CmoCh04G029420 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G029420
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	MYB transcription factor
Location	Cmo_Chr04 : 20839031 .. 20840133 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAAGAAGAAGAAGATATAAAAATGGATGCAGAAGAAAAAGAATGGAGGAAGGGGCCATGGACTCCTGAGGAAGACAAGTTGTTGTCTGAATACGTGAAAGTGCATGGCGAAGGAAGATGGACTTCTGTTGCCACTGGTTCACGTAAAAACATATTCTCTTCCCTTTTTTTTTTCCCTCTAAACTGGAAGATTAGAGTTAAAAGACATCAATCTTATTCAGGTTTGAATAGAACGGGAAAAAGTTGCAGATTGAGATGGGTGAATTATCTTAGACCGGGTCTTAAGAGAGGCCATCTCACTCCTCTTGAGGAAGGCATTATCATAGAACTTCATGCTCTTTGGGGTAACAAGTAAGTAATTATTCTATAACAACTCAAACCCACCGCTAGCAGATATTGAGCTTTTTTAAACTCCTTCTTTGGGCTTTTCCTTTCGGACTTCCCATCAAGGTTTTTAAAACGCATTTGTTGGGAGAAGTTTCCACATCTTTATAAAAAATGTTTCGTTCTCCTCTCCAACTGATGTGAGATCTCATAATCTACCCACCTTCGAAGCCCGACGTCAAGATCTCACATATTCCTCTCTCCACATTTTTTTTACCCATCTCTCTCTTAACCAAATGGGTAATGTTTTAACTGACAGATGGTCAACCATAGCAAGATATTTACCAGGAAGAACTGATAATGAAATAAAAAATTACTGGAGAACGCATTTCAAGAAGATGAAGCCAAAGAGAGAGGCTCAAATGGTTGTTCCAAAACCAGACAACAAAACATCACCACCAATCAGCTTTGAACAAGACAGAGAGGAGAAAGATATGATGAAGCCATGTGGAAGAGACAATGATGAATTAGGGATGGTCTTTACAGAGCCTGCAGCCATGGCGGCTGATCAGAGCTACTTGTCAATGGTGTATGAAGATTTTGCAACCTGGGCGGCAGCTGCGGCGGCGGAAGAGAGCTACTTATGGGGTGGCCTTTGGGAAGATTCAAACAACCTTTTGTAATGGGGAACCTATCTTTTTAAGAAGCAATGTTGACTATAGATCCAACGACATAATACAAGTTTGCTATTAGAATATGGATGGATTATGAACCCTGGG

mRNA sequence

AGAAGAAGAAGAAGATATAAAAATGGATGCAGAAGAAAAAGAATGGAGGAAGGGGCCATGGACTCCTGAGGAAGACAAGTTGTTGTCTGAATACGTGAAAGTGCATGGCGAAGGAAGATGGACTTCTGTTGCCACTGGTTCACGTTTGAATAGAACGGGAAAAAGTTGCAGATTGAGATGGGTGAATTATCTTAGACCGGGTCTTAAGAGAGGCCATCTCACTCCTCTTGAGGAAGGCATTATCATAGAACTTCATGCTCTTTGGGGTAACAAATGGTCAACCATAGCAAGATATTTACCAGGAAGAACTGATAATGAAATAAAAAATTACTGGAGAACGCATTTCAAGAAGATGAAGCCAAAGAGAGAGGCTCAAATGGTTGTTCCAAAACCAGACAACAAAACATCACCACCAATCAGCTTTGAACAAGACAGAGAGGAGAAAGATATGATGAAGCCATGTGGAAGAGACAATGATGAATTAGGGATGGTCTTTACAGAGCCTGCAGCCATGGCGGCTGATCAGAGCTACTTGTCAATGGTGTATGAAGATTTTGCAACCTGGGCGGCAGCTGCGGCGGCGGAAGAGAGCTACTTATGGGGTGGCCTTTGGGAAGATTCAAACAACCTTTTGTAATGGGGAACCTATCTTTTTAAGAAGCAATGTTGACTATAGATCCAACGACATAATACAAGTTTGCTATTAGAATATGGATGGATTATGAACCCTGGG

Coding sequence (CDS)

