Carg24207 (gene) Silver-seed gourd
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AGAACGGCCGCTAGTCCTACGCTCTTATCTTTCTTCTTCGCAATTTGCTTCGATCGAAATTCACGTTCGAAGATCAAAAAATGGGAGTTTTCACCTTCGTTTGTCGGAAATCCGGTGGCGAGTGGACCGCCAATCAGTACTCAGGCGACCTTGAAGGTTCCGCCGCTTCAACCTATGATCTCCAGAGGAAGCTCGTTGCGTCTGCTCTCTCTGTCGATTCCTCCGGTGGCGTTCAGTCCTCATTCTCTTACGTTTCTCCCAGCTCCGCCGTTTTTCAGGTATTCTTTGTTTTCTCTGCTGGATATTCGCTGAAATAGGCGAAAACTTGTCGAGATTATCAATACATGTTCTGTTTTACCCGTTTGTCTAGTGGATTCTTCGAATGTATTTGATTTTATTGCTTGATTGTTCTCGATCTCACGCACTTACTCTTTAATGTTTGATTTTGTTAATCTCAGTATTTAACTGATTGTGTTTTTTTCCGTCGATTTGCAATGACGGGATTATCCTTACCTAGTTTTTTCCTTTTTGATGTGCGAGTGTTACTTTAAGTTCGATCTGTAGGGTAATGTTGTTCATTTGCGAATATGGATTTTAATTATATAATCCACTAATATGAATTTGTTCAACCAGCAGACCTCCGAATTCTTTCTCAATATATGAACACATTTTGCATTTTGAATCATTTCATTGCTGGCAATCGTATTTCTAGTATGTTCATTGCTGAGTTTCTTGATTGGTTACAAGTTATCTGCATTCACTCTAACCTTTACATTGAATTTTAACTTCTTTGAATAAGAAAATCTGATATTGTGTGATTCCTTGTTGGGAAGCTTTCTTGCAAAGTATTTAGAAAAGCTTGGTTTAAGTGACGGGTCCTTTGAATGAACTCTATTTATGATATCTCCTGAATTATCTGACTGCATTCCTCCCTGTTATTGCCTACCATGTACGCCTACCCTAAACCTTAATTTTTTCAGGTGATCATTGGTGGTGCTAGTGGCGGTGGTATCATTAGTGGTGGAGCAGCGGCAGCCGCCCCTGCTGGAGGAGCTGCACCAGCTGCAGAAGCCCCAGCTCCAGCGAAGGAGGAGGTGAAGGAAGAGAGTGATGATGATGACCTTGGCTTTTCACTTTTTGATTAATTGGTATAATTACTTGTTATTGTTTACCAATCTC AGAACGGCCGCTAGTCCTACGCTCTTATCTTTCTTCTTCGCAATTTGCTTCGATCGAAATTCACGTTCGAAGATCAAAAAATGGGAGTTTTCACCTTCGTTTGTCGGAAATCCGGTGGCGAGTGGACCGCCAATCAGTACTCAGGCGACCTTGAAGGTTCCGCCGCTTCAACCTATGATCTCCAGAGGAAGCTCGTTGCGTCTGCTCTCTCTGTCGATTCCTCCGGTGGCGTTCAGTCCTCATTCTCTTACGTTTCTCCCAGCTCCGCCGTTTTTCAGGTGATCATTGGTGGTGCTAGTGGCGGTGGTATCATTAGTGGTGGAGCAGCGGCAGCCGCCCCTGCTGGAGGAGCTGCACCAGCTGCAGAAGCCCCAGCTCCAGCGAAGGAGGAGGTGAAGGAAGAGAGTGATGATGATGACCTTGGCTTTTCACTTTTTGATTAATTGGTATAATTACTTGTTATTGTTTACCAATCTC ATGGGAGTTTTCACCTTCGTTTGTCGGAAATCCGGTGGCGAGTGGACCGCCAATCAGTACTCAGGCGACCTTGAAGGTTCCGCCGCTTCAACCTATGATCTCCAGAGGAAGCTCGTTGCGTCTGCTCTCTCTGTCGATTCCTCCGGTGGCGTTCAGTCCTCATTCTCTTACGTTTCTCCCAGCTCCGCCGTTTTTCAGGTGATCATTGGTGGTGCTAGTGGCGGTGGTATCATTAGTGGTGGAGCAGCGGCAGCCGCCCCTGCTGGAGGAGCTGCACCAGCTGCAGAAGCCCCAGCTCCAGCGAAGGAGGAGGTGAAGGAAGAGAGTGATGATGATGACCTTGGCTTTTCACTTTTTGATTAA MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGGVQSSFSYVSPSSAVFQVIIGGASGGGIISGGAAAAAPAGGAAPAAEAPAPAKEEVKEESDDDDLGFSLFD
BLAST of Carg24207 vs. NCBI nr
Match: XP_023537756.1 (60S acidic ribosomal protein P3 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 128.3 bits (321), Expect = 1.8e-26 Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0
BLAST of Carg24207 vs. NCBI nr
Match: XP_022937950.1 (60S acidic ribosomal protein P3 [Cucurbita moschata]) HSP 1 Score: 124.8 bits (312), Expect = 2.0e-25 Identity = 64/65 (98.46%), Postives = 64/65 (98.46%), Query Frame = 0
BLAST of Carg24207 vs. NCBI nr
Match: XP_022969611.1 (60S acidic ribosomal protein P3-like [Cucurbita maxima]) HSP 1 Score: 124.8 bits (312), Expect = 2.0e-25 Identity = 64/65 (98.46%), Postives = 64/65 (98.46%), Query Frame = 0
BLAST of Carg24207 vs. NCBI nr
Match: XP_008451467.1 (PREDICTED: 60S acidic ribosomal protein P3-2 [Cucumis melo]) HSP 1 Score: 114.8 bits (286), Expect = 2.1e-22 Identity = 56/65 (86.15%), Postives = 62/65 (95.38%), Query Frame = 0
