Carg23923 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg23923
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	60S acidic ribosomal protein P3
Location	Cucurbita_argyrosperma_scaffold_173 : 159550 .. 161446 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGCCAAACCCTCGTTTTCCTCTCTCGCTAGGGTTTCGTCTCTCGACATAAAAACCAAACACAATCCACTGAAGAGCCGTCCACTCCAACGCTCTCTTTGTTCTTCTTCGTAATTCGCTTCAAGCAGAATCCCAGTTCGAAGATCAAACAATGGGAGTTTTCACCTTCATCTGTCGGAGCTCCGGTGGCAAGTGGACTGCCAATCAGTATTCGGGTGACCTTGAAGGCTCTGCCGATTCCACCTACGATCTCCAGAGGACGCTCGTTCAGAATGTTCTCTCCGTCGATTGCTCCGGTGGTGTTCAGTCCTCTTTCTCTTATGTCACTCCCACCTCCGCCGTTTTCCAGGTATCCATTGTTTTCTCCTCTATTCCAGTTTGTCTTGTGGATTCTTCGAATACTTCTGATTTTATTATTCGTTGTTCTCGATCTAATGTTCAAAAAAATGCTCCCCTTCTAAATGTAATCAATGTTTATTTGATTGTTTAGTCTGGTTACTAATGTTTTTGTCAATATGAATAGTGATCTTTTACCTTTCCTGTGCAATGAGGGTCGATCCTTTTTTTGGTCTATTTGATCTATAGGTTGGCGTTTAACAATTGCGATTATGGGTTTATGGGTACATGATTGATTAAGCAACTATTAATTGAGGGAATTTTCCAAATATATAGGTTTATAATGAACTAAAGCAATGTTGGTAATTATATTTTTAGTATGTTCATTGGTGAGTTCCTTGATTGGTATAACTTATCTGCATTCTCTCATTGAATTTTACATTTTCTGGATAAACATGGATTTATAAAAATATATATTTGTGTAATTCCTTGTTAGAGGTAGTCTGAATTTGTAGAGGTATTTGGAAGAAGTTGATTTGAAAGTATTTATGATTTATGATATCTCTTCAATGTCTCAATTTGCTTCCTCCCTGCTTGCCTGTTGTTACCCGTTGTGCATGCCTTGTTTAAACATTAGTATTTCAGGTGATCATTGGCGGCAGTAGTGGTGGCGGTTTCATCGGCGGTGGAGGAGCTGCAGCCGCCCCTGCTGGAGGAGATGCACCAGCTGCTGCAGAAGCCCCAGCTGAGAAGAAGGAAGAGGTGAAGGAGGAGAGTGATGACGACGACCTTGGCTTTTCACTTTTTGATTAATTGGTATAATTACTCGTTATTGTTTATCAAACTCAGAATCTTTAGCACTCAACTTTTATATTCAGCAAATTTTGGCTATGCATTTAGTTGAATTTTGCAAGTTCAATTGCTGTTCTTGTTAAGGACGTAAAATTTTGTTACTGACCTTTGTCAAATGGTTGGGGTCTTCTTTTGGGCATTGTTTTTCAAAAGGAATACCAATTTGGTGTGGTTGGTTTTAGCACATCTATTATTTGACTTGAATGGTGCCTTTTCAAGAATAGGTTGAGGTTTTAAAATTGTTTTAGGGTTTTAGAGTTCATACTATGATAAGATATATTACCCTTGTTTATAGATTAATATCCAAACTCGAGTAATATTAGGAACTCGAGTAAACCATAAGCAAATTATCTACTTTTCTATTATGTCCATTTAGAATTCTATCGACATGTAGCTCGTGACTTTGAAAATAGAGATATGAACAACATACCTCTACAATTGTATGATATTGTTTAGTTTGAGTATAAACTCTCTTGTTATGCCAAAAAATCTTGTATTAATGGAGATAGTGTACCTTACATGTCAATGATCTCCTTAGTTAGCCACCGAATGATTTCAACAATCATTAACATCATGAATACATACCTATTTTTATGATTTAGCCTTTTGGTTCAGCATTAATTATGGATTCATTTTAATTTGGGATCATCTAATTTCTGGATCTTTAGAGCTTGAGTTTGATAGCATTTTGATTGAACTCAACTTTTGGT

