Cp4.1LG01g16730 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g16730
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	40S ribosomal protein S9, putative
Location	Cp4.1LG01 : 10476322 .. 10477908 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATACAATTAAACCCTAGCTCCTCCCTCTTCAACCTCCACCATTCCGCTTGGTTGAAGCCCTAGCAGAGAGCATACCATGGTCCACGTCTCTTTCTACAGGAACTGTGAGTATGCTCAATTTACCATCTATTTTTTCCTTTCAATTTCTTCTCTTAATTGCTTCATTTCAATCTGGGAACCTACGGTTTCATCATATTAAATTGCATAATCTCAGATTTTCTAGGCTTAGATTCTTGTAGCTCAATACATTTTTACGACTGTTTTAAGCTGGAACTGGATGCCATTGTAAGTTTCACTTTCTGGACTCGACCTTCTAGGGTGTTATAAAATCAATGACGATAGTGGCTGTAAATGTTACAGAAAAATGTTTGAAAAACAATAATGCTTGGGTGATGTTTGCTTCTTCCTGCTTTTATATAGACCTAGGATCACTGAATTGTGGATTTGTCATTATATAGATGGGAAGACCTTCAAGAAACCTCGGCGCCCTTATGAAAAGGAGCGTCTGGATGCAGAGCTCAAACTTGTAGGTGAATATGGGCTTCGTTGTAAAAGAGAGCTATGGCGTGTTCAATATGCATTGAGCCGAATCCGAAATAATGCCAGGATGCTTTTGACGCTTGATGAAAAGAATCCACGAAGAATTTTTGAGGGAGAGGCCCTGCTTAGGAGGATGAACAGGTATGGTCTTTTGGATGAAAGCCAAAACAAGCTCGATTATGTCTTGGCACTTACTGTCGAGAATTTCCTTGAGCGTCGTCTCCAAACCCTTGTGTTCAAGTCGGGAATGGCAAAATCTATCCACCACGCTAGAGTGCTCATCAGGCAGAAGCATATAAGGTAGGGTGCCTCACTATCCATCTTTTTCCCAGAATGAAATAGAGTTCATATACAGTTTAACTCAAATATATTGCTTGATTAATGCTTGTAAACAACATTTCTTCTGCCGTTTTGTTGCTTGCATCGTTCTAGTTCATGATGATGCTCAATACATATAGCACATTTTTCTTCTTTGCCTTGATAGGGTAGGGAGGCAGGTAGTTAACATCCCCTCTTTCATGGTGAGGGTTGATTCCCAAAAGCACATAGACTTCTCTCTCACAAGTCCATTTGGAGGCGGACGTCCTGGACGGGTGAAGAGAAAGAACCAGAAGGCGGCTGCGAAAAAGGCTGCTGGCGGAGATGGAGATGAAGAAGAAGAGGATTGAGCTGTGGGCTTAGTTAAAAGTAGTGTTTTACTTCAATTTTGTTTTGTCTGTGTTTTCTTACGTCTTTTGAGCTTGTGTTTGGACTTCTACTTTGAGCTGTGACCGCCTTTTGTTTCTACCCTGTATTTGTTATTGGCTCAATTGAAGGTCTCACATGCCTTGGTTTTGTGTTCGAGTTGTAGAAAATCTCGTGGGATGTAGGAGAACTTTTAAATTGTTGGACTACATTGAGAAGACATGTAAAGCTAAGGTTCCTACAAAAGTAGAGTTTTTGTGTTCTTATTACGGTTTGTCCTAAGTTCTTTTACAGAGTTCTCCATTCCCTTTAATGCCTACTTCTCCAAAGATAAAGAGTTCTTCATTCCCTTTAATGCCTACT

