CmaCh04G018840 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G018840
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Ribosomal protein S9, component of cytosolic 80S ribosome and 40S small subunit
Location	Cma_Chr04 : 9708161 .. 9709361 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGATATTGGGTGTAAATGTTACAGAAAAATGTTTGAAAAACAATGATGCTTGGGTGATGTTTGCTTCTTCATGCTTTTATATAGACCCAGGATCATTGAATTGTGGATTTATCATTATATAGATGGGAAGACCTTCAAGAAACCTCGGCGCCCTTATGAGAAGGAGCGTCTGGATGCAGAGCTCAAACTTGTAGGTGAATATGGGCTTCGTTGTAAAAGAGAGCTATGGCGTGTTCAATATGCATTGAGCCGAATCCGAAATAATGCCAGGATGCTTTTGACGCTTGATGAAAAAAATCCACGAAGAATTTTTGAGGGAGAGGCCCTGCTTAGGAGGATGAACAGGTATGGTCTTTTGGATGAAAGTCAAAACAAGCTCGATTATGTCTTGGCGCTTACTGTCGAGAATTTCCTTGAGCGTCGTCTCCAAACCCTTGTGTTCAAGTCTGGAATGGCAAAATCTATCCACCACGCTAGAGTGCTCATCAGGCAGAAGCATATAAGGTAGGGTGCTTCACTATCCATCTTTTTCCCAGAATGAAATAGAGTTCATGTACAGTTTAACATTTCTTCTGCCGTTTTGTTGCTTGCATCGTTCTAGTTCATGATGATGGTCAGCTTTTACATAGCACATTTTTCTTCTTTGCCTTGATAGGGTAGGGAGGCAGGTAGTTAACATACCCTCTTTCATGGTGAGGGTTGATTCCCAAAAGCACATAGATTTCTCTCTCACAAGTCCATTTGGAGGCGGACGTCCTGGAAGGGTGAAGAGAAAGAACCAGAAGGCGGCTGCGAAAAAGGCTGCTGGCGGAGATGGAGATGAAGAAGAAGAGGATTGAGCTGTGGGCTTAGTTAAAAGTAGTGTTTTACTTCAATTTTGTGTTCTGTGTTTTATTACGTCTTTTGAGCTTGTGTTTGGACTTCTACTTTGAGCTGTGACCGCCCTGTATTTGTTATTGGCTCAATTGAAGGTCTCACACGCCTCGGTTTTGTGTTCGAGTCCTAGAAAATCTTGTGGGATGTAGGAGAACTTTTAAGTTGTTGGACTACATTGAGAAGACATGCAAGCTACGGTTCCTACAAAAGTAGAGTTTTTGCCTTTCATAAAGAGTTTTTCATTCCCTTTAATTCCTACTTCTCGCGAAGACATCTTTTGATTTTTATGTCTTGTTATGATTTTTCATGAAGTAAGAAGAG

mRNA sequence

ATGACGATATTGGATGGGAAGACCTTCAAGAAACCTCGGCGCCCTTATGAGAAGGAGCGTCTGGATGCAGAGCTCAAACTTGTAGGTGAATATGGGCTTCGTTGTAAAAGAGAGCTATGGCGTGTTCAATATGCATTGAGCCGAATCCGAAATAATGCCAGGATGCTTTTGACGCTTGATGAAAAAAATCCACGAAGAATTTTTGAGGGAGAGGCCCTGCTTAGGAGGATGAACAGGTATGGTCTTTTGGATGAAAGTCAAAACAAGCTCGATTATGTCTTGGCGCTTACTGTCGAGAATTTCCTTGAGCGTCGTCTCCAAACCCTTGTGTTCAAGTCTGGAATGGCAAAATCTATCCACCACGCTAGAGTGCTCATCAGGCAGAAGCATATAAGGGTAGGGAGGCAGGTAGTTAACATACCCTCTTTCATGGTGAGGGTTGATTCCCAAAAGCACATAGATTTCTCTCTCACAAGTCCATTTGGAGGCGGACGTCCTGGAAGGGTGAAGAGAAAGAACCAGAAGGCGGCTGCGAAAAAGGCTGCTGGCGGAGATGGAGATGAAGAAGAAGAGGATTGAGCTGTGGGCTTAGTTAAAAGTAGTGTTTTACTTCAATTTTGTGTTCTGTGTTTTATTACGTCTTTTGAGCTTGTGTTTGGACTTCTACTTTGAGCTGTGACCGCCCTGTATTTGTTATTGGCTCAATTGAAGGTCTCACACGCCTCGGTTTTGTGTTCGAGTCCTAGAAAATCTTGTGGGATGTAGGAGAACTTTTAAGTTGTTGGACTACATTGAGAAGACATGCAAGCTACGGTTCCTACAAAAGTAGAGTTTTTGCCTTTCATAAAGAGTTTTTCATTCCCTTTAATTCCTACTTCTCGCGAAGACATCTTTTGATTTTTATGTCTTGTTATGATTTTTCATGAAGTAAGAAGAG

