = 1


Query: 1   MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP 60
           MGV+TF+CR++GG+WTA Q+SG++E SA + Y+LQR LV    + D   GVQSSFS VTP
Sbjct: 1   MGVYTFVCRNNGGEWTAKQHSGEIEASAATPYELQRRLVAAASAADSRYGVQSSFSMVTP 60

Query: 61  TSAVFQVIIGGSSGGGFI--GGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGFS 120
           +SAVFQVI+G   GG  +  GGGG  AA +GG   AAAEAP E+K+E ++E  DDD+GFS
Sbjct: 61  SSAVFQVIVGAVGGGAMMVSGGGGGGAAASGG---AAAEAPKEEKKEEEKEESDDDMGFS 120

Query: 121 LFD 122
           LFD
Sbjct: 121 LFD 120

[Close]

BLAST of CmoCh05G007380 vs. TrEMBL
Match: A0A0A0LJB2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G060400 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 1.4e-48
Identity = 105/121 (86.78%), Postives = 113/121 (93.39%), Query Frame = 1


Query: 1   MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP 60
           MGVFTF+CRSSGGKWTANQYSGDLEGSADSTY+LQR LVQ+ LSVD SGGVQSSFS++TP
Sbjct: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60

Query: 61  TSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGFSLF 120
           +SAVFQVI+GG SGGGF  GGGAAAAPAGG APAAAEAPAEKKEEVKEESDD+DLG SLF
Sbjct: 61  SSAVFQVIVGGGSGGGFSAGGGAAAAPAGGAAPAAAEAPAEKKEEVKEESDDEDLGLSLF 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of CmoCh05G007380 vs. TrEMBL
Match: A0A059CSI3_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C02261 PE=3 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 4.8e-38
Identity = 91/121 (75.21%), Postives = 102/121 (84.30%), Query Frame = 1


Query: 1   MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP 60
           MGVFTF+CRSSG +WTA Q SGDLE  A ST++LQR LVQ+ ++ D SGGVQSSFS VTP
Sbjct: 1   MGVFTFVCRSSGDEWTAKQVSGDLEACAASTFELQRKLVQSAVAADSSGGVQSSFSLVTP 60

Query: 61  TSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGFSLF 120
           +SAVFQVIIGG  GGGFIGGG AAAAPAGG APAA  APAE+K+E KEES DDD+GFSLF
Sbjct: 61  SSAVFQVIIGGGGGGGFIGGGAAAAAPAGGAAPAAEAAPAEEKKEEKEES-DDDMGFSLF 120

Query: 121 D 122
           D
Sbjct: 121 D 120

[Close]

BLAST of CmoCh05G007380 vs. TrEMBL
Match: A5BBF0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010073 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 3.1e-37
Identity = 91/122 (74.59%), Postives = 101/122 (82.79%), Query Frame = 1


Query: 1   MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP 60
           MGVFTF+CRSSG +WTA Q +GDLE SA STYDLQR  VQ+ LS D SGGVQSSFSYVTP
Sbjct: 1   MGVFTFVCRSSGKEWTAKQMNGDLEESAASTYDLQRKCVQSALSADSSGGVQSSFSYVTP 60

Query: 61  TSAVFQVIIGGSSGGGFIGGGG-AAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGFSL 120
           +S VFQVI+GG  GGGF GGGG AAAAP+GG APAA   PAE+K+E KEES DDD+GFSL
Sbjct: 61  SSGVFQVIVGGGGGGGFFGGGGAAAAAPSGGGAPAADAPPAEEKKEEKEES-DDDMGFSL 120

Query: 121 FD 122
           FD
Sbjct: 121 FD 121

[Close]

BLAST of CmoCh05G007380 vs. TrEMBL
Match: W9SDZ4_9ROSA (60S acidic ribosomal protein P3-2 OS=Morus notabilis GN=L484_009210 PE=3 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 4.1e-37
Identity = 91/122 (74.59%), Postives = 103/122 (84.43%), Query Frame = 1


