Carg25918 (gene) Silver-seed gourd

Overview
NameCarg25918
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Description40S ribosomal protein S9, putative
LocationCucurbita_argyrosperma_scaffold_282 : 193700 .. 195126 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCCACGTCTCTTTCTACAGGAACTGTGAGTATGCTCAACTTACCATCTATTATTTCCTTTCAATTTCTTCTCTTAATTGCTTCATTTCAATCTGGGAACCTACGGTTTCATCACATTAAATTGCACAATCTCAGATTTTCTAGGGTTAGATTCTTGTAGCTCAATACATTTTTACGACTGTTTTAAGCTGGAACTGGATGCCATTGTAAGTTTCACTTTCTGGACTCGACCTTCTTGGGTGTTATAAAATCAACGACGATATTGGGTGTAAATGTTACAGAAAAATGTTTGAAAAACAATAATGCTTGGGTGATGTTTGCTTCTTCATGCTTTTATATAGACCCAGGATCATTGAATTGTGGATTTATCATTATGTAGATGGGAAGACCTTCAAGAAACCTCGGCGCCCTTATGAGAAGGAGCGTCTGGATGCAGAGCTCAAACTTGTAGGTGAATATGGGCTTCGTTGTAAAAGAGAGCTATGGCGTGTTCAATATGCATTGAGCCGAATCCGAAATAATGCCAGGATGCTTTTGACGCTTGATGAAAAGAATCCACGAAGAATTTTTGAGGGAGAGGCCCTGCTTAGGAGGATGAACAGATATGGTCTTTTGGATGAAAGTCAAAACAAGCTCGATTATGTCTTGGCACTTACTGTCGAGAATTTCCTTGAGCGTCGTCTCCAAACCCTTGTGTTCAAGTCTGGAATGGCAAAATCTATCCACCACGCTAGAGTGCTCATCAGGCAGAAGCATATAAGGTAGGGTGCCTCACTATCCATCTTTTTCCCAGAATGAAATAGAGTTCATATACAGTTTAACTCAAATATATTGCTTGATTAATGCTTGTAAACAACATTTCTTCTGCCGTTTTGTTGCTTGCATCGTTCTAGTTCATGATGATGCTCAATACATAGCACATTTTTCTTCTTTACCTTGATAGGGTAGGGAGGCAGGTAGTTAACATCCCCTCTTTCATGGTGAGGGTTGATTCACAAAAGCACATAGATTTCTCTCTCACAAGTCCATTTGGAGGCGGACGTCCTGGAAGGGTGAAGAGAAAGAACCAGAAGGCGGCTGCGAAGAAGGCTGCTGGCGGAGATGGAGATGAAGAAGAAGAGGATTGAGCTGTGGGCTTAGTTAAAAGTAGTGTTTTACTTCAATTTTGTGTTGTCTGTGTTTTATTACGTCTTTTGAGCTTGTGTTTGGACTTCTACTTTGAGCTGTGACCGCCTTTTGTTTCTACCCTGTATTTGTTATTGGCTCAATTGGAGGTCTCACCCGCCCTGGTTTTGTGTTCGAGTCATAGAAAATCTCGTGGGATGTAGGAGAACTCTTAAGTTGTTGGACTACATTGAGAAGACATGCAAGCTACGGGTTCCTACAAAAGTACGAGTTTTTGCTTTCCTATTACTTATTTTCTT

