CmoCh04G019880 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G019880
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Small subunit rib
Location	Cmo_Chr04 : 10296137 .. 10297729 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGGGGAGAGAGAGAGAGAGAGAGAGATTAAACCCTAGCTCCTCCCTCTTCAACCTCCACCATTCCGCTTGGTTGAAGCCCTAGCAGAGAGCATACCATGGTCCACGTCTCTTTCTACAGGAACTGTGAGTATGCTCAACTTACCATCTATTATTTCCTTTCAATTTCTTCTCTTAATTGCTTCATTTCAATCTGGGAACCTACGGTTTCATCACATTAAATTGCACAATCTCAGATTTTCTAGGGTTAGATTCTTGTAGCTCAATACATTTTTACGACTGTTTTAAGCGGGAACTGGATGCCATTGTAAGTTTCACTTTCTGGACTCGACCTTCTAGGGTGTTATAAAATCAACGACGATATTGGGTGTAAATGATACAGAAAATGTTTGAAAAACAATAATGCTTGGGTGATGTTTGCTTCTTCATGCTTTTATATAGACCCAGGATCATTGAATTGTGGATTTATCATTATGTAGATGGGAAGACCTTCAAAAAACCTCGGCGCCCTTATGAGAAGGAGCGTCTGGATGCAGAGCTCAAACTTGTAGGTGAATATGGGCTTCGTTGTAAAAGAGAGCTATGGCGTGTTCAATATGCATTGAGCCGAATCCGAAATAATGCCAGGATGCTTTTGACGCTTGATGAAAAGAATCCACGAAGAATTTTTGAGGGAGAGGCCCTGCTTAGGAGGATGAACAGGTATGGTCTTTTGGATGAAAGTCAAAACAAGCTCGATTATGTCTTGGCACTTACTGTTGAGAATTTCCTTGAGCGTCGTCTCCAAACCCTTGTGTTCAAGTCTGGAATGGCAAAATCTATCCACCACGCTAGAGTGCTCATCAGGCAGAAGCATATAAGGTAGGGTGCCTCACTATCCATCTTTTTCCCAGAATGAAATAGAGTTCATCGTTCTAGTTCATGATGATGCTCAATACATAGCACATTTTTCTTCTTTGCCTTGATAGGGTAGGGAGGCAGGTAGTTAACATCCCCTCTTTCATGGTGAGGGTTGATTCCCAAAAGCACATAGATTTCTCTCTCACAAGTCCATTTGGAGGCGGACGTCCTGGAAGGGTGAAGAGAAAGAACCAGAAGGCGGCTGCGAAAAAGGCTGCTGGCGGAGATGGAGATGAAGAAGAAGAGGATTGAGCTGTGGGCTTAGTTAAAAGTAGTGTTTTACCTCAATTTTGTGTTGTCTGTGTTTTATTACGTCTTTTGAGCTTGTGTTTGGACTTCTACTTTGAGCTGTGACCGCCTTTTGAATCTACCCTGTATTTGTTATTGGCTCAATTGAAGGTCTCACCTGCCCTGGTTCTGTGTTCGAGTCATAGAAAATCTCGTGGGATGTAGGAGAACTCTTAAGTTGTTGGACTACATTGAGAAGACATGCAAGTTACGGTTCCTACAAAAGTAGAGTTTTTGCTTTCCTATTACTTATTTTCTTTTAATATTTTGGTTTCAACTAAGTCAATAAACATTACTGTTTGTCCTAAGCTTCCTAAGCTGTTCTCAGTGCTTATATTACGAAGATAAAGAGTTCTTCATTCCCTTTAATTCCTACTTCTCGCACTCCCTTTGTAGAGTTTTCCGA