Query: 1   MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP 60
           MGVFTF+ RSSGG+WTA Q+ GDLE SA STYDLQR LVQ+ LS D SGGVQ++FS +TP
Sbjct: 1   MGVFTFVLRSSGGEWTAKQHKGDLEASAASTYDLQRKLVQSALSQDSSGGVQTAFSLITP 60

Query: 61  TSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEA-PAEKKEEVKEESDDDDLGFSL 120
           +SAVFQVI+GG  GGGFI GGGAAAAPAGG   AAAEA PAE+K+E KEES DDD+GFSL
Sbjct: 61  SSAVFQVIVGGGGGGGFIAGGGAAAAPAGGAGAAAAEAPPAEEKKEEKEES-DDDMGFSL 120

Query: 121 FD 122
           FD
Sbjct: 121 FD 121

[Close]

BLAST of CmoCh05G007380 vs. TrEMBL
Match: D7UBL2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0103g00220 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 5.3e-37
Identity = 91/122 (74.59%), Postives = 101/122 (82.79%), Query Frame = 1


Query: 1   MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP 60
           MGVFTF+CRSSG +WTA Q +GDLE SA STYDLQR  VQ+ LS D SGGVQSSFSYVTP
Sbjct: 1   MGVFTFVCRSSGKEWTAKQMNGDLEESAASTYDLQRRCVQSALSADSSGGVQSSFSYVTP 60

Query: 61  TSAVFQVIIGGSSGGGFIGGGG-AAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGFSL 120
           +SAV QVI+GG  GGGF GGGG AAAAP+GG APAA   PAE+K+E KEES DDD+GFSL
Sbjct: 61  SSAVIQVIVGGGGGGGFFGGGGAAAAAPSGGGAPAADAPPAEEKKEEKEES-DDDMGFSL 120

Query: 121 FD 122
           FD
Sbjct: 121 FD 121

[Close]

BLAST of CmoCh05G007380 vs. TAIR10
Match: AT5G57290.1 (AT5G57290.1 60S acidic ribosomal protein family)

HSP 1 Score: 139.8 bits (351), Expect = 1.1e-33
Identity = 78/120 (65.00%), Postives = 88/120 (73.33%), Query Frame = 1


Query: 1   MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP 60
           MGVF+F+C+S GG+WTA Q+ GDLE SA STYDLQR LVQ  LS D SGGVQSSFS V+P
Sbjct: 1   MGVFSFVCKSKGGEWTAKQHEGDLEASASSTYDLQRKLVQTALSADSSGGVQSSFSLVSP 60

Query: 61  TSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGFSLF 120
           TSAVF V+IGG  GGGF  GGGAAA   GG   AAA    EKK+E  EE ++ D GF LF
Sbjct: 61  TSAVFVVVIGGGGGGGFAAGGGAAAGGGGGGEAAAATKEEEKKKEESEE-EEGDFGFDLF 119

[Close]

BLAST of CmoCh05G007380 vs. TAIR10
Match: AT4G25890.1 (AT4G25890.1 60S acidic ribosomal protein family)

HSP 1 Score: 130.2 bits (326), Expect = 8.7e-31
Identity = 72/120 (60.00%), Postives = 88/120 (73.33%), Query Frame = 1


Query: 1   MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP 60
           MGVFTF+C++ GG W+A Q+ G+LE SA STY+LQR LVQ  LS D SGGVQSSFS V+P
Sbjct: 1   MGVFTFVCKNGGGAWSAKQHEGELESSASSTYELQRKLVQVSLSADSSGGVQSSFSLVSP 60

Query: 61  TSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGFSLF 120
           TSAVFQVI+GG  GGGF  GG A++    G+A AA +   +KKEE +EE  + D GF LF
Sbjct: 61  TSAVFQVIVGGGGGGGFSAGGAASSGGGAGEAAAAPKEDEKKKEESEEE--EGDFGFDLF 118

[Close]