mRNA sequence

AAGCCAAACCCTCGTTTTCCTCTCTCGCTAGGGTTTCGTCTCTCGACATAAAAACCAAACACAATCCACTGAAGAGCCGTCCACTCCAACGCTCTCTTTGTTCTTCTTCGTAATTCGCTTCAAGCAGAATCCCAGTTCGAAGATCAAACAATGGGAGTTTTCACCTTCATCTGTCGGAGCTCCGGTGGCAAGTGGACTGCCAATCAGTATTCGGGTGACCTTGAAGGCTCTGCCGATTCCACCTACGATCTCCAGAGGACGCTCGTTCAGAATGTTCTCTCCGTCGATTGCTCCGGTGGTGTTCAGTCCTCTTTCTCTTATGTCACTCCCACCTCCGCCGTTTTCCAGGTGATCATTGGCGGCAGTAGTGGTGGCGGTTTCATCGGCGGTGGAGGAGCTGCAGCCGCCCCTGCTGGAGGAGATGCACCAGCTGCTGCAGAAGCCCCAGCTGAGAAGAAGGAAGAGGTGAAGGAGGAGAGTGATGACGACGACCTTGGCTTTTCACTTTTTGATTAATTGGTATAATTACTCGTTATTGTTTATCAAACTCAGAATCTTTAGCACTCAACTTTTATATTCAGCAAATTTTGGCTATGCATTTAGTTGAATTTTGCAAGTTCAATTGCTGTTCTTGTTAAGGACGTAAAATTTTGTTACTGACCTTTGTCAAATGGTTGGGGTCTTCTTTTGGGCATTGTTTTTCAAAAGGAATACCAATTTGGTGTGGTTGGTTTTAGCACATCTATTATTTGACTTGAATGGTGCCTTTTCAAGAATAGGTTGAGGTTTTAAAATTGTTTTAGGGTTTTAGAGTTCATACTATGATAAGATATATTACCCTTGTTTATAGATTAATATCCAAACTCGAGTAATATTAGGAACTCGAGTAAACCATAAGCAAATTATCTACTTTTCTATTATGTCCATTTAGAATTCTATCGACATGTAGCTCGTGACTTTGAAAATAGAGATATGAACAACATACCTCTACAATTGTATGATATTGTTTAGTTTGAGTATAAACTCTCTTGTTATGCCAAAAAATCTTGTATTAATGGAGATAGTGTACCTTACATGTCAATGATCTCCTTAGTTAGCCACCGAATGATTTCAACAATCATTAACATCATGAATACATACCTATTTTTATGATTTAGCCTTTTGGTTCAGCATTAATTATGGATTCATTTTAATTTGGGATCATCTAATTTCTGGATCTTTAGAGCTTGAGTTTGATAGCATTTTGATTGAACTCAACTTTTGGT

Coding sequence (CDS)

ATGGGAGTTTTCACCTTCATCTGTCGGAGCTCCGGTGGCAAGTGGACTGCCAATCAGTATTCGGGTGACCTTGAAGGCTCTGCCGATTCCACCTACGATCTCCAGAGGACGCTCGTTCAGAATGTTCTCTCCGTCGATTGCTCCGGTGGTGTTCAGTCCTCTTTCTCTTATGTCACTCCCACCTCCGCCGTTTTCCAGGTGATCATTGGCGGCAGTAGTGGTGGCGGTTTCATCGGCGGTGGAGGAGCTGCAGCCGCCCCTGCTGGAGGAGATGCACCAGCTGCTGCAGAAGCCCCAGCTGAGAAGAAGGAAGAGGTGAAGGAGGAGAGTGATGACGACGACCTTGGCTTTTCACTTTTTGATTAA

Protein sequence

MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTPTSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGFSLFD

Homology

[Close]

