Carg24207 (gene) Silver-seed gourd

NameCarg24207
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Description60S acidic ribosomal protein P3-like protein
LocationCucurbita_argyrosperma_scaffold_225 : 238615 .. 239793 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGAACGGCCGCTAGTCCTACGCTCTTATCTTTCTTCTTCGCAATTTGCTTCGATCGAAATTCACGTTCGAAGATCAAAAAATGGGAGTTTTCACCTTCGTTTGTCGGAAATCCGGTGGCGAGTGGACCGCCAATCAGTACTCAGGCGACCTTGAAGGTTCCGCCGCTTCAACCTATGATCTCCAGAGGAAGCTCGTTGCGTCTGCTCTCTCTGTCGATTCCTCCGGTGGCGTTCAGTCCTCATTCTCTTACGTTTCTCCCAGCTCCGCCGTTTTTCAGGTATTCTTTGTTTTCTCTGCTGGATATTCGCTGAAATAGGCGAAAACTTGTCGAGATTATCAATACATGTTCTGTTTTACCCGTTTGTCTAGTGGATTCTTCGAATGTATTTGATTTTATTGCTTGATTGTTCTCGATCTCACGCACTTACTCTTTAATGTTTGATTTTGTTAATCTCAGTATTTAACTGATTGTGTTTTTTTCCGTCGATTTGCAATGACGGGATTATCCTTACCTAGTTTTTTCCTTTTTGATGTGCGAGTGTTACTTTAAGTTCGATCTGTAGGGTAATGTTGTTCATTTGCGAATATGGATTTTAATTATATAATCCACTAATATGAATTTGTTCAACCAGCAGACCTCCGAATTCTTTCTCAATATATGAACACATTTTGCATTTTGAATCATTTCATTGCTGGCAATCGTATTTCTAGTATGTTCATTGCTGAGTTTCTTGATTGGTTACAAGTTATCTGCATTCACTCTAACCTTTACATTGAATTTTAACTTCTTTGAATAAGAAAATCTGATATTGTGTGATTCCTTGTTGGGAAGCTTTCTTGCAAAGTATTTAGAAAAGCTTGGTTTAAGTGACGGGTCCTTTGAATGAACTCTATTTATGATATCTCCTGAATTATCTGACTGCATTCCTCCCTGTTATTGCCTACCATGTACGCCTACCCTAAACCTTAATTTTTTCAGGTGATCATTGGTGGTGCTAGTGGCGGTGGTATCATTAGTGGTGGAGCAGCGGCAGCCGCCCCTGCTGGAGGAGCTGCACCAGCTGCAGAAGCCCCAGCTCCAGCGAAGGAGGAGGTGAAGGAAGAGAGTGATGATGATGACCTTGGCTTTTCACTTTTTGATTAATTGGTATAATTACTTGTTATTGTTTACCAATCTC

mRNA sequence

AGAACGGCCGCTAGTCCTACGCTCTTATCTTTCTTCTTCGCAATTTGCTTCGATCGAAATTCACGTTCGAAGATCAAAAAATGGGAGTTTTCACCTTCGTTTGTCGGAAATCCGGTGGCGAGTGGACCGCCAATCAGTACTCAGGCGACCTTGAAGGTTCCGCCGCTTCAACCTATGATCTCCAGAGGAAGCTCGTTGCGTCTGCTCTCTCTGTCGATTCCTCCGGTGGCGTTCAGTCCTCATTCTCTTACGTTTCTCCCAGCTCCGCCGTTTTTCAGGTGATCATTGGTGGTGCTAGTGGCGGTGGTATCATTAGTGGTGGAGCAGCGGCAGCCGCCCCTGCTGGAGGAGCTGCACCAGCTGCAGAAGCCCCAGCTCCAGCGAAGGAGGAGGTGAAGGAAGAGAGTGATGATGATGACCTTGGCTTTTCACTTTTTGATTAATTGGTATAATTACTTGTTATTGTTTACCAATCTC

Coding sequence (CDS)

ATGGGAGTTTTCACCTTCGTTTGTCGGAAATCCGGTGGCGAGTGGACCGCCAATCAGTACTCAGGCGACCTTGAAGGTTCCGCCGCTTCAACCTATGATCTCCAGAGGAAGCTCGTTGCGTCTGCTCTCTCTGTCGATTCCTCCGGTGGCGTTCAGTCCTCATTCTCTTACGTTTCTCCCAGCTCCGCCGTTTTTCAGGTGATCATTGGTGGTGCTAGTGGCGGTGGTATCATTAGTGGTGGAGCAGCGGCAGCCGCCCCTGCTGGAGGAGCTGCACCAGCTGCAGAAGCCCCAGCTCCAGCGAAGGAGGAGGTGAAGGAAGAGAGTGATGATGATGACCTTGGCTTTTCACTTTTTGATTAA