BLAST of CmoCh05G007380 vs. NCBI nr
Match: gi|659069721|ref|XP_008451467.1| (PREDICTED: 60S acidic ribosomal protein P3-2 isoform X1 [Cucumis melo])

HSP 1 Score: 201.8 bits (512), Expect = 6.7e-49
Identity = 107/121 (88.43%), Postives = 114/121 (94.21%), Query Frame = 1


Query: 1   MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP 60
           MGVFTF+CRSSGGKWTANQYSGDLEGSADSTY+LQR LVQ+ LSVD SGGVQSSFS++TP
Sbjct: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60

Query: 61  TSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGFSLF 120
           TSAVFQVI+GG  GGGFI GGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDD+DLG SLF
Sbjct: 61  TSAVFQVIVGGGGGGGFI-GGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDEDLGLSLF 120

Query: 121 D 122
           D
Sbjct: 121 D 120

[Close]

BLAST of CmoCh05G007380 vs. NCBI nr
Match: gi|449461181|ref|XP_004148320.1| (PREDICTED: 60S acidic ribosomal protein P3-2 [Cucumis sativus])

HSP 1 Score: 200.3 bits (508), Expect = 1.9e-48
Identity = 105/121 (86.78%), Postives = 113/121 (93.39%), Query Frame = 1


Query: 1   MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP 60
           MGVFTF+CRSSGGKWTANQYSGDLEGSADSTY+LQR LVQ+ LSVD SGGVQSSFS++TP
Sbjct: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60

Query: 61  TSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGFSLF 120
           +SAVFQVI+GG SGGGF  GGGAAAAPAGG APAAAEAPAEKKEEVKEESDD+DLG SLF
Sbjct: 61  SSAVFQVIVGGGSGGGFSAGGGAAAAPAGGAAPAAAEAPAEKKEEVKEESDDEDLGLSLF 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]

BLAST of CmoCh05G007380 vs. NCBI nr
Match: gi|702299035|ref|XP_010048598.1| (PREDICTED: 60S acidic ribosomal protein P3-like [Eucalyptus grandis])

HSP 1 Score: 165.2 bits (417), Expect = 6.9e-38
Identity = 91/121 (75.21%), Postives = 102/121 (84.30%), Query Frame = 1


Query: 1   MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP 60
           MGVFTF+CRSSG +WTA Q SGDLE  A ST++LQR LVQ+ ++ D SGGVQSSFS VTP
Sbjct: 1   MGVFTFVCRSSGDEWTAKQVSGDLEACAASTFELQRKLVQSAVAADSSGGVQSSFSLVTP 60

Query: 61  TSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGFSLF 120
           +SAVFQVIIGG  GGGFIGGG AAAAPAGG APAA  APAE+K+E KEES DDD+GFSLF
Sbjct: 61  SSAVFQVIIGGGGGGGFIGGGAAAAAPAGGAAPAAEAAPAEEKKEEKEES-DDDMGFSLF 120

Query: 121 D 122
           D
Sbjct: 121 D 120

[Close]

BLAST of CmoCh05G007380 vs. NCBI nr
Match: gi|147790496|emb|CAN65458.1| (hypothetical protein VITISV_010073 [Vitis vinifera])

HSP 1 Score: 162.5 bits (410), Expect = 4.5e-37
Identity = 91/122 (74.59%), Postives = 101/122 (82.79%), Query Frame = 1


Query: 1   MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP 60
           MGVFTF+CRSSG +WTA Q +GDLE SA STYDLQR  VQ+ LS D SGGVQSSFSYVTP
Sbjct: 1   MGVFTFVCRSSGKEWTAKQMNGDLEESAASTYDLQRKCVQSALSADSSGGVQSSFSYVTP 60

Query: 61  TSAVFQVIIGGSSGGGFIGGGG-AAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGFSL 120
           +S VFQVI+GG  GGGF GGGG AAAAP+GG APAA   PAE+K+E KEES DDD+GFSL
Sbjct: 61  SSGVFQVIVGGGGGGGFFGGGGAAAAAPSGGGAPAADAPPAEEKKEEKEES-DDDMGFSL 120