BLAST of Carg23923 vs. NCBI nr
Match: XP_022929782.1 (60S acidic ribosomal protein P3-2-like [Cucurbita moschata] >XP_022997309.1 60S acidic ribosomal protein P3-2-like [Cucurbita maxima] >XP_023521367.1 60S acidic ribosomal protein P3-2-like [Cucurbita pepo subsp. pepo] >XP_023545674.1 60S acidic ribosomal protein P3-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 136.7 bits (343), Expect = 5.1e-29
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1  MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP 60
          MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP
Sbjct: 1  MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP 60

Query: 61 TSAVFQ 67
          TSAVFQ
Sbjct: 61 TSAVFQ 66

[Close]

BLAST of Carg23923 vs. NCBI nr
Match: XP_008451467.1 (PREDICTED: 60S acidic ribosomal protein P3-2 [Cucumis melo])

HSP 1 Score: 123.2 bits (308), Expect = 5.9e-25
Identity = 58/66 (87.88%), Postives = 63/66 (95.45%), Query Frame = 0


Query: 1  MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP 60
          MGVFTF+CRSSGGKWTANQYSGDLEGSADSTY+LQR LVQ+ LSVD SGGVQSSFS++TP
Sbjct: 1  MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60

Query: 61 TSAVFQ 67
          TSAVFQ
Sbjct: 61 TSAVFQ 66

[Close]

BLAST of Carg23923 vs. NCBI nr
Match: XP_004148320.1 (PREDICTED: 60S acidic ribosomal protein P3-2 [Cucumis sativus] >KGN61159.1 hypothetical protein Csa_2G060400 [Cucumis sativus])

HSP 1 Score: 114.4 bits (285), Expect = 2.7e-22
Identity = 53/62 (85.48%), Postives = 59/62 (95.16%), Query Frame = 0


Query: 1  MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP 60
          MGVFTF+CRSSGGKWTANQYSGDLEGSADSTY+LQR LVQ+ LSVD SGGVQSSFS++TP
Sbjct: 1  MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60

Query: 61 TS 63
          +S
Sbjct: 61 SS 62

[Close]

BLAST of Carg23923 vs. NCBI nr
Match: XP_023537756.1 (60S acidic ribosomal protein P3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 113.2 bits (282), Expect = 6.1e-22
Identity = 54/65 (83.08%), Postives = 59/65 (90.77%), Query Frame = 0


Query: 1  MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP 60
          MGVFTF+CR SGG+WTANQYSGDLEGSA STYDLQR LV + LSVD SGGVQSSFSYV+P
Sbjct: 1  MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGGVQSSFSYVSP 60

Query: 61 TSAVF 66
          +SAVF
Sbjct: 61 SSAVF 65

[Close]

BLAST of Carg23923 vs. NCBI nr
Match: XP_022153281.1 (60S acidic ribosomal protein P3-2 [Momordica charantia])

HSP 1 Score: 112.5 bits (280), Expect = 1.0e-21
Identity = 53/66 (80.30%), Postives = 59/66 (89.39%), Query Frame = 0


Query: 1  MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP 60
          MGVFTF+CRSSG +WTA QYSGDLEGSA STY+LQR LVQ  L+VD SGGVQSSFSY++P
Sbjct: 1  MGVFTFVCRSSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISP 60

Query: 61 TSAVFQ 67
          TSAVFQ
Sbjct: 61 TSAVFQ 66

[Close]

BLAST of Carg23923 vs. TAIR10
Match: AT4G25890.1 (60S acidic ribosomal protein family)

HSP 1 Score: 97.1 bits (240), Expect = 8.2e-21
Identity = 46/66 (69.70%), Postives = 54/66 (81.82%), Query Frame = 0


Query: 1  MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP 60
          MGVFTF+C++ GG W+A Q+ G+LE SA STY+LQR LVQ  LS D SGGVQSSFS V+P
Sbjct: 1  MGVFTFVCKNGGGAWSAKQHEGELESSASSTYELQRKLVQVSLSADSSGGVQSSFSLVSP 60

