CmoCh04G024750 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G024750
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionRING/U-box superfamily protein
LocationCmo_Chr04 : 18268407 .. 18269087 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGATGGATACTCTCTACGACTACCAAATATGGCAACCTGAAGAACACGAAGATGACGTTAATGTTACCATTTCCAATTCTCACTTGCTTCCATGTGACTGTTTCCTTTTCCACCTTCACTTTCGCCATGTTCTCCAGTCAAATCATCCTCAAGAATTACAGAGACTCCTAAACTCGTCTCTATCTTCGTTCTTGATACCTTGTGATGCATTTTTCGCCAGTGGCTTCAGTATCCTGATCGCGGTTTTCTCCGACACCGGCGTCGCTCAAGACTTCTTGGACGCGGCGGTACCGGACGTTCTGTCCGTCGCGGCCGATATAGCATGCAATCCTCTTAATGCTGGCCGTCGGGTACTTCCGTTGGCGGTGTCCGTTTTAGCCGTTTCGCCGTACAATGAACGCGAGGAAATTGGGCGAGTTTTGCGGGAATCCTCGCCGCAAGAGTTTAAAACGTCGCCGGCTAGTGAGTCGGCAATCGAAGGGTTGAAGACGGTGGAGATTGATGTCGGCGGAGAGTTGTTGATTGGAGAATGCAGAATATGTTTGGATGAACTAATGAACGGAATGGAAGTTACGCGATTGCCGTGCGCTCATTTTTACCACAGAGACTGTATCGTCAAATGGCTGGAGACGAGTCATTTGTGCCCGTTGTGTCGCTACGCAATGCCACTAAGCTGA

mRNA sequence

ATGGCGATGGATACTCTCTACGACTACCAAATATGGCAACCTGAAGAACACGAAGATGACGTTAATGTTACCATTTCCAATTCTCACTTGCTTCCATGTGACTGTTTCCTTTTCCACCTTCACTTTCGCCATGTTCTCCAGTCAAATCATCCTCAAGAATTACAGAGACTCCTAAACTCGTCTCTATCTTCGTTCTTGATACCTTGTGATGCATTTTTCGCCAGTGGCTTCAGTATCCTGATCGCGGTTTTCTCCGACACCGGCGTCGCTCAAGACTTCTTGGACGCGGCGGTACCGGACGTTCTGTCCGTCGCGGCCGATATAGCATGCAATCCTCTTAATGCTGGCCGTCGGGTACTTCCGTTGGCGGTGTCCGTTTTAGCCGTTTCGCCGTACAATGAACGCGAGGAAATTGGGCGAGTTTTGCGGGAATCCTCGCCGCAAGAGTTTAAAACGTCGCCGGCTAGTGAGTCGGCAATCGAAGGGTTGAAGACGGTGGAGATTGATGTCGGCGGAGAGTTGTTGATTGGAGAATGCAGAATATGTTTGGATGAACTAATGAACGGAATGGAAGTTACGCGATTGCCGTGCGCTCATTTTTACCACAGAGACTGTATCGTCAAATGGCTGGAGACGAGTCATTTGTGCCCGTTGTGTCGCTACGCAATGCCACTAAGCTGA

Coding sequence (CDS)

ATGGCGATGGATACTCTCTACGACTACCAAATATGGCAACCTGAAGAACACGAAGATGACGTTAATGTTACCATTTCCAATTCTCACTTGCTTCCATGTGACTGTTTCCTTTTCCACCTTCACTTTCGCCATGTTCTCCAGTCAAATCATCCTCAAGAATTACAGAGACTCCTAAACTCGTCTCTATCTTCGTTCTTGATACCTTGTGATGCATTTTTCGCCAGTGGCTTCAGTATCCTGATCGCGGTTTTCTCCGACACCGGCGTCGCTCAAGACTTCTTGGACGCGGCGGTACCGGACGTTCTGTCCGTCGCGGCCGATATAGCATGCAATCCTCTTAATGCTGGCCGTCGGGTACTTCCGTTGGCGGTGTCCGTTTTAGCCGTTTCGCCGTACAATGAACGCGAGGAAATTGGGCGAGTTTTGCGGGAATCCTCGCCGCAAGAGTTTAAAACGTCGCCGGCTAGTGAGTCGGCAATCGAAGGGTTGAAGACGGTGGAGATTGATGTCGGCGGAGAGTTGTTGATTGGAGAATGCAGAATATGTTTGGATGAACTAATGAACGGAATGGAAGTTACGCGATTGCCGTGCGCTCATTTTTACCACAGAGACTGTATCGTCAAATGGCTGGAGACGAGTCATTTGTGCCCGTTGTGTCGCTACGCAATGCCACTAAGCTGA
Homology
[Close]
BLAST of CmoCh04G024750 vs. Swiss-Prot
Match: RING1_GOSHI (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 8.1e-16
Identity = 42/115 (36.52%), Postives = 64/115 (55.65%), Query Frame = 1 