Query: 121 FD 122
           FD
Sbjct: 121 FD 121

[Close]

BLAST of CmoCh05G007380 vs. NCBI nr
Match: gi|703153600|ref|XP_010110722.1| (60S acidic ribosomal protein P3-2 [Morus notabilis])

HSP 1 Score: 162.2 bits (409), Expect = 5.9e-37
Identity = 91/122 (74.59%), Postives = 103/122 (84.43%), Query Frame = 1


Query: 1   MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP 60
           MGVFTF+ RSSGG+WTA Q+ GDLE SA STYDLQR LVQ+ LS D SGGVQ++FS +TP
Sbjct: 1   MGVFTFVLRSSGGEWTAKQHKGDLEASAASTYDLQRKLVQSALSQDSSGGVQTAFSLITP 60

Query: 61  TSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEA-PAEKKEEVKEESDDDDLGFSL 120
           +SAVFQVI+GG  GGGFI GGGAAAAPAGG   AAAEA PAE+K+E KEES DDD+GFSL
Sbjct: 61  SSAVFQVIVGGGGGGGFIAGGGAAAAPAGGAGAAAAEAPPAEEKKEEKEES-DDDMGFSL 120

Query: 121 FD 122
           FD
Sbjct: 121 FD 121

The following BLAST results are available for this feature:

BLAST of CmoCh05G007380 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RLA32_ARATH	1.9e-32	65.00	60S acidic ribosomal protein P3-2 OS=Arabidopsis thaliana GN=RPP3B PE=2 SV=1	[more]
RLA31_ARATH	1.5e-29	60.00	60S acidic ribosomal protein P3-1 OS=Arabidopsis thaliana GN=RPP3A PE=3 SV=1	[more]
RLA3_ORYSJ	4.5e-29	64.23	60S acidic ribosomal protein P3 OS=Oryza sativa subsp. japonica GN=Os06g0701400 ...	[more]
RLA3_MAIZE	1.0e-28	58.54	60S acidic ribosomal protein P3 OS=Zea mays GN=RPP3A PE=1 SV=3	[more]

BLAST of CmoCh05G007380 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJB2_CUCSA	1.4e-48	86.78	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G060400 PE=4 SV=1	[more]
A0A059CSI3_EUCGR	4.8e-38	75.21	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C02261 PE=3 SV=1	[more]
A5BBF0_VITVI	3.1e-37	74.59	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010073 PE=4 SV=1	[more]
W9SDZ4_9ROSA	4.1e-37	74.59	60S acidic ribosomal protein P3-2 OS=Morus notabilis GN=L484_009210 PE=3 SV=1	[more]
D7UBL2_VITVI	5.3e-37	74.59	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0103g00220 PE=4 SV=...	[more]

BLAST of CmoCh05G007380 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G57290.1	1.1e-33	65.00	60S acidic ribosomal protein family	[more]
AT4G25890.1	8.7e-31	60.00	60S acidic ribosomal protein family	[more]