Query: 61 TSAVFQ 67
          TSAVFQ
Sbjct: 61 TSAVFQ 66

[Close]

BLAST of Carg23923 vs. TAIR10
Match: AT5G57290.1 (60S acidic ribosomal protein family)

HSP 1 Score: 95.1 bits (235), Expect = 3.1e-20
Identity = 44/61 (72.13%), Postives = 50/61 (81.97%), Query Frame = 0


Query: 1  MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP 60
          MGVF+F+C+S GG+WTA Q+ GDLE SA STYDLQR LVQ  LS D SGGVQSSFS V+P
Sbjct: 1  MGVFSFVCKSKGGEWTAKQHEGDLEASASSTYDLQRKLVQTALSADSSGGVQSSFSLVSP 60

Query: 61 T 62
          T
Sbjct: 61 T 61

[Close]

BLAST of Carg23923 vs. Swiss-Prot
Match: sp|Q9SVZ6|RLA31_ARATH (60S acidic ribosomal protein P3-1 OS=Arabidopsis thaliana OX=3702 GN=RPP3A PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.5e-19
Identity = 46/66 (69.70%), Postives = 54/66 (81.82%), Query Frame = 0


Query: 1  MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP 60
          MGVFTF+C++ GG W+A Q+ G+LE SA STY+LQR LVQ  LS D SGGVQSSFS V+P
Sbjct: 1  MGVFTFVCKNGGGAWSAKQHEGELESSASSTYELQRKLVQVSLSADSSGGVQSSFSLVSP 60

Query: 61 TSAVFQ 67
          TSAVFQ
Sbjct: 61 TSAVFQ 66

[Close]

BLAST of Carg23923 vs. Swiss-Prot
Match: sp|Q9LVC9|RLA32_ARATH (60S acidic ribosomal protein P3-2 OS=Arabidopsis thaliana OX=3702 GN=RPP3B PE=2 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 5.6e-19
Identity = 44/61 (72.13%), Postives = 50/61 (81.97%), Query Frame = 0


Query: 1  MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP 60
          MGVF+F+C+S GG+WTA Q+ GDLE SA STYDLQR LVQ  LS D SGGVQSSFS V+P
Sbjct: 1  MGVFSFVCKSKGGEWTAKQHEGDLEASASSTYDLQRKLVQTALSADSSGGVQSSFSLVSP 60

Query: 61 T 62
          T
Sbjct: 61 T 61

[Close]

BLAST of Carg23923 vs. Swiss-Prot
Match: sp|O24413|RLA3_MAIZE (60S acidic ribosomal protein P3 OS=Zea mays OX=4577 GN=RPP3A PE=1 SV=3)

HSP 1 Score: 84.3 bits (207), Expect = 9.9e-16
Identity = 39/65 (60.00%), Postives = 51/65 (78.46%), Query Frame = 0


Query: 1  MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP 60
          MGV+TF+CR++GG+WTA Q+SG++E SA + Y+LQR LV    + D   GVQSSFS VTP
Sbjct: 1  MGVYTFVCRNNGGEWTAKQHSGEIEASAATPYELQRRLVAAASAADSRYGVQSSFSMVTP 60

Query: 61 TSAVF 66
          +SAVF
Sbjct: 61 SSAVF 65

[Close]

BLAST of Carg23923 vs. Swiss-Prot
Match: sp|P56724|RLA3_ORYSJ (60S acidic ribosomal protein P3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0701400 PE=3 SV=3)

HSP 1 Score: 55.8 bits (133), Expect = 3.8e-07
Identity = 24/38 (63.16%), Postives = 30/38 (78.95%), Query Frame = 0


Query: 1  MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTL 39
          MGV+TF+CRSSG +WTA Q  G+LE SA + Y+LQR L
Sbjct: 1  MGVYTFVCRSSGDEWTAKQLKGELEASAATPYELQRRL 38

[Close]

