Carg24436 (gene) Silver-seed gourd

Overview
NameCarg24436
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionE3 ubiquitin-protein ligase RING1-like
LocationCucurbita_argyrosperma_scaffold_353 : 75568 .. 76248 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGATGGATACTCTCTACGACTACCAAATATGGCAACCTGAAGAACACGAAGATGACGTTAATGTTACCATTTCCAATTCTCACTTGCTTCCATGTGACTGTTTCCTTTTCCACCTTCACTTTCGCCATGTTCTCCAGTCAAATAATCCTCAAGAATTACAGAGACTCCTAAATTCGTCTCTATCTTCGTTCTTGATACCTTGTGATGCATTTTTCGCCAGTGGCTTCAGTATCCTGATCGCGGTTTTCTCCGACACCGGCGTCGCTCAAGACTTCTTGGACGCGGCGGTACCGGACGTTCTGTCCGTCGCGGCCGATATAGCATGCAATCCTCTTAATGCTGGCCGTCGGGTACTTCCGTTGGCGGTGTCCGTTTTGGCCGTTTCGCCGTACAATGAACGCGAGGAAATTGGGCGAGTTTTGCGGGAATCGTCGCCGCAAGCGTTTAAAACGTCGCCGGCTAGTGAGTCGGCAATCGAAGGGTTGAAGACGGTGGAGATTGATGTCGGCGGAGAGTTGTTGATTGGAGAATGCAGAATATGTTTGGATGAACTAATGAACGGAATGGAAGTTACGCGATTGCCGTGCGCTCATTTTTACCACAGAGACTGTATCGTCAAATGGCTGGAGACGAGTCATTTGTGCCCGTTGTGTCGCTACGCAATGCCACTGAGCTGA

mRNA sequence

ATGGCGATGGATACTCTCTACGACTACCAAATATGGCAACCTGAAGAACACGAAGATGACGTTAATGTTACCATTTCCAATTCTCACTTGCTTCCATGTGACTGTTTCCTTTTCCACCTTCACTTTCGCCATGTTCTCCAGTCAAATAATCCTCAAGAATTACAGAGACTCCTAAATTCGTCTCTATCTTCGTTCTTGATACCTTGTGATGCATTTTTCGCCAGTGGCTTCAGTATCCTGATCGCGGTTTTCTCCGACACCGGCGTCGCTCAAGACTTCTTGGACGCGGCGGTACCGGACGTTCTGTCCGTCGCGGCCGATATAGCATGCAATCCTCTTAATGCTGGCCGTCGGGTACTTCCGTTGGCGGTGTCCGTTTTGGCCGTTTCGCCGTACAATGAACGCGAGGAAATTGGGCGAGTTTTGCGGGAATCGTCGCCGCAAGCGTTTAAAACGTCGCCGGCTAGTGAGTCGGCAATCGAAGGGTTGAAGACGGTGGAGATTGATGTCGGCGGAGAGTTGTTGATTGGAGAATGCAGAATATGTTTGGATGAACTAATGAACGGAATGGAAGTTACGCGATTGCCGTGCGCTCATTTTTACCACAGAGACTGTATCGTCAAATGGCTGGAGACGAGTCATTTGTGCCCGTTGTGTCGCTACGCAATGCCACTGAGCTGA

Coding sequence (CDS)

ATGGCGATGGATACTCTCTACGACTACCAAATATGGCAACCTGAAGAACACGAAGATGACGTTAATGTTACCATTTCCAATTCTCACTTGCTTCCATGTGACTGTTTCCTTTTCCACCTTCACTTTCGCCATGTTCTCCAGTCAAATAATCCTCAAGAATTACAGAGACTCCTAAATTCGTCTCTATCTTCGTTCTTGATACCTTGTGATGCATTTTTCGCCAGTGGCTTCAGTATCCTGATCGCGGTTTTCTCCGACACCGGCGTCGCTCAAGACTTCTTGGACGCGGCGGTACCGGACGTTCTGTCCGTCGCGGCCGATATAGCATGCAATCCTCTTAATGCTGGCCGTCGGGTACTTCCGTTGGCGGTGTCCGTTTTGGCCGTTTCGCCGTACAATGAACGCGAGGAAATTGGGCGAGTTTTGCGGGAATCGTCGCCGCAAGCGTTTAAAACGTCGCCGGCTAGTGAGTCGGCAATCGAAGGGTTGAAGACGGTGGAGATTGATGTCGGCGGAGAGTTGTTGATTGGAGAATGCAGAATATGTTTGGATGAACTAATGAACGGAATGGAAGTTACGCGATTGCCGTGCGCTCATTTTTACCACAGAGACTGTATCGTCAAATGGCTGGAGACGAGTCATTTGTGCCCGTTGTGTCGCTACGCAATGCCACTGAGCTGA

Protein sequence

MAMDTLYDYQIWQPEEHEDDVNVTISNSHLLPCDCFLFHLHFRHVLQSNNPQELQRLLNSSLSSFLIPCDAFFASGFSILIAVFSDTGVAQDFLDAAVPDVLSVAADIACNPLNAGRRVLPLAVSVLAVSPYNEREEIGRVLRESSPQAFKTSPASESAIEGLKTVEIDVGGELLIGECRICLDELMNGMEVTRLPCAHFYHRDCIVKWLETSHLCPLCRYAMPLS
Homology
[Close]
BLAST of Carg24436 vs. NCBI nr
Match: XP_023554199.1 (probable E3 ubiquitin-protein ligase ATL45 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 458.4 bits (1178), Expect = 1.4e-125
Identity = 224/226 (99.12%), Postives = 226/226 (100.00%), Query Frame = 0 