mRNA sequence

ATGGTCCACGTCTCTTTCTACAGGAACTATGGGAAGACCTTCAAGAAACCTCGGCGCCCTTATGAGAAGGAGCGTCTGGATGCAGAGCTCAAACTTGTAGGTGAATATGGGCTTCGTTGTAAAAGAGAGCTATGGCGTGTTCAATATGCATTGAGCCGAATCCGAAATAATGCCAGGATGCTTTTGACGCTTGATGAAAAGAATCCACGAAGAATTTTTGAGGGAGAGGCCCTGCTTAGGAGGATGAACAGATATGGTCTTTTGGATGAAAGTCAAAACAAGCTCGATTATGTCTTGGCACTTACTGTCGAGAATTTCCTTGAGCGTCGTCTCCAAACCCTTGTGTTCAAGTCTGGAATGGCAAAATCTATCCACCACGCTAGAGTGCTCATCAGGCAGAAGCATATAAGGGTAGGGAGGCAGGTAGTTAACATCCCCTCTTTCATGGTGAGGGTTGATTCACAAAAGCACATAGATTTCTCTCTCACAAGTCCATTTGGAGGCGGACGTCCTGGAAGGGTGAAGAGAAAGAACCAGAAGGCGGCTGCGAAGAAGGCTGCTGGCGGAGATGGAGATGAAGAAGAAGAGGATTGAGCTGTGGGCTTAGTTAAAAGTAGTGTTTTACTTCAATTTTGTGTTGTCTGTGTTTTATTACGTCTTTTGAGCTTGTGTTTGGACTTCTACTTTGAGCTGTGACCGCCTTTTGTTTCTACCCTGTATTTGTTATTGGCTCAATTGGAGGTCTCACCCGCCCTGGTTTTGTGTTCGAGTCATAGAAAATCTCGTGGGATGTAGGAGAACTCTTAAGTTGTTGGACTACATTGAGAAGACATGCAAGCTACGGGTTCCTACAAAAGTACGAGTTTTTGCTTTCCTATTACTTATTTTCTT

Coding sequence (CDS)

ATGGTCCACGTCTCTTTCTACAGGAACTATGGGAAGACCTTCAAGAAACCTCGGCGCCCTTATGAGAAGGAGCGTCTGGATGCAGAGCTCAAACTTGTAGGTGAATATGGGCTTCGTTGTAAAAGAGAGCTATGGCGTGTTCAATATGCATTGAGCCGAATCCGAAATAATGCCAGGATGCTTTTGACGCTTGATGAAAAGAATCCACGAAGAATTTTTGAGGGAGAGGCCCTGCTTAGGAGGATGAACAGATATGGTCTTTTGGATGAAAGTCAAAACAAGCTCGATTATGTCTTGGCACTTACTGTCGAGAATTTCCTTGAGCGTCGTCTCCAAACCCTTGTGTTCAAGTCTGGAATGGCAAAATCTATCCACCACGCTAGAGTGCTCATCAGGCAGAAGCATATAAGGGTAGGGAGGCAGGTAGTTAACATCCCCTCTTTCATGGTGAGGGTTGATTCACAAAAGCACATAGATTTCTCTCTCACAAGTCCATTTGGAGGCGGACGTCCTGGAAGGGTGAAGAGAAAGAACCAGAAGGCGGCTGCGAAGAAGGCTGCTGGCGGAGATGGAGATGAAGAAGAAGAGGATTGA

Protein sequence

MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKAAGGDGDEEEED
Homology
[Close]
BLAST of Carg25918 vs. NCBI nr
Match: XP_004135180.1 (PREDICTED: 40S ribosomal protein S9-2 [Cucumis sativus] >XP_004141548.1 PREDICTED: 40S ribosomal protein S9-2 [Cucumis sativus] >XP_008446334.1 PREDICTED: 40S ribosomal protein S9-2 [Cucumis melo] >XP_008459594.1 PREDICTED: 40S ribosomal protein S9-2 [Cucumis melo] >XP_022957390.1 40S ribosomal protein S9-2-like [Cucurbita moschata] >XP_022925366.1 40S ribosomal protein S9-2-like [Cucurbita moschata] >XP_022987602.1 40S ribosomal protein S9-2-like [Cucurbita maxima] >XP_022973538.1 40S ribosomal protein S9-2-like [Cucurbita maxima] >XP_023552855.1 40S ribosomal protein S9-2-like [Cucurbita pepo subsp. pepo] >XP_023535520.1 40S ribosomal protein S9-2-like [Cucurbita pepo subsp. pepo] >KGN51904.1 hypothetical protein Csa_5G604980 [Cucumis sativus] >KGN52667.1 hypothetical protein Csa_5G649850 [Cucumis sativus])