ATGGATGCAGAAGAAAAAGAATGGAGGAAGGGGCCATGGACTCCTGAGGAAGACAAGTTGTTGTCTGAATACGTGAAAGTGCATGGCGAAGGAAGATGGACTTCTGTTGCCACTGGTTCACGTTTGAATAGAACGGGAAAAAGTTGCAGATTGAGATGGGTGAATTATCTTAGACCGGGTCTTAAGAGAGGCCATCTCACTCCTCTTGAGGAAGGCATTATCATAGAACTTCATGCTCTTTGGGGTAACAAATGGTCAACCATAGCAAGATATTTACCAGGAAGAACTGATAATGAAATAAAAAATTACTGGAGAACGCATTTCAAGAAGATGAAGCCAAAGAGAGAGGCTCAAATGGTTGTTCCAAAACCAGACAACAAAACATCACCACCAATCAGCTTTGAACAAGACAGAGAGGAGAAAGATATGATGAAGCCATGTGGAAGAGACAATGATGAATTAGGGATGGTCTTTACAGAGCCTGCAGCCATGGCGGCTGATCAGAGCTACTTGTCAATGGTGTATGAAGATTTTGCAACCTGGGCGGCAGCTGCGGCGGCGGAAGAGAGCTACTTATGGGGTGGCCTTTGGGAAGATTCAAACAACCTTTTGTAA

Homology

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BLAST of CmoCh04G029420 vs. Swiss-Prot
Match: MYB59_ARATH (Transcription factor MYB59 OS=Arabidopsis thaliana GN=MYB59 PE=2 SV=2)

HSP 1 Score: 166.4 bits (420), Expect = 3.3e-40
Identity = 75/119 (63.03%), Postives = 91/119 (76.47%), Query Frame = 1


Query: 1   MDAEEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVATGSRLNRTGKSCRLRWVNYLRPG 60
           M   ++E+RKGPWT +ED LL  +V + G+ RW  VA  S LNRTGKSCRLRWVNYL PG
Sbjct: 1   MKLVQEEYRKGPWTEQEDILLVNFVHLFGDRRWDFVAKVSGLNRTGKSCRLRWVNYLHPG 60

Query: 61  LKRGHLTPLEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKMKPKREAQM 120
           LKRG +TP EE +++ELHA WGN+WS IAR LPGRTDNEIKNYWRTH +K   +++  M
Sbjct: 61  LKRGKMTPQEERLVLELHAKWGNRWSKIARKLPGRTDNEIKNYWRTHMRKKAQEKKRPM 119

[Close]

BLAST of CmoCh04G029420 vs. Swiss-Prot
Match: MYBA2_ORYSJ (Myb-related protein MYBAS2 OS=Oryza sativa subsp. japonica GN=MYBAS2 PE=2 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 1.4e-38
Identity = 74/114 (64.91%), Postives = 88/114 (77.19%), Query Frame = 1


Query: 6   KEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVATGSRLNRTGKSCRLRWVNYLRPGLKRGH 65
           +E RKGPWT +ED  L   V++ GE RW  +A  S LNRTGKSCRLRWVNYL PGLKRG 
Sbjct: 6   EEIRKGPWTEQEDLQLVCTVRLFGERRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRGR 65

Query: 66  LTPLEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKMKPKREAQM 120
           ++P EE +I+ELHA WGN+WS IAR LPGRTDNEIKNYWRTH +K   +R++ M
Sbjct: 66  MSPHEERLILELHARWGNRWSRIARRLPGRTDNEIKNYWRTHMRKKAQERKSNM 119

[Close]

BLAST of CmoCh04G029420 vs. Swiss-Prot
Match: MYB48_ARATH (Transcription factor MYB48 OS=Arabidopsis thaliana GN=MYB48 PE=2 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 1.8e-38
Identity = 72/113 (63.72%), Postives = 88/113 (77.88%), Query Frame = 1


Query: 4   EEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVATGSRLNRTGKSCRLRWVNYLRPGLKR 63
           +E+  RKGPWT +ED LL  +V + G+ RW  +A  S LNRTGKSCRLRWVNYL PGLKR
Sbjct: 3   QEEGNRKGPWTEQEDILLVNFVHLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKR 62

Query: 64  GHLTPLEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKMKPKRE 117
           G +TP EE +++ELHA WGN+WS IAR LPGRTDNEIKNYWRTH +K   +++
Sbjct: 63  GKMTPQEERLVLELHAKWGNRWSKIARKLPGRTDNEIKNYWRTHMRKKAQEKK 115

[Close]

BLAST of CmoCh04G029420 vs. Swiss-Prot
Match: MYBA1_ORYSJ (Myb-related protein MYBAS1 OS=Oryza sativa subsp. japonica GN=MYBAS1 PE=2 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 4.0e-38
Identity = 74/114 (64.91%), Postives = 85/114 (74.56%), Query Frame = 1


Query: 6   KEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVATGSRLNRTGKSCRLRWVNYLRPGLKRGH 65
           +E RKGPWT +ED  L   V++ G+ RW  VA  S LNRTGKSCRLRWVNYL PGLK G 
Sbjct: 6   EEMRKGPWTEQEDLQLVCTVRLFGDRRWDFVAKVSGLNRTGKSCRLRWVNYLHPGLKHGR 65

Query: 66  LTPLEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKMKPKREAQM 120
           ++P EE +IIELHA WGN+WS IAR LPGRTDNEIKNYWRTH +K   +R   M
Sbjct: 66  MSPKEEHLIIELHARWGNRWSRIARRLPGRTDNEIKNYWRTHMRKKAQERRGDM 119