Coding sequence (CDS)

ATGACGATATTGGATGGGAAGACCTTCAAGAAACCTCGGCGCCCTTATGAGAAGGAGCGTCTGGATGCAGAGCTCAAACTTGTAGGTGAATATGGGCTTCGTTGTAAAAGAGAGCTATGGCGTGTTCAATATGCATTGAGCCGAATCCGAAATAATGCCAGGATGCTTTTGACGCTTGATGAAAAAAATCCACGAAGAATTTTTGAGGGAGAGGCCCTGCTTAGGAGGATGAACAGGTATGGTCTTTTGGATGAAAGTCAAAACAAGCTCGATTATGTCTTGGCGCTTACTGTCGAGAATTTCCTTGAGCGTCGTCTCCAAACCCTTGTGTTCAAGTCTGGAATGGCAAAATCTATCCACCACGCTAGAGTGCTCATCAGGCAGAAGCATATAAGGGTAGGGAGGCAGGTAGTTAACATACCCTCTTTCATGGTGAGGGTTGATTCCCAAAAGCACATAGATTTCTCTCTCACAAGTCCATTTGGAGGCGGACGTCCTGGAAGGGTGAAGAGAAAGAACCAGAAGGCGGCTGCGAAAAAGGCTGCTGGCGGAGATGGAGATGAAGAAGAAGAGGATTGA

Protein sequence

MTILDGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKAAGGDGDEEEED

Homology

[Close]

BLAST of CmaCh04G018840 vs. Swiss-Prot
Match: RS92_ARATH (40S ribosomal protein S9-2 OS=Arabidopsis thaliana GN=RPS9C PE=1 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 9.1e-93
Identity = 170/187 (90.91%), Postives = 183/187 (97.86%), Query Frame = 1


Query: 6   GKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNPR 65
           GKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQY LSRIRN AR LLTLDEKNPR
Sbjct: 11  GKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYTLSRIRNAARELLTLDEKNPR 70

Query: 66  RIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVL 125
           RIFEGEALLRRMNRYGLLDE+QNKLDYVLALTVENFLERRLQT+VFKSGMAKSIHHARVL
Sbjct: 71  RIFEGEALLRRMNRYGLLDETQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHARVL 130

Query: 126 IRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKAAGGD 185
           IRQ+HIRVGRQ+VNIPSFMVRV+SQKH+DFSLTSPFGGGRPGRVKR+N++A AKKA+GGD
Sbjct: 131 IRQRHIRVGRQLVNIPSFMVRVESQKHVDFSLTSPFGGGRPGRVKRRNERAGAKKASGGD 190

Query: 186 GDEEEED 193
           GDE++E+
Sbjct: 191 GDEDDEE 197

[Close]

BLAST of CmaCh04G018840 vs. Swiss-Prot
Match: RS91_ARATH (40S ribosomal protein S9-1 OS=Arabidopsis thaliana GN=RPS9B PE=1 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 1.5e-87
Identity = 165/188 (87.77%), Postives = 181/188 (96.28%), Query Frame = 1


Query: 6   GKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNPR 65
           GKTFK PRRPYEKERLD+ELKLVGEYGLR KRELWRVQY+LSRIRN AR LLTLDEK+PR
Sbjct: 11  GKTFKGPRRPYEKERLDSELKLVGEYGLRNKRELWRVQYSLSRIRNAARDLLTLDEKSPR 70

Query: 66  RIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVL 125
           RIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQT+VFKSGMAKSIHH+RVL
Sbjct: 71  RIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHSRVL 130