HSP 1 Score: 351.7 bits (901), Expect = 1.6e-93
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0 

Query: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60
           MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM
Sbjct: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60

Query: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120
           LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM
Sbjct: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120

Query: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKR 177
           AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKR
Sbjct: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKR 176

[Close]
BLAST of Carg25918 vs. NCBI nr
Match: XP_018826572.1 (PREDICTED: 40S ribosomal protein S9-2-like [Juglans regia])

HSP 1 Score: 351.7 bits (901), Expect = 1.6e-93
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0 

Query: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60
           MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM
Sbjct: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60

Query: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120
           LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM
Sbjct: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120

Query: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKR 177
           AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKR
Sbjct: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKR 176

[Close]
BLAST of Carg25918 vs. NCBI nr
Match: XP_022944955.1 (40S ribosomal protein S9-2 [Cucurbita moschata] >XP_022968439.1 40S ribosomal protein S9-2 [Cucurbita maxima] >XP_022973398.1 40S ribosomal protein S9-2 [Cucurbita maxima] >XP_023525066.1 40S ribosomal protein S9-2 [Cucurbita pepo subsp. pepo] >XP_023541316.1 40S ribosomal protein S9-2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 351.7 bits (901), Expect = 1.6e-93
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0 

Query: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60
           MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM
Sbjct: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60

Query: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120
           LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM
Sbjct: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120

Query: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKR 177
           AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKR
Sbjct: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKR 176

[Close]
BLAST of Carg25918 vs. NCBI nr
Match: XP_022957492.1 (40S ribosomal protein S9-2-like [Cucurbita moschata] >XP_022998674.1 40S ribosomal protein S9-2-like [Cucurbita maxima] >XP_023515426.1 40S ribosomal protein S9-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 351.7 bits (901), Expect = 1.6e-93
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0 

Query: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60
           MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM
Sbjct: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60

Query: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120
           LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM
Sbjct: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120

Query: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKR 177
           AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKR
Sbjct: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKR 176

[Close]
BLAST of Carg25918 vs. NCBI nr
Match: XP_018817673.1 (PREDICTED: 40S ribosomal protein S9-2-like [Juglans regia])

HSP 1 Score: 350.5 bits (898), Expect = 3.7e-93
Identity = 175/176 (99.43%), Postives = 176/176 (100.00%), Query Frame = 0 

Query: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60
           MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM
Sbjct: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60

Query: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120
           LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM
Sbjct: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120

Query: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKR 177
           AKSIHHARVLIRQ+HIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKR
Sbjct: 121 AKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKR 176

[Close]
BLAST of Carg25918 vs. TAIR10
Match: AT5G39850.1 (Ribosomal protein S4)

HSP 1 Score: 333.6 bits (854), Expect = 8.4e-92
Identity = 165/176 (93.75%), Postives = 172/176 (97.73%), Query Frame = 0 

Query: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60
           MV+V FYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQY LSRIRN AR 
Sbjct: 1   MVNVRFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYTLSRIRNAARE 60

Query: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120
           LLTLDEKNPRRIFEGEALLRRMNRYGLLDE+QNKLDYVLALTVENFLERRLQT+VFKSGM
Sbjct: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDETQNKLDYVLALTVENFLERRLQTIVFKSGM 120

Query: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKR 177
           AKSIHHARVLIRQ+HIRVGRQ+VNIPSFMVRV+SQKH+DFSLTSPFGGGRPGRVKR
Sbjct: 121 AKSIHHARVLIRQRHIRVGRQLVNIPSFMVRVESQKHVDFSLTSPFGGGRPGRVKR 176

[Close]
BLAST of Carg25918 vs. TAIR10
Match: AT5G15200.1 (Ribosomal protein S4)

HSP 1 Score: 323.2 bits (827), Expect = 1.1e-88
Identity = 160/176 (90.91%), Postives = 171/176 (97.16%), Query Frame = 0 