mRNA sequence

AAGGGGAGAGAGAGAGAGAGAGAGAGATTAAACCCTAGCTCCTCCCTCTTCAACCTCCACCATTCCGCTTGGTTGAAGCCCTAGCAGAGAGCATACCATGGTCCACGTCTCTTTCTACAGGAACTATGGGAAGACCTTCAAAAAACCTCGGCGCCCTTATGAGAAGGAGCGTCTGGATGCAGAGCTCAAACTTGTAGGTGAATATGGGCTTCGTTGTAAAAGAGAGCTATGGCGTGTTCAATATGCATTGAGCCGAATCCGAAATAATGCCAGGATGCTTTTGACGCTTGATGAAAAGAATCCACGAAGAATTTTTGAGGGAGAGGCCCTGCTTAGGAGGATGAACAGGTATGGTCTTTTGGATGAAAGTCAAAACAAGCTCGATTATGTCTTGGCACTTACTGTTGAGAATTTCCTTGAGCGTCGTCTCCAAACCCTTGTGTTCAAGTCTGGAATGGCAAAATCTATCCACCACGCTAGAGTGCTCATCAGGCAGAAGCATATAAGGGTAGGGAGGCAGGTAGTTAACATCCCCTCTTTCATGGTGAGGGTTGATTCCCAAAAGCACATAGATTTCTCTCTCACAAGTCCATTTGGAGGCGGACGTCCTGGAAGGGTGAAGAGAAAGAACCAGAAGGCGGCTGCGAAAAAGGCTGCTGGCGGAGATGGAGATGAAGAAGAAGAGGATTGAGCTGTGGGCTTAGTTAAAAGTAGTGTTTTACCTCAATTTTGTGTTGTCTGTGTTTTATTACGTCTTTTGAGCTTGTGTTTGGACTTCTACTTTGAGCTGTGACCGCCTTTTGAATCTACCCTGTATTTGTTATTGGCTCAATTGAAGGTCTCACCTGCCCTGGTTCTGTGTTCGAGTCATAGAAAATCTCGTGGGATGTAGGAGAACTCTTAAGTTGTTGGACTACATTGAGAAGACATGCAAGTTACGGTTCCTACAAAAGTAGAGTTTTTGCTTTCCTATTACTTATTTTCTTTTAATATTTTGGTTTCAACTAAGTCAATAAACATTACTGTTTGTCCTAAGCTTCCTAAGCTGTTCTCAGTGCTTATATTACGAAGATAAAGAGTTCTTCATTCCCTTTAATTCCTACTTCTCGCACTCCCTTTGTAGAGTTTTCCGA

Coding sequence (CDS)

ATGGTCCACGTCTCTTTCTACAGGAACTATGGGAAGACCTTCAAAAAACCTCGGCGCCCTTATGAGAAGGAGCGTCTGGATGCAGAGCTCAAACTTGTAGGTGAATATGGGCTTCGTTGTAAAAGAGAGCTATGGCGTGTTCAATATGCATTGAGCCGAATCCGAAATAATGCCAGGATGCTTTTGACGCTTGATGAAAAGAATCCACGAAGAATTTTTGAGGGAGAGGCCCTGCTTAGGAGGATGAACAGGTATGGTCTTTTGGATGAAAGTCAAAACAAGCTCGATTATGTCTTGGCACTTACTGTTGAGAATTTCCTTGAGCGTCGTCTCCAAACCCTTGTGTTCAAGTCTGGAATGGCAAAATCTATCCACCACGCTAGAGTGCTCATCAGGCAGAAGCATATAAGGGTAGGGAGGCAGGTAGTTAACATCCCCTCTTTCATGGTGAGGGTTGATTCCCAAAAGCACATAGATTTCTCTCTCACAAGTCCATTTGGAGGCGGACGTCCTGGAAGGGTGAAGAGAAAGAACCAGAAGGCGGCTGCGAAAAAGGCTGCTGGCGGAGATGGAGATGAAGAAGAAGAGGATTGA