Query: 1   MAMDTLYDYQIWQPEEHEDDVNVTISNSHLLPCDCFLFHLHFRHVLQSNNPQELQRLLNS 60
           MAMDTLYDYQIWQPEEHEDD+NVTISNSHLLPCDCFLFHLHFRHVLQSN+PQELQRLLNS
Sbjct: 1   MAMDTLYDYQIWQPEEHEDDINVTISNSHLLPCDCFLFHLHFRHVLQSNHPQELQRLLNS 60

Query: 61  SLSSFLIPCDAFFASGFSILIAVFSDTGVAQDFLDAAVPDVLSVAADIACNPLNAGRRVL 120
           SLSSFLIPCDAFFASGFSILIAVFSDTGVAQDFLDAAVPDVLSVAADIACNPLNAGRRVL
Sbjct: 61  SLSSFLIPCDAFFASGFSILIAVFSDTGVAQDFLDAAVPDVLSVAADIACNPLNAGRRVL 120

Query: 121 PLAVSVLAVSPYNEREEIGRVLRESSPQAFKTSPASESAIEGLKTVEIDVGGELLIGECR 180
           PLAVSVLAVSPYNEREEIGRVLRESSPQAFKTSPASESAIEGLKTVEIDVGGELLIGECR
Sbjct: 121 PLAVSVLAVSPYNEREEIGRVLRESSPQAFKTSPASESAIEGLKTVEIDVGGELLIGECR 180

Query: 181 ICLDELMNGMEVTRLPCAHFYHRDCIVKWLETSHLCPLCRYAMPLS 227
           ICLDELMNGMEVTRLPCAHFYHRDCIVKWLETSHLCPLCRYAMPLS
Sbjct: 181 ICLDELMNGMEVTRLPCAHFYHRDCIVKWLETSHLCPLCRYAMPLS 226

[Close]
BLAST of Carg24436 vs. NCBI nr
Match: XP_022963379.1 (probable E3 ubiquitin-protein ligase ATL45 [Cucurbita moschata] >XP_022963389.1 probable E3 ubiquitin-protein ligase ATL45 [Cucurbita moschata])

HSP 1 Score: 456.8 bits (1174), Expect = 4.2e-125
Identity = 224/226 (99.12%), Postives = 225/226 (99.56%), Query Frame = 0 

Query: 1   MAMDTLYDYQIWQPEEHEDDVNVTISNSHLLPCDCFLFHLHFRHVLQSNNPQELQRLLNS 60
           MAMDTLYDYQIWQPEEHEDDVNVTISNSHLLPCDCFLFHLHFRHVLQSN+PQELQRLLNS
Sbjct: 1   MAMDTLYDYQIWQPEEHEDDVNVTISNSHLLPCDCFLFHLHFRHVLQSNHPQELQRLLNS 60

Query: 61  SLSSFLIPCDAFFASGFSILIAVFSDTGVAQDFLDAAVPDVLSVAADIACNPLNAGRRVL 120
           SLSSFLIPCDAFFASGFSILIAVFSDTGVAQDFLDAAVPDVLSVAADIACNPLNAGRRVL
Sbjct: 61  SLSSFLIPCDAFFASGFSILIAVFSDTGVAQDFLDAAVPDVLSVAADIACNPLNAGRRVL 120

Query: 121 PLAVSVLAVSPYNEREEIGRVLRESSPQAFKTSPASESAIEGLKTVEIDVGGELLIGECR 180
           PLAVSVLAVSPYNEREEIGRVLRESSPQ FKTSPASESAIEGLKTVEIDVGGELLIGECR
Sbjct: 121 PLAVSVLAVSPYNEREEIGRVLRESSPQEFKTSPASESAIEGLKTVEIDVGGELLIGECR 180

Query: 181 ICLDELMNGMEVTRLPCAHFYHRDCIVKWLETSHLCPLCRYAMPLS 227
           ICLDELMNGMEVTRLPCAHFYHRDCIVKWLETSHLCPLCRYAMPLS
Sbjct: 181 ICLDELMNGMEVTRLPCAHFYHRDCIVKWLETSHLCPLCRYAMPLS 226

[Close]
BLAST of Carg24436 vs. NCBI nr
Match: XP_022990569.1 (probable E3 ubiquitin-protein ligase ATL45 [Cucurbita maxima] >XP_022990570.1 probable E3 ubiquitin-protein ligase ATL45 [Cucurbita maxima])

HSP 1 Score: 456.4 bits (1173), Expect = 5.5e-125
Identity = 224/226 (99.12%), Postives = 225/226 (99.56%), Query Frame = 0 

Query: 1   MAMDTLYDYQIWQPEEHEDDVNVTISNSHLLPCDCFLFHLHFRHVLQSNNPQELQRLLNS 60
           MAMDTLYDYQIWQPEEHEDDVNVTISNSHLLPCDCFLFHLHFRHVLQSN+PQELQRLLNS
Sbjct: 1   MAMDTLYDYQIWQPEEHEDDVNVTISNSHLLPCDCFLFHLHFRHVLQSNHPQELQRLLNS 60