Query: 111 NPLNAGRRVLPLAVSVLAVSPYNEREEIGRVLRESSPQEFKTSPASESAIEGLKTVEIDV 170
           NP + G R LP  +    + P    E++ + L E+ P  + T PAS+SAIE L  V I  
Sbjct: 158 NPSDQGFR-LPANIGDYFIGP--GLEQLIQQLAENDPNRYGTPPASKSAIEALPLVNITK 217

Query: 171 GG-ELLIGECRICLDELMNGMEVTRLPCAHFYHRDCIVKWLETSHLCPLCRYAMP 225
                   +C +C+D+   G E  ++PC H YH+DC++ WLE  + CP+CR+ +P
Sbjct: 218 SNLNSEFNQCAVCMDDFEEGTEAKQMPCKHLYHKDCLLPWLELHNSCPVCRHELP 269

[Close]
BLAST of CmoCh04G024750 vs. Swiss-Prot
Match: RNG1L_ARATH (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.8e-15
Identity = 35/92 (38.04%), Postives = 62/92 (67.39%), Query Frame = 1 

Query: 136 EEIGRVLRESSPQEFKTSPASESAIEGLKTVEIDVGGELL---IGECRICLDELMNGMEV 195
           E++ + L E+ P  + T PAS+SAI+ L TV++    ++L   + +C +C+DE  +G +V
Sbjct: 172 EQLIQQLAENDPNRYGTPPASKSAIDALPTVKVTK--DMLKSEMNQCAVCMDEFEDGSDV 231

Query: 196 TRLPCAHFYHRDCIVKWLETSHLCPLCRYAMP 225
            ++PC H +H+DC++ WLE  + CP+CR+ +P
Sbjct: 232 KQMPCKHVFHQDCLLPWLELHNSCPVCRFELP 261

[Close]
BLAST of CmoCh04G024750 vs. Swiss-Prot
Match: CIP8_ARATH (E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana GN=CIP8 PE=1 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 7.1e-12
Identity = 30/70 (42.86%), Postives = 44/70 (62.86%), Query Frame = 1 

Query: 154 PASESAIEGLKTVEIDVGGELLIGECRICLDELMNGMEVTRLPCAHFYHRDCIVKWLETS 213
           PA++SAIE L+T E+      ++  C +C D ++ G    +LPC H YH DCIV WL T 
Sbjct: 232 PAAKSAIEALETFEVSSSEGEMVMVCAVCKDGMVMGETGKKLPCGHCYHGDCIVPWLGTR 291

Query: 214 HLCPLCRYAM 224
           + CP+CR+ +
Sbjct: 292 NSCPVCRFQL 301

[Close]
BLAST of CmoCh04G024750 vs. Swiss-Prot
Match: RDUF2_ARATH (E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana GN=DURF2 PE=1 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 6.0e-11
Identity = 43/118 (36.44%), Postives = 62/118 (52.54%), Query Frame = 1 

Query: 115 AGRRVLPLAVSVLAVSPYNER--EEIGRVLRESSPQEFKTS---PASESAIEGLKTVEID 174
           +G R LP +VS + +    ER  E++ ++  E+S      S   PAS+SAIE L  VEI 
Sbjct: 132 SGLRPLPDSVSEILMGSGFERLLEQLSQI--EASATGIGRSGNPPASKSAIESLPRVEIS 191

Query: 175 ---VGGELLIGECRICLDELMNGMEVTRLPCAHFYHRDCIVKWLETSHLCPLCRYAMP 225
              +G E     C +C +      E   +PC H +H DCIV WL   + CP+CR+ +P
Sbjct: 192 DCHIGSE---ANCAVCTEIFETETEAREMPCKHLFHDDCIVPWLSIRNSCPVCRFELP 244

[Close]
BLAST of CmoCh04G024750 vs. Swiss-Prot
Match: RN126_XENTR (E3 ubiquitin-protein ligase RNF126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.3e-09
Identity = 29/73 (39.73%), Postives = 41/73 (56.16%), Query Frame = 1 

Query: 154 PASESAIEGLKTVEID---VGGELLIGECRICLDELMNGMEVTRLPCAHFYHRDCIVKWL 213
           PA    I+ L T++I    VG  L   EC +C ++   G  V +LPC H +H DCI+ WL
Sbjct: 202 PADTEKIQALPTIQITEEHVGSGL---ECPVCKEDYTVGESVRQLPCNHLFHNDCIIPWL 261

Query: 214 ETSHLCPLCRYAM 224
           E    CP+CR ++
Sbjct: 262 EQHDTCPVCRKSL 271

[Close]
BLAST of CmoCh04G024750 vs. TrEMBL
Match: A0A0A0KDU3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G385070 PE=4 SV=1)

HSP 1 Score: 412.5 bits (1059), Expect = 3.2e-112
Identity = 201/226 (88.94%), Postives = 208/226 (92.04%), Query Frame = 1 

Query: 1   MAMDTLYDYQIWQPEEHEDDVNVTISNSHLLPCDCFLFHLHFRHVLQSNHPQELQRLLNS 60
           MAMDTLYDY IWQPEE EDD+NVTISNSHLLPC+CFLFHLHFRH+LQSNH Q+   LLNS
Sbjct: 1   MAMDTLYDYHIWQPEEGEDDLNVTISNSHLLPCNCFLFHLHFRHILQSNHSQQFHYLLNS 60