Query: 126 IRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKAAGG- 185
           IRQ+HIRVG+Q+VNIPSFMVR+DSQKHIDF+LTSPFGGGRPGRVKR+N+K+A+KKA+GG 
Sbjct: 131 IRQRHIRVGKQLVNIPSFMVRLDSQKHIDFALTSPFGGGRPGRVKRRNEKSASKKASGGG 190

Query: 186 --DGDEEE 191
             DGD+EE
Sbjct: 191 DADGDDEE 198

[Close]

BLAST of CmaCh04G018840 vs. Swiss-Prot
Match: RS9_PODAS (40S ribosomal protein S9 OS=Podospora anserina GN=RPS9 PE=3 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 1.1e-69
Identity = 136/186 (73.12%), Postives = 160/186 (86.02%), Query Frame = 1


Query: 7   KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNPRR 66
           KT K PRRP+E  RLD+ELKLVGEYGLR KRE+WRV   LS+IR  AR LLTLDEK+P+R
Sbjct: 8   KTAKVPRRPFEAARLDSELKLVGEYGLRNKREVWRVLLTLSKIRRAARELLTLDEKDPKR 67

Query: 67  IFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLI 126
           +FEG AL+RR+ R G+LDES+ KLDYVLAL  E+FLERRLQTLV+K G+AKSIHHARVLI
Sbjct: 68  LFEGNALIRRLVRVGVLDESRMKLDYVLALKAEDFLERRLQTLVYKLGLAKSIHHARVLI 127

Query: 127 RQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKAAGGDG 186
           RQ+HIRVG+Q+VN+PSF+VR+DSQKHIDF+LTSPFGGGRPGRV+RK     AK A GGDG
Sbjct: 128 RQRHIRVGKQIVNVPSFVVRLDSQKHIDFALTSPFGGGRPGRVRRKK----AKAAEGGDG 187

Query: 187 DEEEED 193
           D EE++
Sbjct: 188 DAEEDE 189

[Close]

BLAST of CmaCh04G018840 vs. Swiss-Prot
Match: RS9_PAPAN (40S ribosomal protein S9 OS=Papio anubis GN=RPS9 PE=3 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 1.6e-68
Identity = 133/186 (71.51%), Postives = 157/186 (84.41%), Query Frame = 1


Query: 7   KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNPRR 66
           KT+  PRRP+EK RLD ELKL+GEYGLR KRE+WRV++ L++IR  AR LLTLDEK+PRR
Sbjct: 11  KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRR 70

Query: 67  IFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLI 126
           +FEG ALLRR+ R G+LDE + KLDY+L L +E+FLERRLQT VFK G+AKSIHHARVLI
Sbjct: 71  LFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLI 130

Query: 127 RQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKAAGGDG 186
           RQ+HIRV +QVVNIPSF+VR+DSQKHIDFSL SP+GGGRPGRVKRKN K    +   G G
Sbjct: 131 RQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKKG--QGGAGAG 190

Query: 187 DEEEED 193
           D+EEED
Sbjct: 191 DDEEED 194

[Close]

BLAST of CmaCh04G018840 vs. Swiss-Prot
Match: RS9_BOVIN (40S ribosomal protein S9 OS=Bos taurus GN=RPS9 PE=2 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 1.6e-68
Identity = 133/186 (71.51%), Postives = 157/186 (84.41%), Query Frame = 1


Query: 7   KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNPRR 66
           KT+  PRRP+EK RLD ELKL+GEYGLR KRE+WRV++ L++IR  AR LLTLDEK+PRR
Sbjct: 11  KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRR 70

Query: 67  IFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLI 126
           +FEG ALLRR+ R G+LDE + KLDY+L L +E+FLERRLQT VFK G+AKSIHHARVLI
Sbjct: 71  LFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLI 130

Query: 127 RQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKAAGGDG 186
           RQ+HIRV +QVVNIPSF+VR+DSQKHIDFSL SP+GGGRPGRVKRKN K    +   G G
Sbjct: 131 RQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKKG--QGGAGAG 190

Query: 187 DEEEED 193
           D+EEED
Sbjct: 191 DDEEED 194

[Close]

BLAST of CmaCh04G018840 vs. TrEMBL
Match: A0A0A0KSN1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G604980 PE=3 SV=1)

HSP 1 Score: 363.2 bits (931), Expect = 1.9e-97
Identity = 186/187 (99.47%), Postives = 187/187 (100.00%), Query Frame = 1