Query: 61  SLSSFLIPCDAFFASGFSILIAVFSDTGVAQDFLDAAVPDVLSVAADIACNPLNAGRRVL 120
           SLSSFLIPCDAFFASGFSILIAVFSDTGVAQDFLDAAVPDVLSVAADIACNPLNAGRRVL
Sbjct: 61  SLSSFLIPCDAFFASGFSILIAVFSDTGVAQDFLDAAVPDVLSVAADIACNPLNAGRRVL 120

Query: 121 PLAVSVLAVSPYNEREEIGRVLRESSPQAFKTSPASESAIEGLKTVEIDVGGELLIGECR 180
           PLAVSVLAVSPYNEREEIGRVLRESSPQAFKTSPASESAIEGLKTVEIDVGGELLIGECR
Sbjct: 121 PLAVSVLAVSPYNEREEIGRVLRESSPQAFKTSPASESAIEGLKTVEIDVGGELLIGECR 180

Query: 181 ICLDELMNGMEVTRLPCAHFYHRDCIVKWLETSHLCPLCRYAMPLS 227
           ICLDELMNGMEVTRLPCAH YHRDCIVKWLETSHLCPLCRYAMPLS
Sbjct: 181 ICLDELMNGMEVTRLPCAHLYHRDCIVKWLETSHLCPLCRYAMPLS 226

[Close]
BLAST of Carg24436 vs. NCBI nr
Match: XP_004150446.1 (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis sativus] >KGN47723.1 hypothetical protein Csa_6G385070 [Cucumis sativus])

HSP 1 Score: 412.5 bits (1059), Expect = 9.0e-112
Identity = 201/226 (88.94%), Postives = 209/226 (92.48%), Query Frame = 0 

Query: 1   MAMDTLYDYQIWQPEEHEDDVNVTISNSHLLPCDCFLFHLHFRHVLQSNNPQELQRLLNS 60
           MAMDTLYDY IWQPEE EDD+NVTISNSHLLPC+CFLFHLHFRH+LQSN+ Q+   LLNS
Sbjct: 1   MAMDTLYDYHIWQPEEGEDDLNVTISNSHLLPCNCFLFHLHFRHILQSNHSQQFHYLLNS 60

Query: 61  SLSSFLIPCDAFFASGFSILIAVFSDTGVAQDFLDAAVPDVLSVAADIACNPLNAGRRVL 120
           SLSSFLIPCD FFA+  SILIAVFS TGVAQDFLD AVPDVLSVAADIACNPLNAGR +L
Sbjct: 61  SLSSFLIPCDVFFATASSILIAVFSGTGVAQDFLDTAVPDVLSVAADIACNPLNAGRTIL 120

Query: 121 PLAVSVLAVSPYNEREEIGRVLRESSPQAFKTSPASESAIEGLKTVEIDVGGELLIGECR 180
           PLAVSVL VSPYNER+EIGRVLRESSPQAFKT PASE AIEGLK VEIDVGGELLIGECR
Sbjct: 121 PLAVSVLVVSPYNERQEIGRVLRESSPQAFKTLPASEMAIEGLKKVEIDVGGELLIGECR 180

Query: 181 ICLDELMNGMEVTRLPCAHFYHRDCIVKWLETSHLCPLCRYAMPLS 227
           ICLDELMNGMEVTRLPCAH YHRDCIVKWLETSHLCPLCRYAMPLS
Sbjct: 181 ICLDELMNGMEVTRLPCAHLYHRDCIVKWLETSHLCPLCRYAMPLS 226

[Close]
BLAST of Carg24436 vs. NCBI nr
Match: XP_008466716.1 (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo])

HSP 1 Score: 400.6 bits (1028), Expect = 3.6e-108
Identity = 194/226 (85.84%), Postives = 206/226 (91.15%), Query Frame = 0 

Query: 1   MAMDTLYDYQIWQPEEHEDDVNVTISNSHLLPCDCFLFHLHFRHVLQSNNPQELQRLLNS 60
           MAMDTLYDY IWQPEE EDD+NVTISNSHLLPC+CFLFHLHFRH+LQSN+ Q+   LLNS
Sbjct: 1   MAMDTLYDYHIWQPEEGEDDLNVTISNSHLLPCNCFLFHLHFRHILQSNHSQQSHYLLNS 60

Query: 61  SLSSFLIPCDAFFASGFSILIAVFSDTGVAQDFLDAAVPDVLSVAADIACNPLNAGRRVL 120
           SLSS+LIPCD FFA+  SILIAVFS TGVAQDFLD AVPDVLSVAADIACNPLNAGR +L
Sbjct: 61  SLSSYLIPCDVFFATASSILIAVFSGTGVAQDFLDTAVPDVLSVAADIACNPLNAGRTIL 120

Query: 121 PLAVSVLAVSPYNEREEIGRVLRESSPQAFKTSPASESAIEGLKTVEIDVGGELLIGECR 180
           PL VSVL VSPYNER+EIG+VLRESSPQAFKT PASE AIE LK VEI VGGELLIGECR
Sbjct: 121 PLTVSVLVVSPYNERQEIGQVLRESSPQAFKTLPASEMAIEDLKNVEIGVGGELLIGECR 180