mRNA sequence

ATACAATTAAACCCTAGCTCCTCCCTCTTCAACCTCCACCATTCCGCTTGGTTGAAGCCCTAGCAGAGAGCATACCATGGTCCACGTCTCTTTCTACAGGAACTATGGGAAGACCTTCAAGAAACCTCGGCGCCCTTATGAAAAGGAGCGTCTGGATGCAGAGCTCAAACTTGTAGGTGAATATGGGCTTCGTTGTAAAAGAGAGCTATGGCGTGTTCAATATGCATTGAGCCGAATCCGAAATAATGCCAGGATGCTTTTGACGCTTGATGAAAAGAATCCACGAAGAATTTTTGAGGGAGAGGCCCTGCTTAGGAGGATGAACAGGTATGGTCTTTTGGATGAAAGCCAAAACAAGCTCGATTATGTCTTGGCACTTACTGTCGAGAATTTCCTTGAGCGTCGTCTCCAAACCCTTGTGTTCAAGTCGGGAATGGCAAAATCTATCCACCACGCTAGAGTGCTCATCAGGCAGAAGCATATAAGGGTAGGGAGGCAGGTAGTTAACATCCCCTCTTTCATGGTGAGGGTTGATTCCCAAAAGCACATAGACTTCTCTCTCACAAGTCCATTTGGAGGCGGACGTCCTGGACGGGTGAAGAGAAAGAACCAGAAGGCGGCTGCGAAAAAGGCTGCTGGCGGAGATGGAGATGAAGAAGAAGAGGATTGAGCTGTGGGCTTAGTTAAAAGTAGTGTTTTACTTCAATTTTGTTTTGTCTGTGTTTTCTTACGTCTTTTGAGCTTGTGTTTGGACTTCTACTTTGAGCTGTGACCGCCTTTTGTTTCTACCCTGTATTTGTTATTGGCTCAATTGAAGGTCTCACATGCCTTGGTTTTGTGTTCGAGTTGTAGAAAATCTCGTGGGATGTAGGAGAACTTTTAAATTGTTGGACTACATTGAGAAGACATGTAAAGCTAAGGTTCCTACAAAAGTAGAGTTTTTGTGTTCTTATTACGGTTTGTCCTAAGTTCTTTTACAGAGTTCTCCATTCCCTTTAATGCCTACTTCTCCAAAGATAAAGAGTTCTTCATTCCCTTTAATGCCTACT

Coding sequence (CDS)

ATGGTCCACGTCTCTTTCTACAGGAACTATGGGAAGACCTTCAAGAAACCTCGGCGCCCTTATGAAAAGGAGCGTCTGGATGCAGAGCTCAAACTTGTAGGTGAATATGGGCTTCGTTGTAAAAGAGAGCTATGGCGTGTTCAATATGCATTGAGCCGAATCCGAAATAATGCCAGGATGCTTTTGACGCTTGATGAAAAGAATCCACGAAGAATTTTTGAGGGAGAGGCCCTGCTTAGGAGGATGAACAGGTATGGTCTTTTGGATGAAAGCCAAAACAAGCTCGATTATGTCTTGGCACTTACTGTCGAGAATTTCCTTGAGCGTCGTCTCCAAACCCTTGTGTTCAAGTCGGGAATGGCAAAATCTATCCACCACGCTAGAGTGCTCATCAGGCAGAAGCATATAAGGGTAGGGAGGCAGGTAGTTAACATCCCCTCTTTCATGGTGAGGGTTGATTCCCAAAAGCACATAGACTTCTCTCTCACAAGTCCATTTGGAGGCGGACGTCCTGGACGGGTGAAGAGAAAGAACCAGAAGGCGGCTGCGAAAAAGGCTGCTGGCGGAGATGGAGATGAAGAAGAAGAGGATTGA

Protein sequence

MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKAAGGDGDEEEED

Homology

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BLAST of Cp4.1LG01g16730 vs. Swiss-Prot
Match: RS92_ARATH (40S ribosomal protein S9-2 OS=Arabidopsis thaliana GN=RPS9C PE=1 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 7.4e-98
Identity = 178/197 (90.36%), Postives = 192/197 (97.46%), Query Frame = 1