Homology

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BLAST of CmoCh04G019880 vs. Swiss-Prot
Match: RS92_ARATH (40S ribosomal protein S9-2 OS=Arabidopsis thaliana GN=RPS9C PE=1 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 7.4e-98
Identity = 178/197 (90.36%), Postives = 192/197 (97.46%), Query Frame = 1


Query: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60
           MV+V FYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQY LSRIRN AR 
Sbjct: 1   MVNVRFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYTLSRIRNAARE 60

Query: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120
           LLTLDEKNPRRIFEGEALLRRMNRYGLLDE+QNKLDYVLALTVENFLERRLQT+VFKSGM
Sbjct: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDETQNKLDYVLALTVENFLERRLQTIVFKSGM 120

Query: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK 180
           AKSIHHARVLIRQ+HIRVGRQ+VNIPSFMVRV+SQKH+DFSLTSPFGGGRPGRVKR+N++
Sbjct: 121 AKSIHHARVLIRQRHIRVGRQLVNIPSFMVRVESQKHVDFSLTSPFGGGRPGRVKRRNER 180

Query: 181 AAAKKAAGGDGDEEEED 198
           A AKKA+GGDGDE++E+
Sbjct: 181 AGAKKASGGDGDEDDEE 197

[Close]

BLAST of CmoCh04G019880 vs. Swiss-Prot
Match: RS91_ARATH (40S ribosomal protein S9-1 OS=Arabidopsis thaliana GN=RPS9B PE=1 SV=1)

HSP 1 Score: 342.0 bits (876), Expect = 4.2e-93
Identity = 173/198 (87.37%), Postives = 190/198 (95.96%), Query Frame = 1


Query: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60
           MVHV +YRNYGKTFK PRRPYEKERLD+ELKLVGEYGLR KRELWRVQY+LSRIRN AR 
Sbjct: 1   MVHVCYYRNYGKTFKGPRRPYEKERLDSELKLVGEYGLRNKRELWRVQYSLSRIRNAARD 60

Query: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120
           LLTLDEK+PRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQT+VFKSGM
Sbjct: 61  LLTLDEKSPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTIVFKSGM 120

Query: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK 180
           AKSIHH+RVLIRQ+HIRVG+Q+VNIPSFMVR+DSQKHIDF+LTSPFGGGRPGRVKR+N+K
Sbjct: 121 AKSIHHSRVLIRQRHIRVGKQLVNIPSFMVRLDSQKHIDFALTSPFGGGRPGRVKRRNEK 180

Query: 181 AAAKKAAGG---DGDEEE 196
           +A+KKA+GG   DGD+EE
Sbjct: 181 SASKKASGGGDADGDDEE 198

[Close]

BLAST of CmoCh04G019880 vs. Swiss-Prot
Match: RS9_PODAS (40S ribosomal protein S9 OS=Podospora anserina GN=RPS9 PE=3 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 4.5e-71
Identity = 138/190 (72.63%), Postives = 163/190 (85.79%), Query Frame = 1


Query: 8   RNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEK 67
           R+Y KT K PRRP+E  RLD+ELKLVGEYGLR KRE+WRV   LS+IR  AR LLTLDEK
Sbjct: 4   RSYSKTAKVPRRPFEAARLDSELKLVGEYGLRNKREVWRVLLTLSKIRRAARELLTLDEK 63

Query: 68  NPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHA 127
           +P+R+FEG AL+RR+ R G+LDES+ KLDYVLAL  E+FLERRLQTLV+K G+AKSIHHA
Sbjct: 64  DPKRLFEGNALIRRLVRVGVLDESRMKLDYVLALKAEDFLERRLQTLVYKLGLAKSIHHA 123

Query: 128 RVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKAA 187
           RVLIRQ+HIRVG+Q+VN+PSF+VR+DSQKHIDF+LTSPFGGGRPGRV+RK     AK A 
Sbjct: 124 RVLIRQRHIRVGKQIVNVPSFVVRLDSQKHIDFALTSPFGGGRPGRVRRKK----AKAAE 183