Query: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60
           MVHV +YRNYGKTFK PRRPYEKERLD+ELKLVGEYGLR KRELWRVQY+LSRIRN AR 
Sbjct: 1   MVHVCYYRNYGKTFKGPRRPYEKERLDSELKLVGEYGLRNKRELWRVQYSLSRIRNAARD 60

Query: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120
           LLTLDEK+PRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQT+VFKSGM
Sbjct: 61  LLTLDEKSPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTIVFKSGM 120

Query: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKR 177
           AKSIHH+RVLIRQ+HIRVG+Q+VNIPSFMVR+DSQKHIDF+LTSPFGGGRPGRVKR
Sbjct: 121 AKSIHHSRVLIRQRHIRVGKQLVNIPSFMVRLDSQKHIDFALTSPFGGGRPGRVKR 176

[Close]
BLAST of Carg25918 vs. TAIR10
Match: AT5G15750.1 (Alpha-L RNA-binding motif/Ribosomal protein S4 family protein)

HSP 1 Score: 42.4 bits (98), Expect = 3.9e-04
Identity = 29/130 (22.31%), Postives = 61/130 (46.92%), Query Frame = 0 

Query: 21  YEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNPRRIFEGEALLR 80
           +++E    E ++   Y +  + +  +       ++    ++  +D  +P RI   + LL 
Sbjct: 20  WKREGNHRENEITYRYHMGSRDDYKKYSGLCRMVQKLTNIMKQMDPADPFRIQMTDMLLE 79

Query: 81  RMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQKHIRVGR 140
           ++   G++  ++  L     L+V +F  RRL T++     A+    A   I Q H+RVG 
Sbjct: 80  KLYNMGVI-PTRKSLTLTERLSVSSFCRRRLSTVLVHLKFAEHHKEAVTYIEQGHVRVGP 139

Query: 141 QVVNIPSFMV 151
           + +  P+F+V
Sbjct: 140 ETITDPAFLV 148

[Close]
BLAST of Carg25918 vs. Swiss-Prot
Match: sp|Q9FLF0|RS92_ARATH (40S ribosomal protein S9-2 OS=Arabidopsis thaliana OX=3702 GN=RPS9C PE=1 SV=1)

HSP 1 Score: 333.6 bits (854), Expect = 1.5e-90
Identity = 165/176 (93.75%), Postives = 172/176 (97.73%), Query Frame = 0 

Query: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60
           MV+V FYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQY LSRIRN AR 
Sbjct: 1   MVNVRFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYTLSRIRNAARE 60

Query: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120
           LLTLDEKNPRRIFEGEALLRRMNRYGLLDE+QNKLDYVLALTVENFLERRLQT+VFKSGM
Sbjct: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDETQNKLDYVLALTVENFLERRLQTIVFKSGM 120

Query: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKR 177
           AKSIHHARVLIRQ+HIRVGRQ+VNIPSFMVRV+SQKH+DFSLTSPFGGGRPGRVKR
Sbjct: 121 AKSIHHARVLIRQRHIRVGRQLVNIPSFMVRVESQKHVDFSLTSPFGGGRPGRVKR 176

[Close]
BLAST of Carg25918 vs. Swiss-Prot
Match: sp|Q9LXG1|RS91_ARATH (40S ribosomal protein S9-1 OS=Arabidopsis thaliana OX=3702 GN=RPS9B PE=1 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 2.1e-87
Identity = 160/176 (90.91%), Postives = 171/176 (97.16%), Query Frame = 0 

Query: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60
           MVHV +YRNYGKTFK PRRPYEKERLD+ELKLVGEYGLR KRELWRVQY+LSRIRN AR 
Sbjct: 1   MVHVCYYRNYGKTFKGPRRPYEKERLDSELKLVGEYGLRNKRELWRVQYSLSRIRNAARD 60

Query: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120
           LLTLDEK+PRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQT+VFKSGM
Sbjct: 61  LLTLDEKSPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTIVFKSGM 120