Query: 61  SLSSFLIPCDAFFASGFSILIAVFSDTGVAQDFLDAAVPDVLSVAADIACNPLNAGRRVL 120
           SLSSFLIPCD FFA+  SILIAVFS TGVAQDFLD AVPDVLSVAADIACNPLNAGR +L
Sbjct: 61  SLSSFLIPCDVFFATASSILIAVFSGTGVAQDFLDTAVPDVLSVAADIACNPLNAGRTIL 120

Query: 121 PLAVSVLAVSPYNEREEIGRVLRESSPQEFKTSPASESAIEGLKTVEIDVGGELLIGECR 180
           PLAVSVL VSPYNER+EIGRVLRESSPQ FKT PASE AIEGLK VEIDVGGELLIGECR
Sbjct: 121 PLAVSVLVVSPYNERQEIGRVLRESSPQAFKTLPASEMAIEGLKKVEIDVGGELLIGECR 180

Query: 181 ICLDELMNGMEVTRLPCAHFYHRDCIVKWLETSHLCPLCRYAMPLS 227
           ICLDELMNGMEVTRLPCAH YHRDCIVKWLETSHLCPLCRYAMPLS
Sbjct: 181 ICLDELMNGMEVTRLPCAHLYHRDCIVKWLETSHLCPLCRYAMPLS 226

[Close]
BLAST of CmoCh04G024750 vs. TrEMBL
Match: M5XI10_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021670mg PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 4.3e-48
Identity = 101/222 (45.50%), Postives = 143/222 (64.41%), Query Frame = 1 

Query: 3   MDTLYDYQIWQPEEHEDDVNVTISNSHLLPCDCFLFHLHFRHVLQSNHPQELQRLLNSSL 62
           M+T+Y Y I Q E+     N  +  +HLL CDCF+F L F H L+   PQ+L   LNS  
Sbjct: 1   METIYQYSISQVEQQ----NQVLPTTHLLACDCFIFRLDFTHQLKLCFPQDLNIPLNSIQ 60

Query: 63  SSFLIPCDAFFASGFSILIAVFSDTGVAQDFLDAAVPDVLSVAADIACNPLNAGRRVLPL 122
            SF +P D FF+     +  V S +GV+ DF+   +P+V S A D+A  P NAG R++PL
Sbjct: 61  ESFFVPFDVFFSHTQETIQTVLSGSGVSMDFVHVLLPEVHSFAMDVAQEPANAGPRIVPL 120

Query: 123 AVSVLAVSPYNEREEIGRVLRESSPQEFKTSPASESAIEGLKTVEIDVGGELLIGECRIC 182
            ++VLAV+P+++R++I R + ES  Q F   PA++S+I GLK V+ID     +  EC IC
Sbjct: 121 VLAVLAVTPFDDRDQIERAIMESG-QVFNPVPAAKSSIAGLKKVKID--NLSVTKECSIC 180

Query: 183 LDELMNGMEVTRLPCAHFYHRDCIVKWLETSHLCPLCRYAMP 225
           L+E   G+EV  +PC+H YH+DCIV+WL+ SHLCP CR+ +P
Sbjct: 181 LEEFSAGLEVVLMPCSHLYHKDCIVEWLKRSHLCPYCRFKLP 215

[Close]
BLAST of CmoCh04G024750 vs. TrEMBL
Match: B9RJ35_RICCO (Zinc finger protein, putative OS=Ricinus communis GN=RCOM_1030640 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 2.1e-39
Identity = 89/226 (39.38%), Postives = 138/226 (61.06%), Query Frame = 1 

Query: 3   MDTLYDYQIWQPEEHEDDVNVTISNSHLLPCDCFLFHLHFRHVLQSNHPQELQRLLNSSL 62
           M + Y+Y +WQ   ++D  ++ +       CD F   +HF HVL+ ++P+  Q  + ++ 
Sbjct: 1   MASTYEYYMWQDFNNKDSNDIDVD------CDIFDIQIHFHHVLEIHYPESNQIPVTTTH 60

Query: 63  SSFLIPCDAFFASG----FSILIAVFSDTGVAQDFLDAAVPDVLSVAADIACNPLNAGRR 122
            SF IP +  F+S      SI+ A+ S T  ++DF+D  +P+V S A ++A +P N   +
Sbjct: 61  RSFPIPRNLIFSSDDQSRSSIMDAILSTTAASRDFIDLILPEVSSFALEMATHPSNKNVK 120

Query: 123 VLPLAVSVLAVSPYNEREEIGRVLRESSPQEFKTSPASESAIEGLKTVEIDVGGELLIGE 182
           VL + + +  V+PY+EREEI R L E+  ++ +  PAS+S IEGLK V ID   + + GE
Sbjct: 121 VLTMGLLICVVTPYDEREEIDRALGETIQEKARFKPASKSCIEGLKRVRIDKDDDKISGE 180