Query: 6   GKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNPR 65
           GKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNPR
Sbjct: 11  GKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNPR 70

Query: 66  RIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVL 125
           RIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVL
Sbjct: 71  RIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVL 130

Query: 126 IRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKAAGGD 185
           IRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKAAGGD
Sbjct: 131 IRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKAAGGD 190

Query: 186 GDEEEED 193
           GDEE+ED
Sbjct: 191 GDEEDED 197

[Close]

BLAST of CmaCh04G018840 vs. TrEMBL
Match: W9QQ56_9ROSA (40S ribosomal protein S9-2 OS=Morus notabilis GN=L484_005300 PE=3 SV=1)

HSP 1 Score: 363.2 bits (931), Expect = 1.9e-97
Identity = 185/188 (98.40%), Postives = 188/188 (100.00%), Query Frame = 1


Query: 5   DGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNP 64
           DGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNP
Sbjct: 84  DGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNP 143

Query: 65  RRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARV 124
           RRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARV
Sbjct: 144 RRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARV 203

Query: 125 LIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKAAGG 184
           LIRQ+HIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKR+NQKAAAKKAAGG
Sbjct: 204 LIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRRNQKAAAKKAAGG 263

Query: 185 DGDEEEED 193
           DGDEE+ED
Sbjct: 264 DGDEEDED 271

[Close]

BLAST of CmaCh04G018840 vs. TrEMBL
Match: W9QV98_9ROSA (40S ribosomal protein S9-2 OS=Morus notabilis GN=L484_006534 PE=3 SV=1)

HSP 1 Score: 358.6 bits (919), Expect = 4.7e-96
Identity = 184/187 (98.40%), Postives = 186/187 (99.47%), Query Frame = 1


Query: 6   GKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNPR 65
           GKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNPR
Sbjct: 11  GKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNPR 70

Query: 66  RIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVL 125
           RIFEGEALLRRMNR+GLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVL
Sbjct: 71  RIFEGEALLRRMNRHGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVL 130

Query: 126 IRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKAAGGD 185
           IRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKAAGGD
Sbjct: 131 IRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKAAGGD 190

Query: 186 GDEEEED 193
           GD +EED
Sbjct: 191 GDGDEED 197

[Close]

BLAST of CmaCh04G018840 vs. TrEMBL
Match: D7FBA7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0108g00460 PE=3 SV=1)

HSP 1 Score: 355.9 bits (912), Expect = 3.1e-95
Identity = 181/187 (96.79%), Postives = 185/187 (98.93%), Query Frame = 1


Query: 6   GKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNPR 65
           GKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQY LSRIRNNARMLLTLDEKNPR
Sbjct: 11  GKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYVLSRIRNNARMLLTLDEKNPR 70

Query: 66  RIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVL 125
           RIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVL
Sbjct: 71  RIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVL 130

Query: 126 IRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKAAGGD 185
           IRQ+HIRVGRQVVNIPSF+VR+DSQKHIDFSLTSP GGGRPGRVKRKNQKAAAKKAAGGD
Sbjct: 131 IRQRHIRVGRQVVNIPSFLVRMDSQKHIDFSLTSPLGGGRPGRVKRKNQKAAAKKAAGGD 190

Query: 186 GDEEEED 193
           GDEE+ED
Sbjct: 191 GDEEDED 197

[Close]

BLAST of CmaCh04G018840 vs. TrEMBL
Match: A0A059ARY5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I01938 PE=3 SV=1)

HSP 1 Score: 354.4 bits (908), Expect = 8.9e-95
Identity = 180/187 (96.26%), Postives = 185/187 (98.93%), Query Frame = 1


Query: 6   GKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNPR 65
           GKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQY LSRIRNNARMLLTLDEKNPR
Sbjct: 11  GKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYVLSRIRNNARMLLTLDEKNPR 70

Query: 66  RIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVL 125
           RIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVL
Sbjct: 71  RIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVL 130

Query: 126 IRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKAAGGD 185
           IRQ+HIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKN KAA+KKA+GGD
Sbjct: 131 IRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNTKAASKKASGGD 190

Query: 186 GDEEEED 193
           G+EE+ED
Sbjct: 191 GEEEDED 197

[Close]

BLAST of CmaCh04G018840 vs. TAIR10
Match: AT5G39850.1 (AT5G39850.1 Ribosomal protein S4)