Query: 188 GGDGDEEEED 198
           GGDGD EE++
Sbjct: 184 GGDGDAEEDE 189

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BLAST of CmoCh04G019880 vs. Swiss-Prot
Match: RS9_DROME (40S ribosomal protein S9 OS=Drosophila melanogaster GN=RpS9 PE=1 SV=2)

HSP 1 Score: 260.8 bits (665), Expect = 1.2e-68
Identity = 135/188 (71.81%), Postives = 158/188 (84.04%), Query Frame = 1


Query: 10  YGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNP 69
           + KT+  PRRPYEK RLD ELK++GEYGLR KRE+WRV+YAL++IR  AR LLTLDEK+ 
Sbjct: 10  FSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDEKDE 69

Query: 70  RRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARV 129
           +R+F+G ALLRR+ R G+LDES+ KLDYVL L +E+FLERRLQT VFK G+AKSIHHARV
Sbjct: 70  KRLFQGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARV 129

Query: 130 LIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKAAGG 189
           LIRQ+HIRV +QVVNIPSF+VR+DSQKHIDFSL SPFGGGRPGRVKRKN K    +  GG
Sbjct: 130 LIRQRHIRVRKQVVNIPSFVVRLDSQKHIDFSLKSPFGGGRPGRVKRKNLK--KNQGGGG 189

Query: 190 DGDEEEED 198
              EEEED
Sbjct: 190 GAAEEEED 195

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BLAST of CmoCh04G019880 vs. Swiss-Prot
Match: RS9_PAPAN (40S ribosomal protein S9 OS=Papio anubis GN=RPS9 PE=3 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 1.6e-68
Identity = 133/186 (71.51%), Postives = 157/186 (84.41%), Query Frame = 1


Query: 12  KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNPRR 71
           KT+  PRRP+EK RLD ELKL+GEYGLR KRE+WRV++ L++IR  AR LLTLDEK+PRR
Sbjct: 11  KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRR 70

Query: 72  IFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLI 131
           +FEG ALLRR+ R G+LDE + KLDY+L L +E+FLERRLQT VFK G+AKSIHHARVLI
Sbjct: 71  LFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLI 130

Query: 132 RQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKAAGGDG 191
           RQ+HIRV +QVVNIPSF+VR+DSQKHIDFSL SP+GGGRPGRVKRKN K    +   G G
Sbjct: 131 RQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKKG--QGGAGAG 190

Query: 192 DEEEED 198
           D+EEED
Sbjct: 191 DDEEED 194

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BLAST of CmoCh04G019880 vs. TrEMBL
Match: A0A0A0KSN1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G604980 PE=3 SV=1)

HSP 1 Score: 384.8 bits (987), Expect = 6.3e-104
Identity = 196/197 (99.49%), Postives = 197/197 (100.00%), Query Frame = 1


Query: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60
           MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM
Sbjct: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60

Query: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120
           LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM
Sbjct: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120

Query: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK 180
           AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK
Sbjct: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK 180

Query: 181 AAAKKAAGGDGDEEEED 198
           AAAKKAAGGDGDEE+ED
Sbjct: 181 AAAKKAAGGDGDEEDED 197

[Close]

BLAST of CmoCh04G019880 vs. TrEMBL
Match: W9QV98_9ROSA (40S ribosomal protein S9-2 OS=Morus notabilis GN=L484_006534 PE=3 SV=1)

HSP 1 Score: 380.2 bits (975), Expect = 1.6e-102
Identity = 194/197 (98.48%), Postives = 196/197 (99.49%), Query Frame = 1


Query: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60
           MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM
Sbjct: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60

Query: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120
           LLTLDEKNPRRIFEGEALLRRMNR+GLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM
Sbjct: 61  LLTLDEKNPRRIFEGEALLRRMNRHGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120

Query: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK 180
           AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK
Sbjct: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK 180