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BLAST of CmoCh04G029420 vs. Swiss-Prot
Match: MYB05_ANTMA (Myb-related protein 305 OS=Antirrhinum majus GN=MYB305 PE=2 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 2.6e-37
Identity = 68/109 (62.39%), Postives = 87/109 (79.82%), Query Frame = 1


Query: 2   DAEEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVATGSRLNRTGKSCRLRWVNYLRPGL 61
           ++++ E RKGPWT EED +L  Y+  HGEG W S+A  + L RTGKSCRLRW+NYLRP +
Sbjct: 7   NSQDVEVRKGPWTMEEDLILINYIANHGEGVWNSLARSAGLKRTGKSCRLRWLNYLRPDV 66

Query: 62  KRGHLTPLEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKK 111
           +RG++TP E+ +I+ELHA WGN+WS IA+ LPGRTDNEIKNYWRT  +K
Sbjct: 67  RRGNITPEEQLLIMELHAKWGNRWSKIAKTLPGRTDNEIKNYWRTRIQK 115

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BLAST of CmoCh04G029420 vs. TrEMBL
Match: A0A0A0KSK2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G641610 PE=4 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 1.2e-73
Identity = 140/199 (70.35%), Postives = 157/199 (78.89%), Query Frame = 1


Query: 4   EEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVATGSRLNRTGKSCRLRWVNYLRPGLKR 63
           EE+EWRKGPWT +EDKLL EYVKVHGEGRW SVA GS LNRTGKSCRLRWVNYLRPGLKR
Sbjct: 33  EEQEWRKGPWTSDEDKLLCEYVKVHGEGRWNSVAKGSGLNRTGKSCRLRWVNYLRPGLKR 92

Query: 64  GHLTPLEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKMKPKREAQMVVPK 123
            HLTP EEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKMKPKR+++++V K
Sbjct: 93  CHLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKMKPKRKSKIMVGK 152

Query: 124 PDNKTSPPISFEQDREEKDMMKPCGRDNDELGMVFTEPAAMAADQS--YLSMVYEDFATW 183
            DNKT PP++   +    ++MKP   DN++L MVFTEP AM   +   YLSMVY+D   W
Sbjct: 153 TDNKTMPPVT-RCEEHVMELMKPYDSDNNDLSMVFTEPTAMEDHEQTYYLSMVYQDLTNW 212

Query: 184 AAAAAAEESYLW--GGLWE 199
           AA    E  + W  GG  E
Sbjct: 213 AAEKKEESLWEWPLGGFRE 230

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BLAST of CmoCh04G029420 vs. TrEMBL
Match: V4STY9_9ROSI (Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10013466mg PE=4 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 2.7e-57
Identity = 122/215 (56.74%), Postives = 147/215 (68.37%), Query Frame = 1


Query: 5   EKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVATGSRLNRTGKSCRLRWVNYLRPGLKRG 64
           E+ WRKGPWTPEEDKLL+E+V +HGEGRW+SVA  + LNR+GKSCRLRWVNYLRPGLKRG
Sbjct: 8   EQGWRKGPWTPEEDKLLTEHVNLHGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRG 67

Query: 65  HLTPLEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKMK-----PKREAQM 124
            LTP EEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKK K      KR+A +
Sbjct: 68  QLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKEKSSQKQEKRKALL 127

Query: 125 VVPKPDNKTSPPISFEQDREEKDMMKPCGRD-------NDELGMVFTEPAAMAADQSYLS 184
           +  K   +       +Q + E +M +    D         E  M F +P     +QS+ +
Sbjct: 128 LKQKQQQQK------QQQQHEDNMNRVSSNDEKMMSTAEHEKQMAFMQPPMAMENQSWPT 187

Query: 185 MVYEDFATWAA----AAAAEESYLWGGLW--EDSN 202
           M Y+D A+W +     A  +E  LWGGLW  +D+N
Sbjct: 188 M-YQDIASWPSDHHQPAVIDELGLWGGLWTFDDTN 215

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BLAST of CmoCh04G029420 vs. TrEMBL
Match: A0A067FY73_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g047854mg PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 1.3e-56
Identity = 122/215 (56.74%), Postives = 147/215 (68.37%), Query Frame = 1


Query: 5   EKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVATGSRLNRTGKSCRLRWVNYLRPGLKRG 64
           E+ WRKGPWTPEEDKLL+E+V + GEGRW+SVA  + LNR+GKSCRLRWVNYLRPGLKRG
Sbjct: 8   EQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRG 67

Query: 65  HLTPLEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKMK-----PKREAQM 124
            LTP EEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKK K      KR+A +
Sbjct: 68  QLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKEKSSQKQEKRKALL 127

Query: 125 VVPKPDNKTSPPISFEQDREEKDMMKPCGRD-------NDELGMVFTEPAAMAADQSYLS 184
           +  K   +       +Q + E +M +    D         E  M F +PA    +QS+ +
Sbjct: 128 LKQKQQQQK------QQQQHEDNMNRVSSNDEKTMSTAEHEKQMAFMQPAMAMENQSWPT 187

Query: 185 MVYEDFATWAA----AAAAEESYLWGGLW--EDSN 202
           M Y+D A+W +     A  +E  LWGGLW  +D+N
Sbjct: 188 M-YQDIASWPSDHHQPAVIDELGLWGGLWTFDDTN 215

[Close]

BLAST of CmoCh04G029420 vs. TrEMBL
Match: M0ZLR9_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400001376 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 2.1e-54
Identity = 115/210 (54.76%), Postives = 139/210 (66.19%), Query Frame = 1


Query: 2   DAEEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVATGSRLNRTGKSCRLRWVNYLRPGL 61
           +++E+ WRKGPWTPEEDKLLSEYV +HGEGRW+SV+  + LNRTGKSCRLRWVNYLRPGL
Sbjct: 11  NSDEQGWRKGPWTPEEDKLLSEYVNLHGEGRWSSVSRCAGLNRTGKSCRLRWVNYLRPGL 70

Query: 62  KRGHLTPLEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKMKPKREAQMVV 121
           KRGH+TP EEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFK    K++ + ++
Sbjct: 71  KRGHITPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKTKVVKQDKKKIM 130

Query: 122 PKPDN-------KTSPPISFEQDRE-------EKDMMKPCGRDNDELGMVFTEPAAMAAD 181
            +  N       +T   I   +  E       + +M      + DE  +V   P   ++D
Sbjct: 131 RQMRNHPQQNYTRTDKKIMSSEAEEVIMIKSDDDNMFISSTNNYDEDPVVELPPVTTSSD 190

Query: 182 QSYLSMVYEDFATWAAAAAAEESYLWGGLW 198
            SY         TW      +E  LWGGLW
Sbjct: 191 TSY---------TWTETFPMDE--LWGGLW 209

[Close]

BLAST of CmoCh04G029420 vs. TrEMBL
Match: A0A061EFJ9_THECC (Myb domain protein 121 OS=Theobroma cacao GN=TCM_018971 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 2.8e-54
Identity = 117/211 (55.45%), Postives = 141/211 (66.82%), Query Frame = 1


Query: 2   DAEEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVATGSRLNRTGKSCRLRWVNYLRPGL 61
           +A ++ WRKGPWTPEEDKLL+EYV +HGEGRW+SVA  + LNR+GKSCRLRWVNYLRPGL
Sbjct: 8   EAPQQGWRKGPWTPEEDKLLTEYVNLHGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGL 67

Query: 62  KRGHLTPLEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKK------MKPKR 121
           KRGHLTP EEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKK       + KR
Sbjct: 68  KRGHLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKKEKSSQKQEKR 127

Query: 122 EAQMVVPKPDNKTSPPISFEQDREEKDMMKPCGRDNDELGMVFTEPAAMAADQSYLSMVY 181
           +AQ +  K   +   P   + D++E   + P   +     +     A    +  ++    
Sbjct: 128 KAQTLKLKQQLQQQQP-KPQPDKDEMKRVLPVQTEKANTKVSQVTEAQARPEMVFMYPTL 187

Query: 182 ED----FATWAAAAAAEESY-----LWGGLW 198
           ED      + AAAA+  + Y     LWGGLW
Sbjct: 188 EDQCLPVTSPAAAASWLDQYLVDEGLWGGLW 217

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BLAST of CmoCh04G029420 vs. TAIR10
Match: AT3G30210.1 (AT3G30210.1 myb domain protein 121)

HSP 1 Score: 199.5 bits (506), Expect = 2.0e-51
Identity = 106/203 (52.22%), Postives = 129/203 (63.55%), Query Frame = 1


Query: 4   EEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVATGSRLNRTGKSCRLRWVNYLRPGLKR 63
           +++  RKGPWT EEDKLL+EYV  HGEGRW++VA  + LNR+GKSCRLRWVNYLRPGLKR
Sbjct: 23  QQQGCRKGPWTLEEDKLLAEYVTSHGEGRWSTVAKCAGLNRSGKSCRLRWVNYLRPGLKR 82

Query: 64  GHLTPLEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKMKPKREAQMVVPK 123
           G +TP EEGII+ELH+LWGNKWSTIARYLPGRTDNEIKNYWRTH+KK +     Q  V K
Sbjct: 83  GQITPQEEGIILELHSLWGNKWSTIARYLPGRTDNEIKNYWRTHYKKNQKSSSKQDKVKK 142