Query: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKR 177
           AKSIHH+RVLIRQ+HIRVG+Q+VNIPSFMVR+DSQKHIDF+LTSPFGGGRPGRVKR
Sbjct: 121 AKSIHHSRVLIRQRHIRVGKQLVNIPSFMVRLDSQKHIDFALTSPFGGGRPGRVKR 176

[Close]
BLAST of Carg25918 vs. Swiss-Prot
Match: sp|P52810|RS9_PODAS (40S ribosomal protein S9 OS=Podospora anserina OX=5145 GN=RPS9 PE=3 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 6.2e-68
Identity = 127/169 (75.15%), Postives = 150/169 (88.76%), Query Frame = 0 

Query: 8   RNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEK 67
           R+Y KT K PRRP+E  RLD+ELKLVGEYGLR KRE+WRV   LS+IR  AR LLTLDEK
Sbjct: 4   RSYSKTAKVPRRPFEAARLDSELKLVGEYGLRNKREVWRVLLTLSKIRRAARELLTLDEK 63

Query: 68  NPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHA 127
           +P+R+FEG AL+RR+ R G+LDES+ KLDYVLAL  E+FLERRLQTLV+K G+AKSIHHA
Sbjct: 64  DPKRLFEGNALIRRLVRVGVLDESRMKLDYVLALKAEDFLERRLQTLVYKLGLAKSIHHA 123

Query: 128 RVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKR 177
           RVLIRQ+HIRVG+Q+VN+PSF+VR+DSQKHIDF+LTSPFGGGRPGRV+R
Sbjct: 124 RVLIRQRHIRVGKQIVNVPSFVVRLDSQKHIDFALTSPFGGGRPGRVRR 172

[Close]
BLAST of Carg25918 vs. Swiss-Prot
Match: sp|P55935|RS9_DROME (40S ribosomal protein S9 OS=Drosophila melanogaster OX=7227 GN=RpS9 PE=1 SV=2)

HSP 1 Score: 253.8 bits (647), Expect = 1.5e-66
Identity = 125/167 (74.85%), Postives = 147/167 (88.02%), Query Frame = 0 

Query: 10  YGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNP 69
           + KT+  PRRPYEK RLD ELK++GEYGLR KRE+WRV+YAL++IR  AR LLTLDEK+ 
Sbjct: 10  FSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDEKDE 69

Query: 70  RRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARV 129
           +R+F+G ALLRR+ R G+LDES+ KLDYVL L +E+FLERRLQT VFK G+AKSIHHARV
Sbjct: 70  KRLFQGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARV 129

Query: 130 LIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKR 177
           LIRQ+HIRV +QVVNIPSF+VR+DSQKHIDFSL SPFGGGRPGRVKR
Sbjct: 130 LIRQRHIRVRKQVVNIPSFVVRLDSQKHIDFSLKSPFGGGRPGRVKR 176

[Close]
BLAST of Carg25918 vs. Swiss-Prot
Match: sp|B4PEU8|RS9_DROYA (40S ribosomal protein S9 OS=Drosophila yakuba OX=7245 GN=RpS9 PE=2 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 1.5e-66
Identity = 125/167 (74.85%), Postives = 147/167 (88.02%), Query Frame = 0 

Query: 10  YGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNP 69
           + KT+  PRRPYEK RLD ELK++GEYGLR KRE+WRV+YAL++IR  AR LLTLDEK+ 
Sbjct: 10  FSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDEKDE 69

Query: 70  RRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARV 129
           +R+F+G ALLRR+ R G+LDES+ KLDYVL L +E+FLERRLQT VFK G+AKSIHHARV
Sbjct: 70  KRLFQGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARV 129

Query: 130 LIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKR 177
           LIRQ+HIRV +QVVNIPSF+VR+DSQKHIDFSL SPFGGGRPGRVKR
Sbjct: 130 LIRQRHIRVRKQVVNIPSFVVRLDSQKHIDFSLKSPFGGGRPGRVKR 176

[Close]
BLAST of Carg25918 vs. TrEMBL
Match: tr|A0A0A0KSN1|A0A0A0KSN1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G604980 PE=3 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 1.1e-93
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0 