Query: 181 ICLDELMNGMEVTRLPCAHFYHRDCIVKWLETSHLCPLCRYAMPLS 227
           ICLDEL+NGME+TRLPCAH YHRDCIVKWLETSHLCPLCRYAMPLS
Sbjct: 181 ICLDELVNGMEITRLPCAHLYHRDCIVKWLETSHLCPLCRYAMPLS 226

[Close]
BLAST of Carg24436 vs. TAIR10
Match: AT3G19950.1 (RING/U-box superfamily protein)

HSP 1 Score: 84.3 bits (207), Expect = 1.0e-16
Identity = 36/92 (39.13%), Postives = 62/92 (67.39%), Query Frame = 0 

Query: 136 EEIGRVLRESSPQAFKTSPASESAIEGLKTVEIDVGGELL---IGECRICLDELMNGMEV 195
           E++ + L E+ P  + T PAS+SAI+ L TV+  V  ++L   + +C +C+DE  +G +V
Sbjct: 172 EQLIQQLAENDPNRYGTPPASKSAIDALPTVK--VTKDMLKSEMNQCAVCMDEFEDGSDV 231

Query: 196 TRLPCAHFYHRDCIVKWLETSHLCPLCRYAMP 225
            ++PC H +H+DC++ WLE  + CP+CR+ +P
Sbjct: 232 KQMPCKHVFHQDCLLPWLELHNSCPVCRFELP 261

[Close]
BLAST of Carg24436 vs. TAIR10
Match: AT1G55530.1 (RING/U-box superfamily protein)

HSP 1 Score: 78.6 bits (192), Expect = 5.6e-15
Identity = 35/83 (42.17%), Postives = 50/83 (60.24%), Query Frame = 0 

Query: 142 LRESSPQAFKTSPASESAIEGLKTVEIDVGGELLIGECRICLDELMNGMEVTRLPCAHFY 201
           L E+ P  + T PA + A+E L TV+I+   E L  +C +CLD+   G E   +PC H +
Sbjct: 191 LAENDPNRYGTPPAKKEAVEALATVKIE---ETL--QCSVCLDDFEIGTEAKLMPCTHKF 250

Query: 202 HRDCIVKWLETSHLCPLCRYAMP 225
           H DC++ WLE    CP+CRY +P
Sbjct: 251 HSDCLLPWLELHSSCPVCRYQLP 268

[Close]
BLAST of Carg24436 vs. TAIR10
Match: AT3G13430.1 (RING/U-box superfamily protein)

HSP 1 Score: 73.9 bits (180), Expect = 1.4e-13
Identity = 32/75 (42.67%), Postives = 47/75 (62.67%), Query Frame = 0 

Query: 150 FKTSPASESAIEGLKTVEIDVGGELLIGECRICLDELMNGMEVTRLPCAHFYHRDCIVKW 209
           + T PA++ A+E L  V+I+    LL  +C +CLD+   GME   +PC H +H DC++ W
Sbjct: 200 YGTPPATKEAVEALAMVKIE--DSLL--QCSVCLDDFEIGMEAKEMPCKHKFHSDCLLPW 259

Query: 210 LETSHLCPLCRYAMP 225
           LE    CP+CRY +P
Sbjct: 260 LELHSSCPVCRYLLP 270

[Close]
BLAST of Carg24436 vs. TAIR10
Match: AT3G02340.1 (RING/U-box superfamily protein)

HSP 1 Score: 73.2 bits (178), Expect = 2.4e-13
Identity = 34/73 (46.58%), Postives = 48/73 (65.75%), Query Frame = 0 

Query: 154 PASESAIEGLKTVEIDVGGELLIGE--CRICLDELMNGMEVTRLPCAHFYHRDCIVKWLE 213
           PA++S I+ L  VE+ V  EL  G   C +C DE++   +V RLPC+HFYH +CI+ WL 
Sbjct: 309 PAAKSVIQDLPVVELAV-EELDKGNNVCAVCKDEMLVEEKVRRLPCSHFYHGECIIPWLG 368

Query: 214 TSHLCPLCRYAMP 225
             + CP+CRY +P
Sbjct: 369 IRNTCPVCRYELP 380

[Close]
BLAST of Carg24436 vs. TAIR10
Match: AT5G15820.1 (RING/U-box superfamily protein)

HSP 1 Score: 72.4 bits (176), Expect = 4.0e-13
Identity = 31/74 (41.89%), Postives = 47/74 (63.51%), Query Frame = 0 

Query: 152 TSPASESAIEGLKTVEIDVGGELLIG-ECRICLDELMNGMEVTRLPCAHFYHRDCIVKWL 211
           T PAS+S ++GL  VE+ +     +   C IC DE++   +V RLPC H+YH +CI+ WL
Sbjct: 263 TPPASKSVVDGLPDVELTIEELSSVSIVCAICKDEVVFKEKVKRLPCKHYYHGECIIPWL 322

Query: 212 ETSHLCPLCRYAMP 225
              + CP+CR+ +P
Sbjct: 323 GIRNTCPVCRHELP 336

[Close]
BLAST of Carg24436 vs. Swiss-Prot
Match: sp|P0CH30|RING1_GOSHI (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 8.3e-16
Identity = 42/115 (36.52%), Postives = 64/115 (55.65%), Query Frame = 0 