HSP 1 Score: 340.9 bits (873), Expect = 5.1e-94
Identity = 170/187 (90.91%), Postives = 183/187 (97.86%), Query Frame = 1


Query: 6   GKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNPR 65
           GKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQY LSRIRN AR LLTLDEKNPR
Sbjct: 11  GKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYTLSRIRNAARELLTLDEKNPR 70

Query: 66  RIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVL 125
           RIFEGEALLRRMNRYGLLDE+QNKLDYVLALTVENFLERRLQT+VFKSGMAKSIHHARVL
Sbjct: 71  RIFEGEALLRRMNRYGLLDETQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHARVL 130

Query: 126 IRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKAAGGD 185
           IRQ+HIRVGRQ+VNIPSFMVRV+SQKH+DFSLTSPFGGGRPGRVKR+N++A AKKA+GGD
Sbjct: 131 IRQRHIRVGRQLVNIPSFMVRVESQKHVDFSLTSPFGGGRPGRVKRRNERAGAKKASGGD 190

Query: 186 GDEEEED 193
           GDE++E+
Sbjct: 191 GDEDDEE 197

[Close]

BLAST of CmaCh04G018840 vs. TAIR10
Match: AT5G15200.1 (AT5G15200.1 Ribosomal protein S4)

HSP 1 Score: 323.6 bits (828), Expect = 8.5e-89
Identity = 165/188 (87.77%), Postives = 181/188 (96.28%), Query Frame = 1


Query: 6   GKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNPR 65
           GKTFK PRRPYEKERLD+ELKLVGEYGLR KRELWRVQY+LSRIRN AR LLTLDEK+PR
Sbjct: 11  GKTFKGPRRPYEKERLDSELKLVGEYGLRNKRELWRVQYSLSRIRNAARDLLTLDEKSPR 70

Query: 66  RIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVL 125
           RIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQT+VFKSGMAKSIHH+RVL
Sbjct: 71  RIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHSRVL 130

Query: 126 IRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKAAGG- 185
           IRQ+HIRVG+Q+VNIPSFMVR+DSQKHIDF+LTSPFGGGRPGRVKR+N+K+A+KKA+GG 
Sbjct: 131 IRQRHIRVGKQLVNIPSFMVRLDSQKHIDFALTSPFGGGRPGRVKRRNEKSASKKASGGG 190

Query: 186 --DGDEEE 191
             DGD+EE
Sbjct: 191 DADGDDEE 198

[Close]

BLAST of CmaCh04G018840 vs. NCBI nr
Match: gi|703082817|ref|XP_010092050.1| (40S ribosomal protein S9-2 [Morus notabilis])

HSP 1 Score: 363.2 bits (931), Expect = 2.7e-97
Identity = 185/188 (98.40%), Postives = 188/188 (100.00%), Query Frame = 1


Query: 5   DGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNP 64
           DGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNP
Sbjct: 84  DGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNP 143

Query: 65  RRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARV 124
           RRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARV
Sbjct: 144 RRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARV 203

Query: 125 LIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKAAGG 184
           LIRQ+HIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKR+NQKAAAKKAAGG
Sbjct: 204 LIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRRNQKAAAKKAAGG 263

Query: 185 DGDEEEED 193
           DGDEE+ED
Sbjct: 264 DGDEEDED 271

[Close]

BLAST of CmaCh04G018840 vs. NCBI nr
Match: gi|449434792|ref|XP_004135180.1| (PREDICTED: 40S ribosomal protein S9-2 [Cucumis sativus])

HSP 1 Score: 363.2 bits (931), Expect = 2.7e-97
Identity = 186/187 (99.47%), Postives = 187/187 (100.00%), Query Frame = 1


Query: 6   GKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNPR 65
           GKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNPR
Sbjct: 11  GKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNPR 70

Query: 66  RIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVL 125
           RIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVL
Sbjct: 71  RIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVL 130

Query: 126 IRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKAAGGD 185
           IRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKAAGGD
Sbjct: 131 IRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKAAGGD 190

Query: 186 GDEEEED 193
           GDEE+ED
Sbjct: 191 GDEEDED 197

[Close]

BLAST of CmaCh04G018840 vs. NCBI nr
Match: gi|719965609|ref|XP_010256989.1| (PREDICTED: 40S ribosomal protein S9-2-like [Nelumbo nucifera])