BLAST of Carg23923 vs. TrEMBL
Match: tr|A0A1S3BRK9|A0A1S3BRK9_CUCME (60S acidic ribosomal protein P3-2 OS=Cucumis melo OX=3656 GN=LOC103492742 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 3.9e-25
Identity = 58/66 (87.88%), Postives = 63/66 (95.45%), Query Frame = 0


Query: 1  MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP 60
          MGVFTF+CRSSGGKWTANQYSGDLEGSADSTY+LQR LVQ+ LSVD SGGVQSSFS++TP
Sbjct: 1  MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60

Query: 61 TSAVFQ 67
          TSAVFQ
Sbjct: 61 TSAVFQ 66

[Close]

BLAST of Carg23923 vs. TrEMBL
Match: tr|A0A0A0LJB2|A0A0A0LJB2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G060400 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.8e-22
Identity = 53/62 (85.48%), Postives = 59/62 (95.16%), Query Frame = 0


Query: 1  MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP 60
          MGVFTF+CRSSGGKWTANQYSGDLEGSADSTY+LQR LVQ+ LSVD SGGVQSSFS++TP
Sbjct: 1  MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60

Query: 61 TS 63
          +S
Sbjct: 61 SS 62

[Close]

BLAST of Carg23923 vs. TrEMBL
Match: tr|M4DVB0|M4DVB0_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.7e-20
Identity = 51/66 (77.27%), Postives = 56/66 (84.85%), Query Frame = 0


Query: 1  MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP 60
          MGVFTF+C+S GG+WTA Q+ GDLEGSA STYDLQR LVQ  LS D SGGVQSSFS V+P
Sbjct: 1  MGVFTFVCKSKGGEWTAKQHEGDLEGSASSTYDLQRKLVQTALSADSSGGVQSSFSLVSP 60

Query: 61 TSAVFQ 67
          TSAVFQ
Sbjct: 61 TSAVFQ 66

[Close]

BLAST of Carg23923 vs. TrEMBL
Match: tr|A0A2J6KKH3|A0A2J6KKH3_LACSA (Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_9X31040 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 4.9e-20
Identity = 51/66 (77.27%), Postives = 55/66 (83.33%), Query Frame = 0


Query: 1  MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP 60
          MGVFTF+C+SSGGKWTA Q  GDLEGSADSTY LQR+LVQ   S D SGG+QSSFSYV P
Sbjct: 1  MGVFTFVCKSSGGKWTAKQLKGDLEGSADSTYALQRSLVQAAYSCDSSGGIQSSFSYVLP 60

Query: 61 TSAVFQ 67
           SAVFQ
Sbjct: 61 DSAVFQ 66

[Close]

BLAST of Carg23923 vs. TrEMBL
Match: tr|Q6Y1D6|Q6Y1D6_LACSA (60S acidic ribosomal protein P3 (Fragment) OS=Lactuca sativa OX=4236 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 4.9e-20
Identity = 51/66 (77.27%), Postives = 55/66 (83.33%), Query Frame = 0


Query: 1  MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP 60
          MGVFTF+C+SSGGKWTA Q  GDLEGSADSTY LQR+LVQ   S D SGG+QSSFSYV P
Sbjct: 1  MGVFTFVCKSSGGKWTAKQLKGDLEGSADSTYALQRSLVQAAYSCDSSGGIQSSFSYVLP 60

Query: 61 TSAVFQ 67
           SAVFQ
Sbjct: 61 DSAVFQ 66

The following BLAST results are available for this feature:

BLAST of Carg23923 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022929782.1	5.1e-29	100.00	60S acidic ribosomal protein P3-2-like [Cucurbita moschata] >XP_022997309.1 60S ...	[more]
XP_008451467.1	5.9e-25	87.88	PREDICTED: 60S acidic ribosomal protein P3-2 [Cucumis melo]	[more]
XP_004148320.1	2.7e-22	85.48	PREDICTED: 60S acidic ribosomal protein P3-2 [Cucumis sativus] >KGN61159.1 hypot...	[more]
XP_023537756.1	6.1e-22	83.08	60S acidic ribosomal protein P3 [Cucurbita pepo subsp. pepo]	[more]
XP_022153281.1	1.0e-21	80.30	60S acidic ribosomal protein P3-2 [Momordica charantia]	[more]