Query: 111 NPLNAGRRVLPLAVSVLAVSPYNEREEIGRVLRESSPQAFKTSPASESAIEGLKTVEIDV 170
           NP + G R LP  +    + P    E++ + L E+ P  + T PAS+SAIE L  V I  
Sbjct: 158 NPSDQGFR-LPANIGDYFIGP--GLEQLIQQLAENDPNRYGTPPASKSAIEALPLVNITK 217

Query: 171 GG-ELLIGECRICLDELMNGMEVTRLPCAHFYHRDCIVKWLETSHLCPLCRYAMP 225
                   +C +C+D+   G E  ++PC H YH+DC++ WLE  + CP+CR+ +P
Sbjct: 218 SNLNSEFNQCAVCMDDFEEGTEAKQMPCKHLYHKDCLLPWLELHNSCPVCRHELP 269

[Close]
BLAST of Carg24436 vs. Swiss-Prot
Match: sp|Q8LPN7|RNG1L_ARATH (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.8e-15
Identity = 36/92 (39.13%), Postives = 62/92 (67.39%), Query Frame = 0 

Query: 136 EEIGRVLRESSPQAFKTSPASESAIEGLKTVEIDVGGELL---IGECRICLDELMNGMEV 195
           E++ + L E+ P  + T PAS+SAI+ L TV+  V  ++L   + +C +C+DE  +G +V
Sbjct: 172 EQLIQQLAENDPNRYGTPPASKSAIDALPTVK--VTKDMLKSEMNQCAVCMDEFEDGSDV 231

Query: 196 TRLPCAHFYHRDCIVKWLETSHLCPLCRYAMP 225
            ++PC H +H+DC++ WLE  + CP+CR+ +P
Sbjct: 232 KQMPCKHVFHQDCLLPWLELHNSCPVCRFELP 261

[Close]
BLAST of Carg24436 vs. Swiss-Prot
Match: sp|Q6AVN2|SIRP1_ORYSJ (E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SIRP1 PE=1 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.1e-12
Identity = 33/83 (39.76%), Postives = 48/83 (57.83%), Query Frame = 0 

Query: 142 LRESSPQAFKTSPASESAIEGLKTVEIDVGGELLIGECRICLDELMNGMEVTRLPCAHFY 201
           L ES P    T PA + A+E L TV+I+      +  C +CLD+L  G +  ++PC H +
Sbjct: 167 LAESDPSRNGTPPAKKEAVEALPTVKIEE-----VVSCSVCLDDLEVGSQAKQMPCEHKF 226

Query: 202 HRDCIVKWLETSHLCPLCRYAMP 225
           H  CI+ WLE    CP+CR+ +P
Sbjct: 227 HSSCILPWLELHSSCPVCRFELP 244

[Close]
BLAST of Carg24436 vs. Swiss-Prot
Match: sp|Q9SNB6|RDUF1_ARATH (E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana OX=3702 GN=RDUF1 PE=1 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 9.5e-12
Identity = 42/115 (36.52%), Postives = 61/115 (53.04%), Query Frame = 0 

Query: 115 AGRRVLPLAVSVLAVSPYNER--EEIGRVLRESSPQAFKTS---PASESAIEGLKTVEID 174
           +G R LP +VS + +    ER  E++ ++  E+S      S   PAS+SAIE L  VEI 
Sbjct: 148 SGLRPLPDSVSEILMGSGFERLLEQLSQI--EASGNGIGRSGNPPASKSAIESLPRVEIS 207

Query: 175 VGGELLIGECRICLDELMNGMEVTRLPCAHFYHRDCIVKWLETSHLCPLCRYAMP 225
                    C +C +    G+E   +PC H +H DCIV WL   + CP+CR+ +P
Sbjct: 208 DCHTKAEANCAVCTEVFEAGIEGREMPCKHIFHGDCIVPWLSIRNSCPVCRFELP 260

[Close]
BLAST of Carg24436 vs. Swiss-Prot
Match: sp|Q940T5|RDUF2_ARATH (E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.8e-11
Identity = 43/118 (36.44%), Postives = 62/118 (52.54%), Query Frame = 0 

Query: 115 AGRRVLPLAVSVLAVSPYNER--EEIGRVLRESSPQAFKTS---PASESAIEGLKTVEID 174
           +G R LP +VS + +    ER  E++ ++  E+S      S   PAS+SAIE L  VEI 
Sbjct: 132 SGLRPLPDSVSEILMGSGFERLLEQLSQI--EASATGIGRSGNPPASKSAIESLPRVEIS 191

Query: 175 ---VGGELLIGECRICLDELMNGMEVTRLPCAHFYHRDCIVKWLETSHLCPLCRYAMP 225
              +G E     C +C +      E   +PC H +H DCIV WL   + CP+CR+ +P
Sbjct: 192 DCHIGSE---ANCAVCTEIFETETEAREMPCKHLFHDDCIVPWLSIRNSCPVCRFELP 244

[Close]
BLAST of Carg24436 vs. TrEMBL
Match: tr|A0A0A0KDU3|A0A0A0KDU3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G385070 PE=4 SV=1)

HSP 1 Score: 412.5 bits (1059), Expect = 6.0e-112
Identity = 201/226 (88.94%), Postives = 209/226 (92.48%), Query Frame = 0 