Protein sequence

MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGGVQSSFSYVSPSSAVFQVIIGGASGGGIISGGAAAAAPAGGAAPAAEAPAPAKEEVKEESDDDDLGFSLFD
BLAST of Carg24207 vs. NCBI nr
Match: XP_023537756.1 (60S acidic ribosomal protein P3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 128.3 bits (321), Expect = 1.8e-26
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0

Query: 1  MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGGVQSSFSYVSP 60
          MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGGVQSSFSYVSP
Sbjct: 1  MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGGVQSSFSYVSP 60

Query: 61 SSAVF 66
          SSAVF
Sbjct: 61 SSAVF 65

BLAST of Carg24207 vs. NCBI nr
Match: XP_022937950.1 (60S acidic ribosomal protein P3 [Cucurbita moschata])

HSP 1 Score: 124.8 bits (312), Expect = 2.0e-25
Identity = 64/65 (98.46%), Postives = 64/65 (98.46%), Query Frame = 0

Query: 1  MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGGVQSSFSYVSP 60
          MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSG VQSSFSYVSP
Sbjct: 1  MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGCVQSSFSYVSP 60

Query: 61 SSAVF 66
          SSAVF
Sbjct: 61 SSAVF 65

BLAST of Carg24207 vs. NCBI nr
Match: XP_022969611.1 (60S acidic ribosomal protein P3-like [Cucurbita maxima])

HSP 1 Score: 124.8 bits (312), Expect = 2.0e-25
Identity = 64/65 (98.46%), Postives = 64/65 (98.46%), Query Frame = 0

Query: 1  MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGGVQSSFSYVSP 60
          MGVFTFVCRKSGGEWTANQYSG LEGSAASTYDLQRKLVASALSVDSSGGVQSSFSYVSP
Sbjct: 1  MGVFTFVCRKSGGEWTANQYSGVLEGSAASTYDLQRKLVASALSVDSSGGVQSSFSYVSP 60

Query: 61 SSAVF 66
          SSAVF
Sbjct: 61 SSAVF 65

BLAST of Carg24207 vs. NCBI nr
Match: XP_008451467.1 (PREDICTED: 60S acidic ribosomal protein P3-2 [Cucumis melo])

HSP 1 Score: 114.8 bits (286), Expect = 2.1e-22
Identity = 56/65 (86.15%), Postives = 62/65 (95.38%), Query Frame = 0

Query: 1  MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGGVQSSFSYVSP 60
          MGVFTFVCR SGG+WTANQYSGDLEGSA STY+LQRKLV SALSVDSSGGVQSSFS+++P
Sbjct: 1  MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60

Query: 61 SSAVF 66
          +SAVF
Sbjct: 61 TSAVF 65

BLAST of Carg24207 vs. NCBI nr
Match: XP_022153281.1 (60S acidic ribosomal protein P3-2 [Momordica charantia])

HSP 1 Score: 114.4 bits (285), Expect = 2.7e-22
Identity = 56/65 (86.15%), Postives = 61/65 (93.85%), Query Frame = 0

Query: 1  MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGGVQSSFSYVSP 60
          MGVFTFVCR SG EWTA QYSGDLEGSAASTY+LQRKLV +AL+VDSSGGVQSSFSY+SP
Sbjct: 1  MGVFTFVCRSSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISP 60

Query: 61 SSAVF 66
          +SAVF
Sbjct: 61 TSAVF 65

BLAST of Carg24207 vs. TAIR10
Match: AT5G57290.1 (60S acidic ribosomal protein family)

HSP 1 Score: 97.1 bits (240), Expect = 8.1e-21
Identity = 47/61 (77.05%), Postives = 53/61 (86.89%), Query Frame = 0

Query: 1  MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGGVQSSFSYVSP 60
          MGVF+FVC+  GGEWTA Q+ GDLE SA+STYDLQRKLV +ALS DSSGGVQSSFS VSP
Sbjct: 1  MGVFSFVCKSKGGEWTAKQHEGDLEASASSTYDLQRKLVQTALSADSSGGVQSSFSLVSP 60

Query: 61 S 62
          +
Sbjct: 61 T 61

BLAST of Carg24207 vs. TAIR10
Match: AT4G25890.1 (60S acidic ribosomal protein family)

HSP 1 Score: 96.3 bits (238), Expect = 1.4e-20
Identity = 47/65 (72.31%), Postives = 55/65 (84.62%), Query Frame = 0