Query: 183 -CRICLDELMNGMEVTRLPCAHFYHRDCIVKWLETSHLCPLCRYAM 224
            C +CL++   G  V RL C H +H DCIVKWL T+HLCPLCR+++
Sbjct: 181 TCMVCLEKESVGEVVIRLACGHVFHEDCIVKWLHTNHLCPLCRFSI 220

[Close]
BLAST of CmoCh04G024750 vs. TrEMBL
Match: B9GU33_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s08360g PE=4 SV=2)

HSP 1 Score: 169.5 bits (428), Expect = 4.8e-39
Identity = 91/207 (43.96%), Postives = 128/207 (61.84%), Query Frame = 1 

Query: 22  NVTISNSHLLPCDCFLFHLHFRHVLQSNHPQELQRLLNSSLSSFLIPCDAFFA--SGFSI 81
           NV  +NS     D  + HL F HVL+  +P+ +Q  LN++  S L P   F +  +  SI
Sbjct: 8   NVDSNNSTAPTTDAIIIHLQFSHVLELCYPETIQIPLNTTNESHLFPRQLFSSHVNRESI 67

Query: 82  LIAVFSDTGVAQDFLDAAVPDVLSVAADIACNPLNAGR-RVLPLAVSVLAVSPYNEREEI 141
           +  + S  G + DF+++A PD+ S A D+  NP NA    VL + +++   +PY+EREEI
Sbjct: 68  VKEILSSMGCSSDFIESAAPDISSFALDMVTNPCNASSSEVLTMVLAIHVTTPYDEREEI 127

Query: 142 GRVLRESSPQEF-KTSPASESAIEGLKTVEIDVGGELLIGECRICLDELMNGMEVTRLPC 201
            R L ES  QE  +  PAS+S I+GLK + ++  G   + EC +CL+E + G EV  LPC
Sbjct: 128 DRALSESLMQEASRFKPASKSCIDGLKRMSLE--GSCSMKECMVCLEEFLMGSEVVCLPC 187

Query: 202 AHFYHRDCIVKWLETSHLCPLCRYAMP 225
            H +H DCIV+WLETSHLCPLCR+AMP
Sbjct: 188 GHIFHGDCIVRWLETSHLCPLCRFAMP 212

[Close]
BLAST of CmoCh04G024750 vs. TrEMBL
Match: A0A0D2U3Q8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_008G153700 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.1e-27
Identity = 95/223 (42.60%), Postives = 123/223 (55.16%), Query Frame = 1 

Query: 28  SHLLPCDCFLFHLHFRHV------LQSNHPQELQRLLNSSLSSFLIPCDAFFA--SGFSI 87
           +HL P D  + H HF H+      + S+ PQ      N S+   L   D FF+  +G +I
Sbjct: 15  NHLEPLDFEISH-HFFHINVEFRYISSHDPQITLETRNRSI---LCRRDLFFSEQNGRNI 74

Query: 88  LIAVFSDTGVAQDFLDAA-VPDVLSVAADIACNPLNAGRRVLPLAVS-VLAVSPYNEREE 147
           LIA+ +D G +Q F+D   VPDV+S A D    P+N GR+V+ L V  V+ V P +E EE
Sbjct: 75  LIAMVADFGASQHFIDTVLVPDVMSFAWDTHSMPMNLGRQVIKLRVELVIEVRPNDEIEE 134

Query: 148 IGRVLRESSPQEFKTSPASESAIEGLKTV-----EID----------VGGELLIGECRIC 207
                  +S   FK  PAS+S+IE LK V     E+D            G     EC +C
Sbjct: 135 -----SLTSSVNFK--PASKSSIEALKRVIWDDDELDHIPLKKRRKLAKGLSSRKECVVC 194

Query: 208 LDELMNGMEVTRLPCAHFYHRDCIVKWLETSHLCPLCRYAMPL 226
           L+E ++G EV  LPC H YH  CIVKWLETSHLCPLCRY MP+
Sbjct: 195 LEEFLDGEEVASLPCGHVYHYGCIVKWLETSHLCPLCRYHMPI 226

[Close]
BLAST of CmoCh04G024750 vs. TAIR10
Match: AT3G19950.1 (AT3G19950.1 RING/U-box superfamily protein)

HSP 1 Score: 84.3 bits (207), Expect = 1.0e-16
Identity = 35/92 (38.04%), Postives = 62/92 (67.39%), Query Frame = 1 

Query: 136 EEIGRVLRESSPQEFKTSPASESAIEGLKTVEIDVGGELL---IGECRICLDELMNGMEV 195
           E++ + L E+ P  + T PAS+SAI+ L TV++    ++L   + +C +C+DE  +G +V
Sbjct: 172 EQLIQQLAENDPNRYGTPPASKSAIDALPTVKVTK--DMLKSEMNQCAVCMDEFEDGSDV 231

Query: 196 TRLPCAHFYHRDCIVKWLETSHLCPLCRYAMP 225
            ++PC H +H+DC++ WLE  + CP+CR+ +P
Sbjct: 232 KQMPCKHVFHQDCLLPWLELHNSCPVCRFELP 261