HSP 1 Score: 359.8 bits (922), Expect = 3.0e-96
Identity = 184/187 (98.40%), Postives = 186/187 (99.47%), Query Frame = 1


Query: 6   GKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNPR 65
           GKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNPR
Sbjct: 11  GKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNPR 70

Query: 66  RIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVL 125
           RIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVL
Sbjct: 71  RIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVL 130

Query: 126 IRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKAAGGD 185
           IRQ+HIRVGRQVVNIPSFMVRVDSQKHIDFSLTSP GGGRPGRVKRKNQKAAAKKAAGGD
Sbjct: 131 IRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPLGGGRPGRVKRKNQKAAAKKAAGGD 190

Query: 186 GDEEEED 193
           GDEE+ED
Sbjct: 191 GDEEDED 197

[Close]

BLAST of CmaCh04G018840 vs. NCBI nr
Match: gi|1009132749|ref|XP_015883538.1| (PREDICTED: 40S ribosomal protein S9-2 [Ziziphus jujuba])

HSP 1 Score: 359.8 bits (922), Expect = 3.0e-96
Identity = 183/187 (97.86%), Postives = 187/187 (100.00%), Query Frame = 1


Query: 6   GKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNPR 65
           GKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNPR
Sbjct: 11  GKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNPR 70

Query: 66  RIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVL 125
           RIFEGEALLRRMNRYGLLDE+QNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVL
Sbjct: 71  RIFEGEALLRRMNRYGLLDENQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVL 130

Query: 126 IRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKAAGGD 185
           IRQ+HIRVGRQVVNIPSFMVR+DSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKAAGGD
Sbjct: 131 IRQRHIRVGRQVVNIPSFMVRLDSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKAAGGD 190

Query: 186 GDEEEED 193
           GDEE+ED
Sbjct: 191 GDEEDED 197

[Close]

BLAST of CmaCh04G018840 vs. NCBI nr
Match: gi|703079680|ref|XP_010091216.1| (40S ribosomal protein S9-2 [Morus notabilis])

HSP 1 Score: 358.6 bits (919), Expect = 6.8e-96
Identity = 184/187 (98.40%), Postives = 186/187 (99.47%), Query Frame = 1


Query: 6   GKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNPR 65
           GKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNPR
Sbjct: 11  GKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNPR 70

Query: 66  RIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVL 125
           RIFEGEALLRRMNR+GLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVL
Sbjct: 71  RIFEGEALLRRMNRHGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVL 130

Query: 126 IRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKAAGGD 185
           IRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKAAGGD
Sbjct: 131 IRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKAAGGD 190

Query: 186 GDEEEED 193
           GD +EED
Sbjct: 191 GDGDEED 197

The following BLAST results are available for this feature:

BLAST of CmaCh04G018840 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RS92_ARATH	9.1e-93	90.91	40S ribosomal protein S9-2 OS=Arabidopsis thaliana GN=RPS9C PE=1 SV=1	[more]
RS91_ARATH	1.5e-87	87.77	40S ribosomal protein S9-1 OS=Arabidopsis thaliana GN=RPS9B PE=1 SV=1	[more]
RS9_PODAS	1.1e-69	73.12	40S ribosomal protein S9 OS=Podospora anserina GN=RPS9 PE=3 SV=1	[more]
RS9_PAPAN	1.6e-68	71.51	40S ribosomal protein S9 OS=Papio anubis GN=RPS9 PE=3 SV=1	[more]
RS9_BOVIN	1.6e-68	71.51	40S ribosomal protein S9 OS=Bos taurus GN=RPS9 PE=2 SV=1	[more]

BLAST of CmaCh04G018840 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KSN1_CUCSA	1.9e-97	99.47	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G604980 PE=3 SV=1	[more]
W9QQ56_9ROSA	1.9e-97	98.40	40S ribosomal protein S9-2 OS=Morus notabilis GN=L484_005300 PE=3 SV=1	[more]
W9QV98_9ROSA	4.7e-96	98.40	40S ribosomal protein S9-2 OS=Morus notabilis GN=L484_006534 PE=3 SV=1	[more]
D7FBA7_VITVI	3.1e-95	96.79	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0108g00460 PE=3 SV=...	[more]
A0A059ARY5_EUCGR	8.9e-95	96.26	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I01938 PE=3 SV=1	[more]