Query: 181 AAAKKAAGGDGDEEEED 198
           AAAKKAAGGDGD +EED
Sbjct: 181 AAAKKAAGGDGDGDEED 197

[Close]

BLAST of CmoCh04G019880 vs. TrEMBL
Match: D7FBA7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0108g00460 PE=3 SV=1)

HSP 1 Score: 377.5 bits (968), Expect = 1.0e-101
Identity = 191/197 (96.95%), Postives = 195/197 (98.98%), Query Frame = 1


Query: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60
           MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQY LSRIRNNARM
Sbjct: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYVLSRIRNNARM 60

Query: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120
           LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM
Sbjct: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120

Query: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK 180
           AKSIHHARVLIRQ+HIRVGRQVVNIPSF+VR+DSQKHIDFSLTSP GGGRPGRVKRKNQK
Sbjct: 121 AKSIHHARVLIRQRHIRVGRQVVNIPSFLVRMDSQKHIDFSLTSPLGGGRPGRVKRKNQK 180

Query: 181 AAAKKAAGGDGDEEEED 198
           AAAKKAAGGDGDEE+ED
Sbjct: 181 AAAKKAAGGDGDEEDED 197

[Close]

BLAST of CmoCh04G019880 vs. TrEMBL
Match: A0A059ARY5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I01938 PE=3 SV=1)

HSP 1 Score: 375.9 bits (964), Expect = 2.9e-101
Identity = 190/197 (96.45%), Postives = 195/197 (98.98%), Query Frame = 1


Query: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60
           MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQY LSRIRNNARM
Sbjct: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYVLSRIRNNARM 60

Query: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120
           LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM
Sbjct: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120

Query: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK 180
           AKSIHHARVLIRQ+HIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKN K
Sbjct: 121 AKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNTK 180

Query: 181 AAAKKAAGGDGDEEEED 198
           AA+KKA+GGDG+EE+ED
Sbjct: 181 AASKKASGGDGEEEDED 197

[Close]

BLAST of CmoCh04G019880 vs. TrEMBL
Match: A0A067K8C2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11609 PE=3 SV=1)

HSP 1 Score: 375.6 bits (963), Expect = 3.8e-101
Identity = 190/197 (96.45%), Postives = 196/197 (99.49%), Query Frame = 1


Query: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60
           MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRN ARM
Sbjct: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARM 60

Query: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120
           LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM
Sbjct: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120

Query: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK 180
           AKSIHHARVLIRQ+HIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQ+
Sbjct: 121 AKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQR 180

Query: 181 AAAKKAAGGDGDEEEED 198
           AA+KKA+GGDGDEE+E+
Sbjct: 181 AASKKASGGDGDEEDEE 197

[Close]

BLAST of CmoCh04G019880 vs. TAIR10
Match: AT5G39850.1 (AT5G39850.1 Ribosomal protein S4)

HSP 1 Score: 357.8 bits (917), Expect = 4.2e-99
Identity = 178/197 (90.36%), Postives = 192/197 (97.46%), Query Frame = 1


Query: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60
           MV+V FYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQY LSRIRN AR 
Sbjct: 1   MVNVRFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYTLSRIRNAARE 60

Query: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120
           LLTLDEKNPRRIFEGEALLRRMNRYGLLDE+QNKLDYVLALTVENFLERRLQT+VFKSGM
Sbjct: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDETQNKLDYVLALTVENFLERRLQTIVFKSGM 120

Query: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK 180
           AKSIHHARVLIRQ+HIRVGRQ+VNIPSFMVRV+SQKH+DFSLTSPFGGGRPGRVKR+N++
Sbjct: 121 AKSIHHARVLIRQRHIRVGRQLVNIPSFMVRVESQKHVDFSLTSPFGGGRPGRVKRRNER 180

Query: 181 AAAKKAAGGDGDEEEED 198
           A AKKA+GGDGDE++E+
Sbjct: 181 AGAKKASGGDGDEDDEE 197

[Close]