[Close]
BLAST of CmoCh04G024750 vs. TAIR10
Match: AT1G55530.1 (AT1G55530.1 RING/U-box superfamily protein)

HSP 1 Score: 78.6 bits (192), Expect = 5.6e-15
Identity = 35/83 (42.17%), Postives = 50/83 (60.24%), Query Frame = 1 

Query: 142 LRESSPQEFKTSPASESAIEGLKTVEIDVGGELLIGECRICLDELMNGMEVTRLPCAHFY 201
           L E+ P  + T PA + A+E L TV+I+   E L  +C +CLD+   G E   +PC H +
Sbjct: 191 LAENDPNRYGTPPAKKEAVEALATVKIE---ETL--QCSVCLDDFEIGTEAKLMPCTHKF 250

Query: 202 HRDCIVKWLETSHLCPLCRYAMP 225
           H DC++ WLE    CP+CRY +P
Sbjct: 251 HSDCLLPWLELHSSCPVCRYQLP 268

[Close]
BLAST of CmoCh04G024750 vs. TAIR10
Match: AT3G13430.1 (AT3G13430.1 RING/U-box superfamily protein)

HSP 1 Score: 73.6 bits (179), Expect = 1.8e-13
Identity = 33/85 (38.82%), Postives = 49/85 (57.65%), Query Frame = 1 

Query: 140 RVLRESSPQEFKTSPASESAIEGLKTVEIDVGGELLIGECRICLDELMNGMEVTRLPCAH 199
           R+        + T PA++ A+E L  V+I+    LL  +C +CLD+   GME   +PC H
Sbjct: 190 RLAENDLNNRYGTPPATKEAVEALAMVKIE--DSLL--QCSVCLDDFEIGMEAKEMPCKH 249

Query: 200 FYHRDCIVKWLETSHLCPLCRYAMP 225
            +H DC++ WLE    CP+CRY +P
Sbjct: 250 KFHSDCLLPWLELHSSCPVCRYLLP 270

[Close]
BLAST of CmoCh04G024750 vs. TAIR10
Match: AT3G02340.1 (AT3G02340.1 RING/U-box superfamily protein)

HSP 1 Score: 73.2 bits (178), Expect = 2.4e-13
Identity = 34/73 (46.58%), Postives = 48/73 (65.75%), Query Frame = 1 

Query: 154 PASESAIEGLKTVEIDVGGELLIGE--CRICLDELMNGMEVTRLPCAHFYHRDCIVKWLE 213
           PA++S I+ L  VE+ V  EL  G   C +C DE++   +V RLPC+HFYH +CI+ WL 
Sbjct: 309 PAAKSVIQDLPVVELAVE-ELDKGNNVCAVCKDEMLVEEKVRRLPCSHFYHGECIIPWLG 368

Query: 214 TSHLCPLCRYAMP 225
             + CP+CRY +P
Sbjct: 369 IRNTCPVCRYELP 380

[Close]
BLAST of CmoCh04G024750 vs. TAIR10
Match: AT5G64920.1 (AT5G64920.1 COP1-interacting protein 8)

HSP 1 Score: 72.4 bits (176), Expect = 4.0e-13
Identity = 30/70 (42.86%), Postives = 44/70 (62.86%), Query Frame = 1 

Query: 154 PASESAIEGLKTVEIDVGGELLIGECRICLDELMNGMEVTRLPCAHFYHRDCIVKWLETS 213
           PA++SAIE L+T E+      ++  C +C D ++ G    +LPC H YH DCIV WL T 
Sbjct: 232 PAAKSAIEALETFEVSSSEGEMVMVCAVCKDGMVMGETGKKLPCGHCYHGDCIVPWLGTR 291

Query: 214 HLCPLCRYAM 224
           + CP+CR+ +
Sbjct: 292 NSCPVCRFQL 301

[Close]
BLAST of CmoCh04G024750 vs. NCBI nr
Match: gi|449465461|ref|XP_004150446.1| (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis sativus])

HSP 1 Score: 412.5 bits (1059), Expect = 4.6e-112
Identity = 201/226 (88.94%), Postives = 208/226 (92.04%), Query Frame = 1 

Query: 1   MAMDTLYDYQIWQPEEHEDDVNVTISNSHLLPCDCFLFHLHFRHVLQSNHPQELQRLLNS 60
           MAMDTLYDY IWQPEE EDD+NVTISNSHLLPC+CFLFHLHFRH+LQSNH Q+   LLNS
Sbjct: 1   MAMDTLYDYHIWQPEEGEDDLNVTISNSHLLPCNCFLFHLHFRHILQSNHSQQFHYLLNS 60

Query: 61  SLSSFLIPCDAFFASGFSILIAVFSDTGVAQDFLDAAVPDVLSVAADIACNPLNAGRRVL 120
           SLSSFLIPCD FFA+  SILIAVFS TGVAQDFLD AVPDVLSVAADIACNPLNAGR +L
Sbjct: 61  SLSSFLIPCDVFFATASSILIAVFSGTGVAQDFLDTAVPDVLSVAADIACNPLNAGRTIL 120