Query: 124 P--------DNKTSPPISFEQDREEKDMMKPCGRDND-ELGMVFTEPAAMAADQSYLSMV 183
                    D K  P    E  + +         DND  +      P ++  D+ Y  M 
Sbjct: 143 SLSRKQQQVDLKPQPQAQSENHQSQLVSQDHMNIDNDHNIASSLYYPTSVFDDKLY--MP 202

Query: 184 YEDFATWAAAAAAEESYLWGGLW 198
                T +  +  +E +LWG LW
Sbjct: 203 QSVATTSSDHSMIDEGHLWGSLW 223

[Close]

BLAST of CmoCh04G029420 vs. TAIR10
Match: AT4G13480.1 (AT4G13480.1 myb domain protein 79)

HSP 1 Score: 186.0 bits (471), Expect = 2.3e-47
Identity = 83/106 (78.30%), Postives = 91/106 (85.85%), Query Frame = 1


Query: 5   EKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVATGSRLNRTGKSCRLRWVNYLRPGLKRG 64
           E+ WRKGPWT EED+LL EYV+VHGEGRW SV+  + L R GKSCRLRWVNYLRP LKRG
Sbjct: 3   EEVWRKGPWTAEEDRLLIEYVRVHGEGRWNSVSKLAGLKRNGKSCRLRWVNYLRPDLKRG 62

Query: 65  HLTPLEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKK 111
            +TP EE II+ELHA WGN+WSTIAR LPGRTDNEIKNYWRTHFKK
Sbjct: 63  QITPHEESIILELHAKWGNRWSTIARSLPGRTDNEIKNYWRTHFKK 108

[Close]

BLAST of CmoCh04G029420 vs. TAIR10
Match: AT3G24310.1 (AT3G24310.1 myb domain protein 305)

HSP 1 Score: 183.3 bits (464), Expect = 1.5e-46
Identity = 89/137 (64.96%), Postives = 102/137 (74.45%), Query Frame = 1


Query: 5   EKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVATGSRLNRTGKSCRLRWVNYLRPGLKRG 64
           E+ WRKGPWT EED+LL +YV++HGEGRW SVA  + L R GKSCRLRWVNYLRP LKRG
Sbjct: 15  EEGWRKGPWTAEEDRLLIDYVQLHGEGRWNSVARLAGLKRNGKSCRLRWVNYLRPDLKRG 74

Query: 65  HLTPLEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKK--MKPKREAQMVVP 124
            +TP EE II+ELHA WGN+WSTIAR LPGRTDNEIKNYWRTHFKK    P   A+    
Sbjct: 75  QITPHEETIILELHAKWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKTKSPTNSAE---- 134

Query: 125 KPDNKTSPPISFEQDRE 140
           K  N+      F+Q R+
Sbjct: 135 KTKNRILKRQQFQQQRQ 147

[Close]

BLAST of CmoCh04G029420 vs. TAIR10
Match: AT5G59780.3 (AT5G59780.3 myb domain protein 59)

HSP 1 Score: 166.4 bits (420), Expect = 1.8e-41
Identity = 75/119 (63.03%), Postives = 91/119 (76.47%), Query Frame = 1


Query: 1   MDAEEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVATGSRLNRTGKSCRLRWVNYLRPG 60
           M   ++E+RKGPWT +ED LL  +V + G+ RW  VA  S LNRTGKSCRLRWVNYL PG
Sbjct: 1   MKLVQEEYRKGPWTEQEDILLVNFVHLFGDRRWDFVAKVSGLNRTGKSCRLRWVNYLHPG 60

Query: 61  LKRGHLTPLEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKMKPKREAQM 120
           LKRG +TP EE +++ELHA WGN+WS IAR LPGRTDNEIKNYWRTH +K   +++  M
Sbjct: 61  LKRGKMTPQEERLVLELHAKWGNRWSKIARKLPGRTDNEIKNYWRTHMRKKAQEKKRPM 119

[Close]

BLAST of CmoCh04G029420 vs. TAIR10
Match: AT1G68320.1 (AT1G68320.1 myb domain protein 62)

HSP 1 Score: 161.0 bits (406), Expect = 7.8e-40
Identity = 69/109 (63.30%), Postives = 90/109 (82.57%), Query Frame = 1


Query: 2   DAEEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVATGSRLNRTGKSCRLRWVNYLRPGL 61
           ++E++E R+GPWT EED LL+ Y+  +GEGRW  VA  + L RTGKSCRLRW+NYL+P +
Sbjct: 13  ESEDEELRRGPWTLEEDTLLTNYILHNGEGRWNHVAKCAGLKRTGKSCRLRWLNYLKPDI 72

Query: 62  KRGHLTPLEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKK 111
           +RG+LTP E+ +I+ELH+ WGN+WS IA+YLPGRTDNEIKNYWRT  +K
Sbjct: 73  RRGNLTPQEQLLILELHSKWGNRWSKIAQYLPGRTDNEIKNYWRTRVQK 121