BLAST of CmoCh04G019880 vs. TAIR10
Match: AT5G15200.1 (AT5G15200.1 Ribosomal protein S4)

HSP 1 Score: 342.0 bits (876), Expect = 2.4e-94
Identity = 173/198 (87.37%), Postives = 190/198 (95.96%), Query Frame = 1


Query: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60
           MVHV +YRNYGKTFK PRRPYEKERLD+ELKLVGEYGLR KRELWRVQY+LSRIRN AR 
Sbjct: 1   MVHVCYYRNYGKTFKGPRRPYEKERLDSELKLVGEYGLRNKRELWRVQYSLSRIRNAARD 60

Query: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120
           LLTLDEK+PRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQT+VFKSGM
Sbjct: 61  LLTLDEKSPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTIVFKSGM 120

Query: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK 180
           AKSIHH+RVLIRQ+HIRVG+Q+VNIPSFMVR+DSQKHIDF+LTSPFGGGRPGRVKR+N+K
Sbjct: 121 AKSIHHSRVLIRQRHIRVGKQLVNIPSFMVRLDSQKHIDFALTSPFGGGRPGRVKRRNEK 180

Query: 181 AAAKKAAGG---DGDEEE 196
           +A+KKA+GG   DGD+EE
Sbjct: 181 SASKKASGGGDADGDDEE 198

[Close]

BLAST of CmoCh04G019880 vs. NCBI nr
Match: gi|449434792|ref|XP_004135180.1| (PREDICTED: 40S ribosomal protein S9-2 [Cucumis sativus])

HSP 1 Score: 384.8 bits (987), Expect = 9.0e-104
Identity = 196/197 (99.49%), Postives = 197/197 (100.00%), Query Frame = 1


Query: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60
           MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM
Sbjct: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60

Query: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120
           LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM
Sbjct: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120

Query: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK 180
           AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK
Sbjct: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK 180

Query: 181 AAAKKAAGGDGDEEEED 198
           AAAKKAAGGDGDEE+ED
Sbjct: 181 AAAKKAAGGDGDEEDED 197

[Close]

BLAST of CmoCh04G019880 vs. NCBI nr
Match: gi|719965609|ref|XP_010256989.1| (PREDICTED: 40S ribosomal protein S9-2-like [Nelumbo nucifera])

HSP 1 Score: 381.3 bits (978), Expect = 1.0e-102
Identity = 194/197 (98.48%), Postives = 196/197 (99.49%), Query Frame = 1


Query: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60
           MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM
Sbjct: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60

Query: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120
           LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM
Sbjct: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120

Query: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK 180
           AKSIHHARVLIRQ+HIRVGRQVVNIPSFMVRVDSQKHIDFSLTSP GGGRPGRVKRKNQK
Sbjct: 121 AKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPLGGGRPGRVKRKNQK 180

Query: 181 AAAKKAAGGDGDEEEED 198
           AAAKKAAGGDGDEE+ED
Sbjct: 181 AAAKKAAGGDGDEEDED 197

[Close]

BLAST of CmoCh04G019880 vs. NCBI nr
Match: gi|1009132749|ref|XP_015883538.1| (PREDICTED: 40S ribosomal protein S9-2 [Ziziphus jujuba])

HSP 1 Score: 381.3 bits (978), Expect = 1.0e-102
Identity = 193/197 (97.97%), Postives = 197/197 (100.00%), Query Frame = 1


Query: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60
           MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM
Sbjct: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60

Query: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120
           LLTLDEKNPRRIFEGEALLRRMNRYGLLDE+QNKLDYVLALTVENFLERRLQTLVFKSGM
Sbjct: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDENQNKLDYVLALTVENFLERRLQTLVFKSGM 120

Query: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK 180
           AKSIHHARVLIRQ+HIRVGRQVVNIPSFMVR+DSQKHIDFSLTSPFGGGRPGRVKRKNQK
Sbjct: 121 AKSIHHARVLIRQRHIRVGRQVVNIPSFMVRLDSQKHIDFSLTSPFGGGRPGRVKRKNQK 180