Query: 121 PLAVSVLAVSPYNEREEIGRVLRESSPQEFKTSPASESAIEGLKTVEIDVGGELLIGECR 180
           PLAVSVL VSPYNER+EIGRVLRESSPQ FKT PASE AIEGLK VEIDVGGELLIGECR
Sbjct: 121 PLAVSVLVVSPYNERQEIGRVLRESSPQAFKTLPASEMAIEGLKKVEIDVGGELLIGECR 180

Query: 181 ICLDELMNGMEVTRLPCAHFYHRDCIVKWLETSHLCPLCRYAMPLS 227
           ICLDELMNGMEVTRLPCAH YHRDCIVKWLETSHLCPLCRYAMPLS
Sbjct: 181 ICLDELMNGMEVTRLPCAHLYHRDCIVKWLETSHLCPLCRYAMPLS 226

[Close]
BLAST of CmoCh04G024750 vs. NCBI nr
Match: gi|659133409|ref|XP_008466716.1| (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo])

HSP 1 Score: 400.6 bits (1028), Expect = 1.8e-108
Identity = 194/226 (85.84%), Postives = 205/226 (90.71%), Query Frame = 1 

Query: 1   MAMDTLYDYQIWQPEEHEDDVNVTISNSHLLPCDCFLFHLHFRHVLQSNHPQELQRLLNS 60
           MAMDTLYDY IWQPEE EDD+NVTISNSHLLPC+CFLFHLHFRH+LQSNH Q+   LLNS
Sbjct: 1   MAMDTLYDYHIWQPEEGEDDLNVTISNSHLLPCNCFLFHLHFRHILQSNHSQQSHYLLNS 60

Query: 61  SLSSFLIPCDAFFASGFSILIAVFSDTGVAQDFLDAAVPDVLSVAADIACNPLNAGRRVL 120
           SLSS+LIPCD FFA+  SILIAVFS TGVAQDFLD AVPDVLSVAADIACNPLNAGR +L
Sbjct: 61  SLSSYLIPCDVFFATASSILIAVFSGTGVAQDFLDTAVPDVLSVAADIACNPLNAGRTIL 120

Query: 121 PLAVSVLAVSPYNEREEIGRVLRESSPQEFKTSPASESAIEGLKTVEIDVGGELLIGECR 180
           PL VSVL VSPYNER+EIG+VLRESSPQ FKT PASE AIE LK VEI VGGELLIGECR
Sbjct: 121 PLTVSVLVVSPYNERQEIGQVLRESSPQAFKTLPASEMAIEDLKNVEIGVGGELLIGECR 180

Query: 181 ICLDELMNGMEVTRLPCAHFYHRDCIVKWLETSHLCPLCRYAMPLS 227
           ICLDEL+NGME+TRLPCAH YHRDCIVKWLETSHLCPLCRYAMPLS
Sbjct: 181 ICLDELVNGMEITRLPCAHLYHRDCIVKWLETSHLCPLCRYAMPLS 226

[Close]
BLAST of CmoCh04G024750 vs. NCBI nr
Match: gi|645225559|ref|XP_008219633.1| (PREDICTED: E3 ubiquitin-protein ligase RNF181-like [Prunus mume])

HSP 1 Score: 202.2 bits (513), Expect = 9.5e-49
Identity = 103/222 (46.40%), Postives = 143/222 (64.41%), Query Frame = 1 

Query: 3   MDTLYDYQIWQPEEHEDDVNVTISNSHLLPCDCFLFHLHFRHVLQSNHPQELQRLLNSSL 62
           M+T+Y Y I Q E      N  +  +HLL CDCF+FHL F H L+   PQ+L   LNS  
Sbjct: 1   METIYQYSISQVERQ----NQVLPTTHLLACDCFIFHLDFTHQLKLCFPQDLNIPLNSIQ 60

Query: 63  SSFLIPCDAFFASGFSILIAVFSDTGVAQDFLDAAVPDVLSVAADIACNPLNAGRRVLPL 122
            SF +P D FF+     +  V S +GV+ DF+   +P+V S A D+A  P NAG RV+PL
Sbjct: 61  ESFFVPFDVFFSHTQETIQTVLSGSGVSMDFVHVLLPEVHSFAMDVAQEPANAGPRVVPL 120

Query: 123 AVSVLAVSPYNEREEIGRVLRESSPQEFKTSPASESAIEGLKTVEIDVGGELLIGECRIC 182
            ++VLAV+P+++R++I R + ES  Q F   PA++S+I GLK V+ID     +  EC IC
Sbjct: 121 VLAVLAVTPFDDRDQIERAIMESG-QVFNPVPAAKSSIAGLKKVKID--NLSVTKECSIC 180

Query: 183 LDELMNGMEVTRLPCAHFYHRDCIVKWLETSHLCPLCRYAMP 225
           L+E   G+EV  +PC+H YH+DCIV+WL+ SHLCP CR+ +P
Sbjct: 181 LEEFSAGLEVVLMPCSHLYHKDCIVEWLKRSHLCPYCRFKLP 215