[Close]

BLAST of CmoCh04G029420 vs. NCBI nr
Match: gi|659119529|ref|XP_008459705.1| (PREDICTED: transcription factor MYB59-like [Cucumis melo])

HSP 1 Score: 292.4 bits (747), Expect = 6.3e-76
Identity = 148/211 (70.14%), Postives = 165/211 (78.20%), Query Frame = 1


Query: 4   EEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVATGSRLNRTGKSCRLRWVNYLRPGLKR 63
           EE+EWRKGPWT EEDKLL EYVKVHGEGRW+SVA GS LNRTGKSCRLRWVNYL+PGLKR
Sbjct: 5   EEQEWRKGPWTVEEDKLLCEYVKVHGEGRWSSVAKGSGLNRTGKSCRLRWVNYLKPGLKR 64

Query: 64  GHLTPLEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKMKPK--REAQMVV 123
           GHLTP EEGIIIELHALWGNKWSTIA+YLPGRTDNEIKNYWRTHFKKMKPK  R++Q++V
Sbjct: 65  GHLTPQEEGIIIELHALWGNKWSTIAKYLPGRTDNEIKNYWRTHFKKMKPKPRRKSQIIV 124

Query: 124 PKPDNKTSPPISFEQDREEKDMMKPCGRDNDELGMVFTEPAAMAADQS--YLSMVYEDFA 183
           PK DNKT PPIS  ++R   ++MKP   D+D+LGMVFT+P AM   +   YLS VY+D  
Sbjct: 125 PKTDNKTLPPISRCEER-VMELMKP--YDSDDLGMVFTDPTAMEDHEQTYYLSKVYQDLT 184

Query: 184 TW--------AAAAAAEESYLWGGLWEDSNN 203
            W        A  A  EE  LW GLWE   N
Sbjct: 185 NWTVESGAVAAVVAEQEEESLWDGLWEVPEN 212

[Close]

BLAST of CmoCh04G029420 vs. NCBI nr
Match: gi|449447677|ref|XP_004141594.1| (PREDICTED: transcription factor MYB59-like [Cucumis sativus])

HSP 1 Score: 284.3 bits (726), Expect = 1.7e-73
Identity = 140/199 (70.35%), Postives = 157/199 (78.89%), Query Frame = 1


Query: 4   EEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVATGSRLNRTGKSCRLRWVNYLRPGLKR 63
           EE+EWRKGPWT +EDKLL EYVKVHGEGRW SVA GS LNRTGKSCRLRWVNYLRPGLKR
Sbjct: 5   EEQEWRKGPWTSDEDKLLCEYVKVHGEGRWNSVAKGSGLNRTGKSCRLRWVNYLRPGLKR 64

Query: 64  GHLTPLEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKMKPKREAQMVVPK 123
            HLTP EEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKMKPKR+++++V K
Sbjct: 65  CHLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKMKPKRKSKIMVGK 124

Query: 124 PDNKTSPPISFEQDREEKDMMKPCGRDNDELGMVFTEPAAMAADQS--YLSMVYEDFATW 183
            DNKT PP++   +    ++MKP   DN++L MVFTEP AM   +   YLSMVY+D   W
Sbjct: 125 TDNKTMPPVT-RCEEHVMELMKPYDSDNNDLSMVFTEPTAMEDHEQTYYLSMVYQDLTNW 184

Query: 184 AAAAAAEESYLW--GGLWE 199
           AA    E  + W  GG  E
Sbjct: 185 AAEKKEESLWEWPLGGFRE 202

[Close]

BLAST of CmoCh04G029420 vs. NCBI nr
Match: gi|700197351|gb|KGN52528.1| (hypothetical protein Csa_5G641610 [Cucumis sativus])

HSP 1 Score: 284.3 bits (726), Expect = 1.7e-73
Identity = 140/199 (70.35%), Postives = 157/199 (78.89%), Query Frame = 1


Query: 4   EEKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVATGSRLNRTGKSCRLRWVNYLRPGLKR 63
           EE+EWRKGPWT +EDKLL EYVKVHGEGRW SVA GS LNRTGKSCRLRWVNYLRPGLKR
Sbjct: 33  EEQEWRKGPWTSDEDKLLCEYVKVHGEGRWNSVAKGSGLNRTGKSCRLRWVNYLRPGLKR 92

Query: 64  GHLTPLEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKMKPKREAQMVVPK 123
            HLTP EEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKMKPKR+++++V K
Sbjct: 93  CHLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKMKPKRKSKIMVGK 152

Query: 124 PDNKTSPPISFEQDREEKDMMKPCGRDNDELGMVFTEPAAMAADQS--YLSMVYEDFATW 183
            DNKT PP++   +    ++MKP   DN++L MVFTEP AM   +   YLSMVY+D   W
Sbjct: 153 TDNKTMPPVT-RCEEHVMELMKPYDSDNNDLSMVFTEPTAMEDHEQTYYLSMVYQDLTNW 212

Query: 184 AAAAAAEESYLW--GGLWE 199
           AA    E  + W  GG  E
Sbjct: 213 AAEKKEESLWEWPLGGFRE 230

[Close]

BLAST of CmoCh04G029420 vs. NCBI nr
Match: gi|567876715|ref|XP_006430947.1| (hypothetical protein CICLE_v10013466mg, partial [Citrus clementina])

HSP 1 Score: 229.9 bits (585), Expect = 3.9e-57
Identity = 122/215 (56.74%), Postives = 147/215 (68.37%), Query Frame = 1


Query: 5   EKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVATGSRLNRTGKSCRLRWVNYLRPGLKRG 64
           E+ WRKGPWTPEEDKLL+E+V +HGEGRW+SVA  + LNR+GKSCRLRWVNYLRPGLKRG
Sbjct: 8   EQGWRKGPWTPEEDKLLTEHVNLHGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRG 67

Query: 65  HLTPLEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKMK-----PKREAQM 124
            LTP EEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKK K      KR+A +
Sbjct: 68  QLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKEKSSQKQEKRKALL 127

Query: 125 VVPKPDNKTSPPISFEQDREEKDMMKPCGRD-------NDELGMVFTEPAAMAADQSYLS 184
           +  K   +       +Q + E +M +    D         E  M F +P     +QS+ +
Sbjct: 128 LKQKQQQQK------QQQQHEDNMNRVSSNDEKMMSTAEHEKQMAFMQPPMAMENQSWPT 187

Query: 185 MVYEDFATWAA----AAAAEESYLWGGLW--EDSN 202
           M Y+D A+W +     A  +E  LWGGLW  +D+N
Sbjct: 188 M-YQDIASWPSDHHQPAVIDELGLWGGLWTFDDTN 215

[Close]

BLAST of CmoCh04G029420 vs. NCBI nr
Match: gi|568858220|ref|XP_006482652.1| (PREDICTED: transcription factor MYB57 [Citrus sinensis])

HSP 1 Score: 227.6 bits (579), Expect = 1.9e-56
Identity = 122/215 (56.74%), Postives = 147/215 (68.37%), Query Frame = 1


Query: 5   EKEWRKGPWTPEEDKLLSEYVKVHGEGRWTSVATGSRLNRTGKSCRLRWVNYLRPGLKRG 64
           E+ WRKGPWTPEEDKLL+E+V + GEGRW+SVA  + LNR+GKSCRLRWVNYLRPGLKRG
Sbjct: 8   EQGWRKGPWTPEEDKLLTEHVNLLGEGRWSSVARSAGLNRSGKSCRLRWVNYLRPGLKRG 67

Query: 65  HLTPLEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKMK-----PKREAQM 124
            LTP EEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKK K      KR+A +
Sbjct: 68  QLTPQEEGIIIELHALWGNKWSTIARYLPGRTDNEIKNYWRTHFKKEKSSQKQEKRKALL 127

Query: 125 VVPKPDNKTSPPISFEQDREEKDMMKPCGRD-------NDELGMVFTEPAAMAADQSYLS 184
           +  K   +       +Q + E +M +    D         E  M F +PA    +QS+ +
Sbjct: 128 LKQKQQQQK------QQQQHEDNMNRVSSNDEKTMSTAEHEKQMAFMQPAMAMENQSWPT 187

Query: 185 MVYEDFATWAA----AAAAEESYLWGGLW--EDSN 202
           M Y+D A+W +     A  +E  LWGGLW  +D+N
Sbjct: 188 M-YQDIASWPSDHHQPAVIDELGLWGGLWTFDDTN 215

The following BLAST results are available for this feature:

BLAST of CmoCh04G029420 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MYB59_ARATH	3.3e-40	63.03	Transcription factor MYB59 OS=Arabidopsis thaliana GN=MYB59 PE=2 SV=2	[more]
MYBA2_ORYSJ	1.4e-38	64.91	Myb-related protein MYBAS2 OS=Oryza sativa subsp. japonica GN=MYBAS2 PE=2 SV=1	[more]
MYB48_ARATH	1.8e-38	63.72	Transcription factor MYB48 OS=Arabidopsis thaliana GN=MYB48 PE=2 SV=1	[more]
MYBA1_ORYSJ	4.0e-38	64.91	Myb-related protein MYBAS1 OS=Oryza sativa subsp. japonica GN=MYBAS1 PE=2 SV=1	[more]
MYB05_ANTMA	2.6e-37	62.39	Myb-related protein 305 OS=Antirrhinum majus GN=MYB305 PE=2 SV=1	[more]