Query: 181 AAAKKAAGGDGDEEEED 198
           AAAKKAAGGDGDEE+ED
Sbjct: 181 AAAKKAAGGDGDEEDED 197

[Close]

BLAST of CmoCh04G019880 vs. NCBI nr
Match: gi|703079680|ref|XP_010091216.1| (40S ribosomal protein S9-2 [Morus notabilis])

HSP 1 Score: 380.2 bits (975), Expect = 2.2e-102
Identity = 194/197 (98.48%), Postives = 196/197 (99.49%), Query Frame = 1


Query: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60
           MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM
Sbjct: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60

Query: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120
           LLTLDEKNPRRIFEGEALLRRMNR+GLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM
Sbjct: 61  LLTLDEKNPRRIFEGEALLRRMNRHGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120

Query: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK 180
           AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK
Sbjct: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK 180

Query: 181 AAAKKAAGGDGDEEEED 198
           AAAKKAAGGDGD +EED
Sbjct: 181 AAAKKAAGGDGDGDEED 197

[Close]

BLAST of CmoCh04G019880 vs. NCBI nr
Match: gi|1009124995|ref|XP_015879372.1| (PREDICTED: 40S ribosomal protein S9-2 [Ziziphus jujuba])

HSP 1 Score: 379.0 bits (972), Expect = 5.0e-102
Identity = 191/197 (96.95%), Postives = 197/197 (100.00%), Query Frame = 1


Query: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60
           MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM
Sbjct: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60

Query: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120
           LLTLDEKNPRRIFEGEALLRRMNRYGLL+E+QNKLDYVLALTVENFLERRLQT+VFK+GM
Sbjct: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLEENQNKLDYVLALTVENFLERRLQTIVFKAGM 120

Query: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK 180
           AKSIHHARVLIRQ+HIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK
Sbjct: 121 AKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK 180

Query: 181 AAAKKAAGGDGDEEEED 198
           AAAKKAAGGDGDEE+ED
Sbjct: 181 AAAKKAAGGDGDEEDED 197

The following BLAST results are available for this feature:

BLAST of CmoCh04G019880 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RS92_ARATH	7.4e-98	90.36	40S ribosomal protein S9-2 OS=Arabidopsis thaliana GN=RPS9C PE=1 SV=1	[more]
RS91_ARATH	4.2e-93	87.37	40S ribosomal protein S9-1 OS=Arabidopsis thaliana GN=RPS9B PE=1 SV=1	[more]
RS9_PODAS	4.5e-71	72.63	40S ribosomal protein S9 OS=Podospora anserina GN=RPS9 PE=3 SV=1	[more]
RS9_DROME	1.2e-68	71.81	40S ribosomal protein S9 OS=Drosophila melanogaster GN=RpS9 PE=1 SV=2	[more]
RS9_PAPAN	1.6e-68	71.51	40S ribosomal protein S9 OS=Papio anubis GN=RPS9 PE=3 SV=1	[more]

BLAST of CmoCh04G019880 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KSN1_CUCSA	6.3e-104	99.49	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G604980 PE=3 SV=1	[more]
W9QV98_9ROSA	1.6e-102	98.48	40S ribosomal protein S9-2 OS=Morus notabilis GN=L484_006534 PE=3 SV=1	[more]
D7FBA7_VITVI	1.0e-101	96.95	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0108g00460 PE=3 SV=...	[more]
A0A059ARY5_EUCGR	2.9e-101	96.45	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I01938 PE=3 SV=1	[more]
A0A067K8C2_JATCU	3.8e-101	96.45	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11609 PE=3 SV=1	[more]

BLAST of CmoCh04G019880 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G39850.1	4.2e-99	90.36	Ribosomal protein S4	[more]
AT5G15200.1	2.4e-94	87.37	Ribosomal protein S4	[more]