Query: 1   MAMDTLYDYQIWQPEEHEDDVNVTISNSHLLPCDCFLFHLHFRHVLQSNNPQELQRLLNS 60
           MAMDTLYDY IWQPEE EDD+NVTISNSHLLPC+CFLFHLHFRH+LQSN+ Q+   LLNS
Sbjct: 1   MAMDTLYDYHIWQPEEGEDDLNVTISNSHLLPCNCFLFHLHFRHILQSNHSQQFHYLLNS 60

Query: 61  SLSSFLIPCDAFFASGFSILIAVFSDTGVAQDFLDAAVPDVLSVAADIACNPLNAGRRVL 120
           SLSSFLIPCD FFA+  SILIAVFS TGVAQDFLD AVPDVLSVAADIACNPLNAGR +L
Sbjct: 61  SLSSFLIPCDVFFATASSILIAVFSGTGVAQDFLDTAVPDVLSVAADIACNPLNAGRTIL 120

Query: 121 PLAVSVLAVSPYNEREEIGRVLRESSPQAFKTSPASESAIEGLKTVEIDVGGELLIGECR 180
           PLAVSVL VSPYNER+EIGRVLRESSPQAFKT PASE AIEGLK VEIDVGGELLIGECR
Sbjct: 121 PLAVSVLVVSPYNERQEIGRVLRESSPQAFKTLPASEMAIEGLKKVEIDVGGELLIGECR 180

Query: 181 ICLDELMNGMEVTRLPCAHFYHRDCIVKWLETSHLCPLCRYAMPLS 227
           ICLDELMNGMEVTRLPCAH YHRDCIVKWLETSHLCPLCRYAMPLS
Sbjct: 181 ICLDELMNGMEVTRLPCAHLYHRDCIVKWLETSHLCPLCRYAMPLS 226

[Close]
BLAST of Carg24436 vs. TrEMBL
Match: tr|A0A1S3CS28|A0A1S3CS28_CUCME (E3 ubiquitin-protein ligase RING1-like OS=Cucumis melo OX=3656 GN=LOC103504063 PE=4 SV=1)

HSP 1 Score: 400.6 bits (1028), Expect = 2.3e-108
Identity = 194/226 (85.84%), Postives = 206/226 (91.15%), Query Frame = 0 

Query: 1   MAMDTLYDYQIWQPEEHEDDVNVTISNSHLLPCDCFLFHLHFRHVLQSNNPQELQRLLNS 60
           MAMDTLYDY IWQPEE EDD+NVTISNSHLLPC+CFLFHLHFRH+LQSN+ Q+   LLNS
Sbjct: 1   MAMDTLYDYHIWQPEEGEDDLNVTISNSHLLPCNCFLFHLHFRHILQSNHSQQSHYLLNS 60

Query: 61  SLSSFLIPCDAFFASGFSILIAVFSDTGVAQDFLDAAVPDVLSVAADIACNPLNAGRRVL 120
           SLSS+LIPCD FFA+  SILIAVFS TGVAQDFLD AVPDVLSVAADIACNPLNAGR +L
Sbjct: 61  SLSSYLIPCDVFFATASSILIAVFSGTGVAQDFLDTAVPDVLSVAADIACNPLNAGRTIL 120

Query: 121 PLAVSVLAVSPYNEREEIGRVLRESSPQAFKTSPASESAIEGLKTVEIDVGGELLIGECR 180
           PL VSVL VSPYNER+EIG+VLRESSPQAFKT PASE AIE LK VEI VGGELLIGECR
Sbjct: 121 PLTVSVLVVSPYNERQEIGQVLRESSPQAFKTLPASEMAIEDLKNVEIGVGGELLIGECR 180

Query: 181 ICLDELMNGMEVTRLPCAHFYHRDCIVKWLETSHLCPLCRYAMPLS 227
           ICLDEL+NGME+TRLPCAH YHRDCIVKWLETSHLCPLCRYAMPLS
Sbjct: 181 ICLDELVNGMEITRLPCAHLYHRDCIVKWLETSHLCPLCRYAMPLS 226

[Close]
BLAST of Carg24436 vs. TrEMBL
Match: tr|M5XI10|M5XI10_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G495200 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 4.7e-48
Identity = 101/222 (45.50%), Postives = 143/222 (64.41%), Query Frame = 0 

Query: 3   MDTLYDYQIWQPEEHEDDVNVTISNSHLLPCDCFLFHLHFRHVLQSNNPQELQRLLNSSL 62
           M+T+Y Y I Q E+     N  +  +HLL CDCF+F L F H L+   PQ+L   LNS  
Sbjct: 1   METIYQYSISQVEQQ----NQVLPTTHLLACDCFIFRLDFTHQLKLCFPQDLNIPLNSIQ 60

Query: 63  SSFLIPCDAFFASGFSILIAVFSDTGVAQDFLDAAVPDVLSVAADIACNPLNAGRRVLPL 122
            SF +P D FF+     +  V S +GV+ DF+   +P+V S A D+A  P NAG R++PL
Sbjct: 61  ESFFVPFDVFFSHTQETIQTVLSGSGVSMDFVHVLLPEVHSFAMDVAQEPANAGPRIVPL 120