BLAST of CmaCh04G018840 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G39850.1	5.1e-94	90.91	Ribosomal protein S4	[more]
AT5G15200.1	8.5e-89	87.77	Ribosomal protein S4	[more]

BLAST of CmaCh04G018840 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|703082817\|ref\|XP_010092050.1\|	2.7e-97	98.40	40S ribosomal protein S9-2 [Morus notabilis]	[more]
gi\|449434792\|ref\|XP_004135180.1\|	2.7e-97	99.47	PREDICTED: 40S ribosomal protein S9-2 [Cucumis sativus]	[more]
gi\|719965609\|ref\|XP_010256989.1\|	3.0e-96	98.40	PREDICTED: 40S ribosomal protein S9-2-like [Nelumbo nucifera]	[more]
gi\|1009132749\|ref\|XP_015883538.1\|	3.0e-96	97.86	PREDICTED: 40S ribosomal protein S9-2 [Ziziphus jujuba]	[more]
gi\|703079680\|ref\|XP_010091216.1\|	6.8e-96	98.40	40S ribosomal protein S9-2 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001912	Ribosomal_S4/S9_N
IPR002942	S4_RNA-bd
IPR005710	Ribosomal_S4/S9_euk/arc
IPR018079	Ribosomal_S4_CS
IPR022801	Ribosomal_S4/S9

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0015935	small ribosomal subunit

Vocabulary: **Molecular Function**
Term	Definition
GO:0019843	rRNA binding
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0005622	intracellular
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G018840.1	CmaCh04G018840.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001912	Ribosomal protein S4/S9, N-terminal	PFAM	PF00163	Ribosomal_S4	coord: 6..59 score: 9.
IPR001912	Ribosomal protein S4/S9, N-terminal	SMART	SM01390	Ribosomal_S4_2	coord: 3..103 score: 2.7
IPR002942	RNA-binding S4 domain	GENE3D	G3DSA:3.10.290.10		coord: 103..150 score: 1.5
IPR002942	RNA-binding S4 domain	PFAM	PF01479	S4	coord: 104..147 score: 3.9
IPR002942	RNA-binding S4 domain	SMART	SM00363	s4_6	coord: 104..175 score: 2.
IPR002942	RNA-binding S4 domain	PROFILE	PS50889	S4	coord: 104..175 score: 11
IPR005710	Ribosomal protein S4/S9, eukaryotic/archaeal	TIGRFAMs	TIGR01018	TIGR01018	coord: 7..161 score: 3.4
IPR018079	Ribosomal protein S4, conserved site	PROSITE	PS00632	RIBOSOMAL_S4	coord: 102..126 scor
IPR022801	Ribosomal protein S4/S9	PANTHER	PTHR11831	30S 40S RIBOSOMAL PROTEIN	coord: 6..192 score: 3.0E
None	No IPR available	PANTHER	PTHR11831:SF13	SUBFAMILY NOT NAMED	coord: 6..192 score: 3.0E
None	No IPR available	unknown	SSF55174	Alpha-L RNA-binding motif	coord: 7..154 score: 3.53

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G018840	CmoCh04G019880	Cucurbita moschata (Rifu)	cmacmoB728
CmaCh04G018840	Cp4.1LG01g16730	Cucurbita pepo (Zucchini)	cmacpeB720
CmaCh04G018840	Carg25918	Silver-seed gourd	carcmaB0312

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G018840	Cucumber (Gy14) v1	cgycmaB0545
CmaCh04G018840	Wild cucumber (PI 183967)	cmacpiB766
CmaCh04G018840	Cucumber (Chinese Long) v2	cmacuB759
CmaCh04G018840	Melon (DHL92) v3.5.1	cmameB646
CmaCh04G018840	Watermelon (Charleston Gray)	cmawcgB628
CmaCh04G018840	Watermelon (97103) v1	cmawmB745
CmaCh04G018840	Bottle gourd (USVL1VR-Ls)	cmalsiB635
CmaCh04G018840	Melon (DHL92) v3.6.1	cmamedB730
CmaCh04G018840	Cucumber (Chinese Long) v3	cmacucB0898
CmaCh04G018840	Watermelon (97103) v2	cmawmbB726
CmaCh04G018840	Wax gourd	cmawgoB0913
CmaCh04G018840	Wax gourd	cmawgoB0876
CmaCh04G018840	Wax gourd	cmawgoB0904