BLAST of Carg24207 vs. NCBI nr
Match: XP_022153281.1 (60S acidic ribosomal protein P3-2 [Momordica charantia]) HSP 1 Score: 114.4 bits (285), Expect = 2.7e-22 Identity = 56/65 (86.15%), Postives = 61/65 (93.85%), Query Frame = 0
BLAST of Carg24207 vs. TAIR10
Match: AT5G57290.1 (60S acidic ribosomal protein family) HSP 1 Score: 97.1 bits (240), Expect = 8.1e-21 Identity = 47/61 (77.05%), Postives = 53/61 (86.89%), Query Frame = 0
BLAST of Carg24207 vs. TAIR10
Match: AT4G25890.1 (60S acidic ribosomal protein family) HSP 1 Score: 96.3 bits (238), Expect = 1.4e-20 Identity = 47/65 (72.31%), Postives = 55/65 (84.62%), Query Frame = 0
BLAST of Carg24207 vs. Swiss-Prot
Match: sp|Q9LVC9|RLA32_ARATH (60S acidic ribosomal protein P3-2 OS=Arabidopsis thaliana OX=3702 GN=RPP3B PE=2 SV=1) HSP 1 Score: 97.1 bits (240), Expect = 1.5e-19 Identity = 47/61 (77.05%), Postives = 53/61 (86.89%), Query Frame = 0
BLAST of Carg24207 vs. Swiss-Prot
Match: sp|Q9SVZ6|RLA31_ARATH (60S acidic ribosomal protein P3-1 OS=Arabidopsis thaliana OX=3702 GN=RPP3A PE=3 SV=1) HSP 1 Score: 96.3 bits (238), Expect = 2.5e-19 Identity = 47/65 (72.31%), Postives = 55/65 (84.62%), Query Frame = 0
BLAST of Carg24207 vs. Swiss-Prot
Match: sp|O24413|RLA3_MAIZE (60S acidic ribosomal protein P3 OS=Zea mays OX=4577 GN=RPP3A PE=1 SV=3) HSP 1 Score: 93.2 bits (230), Expect = 2.1e-18 Identity = 45/65 (69.23%), Postives = 56/65 (86.15%), Query Frame = 0
BLAST of Carg24207 vs. Swiss-Prot
Match: sp|P56724|RLA3_ORYSJ (60S acidic ribosomal protein P3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0701400 PE=3 SV=3) HSP 1 Score: 59.7 bits (143), Expect = 2.6e-08 Identity = 26/38 (68.42%), Postives = 31/38 (81.58%), Query Frame = 0
BLAST of Carg24207 vs. TrEMBL
Match: tr|A0A1S3BRK9|A0A1S3BRK9_CUCME (60S acidic ribosomal protein P3-2 OS=Cucumis melo OX=3656 GN=LOC103492742 PE=4 SV=1) HSP 1 Score: 114.8 bits (286), Expect = 1.4e-22 Identity = 56/65 (86.15%), Postives = 62/65 (95.38%), Query Frame = 0
BLAST of Carg24207 vs. TrEMBL
Match: tr|A0A0A0LJB2|A0A0A0LJB2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G060400 PE=4 SV=1) HSP 1 Score: 110.5 bits (275), Expect = 2.6e-21 Identity = 54/62 (87.10%), Postives = 59/62 (95.16%), Query Frame = 0
BLAST of Carg24207 vs. TrEMBL
Match: tr|M4DVB0|M4DVB0_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=3 SV=1) HSP 1 Score: 107.8 bits (268), Expect = 1.7e-20 Identity = 53/65 (81.54%), Postives = 58/65 (89.23%), Query Frame = 0
BLAST of Carg24207 vs. TrEMBL
Match: tr|M4DVA9|M4DVA9_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=4 SV=1) HSP 1 Score: 106.3 bits (264), Expect = 4.9e-20 Identity = 52/65 (80.00%), Postives = 58/65 (89.23%), Query Frame = 0
BLAST of Carg24207 vs. TrEMBL
Match: tr|A5BBF0|A5BBF0_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_010073 PE=4 SV=1) HSP 1 Score: 105.5 bits (262), Expect = 8.3e-20 Identity = 54/65 (83.08%), Postives = 56/65 (86.15%), Query Frame = 0
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
The following gene(s) are orthologous to this gene: The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene:
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