Query: 123 AVSVLAVSPYNEREEIGRVLRESSPQAFKTSPASESAIEGLKTVEIDVGGELLIGECRIC 182
            ++VLAV+P+++R++I R + ES  Q F   PA++S+I GLK V+ID     +  EC IC
Sbjct: 121 VLAVLAVTPFDDRDQIERAIMESG-QVFNPVPAAKSSIAGLKKVKID--NLSVTKECSIC 180

Query: 183 LDELMNGMEVTRLPCAHFYHRDCIVKWLETSHLCPLCRYAMP 225
           L+E   G+EV  +PC+H YH+DCIV+WL+ SHLCP CR+ +P
Sbjct: 181 LEEFSAGLEVVLMPCSHLYHKDCIVEWLKRSHLCPYCRFKLP 215

[Close]
BLAST of Carg24436 vs. TrEMBL
Match: tr|A0A2P6PX93|A0A2P6PX93_ROSCH (Putative aminoacyltransferase, E1 ubiquitin-activating enzyme OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0295911 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 2.6e-46
Identity = 101/225 (44.89%), Postives = 140/225 (62.22%), Query Frame = 0 

Query: 3   MDTLYDYQIWQPEEHEDDVNVTISNSHLLPCDCFLFHLHFRHVLQSNNPQELQRLLNSSL 62
           M+TLY Y I Q E+     N    N+ LL CDCF+F+LHF H LQ   PQ+L   LNS  
Sbjct: 1   METLYQYSICQEEQ-----NHAFPNTQLLSCDCFIFNLHFTHQLQLYYPQDLFIPLNSIQ 60

Query: 63  SSFLIPCDAFFASGFSILIAVFSDTGVAQDFLDAAVPDVLSVAADIACNPLNAG---RRV 122
            SF +PC+ FF      +  + S TGV+ DF+ A VP V S A +IA    N      + 
Sbjct: 61  ESFFVPCNVFFTHTHDTINTILSGTGVSLDFIQALVPQVYSFALEIATEFENGDPDEPKA 120

Query: 123 LPLAVSVLAVSPYNEREEIGRVLRESSPQAFKTSPASESAIEGLKTVEIDVGGELLIGEC 182
           +PL + V+AV+PY++ ++I R + ES  Q F   PA+ S+I  LK V+++     ++ EC
Sbjct: 121 VPLNLGVVAVTPYDDHDQIERAIWESG-QVFNPVPATRSSIAALKKVKVE--NLSVVNEC 180

Query: 183 RICLDELMNGMEVTRLPCAHFYHRDCIVKWLETSHLCPLCRYAMP 225
            ICL+E   G+EV R+PC+H YH+DCIV+WL+ SHLCPLCR++MP
Sbjct: 181 SICLEEFSTGLEVIRMPCSHVYHKDCIVEWLKRSHLCPLCRFSMP 217

[Close]
BLAST of Carg24436 vs. TrEMBL
Match: tr|B9RJ35|B9RJ35_RICCO (Zinc finger protein, putative OS=Ricinus communis OX=3988 GN=RCOM_1030640 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 8.8e-39
Identity = 92/226 (40.71%), Postives = 135/226 (59.73%), Query Frame = 0 

Query: 3   MDTLYDYQIWQPEEHEDDVNVTISNSHLLPCDCFLFHLHFRHVLQSNNPQELQRLLNSSL 62
           M + Y+Y +WQ      D N   SN   + CD F   +HF HVL+ + P+  Q  + ++ 
Sbjct: 1   MASTYEYYMWQ------DFNNKDSNDIDVDCDIFDIQIHFHHVLEIHYPESNQIPVTTTH 60

Query: 63  SSFLIPCDAFFASG----FSILIAVFSDTGVAQDFLDAAVPDVLSVAADIACNPLNAGRR 122
            SF IP +  F+S      SI+ A+ S T  ++DF+D  +P+V S A ++A +P N   +
Sbjct: 61  RSFPIPRNLIFSSDDQSRSSIMDAILSTTAASRDFIDLILPEVSSFALEMATHPSNKNVK 120

Query: 123 VLPLAVSVLAVSPYNEREEIGRVLRESSPQAFKTSPASESAIEGLKTVEIDVGGELLIGE 182
           VL + + +  V+PY+EREEI R L E+  +  +  PAS+S IEGLK V ID   + + GE
Sbjct: 121 VLTMGLLICVVTPYDEREEIDRALGETIQEKARFKPASKSCIEGLKRVRIDKDDDKISGE 180

Query: 183 -CRICLDELMNGMEVTRLPCAHFYHRDCIVKWLETSHLCPLCRYAM 224
            C +CL++   G  V RL C H +H DCIVKWL T+HLCPLCR+++
Sbjct: 181 TCMVCLEKESVGEVVIRLACGHVFHEDCIVKWLHTNHLCPLCRFSI 220