Query: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60
           MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM
Sbjct: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60

Query: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120
           LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM
Sbjct: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120

Query: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKR 177
           AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKR
Sbjct: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKR 176

[Close]
BLAST of Carg25918 vs. TrEMBL
Match: tr|A0A1S3CA34|A0A1S3CA34_CUCME (40S ribosomal protein S9-2 OS=Cucumis melo OX=3656 GN=LOC103498678 PE=3 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 1.1e-93
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0 

Query: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60
           MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM
Sbjct: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60

Query: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120
           LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM
Sbjct: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120

Query: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKR 177
           AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKR
Sbjct: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKR 176

[Close]
BLAST of Carg25918 vs. TrEMBL
Match: tr|A0A2I4F4K8|A0A2I4F4K8_9ROSI (40S ribosomal protein S9-2-like OS=Juglans regia OX=51240 GN=LOC108995453 PE=3 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 1.1e-93
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0 

Query: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60
           MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM
Sbjct: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60

Query: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120
           LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM
Sbjct: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120

Query: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKR 177
           AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKR
Sbjct: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKR 176

[Close]
BLAST of Carg25918 vs. TrEMBL
Match: tr|A0A2P5EDU1|A0A2P5EDU1_9ROSA (Ribosomal protein OS=Trema orientalis OX=63057 GN=TorRG33x02_205130 PE=3 SV=1)

HSP 1 Score: 350.5 bits (898), Expect = 2.4e-93
Identity = 175/176 (99.43%), Postives = 176/176 (100.00%), Query Frame = 0 

Query: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60
           MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM
Sbjct: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60

Query: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120
           LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM
Sbjct: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120

Query: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKR 177
           AKSIHHARVLIRQ+HIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKR
Sbjct: 121 AKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKR 176

[Close]
BLAST of Carg25918 vs. TrEMBL
Match: tr|A0A2I4EE59|A0A2I4EE59_9ROSI (40S ribosomal protein S9-2-like OS=Juglans regia OX=51240 GN=LOC108988775 PE=3 SV=1)

HSP 1 Score: 350.5 bits (898), Expect = 2.4e-93
Identity = 175/176 (99.43%), Postives = 176/176 (100.00%), Query Frame = 0 

Query: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60
           MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM
Sbjct: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60

Query: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120
           LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM
Sbjct: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120

Query: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKR 177
           AKSIHHARVLIRQ+HIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKR
Sbjct: 121 AKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKR 176