[Close]
BLAST of CmoCh04G024750 vs. NCBI nr
Match: gi|596235776|ref|XP_007224385.1| (hypothetical protein PRUPE_ppa021670mg [Prunus persica])

HSP 1 Score: 199.5 bits (506), Expect = 6.2e-48
Identity = 101/222 (45.50%), Postives = 143/222 (64.41%), Query Frame = 1 

Query: 3   MDTLYDYQIWQPEEHEDDVNVTISNSHLLPCDCFLFHLHFRHVLQSNHPQELQRLLNSSL 62
           M+T+Y Y I Q E+     N  +  +HLL CDCF+F L F H L+   PQ+L   LNS  
Sbjct: 1   METIYQYSISQVEQQ----NQVLPTTHLLACDCFIFRLDFTHQLKLCFPQDLNIPLNSIQ 60

Query: 63  SSFLIPCDAFFASGFSILIAVFSDTGVAQDFLDAAVPDVLSVAADIACNPLNAGRRVLPL 122
            SF +P D FF+     +  V S +GV+ DF+   +P+V S A D+A  P NAG R++PL
Sbjct: 61  ESFFVPFDVFFSHTQETIQTVLSGSGVSMDFVHVLLPEVHSFAMDVAQEPANAGPRIVPL 120

Query: 123 AVSVLAVSPYNEREEIGRVLRESSPQEFKTSPASESAIEGLKTVEIDVGGELLIGECRIC 182
            ++VLAV+P+++R++I R + ES  Q F   PA++S+I GLK V+ID     +  EC IC
Sbjct: 121 VLAVLAVTPFDDRDQIERAIMESG-QVFNPVPAAKSSIAGLKKVKID--NLSVTKECSIC 180

Query: 183 LDELMNGMEVTRLPCAHFYHRDCIVKWLETSHLCPLCRYAMP 225
           L+E   G+EV  +PC+H YH+DCIV+WL+ SHLCP CR+ +P
Sbjct: 181 LEEFSAGLEVVLMPCSHLYHKDCIVEWLKRSHLCPYCRFKLP 215

[Close]
BLAST of CmoCh04G024750 vs. NCBI nr
Match: gi|470112968|ref|XP_004292700.1| (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 192.6 bits (488), Expect = 7.6e-46
Identity = 99/225 (44.00%), Postives = 141/225 (62.67%), Query Frame = 1 

Query: 3   MDTLYDYQIWQPEEHEDDVNVTISNSHLLPCDCFLFHLHFRHVLQSNHPQELQRLLNSSL 62
           M+TLY Y I+Q E+     N    N+ LL CDCF+F+LHF H LQ  +PQ +   LNS  
Sbjct: 1   METLYQYSIYQEEQ-----NHAFPNTQLLSCDCFIFNLHFTHQLQLYYPQHVFIPLNSIQ 60

Query: 63  SSFLIPCDAFFASGFSILIAVFSDTGVAQDFLDAAVPDVLSVAADIACNPLNAG---RRV 122
            SF +PC+ FF      +  + S TGV+ DF++A VP+V S A D+A    N      +V
Sbjct: 61  ESFFVPCNVFFTHTHDTINTILSGTGVSLDFIEALVPEVYSFALDVATVFENGDPDEHKV 120

Query: 123 LPLAVSVLAVSPYNEREEIGRVLRESSPQEFKTSPASESAIEGLKTVEIDVGGELLIGEC 182
           +P  + V+AV+PY++ ++I R + ES  Q F   PA+ S+I  LK V+++     ++ EC
Sbjct: 121 VPFNLGVVAVTPYDDHDQIERAIWESG-QVFNPVPATRSSIAALKKVKVE--NLSVVNEC 180

Query: 183 RICLDELMNGMEVTRLPCAHFYHRDCIVKWLETSHLCPLCRYAMP 225
            ICL+E   G+EV  +PC H YH+DCIV+WL+ SHLCPLCR++MP
Sbjct: 181 SICLEEFSTGLEVIGMPCNHVYHKDCIVEWLKRSHLCPLCRFSMP 217