BLAST of CmoCh05G007380 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659069721\|ref\|XP_008451467.1\|	6.7e-49	88.43	PREDICTED: 60S acidic ribosomal protein P3-2 isoform X1 [Cucumis melo]	[more]
gi\|449461181\|ref\|XP_004148320.1\|	1.9e-48	86.78	PREDICTED: 60S acidic ribosomal protein P3-2 [Cucumis sativus]	[more]
gi\|702299035\|ref\|XP_010048598.1\|	6.9e-38	75.21	PREDICTED: 60S acidic ribosomal protein P3-like [Eucalyptus grandis]	[more]
gi\|147790496\|emb\|CAN65458.1\|	4.5e-37	74.59	hypothetical protein VITISV_010073 [Vitis vinifera]	[more]
gi\|703153600\|ref\|XP_010110722.1\|	5.9e-37	74.59	60S acidic ribosomal protein P3-2 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006414	translational elongation
biological_process	GO:0008150	biological_process
cellular_component	GO:0022626	cytosolic ribosome
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh05G007380.1	CmoCh05G007380.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF00428	Ribosomal_60s	coord: 69..120 score: 5.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh05G007380	Cucsa.089140	Cucumber (Gy14) v1	cgycmoB0180
CmoCh05G007380	CmaCh12G008990	Cucurbita maxima (Rimu)	cmacmoB191
CmoCh05G007380	CmaCh05G007020	Cucurbita maxima (Rimu)	cmacmoB786
CmoCh05G007380	Cla022802	Watermelon (97103) v1	cmowmB764
CmoCh05G007380	Csa2G060400	Cucumber (Chinese Long) v2	cmocuB779
CmoCh05G007380	MELO3C003999	Melon (DHL92) v3.5.1	cmomeB725
CmoCh05G007380	ClCG11G011930	Watermelon (Charleston Gray)	cmowcgB696
CmoCh05G007380	CSPI02G06240	Wild cucumber (PI 183967)	cmocpiB784
CmoCh05G007380	Lsi11G007760	Bottle gourd (USVL1VR-Ls)	cmolsiB703
CmoCh05G007380	Cp4.1LG11g06430	Cucurbita pepo (Zucchini)	cmocpeB724
CmoCh05G007380	Cp4.1LG07g07410	Cucurbita pepo (Zucchini)	cmocpeB743
CmoCh05G007380	MELO3C003999.2	Melon (DHL92) v3.6.1	cmomedB822
CmoCh05G007380	CsaV3_2G008580	Cucumber (Chinese Long) v3	cmocucB0920
CmoCh05G007380	Cla97C11G217890	Watermelon (97103) v2	cmowmbB784
CmoCh05G007380	Bhi06G001097	Wax gourd	cmowgoB0927
CmoCh05G007380	CsGy2G006400	Cucumber (Gy14) v2	cgybcmoB240
CmoCh05G007380	Carg24207	Silver-seed gourd	carcmoB1334
CmoCh05G007380	Carg23923	Silver-seed gourd	carcmoB0849

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh05G007380	CmoCh12G009060	Cucurbita moschata (Rifu)	cmocmoB149

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh05G007380	Melon (DHL92) v3.6.1	cmomedB807
CmoCh05G007380	Silver-seed gourd	carcmoB0815
CmoCh05G007380	Silver-seed gourd	carcmoB1066
CmoCh05G007380	Cucumber (Chinese Long) v3	cmocucB0912
CmoCh05G007380	Watermelon (97103) v2	cmowmbB795
CmoCh05G007380	Wax gourd	cmowgoB0969
CmoCh05G007380	Cucurbita moschata (Rifu)	cmocmoB076
CmoCh05G007380	Cucurbita moschata (Rifu)	cmocmoB128
CmoCh05G007380	Cucumber (Gy14) v1	cgycmoB0144
CmoCh05G007380	Cucurbita maxima (Rimu)	cmacmoB096
CmoCh05G007380	Cucurbita maxima (Rimu)	cmacmoB160
CmoCh05G007380	Wild cucumber (PI 183967)	cmocpiB779
CmoCh05G007380	Cucumber (Chinese Long) v2	cmocuB772
CmoCh05G007380	Melon (DHL92) v3.5.1	cmomeB711
CmoCh05G007380	Watermelon (Charleston Gray)	cmowcgB709
CmoCh05G007380	Watermelon (97103) v1	cmowmB766
CmoCh05G007380	Cucurbita pepo (Zucchini)	cmocpeB716
CmoCh05G007380	Cucurbita pepo (Zucchini)	cmocpeB720
CmoCh05G007380	Cucurbita pepo (Zucchini)	cmocpeB729
CmoCh05G007380	Cucurbita pepo (Zucchini)	cmocpeB736
CmoCh05G007380	Bottle gourd (USVL1VR-Ls)	cmolsiB722
CmoCh05G007380	Cucumber (Gy14) v2	cgybcmoB126