The following BLAST results are available for this feature:
BLAST of Carg24436 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_023554199.11.4e-12599.12probable E3 ubiquitin-protein ligase ATL45 [Cucurbita pepo subsp. pepo][more]
XP_022963379.14.2e-12599.12probable E3 ubiquitin-protein ligase ATL45 [Cucurbita moschata] >XP_022963389.1 ... [more]
XP_022990569.15.5e-12599.12probable E3 ubiquitin-protein ligase ATL45 [Cucurbita maxima] >XP_022990570.1 pr... [more]
XP_004150446.19.0e-11288.94PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis sativus] >KGN47723.1 ... [more]
XP_008466716.13.6e-10885.84PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo][more]
BLAST of Carg24436 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G19950.11.0e-1639.13RING/U-box superfamily protein[more]
AT1G55530.15.6e-1542.17RING/U-box superfamily protein[more]
AT3G13430.11.4e-1342.67RING/U-box superfamily protein[more]
AT3G02340.12.4e-1346.58RING/U-box superfamily protein[more]
AT5G15820.14.0e-1341.89RING/U-box superfamily protein[more]
BLAST of Carg24436 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P0CH30|RING1_GOSHI8.3e-1636.52E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV... [more]
sp|Q8LPN7|RNG1L_ARATH1.8e-1539.13E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19... [more]
sp|Q6AVN2|SIRP1_ORYSJ1.1e-1239.76E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SI... [more]
sp|Q9SNB6|RDUF1_ARATH9.5e-1236.52E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana OX=3702 GN=RDUF1 PE=1 ... [more]
sp|Q940T5|RDUF2_ARATH2.8e-1136.44E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 ... [more]
BLAST of Carg24436 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KDU3|A0A0A0KDU3_CUCSA6.0e-11288.94Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G385070 PE=4 SV=1[more]
tr|A0A1S3CS28|A0A1S3CS28_CUCME2.3e-10885.84E3 ubiquitin-protein ligase RING1-like OS=Cucumis melo OX=3656 GN=LOC103504063 P... [more]
tr|M5XI10|M5XI10_PRUPE4.7e-4845.50Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G495200 PE=4 SV=1[more]
tr|A0A2P6PX93|A0A2P6PX93_ROSCH2.6e-4644.89Putative aminoacyltransferase, E1 ubiquitin-activating enzyme OS=Rosa chinensis ... [more]
tr|B9RJ35|B9RJ35_RICCO8.8e-3940.71Zinc finger protein, putative OS=Ricinus communis OX=3988 GN=RCOM_1030640 PE=4 S... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
IPR011016Znf_RING-CH
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg24436-RACarg24436-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011016Zinc finger, RING-CH-typeSMARTSM00744ringv_2coord: 178..220
e-value: 0.0013
score: 14.9
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 179..219
e-value: 6.1E-7
score: 39.1
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 178..220
e-value: 1.2E-13
score: 51.1
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 179..220
score: 12.829
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 142..225
e-value: 1.7E-19
score: 71.2
NoneNo IPR availablePANTHERPTHR44679FAMILY NOT NAMEDcoord: 137..224
NoneNo IPR availablePANTHERPTHR44679:SF3SUBFAMILY NOT NAMEDcoord: 137..224
NoneNo IPR availableSUPERFAMILYSSF57850RING/U-boxcoord: 166..224

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg24436Cla013937Watermelon (97103) v1carwmB0445
Carg24436Csa6G385070Cucumber (Chinese Long) v2carcuB0478
Carg24436MELO3C010617Melon (DHL92) v3.5.1carmeB0451
Carg24436ClCG08G005710Watermelon (Charleston Gray)carwcgB0438
Carg24436CSPI06G20370Wild cucumber (PI 183967)carcpiB0483
Carg24436Cucsa.188140Cucumber (Gy14) v1carcgyB0515
Carg24436CmaCh04G023640Cucurbita maxima (Rimu)carcmaB0621
Carg24436CmaCh15G006740Cucurbita maxima (Rimu)carcmaB0620
Carg24436CmoCh15G006860Cucurbita moschata (Rifu)carcmoB0603
Carg24436CmoCh04G024750Cucurbita moschata (Rifu)carcmoB0604
Carg24436Lsi08G004370Bottle gourd (USVL1VR-Ls)carlsiB407
Carg24436Cp4.1LG13g04620Cucurbita pepo (Zucchini)carcpeB0626
Carg24436CsGy6G019820Cucumber (Gy14) v2carcgybB0456
Carg24436MELO3C010617.2Melon (DHL92) v3.6.1carmedB0454
Carg24436CsaV3_6G034420Cucumber (Chinese Long) v3carcucB0480
Carg24436Cla97C08G148490Watermelon (97103) v2carwmbB0469
Carg24436Bhi04G001515Wax gourdcarwgoB0538
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg24436Carg01534Silver-seed gourdcarcarB451
The following block(s) are covering this gene:
GeneOrganismBlock
Carg24436Watermelon (97103) v2carwmbB0468
Carg24436Wax gourdcarwgoB0540
Carg24436Cucumber (Gy14) v2carcgybB0455
Carg24436Cucurbita maxima (Rimu)carcmaB0619
Carg24436Cucurbita moschata (Rifu)carcmoB0602
Carg24436Cucurbita pepo (Zucchini)carcpeB0627
Carg24436Cucurbita pepo (Zucchini)carcpeB0628
Carg24436Wild cucumber (PI 183967)carcpiB0482
Carg24436Cucumber (Chinese Long) v2carcuB0477
Carg24436Cucumber (Chinese Long) v3carcucB0479
Carg24436Bottle gourd (USVL1VR-Ls)carlsiB406
Carg24436Melon (DHL92) v3.5.1carmeB0452
Carg24436Melon (DHL92) v3.6.1carmedB0455
Carg24436Watermelon (Charleston Gray)carwcgB0437
Carg24436Watermelon (97103) v1carwmB0446