Query: 1  MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGGVQSSFSYVSP 60
          MGVFTFVC+  GG W+A Q+ G+LE SA+STY+LQRKLV  +LS DSSGGVQSSFS VSP
Sbjct: 1  MGVFTFVCKNGGGAWSAKQHEGELESSASSTYELQRKLVQVSLSADSSGGVQSSFSLVSP 60

Query: 61 SSAVF 66
          +SAVF
Sbjct: 61 TSAVF 65

BLAST of Carg24207 vs. Swiss-Prot
Match: sp|Q9LVC9|RLA32_ARATH (60S acidic ribosomal protein P3-2 OS=Arabidopsis thaliana OX=3702 GN=RPP3B PE=2 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.5e-19
Identity = 47/61 (77.05%), Postives = 53/61 (86.89%), Query Frame = 0

Query: 1  MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGGVQSSFSYVSP 60
          MGVF+FVC+  GGEWTA Q+ GDLE SA+STYDLQRKLV +ALS DSSGGVQSSFS VSP
Sbjct: 1  MGVFSFVCKSKGGEWTAKQHEGDLEASASSTYDLQRKLVQTALSADSSGGVQSSFSLVSP 60

Query: 61 S 62
          +
Sbjct: 61 T 61

BLAST of Carg24207 vs. Swiss-Prot
Match: sp|Q9SVZ6|RLA31_ARATH (60S acidic ribosomal protein P3-1 OS=Arabidopsis thaliana OX=3702 GN=RPP3A PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.5e-19
Identity = 47/65 (72.31%), Postives = 55/65 (84.62%), Query Frame = 0

Query: 1  MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGGVQSSFSYVSP 60
          MGVFTFVC+  GG W+A Q+ G+LE SA+STY+LQRKLV  +LS DSSGGVQSSFS VSP
Sbjct: 1  MGVFTFVCKNGGGAWSAKQHEGELESSASSTYELQRKLVQVSLSADSSGGVQSSFSLVSP 60

Query: 61 SSAVF 66
          +SAVF
Sbjct: 61 TSAVF 65

BLAST of Carg24207 vs. Swiss-Prot
Match: sp|O24413|RLA3_MAIZE (60S acidic ribosomal protein P3 OS=Zea mays OX=4577 GN=RPP3A PE=1 SV=3)

HSP 1 Score: 93.2 bits (230), Expect = 2.1e-18
Identity = 45/65 (69.23%), Postives = 56/65 (86.15%), Query Frame = 0

Query: 1  MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGGVQSSFSYVSP 60
          MGV+TFVCR +GGEWTA Q+SG++E SAA+ Y+LQR+LVA+A + DS  GVQSSFS V+P
Sbjct: 1  MGVYTFVCRNNGGEWTAKQHSGEIEASAATPYELQRRLVAAASAADSRYGVQSSFSMVTP 60

Query: 61 SSAVF 66
          SSAVF
Sbjct: 61 SSAVF 65

BLAST of Carg24207 vs. Swiss-Prot
Match: sp|P56724|RLA3_ORYSJ (60S acidic ribosomal protein P3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0701400 PE=3 SV=3)

HSP 1 Score: 59.7 bits (143), Expect = 2.6e-08
Identity = 26/38 (68.42%), Postives = 31/38 (81.58%), Query Frame = 0

Query: 1  MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKL 39
          MGV+TFVCR SG EWTA Q  G+LE SAA+ Y+LQR+L
Sbjct: 1  MGVYTFVCRSSGDEWTAKQLKGELEASAATPYELQRRL 38

BLAST of Carg24207 vs. TrEMBL
Match: tr|A0A1S3BRK9|A0A1S3BRK9_CUCME (60S acidic ribosomal protein P3-2 OS=Cucumis melo OX=3656 GN=LOC103492742 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.4e-22
Identity = 56/65 (86.15%), Postives = 62/65 (95.38%), Query Frame = 0

Query: 1  MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGGVQSSFSYVSP 60
          MGVFTFVCR SGG+WTANQYSGDLEGSA STY+LQRKLV SALSVDSSGGVQSSFS+++P
Sbjct: 1  MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60

Query: 61 SSAVF 66
          +SAVF
Sbjct: 61 TSAVF 65

BLAST of Carg24207 vs. TrEMBL
Match: tr|A0A0A0LJB2|A0A0A0LJB2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G060400 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.6e-21
Identity = 54/62 (87.10%), Postives = 59/62 (95.16%), Query Frame = 0

Query: 1  MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGGVQSSFSYVSP 60
          MGVFTFVCR SGG+WTANQYSGDLEGSA STY+LQRKLV SALSVDSSGGVQSSFS+++P
Sbjct: 1  MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60