BLAST of Carg23923 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G25890.1	8.2e-21	69.70	60S acidic ribosomal protein family	[more]
AT5G57290.1	3.1e-20	72.13	60S acidic ribosomal protein family	[more]

BLAST of Carg23923 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9SVZ6\|RLA31_ARATH	1.5e-19	69.70	60S acidic ribosomal protein P3-1 OS=Arabidopsis thaliana OX=3702 GN=RPP3A PE=3 ...	[more]
sp\|Q9LVC9\|RLA32_ARATH	5.6e-19	72.13	60S acidic ribosomal protein P3-2 OS=Arabidopsis thaliana OX=3702 GN=RPP3B PE=2 ...	[more]
sp\|O24413\|RLA3_MAIZE	9.9e-16	60.00	60S acidic ribosomal protein P3 OS=Zea mays OX=4577 GN=RPP3A PE=1 SV=3	[more]
sp\|P56724\|RLA3_ORYSJ	3.8e-07	63.16	60S acidic ribosomal protein P3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06...	[more]

BLAST of Carg23923 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BRK9\|A0A1S3BRK9_CUCME	3.9e-25	87.88	60S acidic ribosomal protein P3-2 OS=Cucumis melo OX=3656 GN=LOC103492742 PE=4 S...	[more]
tr\|A0A0A0LJB2\|A0A0A0LJB2_CUCSA	1.8e-22	85.48	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G060400 PE=4 SV=1	[more]
tr\|M4DVB0\|M4DVB0_BRARP	1.7e-20	77.27	Uncharacterized protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=3 SV=1	[more]
tr\|A0A2J6KKH3\|A0A2J6KKH3_LACSA	4.9e-20	77.27	Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_9X31040 PE=4 SV=1	[more]
tr\|Q6Y1D6\|Q6Y1D6_LACSA	4.9e-20	77.27	60S acidic ribosomal protein P3 (Fragment) OS=Lactuca sativa OX=4236 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg23923-RA	Carg23923-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF00428	Ribosomal_60s	coord: 72..120 e-value: 2.0E-11 score: 44.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 80..121
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 107..121

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg23923	Cla022802	Watermelon (97103) v1	carwmB0616
Carg23923	Csa2G060400	Cucumber (Chinese Long) v2	carcuB0643
Carg23923	MELO3C003999	Melon (DHL92) v3.5.1	carmeB0619
Carg23923	ClCG11G011930	Watermelon (Charleston Gray)	carwcgB0601
Carg23923	CSPI02G06240	Wild cucumber (PI 183967)	carcpiB0650
Carg23923	Cucsa.089140	Cucumber (Gy14) v1	carcgyB0692
Carg23923	CmaCh05G007020	Cucurbita maxima (Rimu)	carcmaB0872
Carg23923	CmaCh12G008990	Cucurbita maxima (Rimu)	carcmaB0870
Carg23923	CmoCh05G007380	Cucurbita moschata (Rifu)	carcmoB0849
Carg23923	CmoCh12G009060	Cucurbita moschata (Rifu)	carcmoB0847
Carg23923	Lsi11G007760	Bottle gourd (USVL1VR-Ls)	carlsiB563
Carg23923	Cp4.1LG11g06430	Cucurbita pepo (Zucchini)	carcpeB0879
Carg23923	Cp4.1LG07g07410	Cucurbita pepo (Zucchini)	carcpeB0880
Carg23923	CsGy2G006400	Cucumber (Gy14) v2	carcgybB0616
Carg23923	MELO3C003999.2	Melon (DHL92) v3.6.1	carmedB0626
Carg23923	CsaV3_2G008580	Cucumber (Chinese Long) v3	carcucB0651
Carg23923	Cla97C11G217890	Watermelon (97103) v2	carwmbB0644
Carg23923	Bhi06G001097	Wax gourd	carwgoB0735

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg23923	Carg24207	Silver-seed gourd	carcarB547

The following block(s) are covering this gene:

None