The following BLAST results are available for this feature:
BLAST of Carg25918 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004135180.11.6e-93100.00PREDICTED: 40S ribosomal protein S9-2 [Cucumis sativus] >XP_004141548.1 PREDICTE... [more]
XP_018826572.11.6e-93100.00PREDICTED: 40S ribosomal protein S9-2-like [Juglans regia][more]
XP_022944955.11.6e-93100.0040S ribosomal protein S9-2 [Cucurbita moschata] >XP_022968439.1 40S ribosomal pr... [more]
XP_022957492.11.6e-93100.0040S ribosomal protein S9-2-like [Cucurbita moschata] >XP_022998674.1 40S ribosom... [more]
XP_018817673.13.7e-9399.43PREDICTED: 40S ribosomal protein S9-2-like [Juglans regia][more]
BLAST of Carg25918 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G39850.18.4e-9293.75Ribosomal protein S4[more]
AT5G15200.11.1e-8890.91Ribosomal protein S4[more]
AT5G15750.13.9e-0422.31Alpha-L RNA-binding motif/Ribosomal protein S4 family protein[more]
BLAST of Carg25918 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9FLF0|RS92_ARATH1.5e-9093.7540S ribosomal protein S9-2 OS=Arabidopsis thaliana OX=3702 GN=RPS9C PE=1 SV=1[more]
sp|Q9LXG1|RS91_ARATH2.1e-8790.9140S ribosomal protein S9-1 OS=Arabidopsis thaliana OX=3702 GN=RPS9B PE=1 SV=1[more]
sp|P52810|RS9_PODAS6.2e-6875.1540S ribosomal protein S9 OS=Podospora anserina OX=5145 GN=RPS9 PE=3 SV=1[more]
sp|P55935|RS9_DROME1.5e-6674.8540S ribosomal protein S9 OS=Drosophila melanogaster OX=7227 GN=RpS9 PE=1 SV=2[more]
sp|B4PEU8|RS9_DROYA1.5e-6674.8540S ribosomal protein S9 OS=Drosophila yakuba OX=7245 GN=RpS9 PE=2 SV=1[more]
BLAST of Carg25918 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KSN1|A0A0A0KSN1_CUCSA1.1e-93100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G604980 PE=3 SV=1[more]
tr|A0A1S3CA34|A0A1S3CA34_CUCME1.1e-93100.0040S ribosomal protein S9-2 OS=Cucumis melo OX=3656 GN=LOC103498678 PE=3 SV=1[more]
tr|A0A2I4F4K8|A0A2I4F4K8_9ROSI1.1e-93100.0040S ribosomal protein S9-2-like OS=Juglans regia OX=51240 GN=LOC108995453 PE=3 S... [more]
tr|A0A2P5EDU1|A0A2P5EDU1_9ROSA2.4e-9399.43Ribosomal protein OS=Trema orientalis OX=63057 GN=TorRG33x02_205130 PE=3 SV=1[more]
tr|A0A2I4EE59|A0A2I4EE59_9ROSI2.4e-9399.4340S ribosomal protein S9-2-like OS=Juglans regia OX=51240 GN=LOC108988775 PE=3 S... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0015935small ribosomal subunit
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0003723RNA binding
GO:0019843rRNA binding
Vocabulary: INTERPRO
TermDefinition
IPR018079Ribosomal_S4_CS
IPR022801Ribosomal_S4/S9
IPR036986S4_RNA-bd_sf
IPR005710Ribosomal_S4/S9_euk/arc
IPR002942S4_RNA-bd
IPR001912Ribosomal_S4/S9_N
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0005622 intracellular
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg25918-RACarg25918-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001912Ribosomal protein S4/S9, N-terminalSMARTSM01390Ribosomal_S4_2coord: 8..108
e-value: 6.8E-25
score: 98.7
IPR001912Ribosomal protein S4/S9, N-terminalPFAMPF00163Ribosomal_S4coord: 12..64
e-value: 6.7E-7
score: 30.0
IPR002942RNA-binding S4 domainSMARTSM00363s4_6coord: 109..180
e-value: 2.0E-5
score: 34.0
IPR002942RNA-binding S4 domainPFAMPF01479S4coord: 109..152
e-value: 4.2E-13
score: 48.7
IPR002942RNA-binding S4 domainPROSITEPS50889S4coord: 109..180
score: 11.142
IPR002942RNA-binding S4 domainCDDcd00165S4coord: 109..153
e-value: 5.45707E-9
score: 49.1702
IPR005710Ribosomal protein S4/S9, eukaryotic/archaealTIGRFAMTIGR01018TIGR01018coord: 11..166
e-value: 1.9E-64
score: 214.5
IPR036986RNA-binding S4 domain superfamilyGENE3DG3DSA:3.10.290.10coord: 108..165
e-value: 1.7E-12
score: 49.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 164..197
NoneNo IPR availablePANTHERPTHR11831:SF16SUBFAMILY NOT NAMEDcoord: 1..195
NoneNo IPR availableSUPERFAMILYSSF55174Alpha-L RNA-binding motifcoord: 12..159
IPR022801Ribosomal protein S4/S9PANTHERPTHR1183130S 40S RIBOSOMAL PROTEINcoord: 1..195
IPR018079Ribosomal protein S4, conserved sitePROSITEPS00632RIBOSOMAL_S4coord: 107..131

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg25918CmaCh04G018840Cucurbita maxima (Rimu)carcmaB0312
Carg25918CmoCh04G019880Cucurbita moschata (Rifu)carcmoB0317
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None