BLAST of CmoCh04G019880 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449434792\|ref\|XP_004135180.1\|	9.0e-104	99.49	PREDICTED: 40S ribosomal protein S9-2 [Cucumis sativus]	[more]
gi\|719965609\|ref\|XP_010256989.1\|	1.0e-102	98.48	PREDICTED: 40S ribosomal protein S9-2-like [Nelumbo nucifera]	[more]
gi\|1009132749\|ref\|XP_015883538.1\|	1.0e-102	97.97	PREDICTED: 40S ribosomal protein S9-2 [Ziziphus jujuba]	[more]
gi\|703079680\|ref\|XP_010091216.1\|	2.2e-102	98.48	40S ribosomal protein S9-2 [Morus notabilis]	[more]
gi\|1009124995\|ref\|XP_015879372.1\|	5.0e-102	96.95	PREDICTED: 40S ribosomal protein S9-2 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001912	Ribosomal_S4/S9_N
IPR002942	S4_RNA-bd
IPR005710	Ribosomal_S4/S9_euk/arc
IPR018079	Ribosomal_S4_CS
IPR022801	Ribosomal_S4/S9

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0015935	small ribosomal subunit

Vocabulary: **Molecular Function**
Term	Definition
GO:0019843	rRNA binding
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0005622	intracellular
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G019880.1	CmoCh04G019880.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001912	Ribosomal protein S4/S9, N-terminal	PFAM	PF00163	Ribosomal_S4	coord: 8..64 score: 3.
IPR001912	Ribosomal protein S4/S9, N-terminal	SMART	SM01390	Ribosomal_S4_2	coord: 8..108 score: 6.8
IPR002942	RNA-binding S4 domain	GENE3D	G3DSA:3.10.290.10		coord: 108..155 score: 1.6
IPR002942	RNA-binding S4 domain	PFAM	PF01479	S4	coord: 109..152 score: 4.1
IPR002942	RNA-binding S4 domain	SMART	SM00363	s4_6	coord: 109..180 score: 2.
IPR002942	RNA-binding S4 domain	PROFILE	PS50889	S4	coord: 109..180 score: 11
IPR005710	Ribosomal protein S4/S9, eukaryotic/archaeal	TIGRFAMs	TIGR01018	TIGR01018	coord: 11..166 score: 1.9
IPR018079	Ribosomal protein S4, conserved site	PROSITE	PS00632	RIBOSOMAL_S4	coord: 107..131 scor
IPR022801	Ribosomal protein S4/S9	PANTHER	PTHR11831	30S 40S RIBOSOMAL PROTEIN	coord: 1..197 score: 1.9E
None	No IPR available	PANTHER	PTHR11831:SF13	SUBFAMILY NOT NAMED	coord: 1..197 score: 1.9E
None	No IPR available	unknown	SSF55174	Alpha-L RNA-binding motif	coord: 12..159 score: 3.83

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G019880	CmaCh04G018840	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G019880	Cp4.1LG01g16730	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G019880	Carg25918	Silver-seed gourd	carcmoB0317

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G019880	Watermelon (97103) v2	cmowmbB706
CmoCh04G019880	Wax gourd	cmowgoB0873
CmoCh04G019880	Wax gourd	cmowgoB0906
CmoCh04G019880	Wax gourd	cmowgoB0914
CmoCh04G019880	Wild cucumber (PI 183967)	cmocpiB764
CmoCh04G019880	Cucumber (Chinese Long) v2	cmocuB752
CmoCh04G019880	Melon (DHL92) v3.5.1	cmomeB639
CmoCh04G019880	Watermelon (Charleston Gray)	cmowcgB629
CmoCh04G019880	Watermelon (97103) v1	cmowmB733
CmoCh04G019880	Bottle gourd (USVL1VR-Ls)	cmolsiB623
CmoCh04G019880	Melon (DHL92) v3.6.1	cmomedB723