The following BLAST results are available for this feature:
BLAST of CmoCh04G024750 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RING1_GOSHI8.1e-1636.52E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1[more]
RNG1L_ARATH1.8e-1538.04E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1... [more]
CIP8_ARATH7.1e-1242.86E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana GN=CIP8 PE=1 SV=1[more]
RDUF2_ARATH6.0e-1136.44E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana GN=DURF2 PE=1 SV=1[more]
RN126_XENTR4.3e-0939.73E3 ubiquitin-protein ligase RNF126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1[more]
BLAST of CmoCh04G024750 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KDU3_CUCSA3.2e-11288.94Uncharacterized protein OS=Cucumis sativus GN=Csa_6G385070 PE=4 SV=1[more]
M5XI10_PRUPE4.3e-4845.50Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021670mg PE=4 SV=1[more]
B9RJ35_RICCO2.1e-3939.38Zinc finger protein, putative OS=Ricinus communis GN=RCOM_1030640 PE=4 SV=1[more]
B9GU33_POPTR4.8e-3943.96Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s08360g PE=4 SV=2[more]
A0A0D2U3Q8_GOSRA1.1e-2742.60Uncharacterized protein OS=Gossypium raimondii GN=B456_008G153700 PE=4 SV=1[more]
BLAST of CmoCh04G024750 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G19950.11.0e-1638.04 RING/U-box superfamily protein[more]
AT1G55530.15.6e-1542.17 RING/U-box superfamily protein[more]
AT3G13430.11.8e-1338.82 RING/U-box superfamily protein[more]
AT3G02340.12.4e-1346.58 RING/U-box superfamily protein[more]
AT5G64920.14.0e-1342.86 COP1-interacting protein 8[more]
BLAST of CmoCh04G024750 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449465461|ref|XP_004150446.1|4.6e-11288.94PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis sativus][more]
gi|659133409|ref|XP_008466716.1|1.8e-10885.84PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo][more]
gi|645225559|ref|XP_008219633.1|9.5e-4946.40PREDICTED: E3 ubiquitin-protein ligase RNF181-like [Prunus mume][more]
gi|596235776|ref|XP_007224385.1|6.2e-4845.50hypothetical protein PRUPE_ppa021670mg [Prunus persica][more]
gi|470112968|ref|XP_004292700.1|7.6e-4644.00PREDICTED: E3 ubiquitin-protein ligase RING1-like [Fragaria vesca subsp. vesca][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR011016Znf_RING-CH
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0016874 ligase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G024750.1CmoCh04G024750.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 178..220
score: 6.7
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 179..219
score: 6.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 179..220
score: 12
IPR011016Zinc finger, RING-CH-typeSMARTSM00744ringv_2coord: 178..220
score: 0.
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 178..222
score: 1.3
NoneNo IPR availablePANTHERPTHR22763RING ZINC FINGER PROTEINcoord: 134..224
score: 3.7
NoneNo IPR availablePANTHERPTHR22763:SF46PROTEIN SAN1coord: 134..224
score: 3.7
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 178..224
score: 6.86

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh04G024750Cucsa.188140Cucumber (Gy14) v1cgycmoB0548
CmoCh04G024750CmaCh15G006740Cucurbita maxima (Rimu)cmacmoB309
CmoCh04G024750CmaCh04G023640Cucurbita maxima (Rimu)cmacmoB729
CmoCh04G024750Cla013937Watermelon (97103) v1cmowmB661
CmoCh04G024750Csa6G385070Cucumber (Chinese Long) v2cmocuB761
CmoCh04G024750MELO3C010617Melon (DHL92) v3.5.1cmomeB672
CmoCh04G024750ClCG08G005710Watermelon (Charleston Gray)cmowcgB680
CmoCh04G024750CSPI06G20370Wild cucumber (PI 183967)cmocpiB770
CmoCh04G024750Lsi08G004370Bottle gourd (USVL1VR-Ls)cmolsiB697
CmoCh04G024750Cp4.1LG13g04620Cucurbita pepo (Zucchini)cmocpeB657
CmoCh04G024750MELO3C010617.2Melon (DHL92) v3.6.1cmomedB760
CmoCh04G024750CsaV3_6G034420Cucumber (Chinese Long) v3cmocucB0900
CmoCh04G024750Cla97C08G148490Watermelon (97103) v2cmowmbB760
CmoCh04G024750Bhi04G001515Wax gourdcmowgoB0865
CmoCh04G024750CsGy6G019820Cucumber (Gy14) v2cgybcmoB817
CmoCh04G024750Carg01534Silver-seed gourdcarcmoB1121
CmoCh04G024750Carg24436Silver-seed gourdcarcmoB0604
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh04G024750CmoCh15G006860Cucurbita moschata (Rifu)cmocmoB262
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G024750Cucumber (Chinese Long) v3cmocucB0835
CmoCh04G024750Watermelon (97103) v2cmowmbB701
CmoCh04G024750Wax gourdcmowgoB0915
CmoCh04G024750Cucurbita moschata (Rifu)cmocmoB030
CmoCh04G024750Cucurbita moschata (Rifu)cmocmoB366
CmoCh04G024750Cucurbita maxima (Rimu)cmacmoB059
CmoCh04G024750Cucurbita maxima (Rimu)cmacmoB482
CmoCh04G024750Wild cucumber (PI 183967)cmocpiB718
CmoCh04G024750Cucumber (Chinese Long) v2cmocuB708
CmoCh04G024750Melon (DHL92) v3.5.1cmomeB698
CmoCh04G024750Watermelon (Charleston Gray)cmowcgB626
CmoCh04G024750Watermelon (97103) v1cmowmB726
CmoCh04G024750Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G024750Cucurbita pepo (Zucchini)cmocpeB697
CmoCh04G024750Cucurbita pepo (Zucchini)cmocpeB709
CmoCh04G024750Bottle gourd (USVL1VR-Ls)cmolsiB664
CmoCh04G024750Cucumber (Gy14) v2cgybcmoB523
CmoCh04G024750Melon (DHL92) v3.6.1cmomedB792
CmoCh04G024750Silver-seed gourdcarcmoB0926