Query: 61 SS 63
          SS
Sbjct: 61 SS 62

BLAST of Carg24207 vs. TrEMBL
Match: tr|M4DVB0|M4DVB0_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=3 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.7e-20
Identity = 53/65 (81.54%), Postives = 58/65 (89.23%), Query Frame = 0

Query: 1  MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGGVQSSFSYVSP 60
          MGVFTFVC+  GGEWTA Q+ GDLEGSA+STYDLQRKLV +ALS DSSGGVQSSFS VSP
Sbjct: 1  MGVFTFVCKSKGGEWTAKQHEGDLEGSASSTYDLQRKLVQTALSADSSGGVQSSFSLVSP 60

Query: 61 SSAVF 66
          +SAVF
Sbjct: 61 TSAVF 65

BLAST of Carg24207 vs. TrEMBL
Match: tr|M4DVA9|M4DVA9_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 4.9e-20
Identity = 52/65 (80.00%), Postives = 58/65 (89.23%), Query Frame = 0

Query: 1  MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGGVQSSFSYVSP 60
          MGVFTFVC+  GGEWTA Q+ GDLEGSA+STYDLQRKLV +ALS DSSGGV+SSFS VSP
Sbjct: 1  MGVFTFVCKSKGGEWTAKQHEGDLEGSASSTYDLQRKLVQTALSADSSGGVRSSFSLVSP 60

Query: 61 SSAVF 66
          +SAVF
Sbjct: 61 TSAVF 65

BLAST of Carg24207 vs. TrEMBL
Match: tr|A5BBF0|A5BBF0_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_010073 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 8.3e-20
Identity = 54/65 (83.08%), Postives = 56/65 (86.15%), Query Frame = 0

Query: 1  MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGGVQSSFSYVSP 60
          MGVFTFVCR SG EWTA Q +GDLE SAASTYDLQRK V SALS DSSGGVQSSFSYV+P
Sbjct: 1  MGVFTFVCRSSGKEWTAKQMNGDLEESAASTYDLQRKCVQSALSADSSGGVQSSFSYVTP 60

Query: 61 SSAVF 66
          SS VF
Sbjct: 61 SSGVF 65

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023537756.11.8e-26100.0060S acidic ribosomal protein P3 [Cucurbita pepo subsp. pepo][more]
XP_022937950.12.0e-2598.4660S acidic ribosomal protein P3 [Cucurbita moschata][more]
XP_022969611.12.0e-2598.4660S acidic ribosomal protein P3-like [Cucurbita maxima][more]
XP_008451467.12.1e-2286.15PREDICTED: 60S acidic ribosomal protein P3-2 [Cucumis melo][more]
XP_022153281.12.7e-2286.1560S acidic ribosomal protein P3-2 [Momordica charantia][more]
Match NameE-valueIdentityDescription
AT5G57290.18.1e-2177.0560S acidic ribosomal protein family[more]
AT4G25890.11.4e-2072.3160S acidic ribosomal protein family[more]
Match NameE-valueIdentityDescription
sp|Q9LVC9|RLA32_ARATH1.5e-1977.0560S acidic ribosomal protein P3-2 OS=Arabidopsis thaliana OX=3702 GN=RPP3B PE=2 ... [more]
sp|Q9SVZ6|RLA31_ARATH2.5e-1972.3160S acidic ribosomal protein P3-1 OS=Arabidopsis thaliana OX=3702 GN=RPP3A PE=3 ... [more]
sp|O24413|RLA3_MAIZE2.1e-1869.2360S acidic ribosomal protein P3 OS=Zea mays OX=4577 GN=RPP3A PE=1 SV=3[more]
sp|P56724|RLA3_ORYSJ2.6e-0868.4260S acidic ribosomal protein P3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06... [more]
Match NameE-valueIdentityDescription
tr|A0A1S3BRK9|A0A1S3BRK9_CUCME1.4e-2286.1560S acidic ribosomal protein P3-2 OS=Cucumis melo OX=3656 GN=LOC103492742 PE=4 S... [more]
tr|A0A0A0LJB2|A0A0A0LJB2_CUCSA2.6e-2187.10Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G060400 PE=4 SV=1[more]
tr|M4DVB0|M4DVB0_BRARP1.7e-2081.54Uncharacterized protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=3 SV=1[more]
tr|M4DVA9|M4DVA9_BRARP4.9e-2080.00Uncharacterized protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=4 SV=1[more]
tr|A5BBF0|A5BBF0_VITVI8.3e-2083.08Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_010073 PE=4 SV=1[more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg24207-RACarg24207-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF00428Ribosomal_60scoord: 70..119
e-value: 4.7E-11
score: 43.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 106..120
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 82..120

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg24207Carg23923Silver-seed gourdcarcarB547