BLAST of CmoCh04G029420 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KSK2_CUCSA	1.2e-73	70.35	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G641610 PE=4 SV=1	[more]
V4STY9_9ROSI	2.7e-57	56.74	Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10013466mg PE=...	[more]
A0A067FY73_CITSI	1.3e-56	56.74	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g047854mg PE=4 SV=1	[more]
M0ZLR9_SOLTU	2.1e-54	54.76	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400001376 PE=4 SV=1	[more]
A0A061EFJ9_THECC	2.8e-54	55.45	Myb domain protein 121 OS=Theobroma cacao GN=TCM_018971 PE=4 SV=1	[more]

BLAST of CmoCh04G029420 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G30210.1	2.0e-51	52.22	myb domain protein 121	[more]
AT4G13480.1	2.3e-47	78.30	myb domain protein 79	[more]
AT3G24310.1	1.5e-46	64.96	myb domain protein 305	[more]
AT5G59780.3	1.8e-41	63.03	myb domain protein 59	[more]
AT1G68320.1	7.8e-40	63.30	myb domain protein 62	[more]

BLAST of CmoCh04G029420 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659119529\|ref\|XP_008459705.1\|	6.3e-76	70.14	PREDICTED: transcription factor MYB59-like [Cucumis melo]	[more]
gi\|449447677\|ref\|XP_004141594.1\|	1.7e-73	70.35	PREDICTED: transcription factor MYB59-like [Cucumis sativus]	[more]
gi\|700197351\|gb\|KGN52528.1\|	1.7e-73	70.35	hypothetical protein Csa_5G641610 [Cucumis sativus]	[more]
gi\|567876715\|ref\|XP_006430947.1\|	3.9e-57	56.74	hypothetical protein CICLE_v10013466mg, partial [Citrus clementina]	[more]
gi\|568858220\|ref\|XP_006482652.1\|	1.9e-56	56.74	PREDICTED: transcription factor MYB57 [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001005	SANT/Myb
IPR009057	Homeobox-like_sf
IPR017930	Myb_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0009737	response to abscisic acid
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G029420.1	CmoCh04G029420.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 10..57 score: 2.8E-17coord: 63..107 score: 2.8
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 62..110 score: 5.8E-13coord: 9..59 score: 7.7
IPR009057	Homeodomain-like	GENE3D	G3DSA:1.10.10.60		coord: 65..110 score: 9.2E-23coord: 11..64 score: 4.0
IPR009057	Homeodomain-like	unknown	SSF46689	Homeodomain-like	coord: 8..104 score: 2.36
IPR017930	Myb domain	PROFILE	PS51294	HTH_MYB	coord: 62..112 score: 18.233coord: 5..61 score: 24
None	No IPR available	PANTHER	PTHR10641	MYB-LIKE DNA-BINDING PROTEIN MYB	coord: 1..110 score: 1.4
None	No IPR available	PANTHER	PTHR10641:SF572	MYB TRANSCRIPTION FACTOR	coord: 1..110 score: 1.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G029420	Cucsa.238540	Cucumber (Gy14) v1	cgycmoB0663
CmoCh04G029420	CmaCh04G028120	Cucurbita maxima (Rimu)	cmacmoB729
CmoCh04G029420	Cla016504	Watermelon (97103) v1	cmowmB730
CmoCh04G029420	Csa5G641610	Cucumber (Chinese Long) v2	cmocuB714
CmoCh04G029420	MELO3C022047	Melon (DHL92) v3.5.1	cmomeB624
CmoCh04G029420	ClCG11G004940	Watermelon (Charleston Gray)	cmowcgB621
CmoCh04G029420	CSPI05G29540	Wild cucumber (PI 183967)	cmocpiB722
CmoCh04G029420	Lsi03G001860	Bottle gourd (USVL1VR-Ls)	cmolsiB645
CmoCh04G029420	Cp4.1LG01g22460	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G029420	MELO3C022047.2	Melon (DHL92) v3.6.1	cmomedB713
CmoCh04G029420	CsaV3_5G038670	Cucumber (Chinese Long) v3	cmocucB0846
CmoCh04G029420	Cla97C11G211730	Watermelon (97103) v2	cmowmbB697
CmoCh04G029420	Bhi06G000255	Wax gourd	cmowgoB0835
CmoCh04G029420	CsGy5G028980	Cucumber (Gy14) v2	cgybcmoB625
CmoCh04G029420	Carg05894	Silver-seed gourd	carcmoB0033

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G029420	Wax gourd	cmowgoB0836
CmoCh04G029420	Cucurbita moschata (Rifu)	cmocmoB261
CmoCh04G029420	Cucurbita maxima (Rimu)	cmacmoB308
CmoCh04G029420	Cucurbita pepo (Zucchini)	cmocpeB657
CmoCh04G029420	Silver-seed gourd	carcmoB0370