Query: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60
           MV+V FYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQY LSRIRN AR 
Sbjct: 1   MVNVRFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYTLSRIRNAARE 60

Query: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120
           LLTLDEKNPRRIFEGEALLRRMNRYGLLDE+QNKLDYVLALTVENFLERRLQT+VFKSGM
Sbjct: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDETQNKLDYVLALTVENFLERRLQTIVFKSGM 120

Query: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK 180
           AKSIHHARVLIRQ+HIRVGRQ+VNIPSFMVRV+SQKH+DFSLTSPFGGGRPGRVKR+N++
Sbjct: 121 AKSIHHARVLIRQRHIRVGRQLVNIPSFMVRVESQKHVDFSLTSPFGGGRPGRVKRRNER 180

Query: 181 AAAKKAAGGDGDEEEED 198
           A AKKA+GGDGDE++E+
Sbjct: 181 AGAKKASGGDGDEDDEE 197

[Close]

BLAST of Cp4.1LG01g16730 vs. Swiss-Prot
Match: RS91_ARATH (40S ribosomal protein S9-1 OS=Arabidopsis thaliana GN=RPS9B PE=1 SV=1)

HSP 1 Score: 342.0 bits (876), Expect = 4.2e-93
Identity = 173/198 (87.37%), Postives = 190/198 (95.96%), Query Frame = 1


Query: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60
           MVHV +YRNYGKTFK PRRPYEKERLD+ELKLVGEYGLR KRELWRVQY+LSRIRN AR 
Sbjct: 1   MVHVCYYRNYGKTFKGPRRPYEKERLDSELKLVGEYGLRNKRELWRVQYSLSRIRNAARD 60

Query: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120
           LLTLDEK+PRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQT+VFKSGM
Sbjct: 61  LLTLDEKSPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTIVFKSGM 120

Query: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK 180
           AKSIHH+RVLIRQ+HIRVG+Q+VNIPSFMVR+DSQKHIDF+LTSPFGGGRPGRVKR+N+K
Sbjct: 121 AKSIHHSRVLIRQRHIRVGKQLVNIPSFMVRLDSQKHIDFALTSPFGGGRPGRVKRRNEK 180

Query: 181 AAAKKAAGG---DGDEEE 196
           +A+KKA+GG   DGD+EE
Sbjct: 181 SASKKASGGGDADGDDEE 198

[Close]

BLAST of Cp4.1LG01g16730 vs. Swiss-Prot
Match: RS9_PODAS (40S ribosomal protein S9 OS=Podospora anserina GN=RPS9 PE=3 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 4.5e-71
Identity = 138/190 (72.63%), Postives = 163/190 (85.79%), Query Frame = 1


Query: 8   RNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEK 67
           R+Y KT K PRRP+E  RLD+ELKLVGEYGLR KRE+WRV   LS+IR  AR LLTLDEK
Sbjct: 4   RSYSKTAKVPRRPFEAARLDSELKLVGEYGLRNKREVWRVLLTLSKIRRAARELLTLDEK 63

Query: 68  NPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHA 127
           +P+R+FEG AL+RR+ R G+LDES+ KLDYVLAL  E+FLERRLQTLV+K G+AKSIHHA
Sbjct: 64  DPKRLFEGNALIRRLVRVGVLDESRMKLDYVLALKAEDFLERRLQTLVYKLGLAKSIHHA 123

Query: 128 RVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKAA 187
           RVLIRQ+HIRVG+Q+VN+PSF+VR+DSQKHIDF+LTSPFGGGRPGRV+RK     AK A 
Sbjct: 124 RVLIRQRHIRVGKQIVNVPSFVVRLDSQKHIDFALTSPFGGGRPGRVRRKK----AKAAE 183

Query: 188 GGDGDEEEED 198
           GGDGD EE++
Sbjct: 184 GGDGDAEEDE 189

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BLAST of Cp4.1LG01g16730 vs. Swiss-Prot
Match: RS9_DROME (40S ribosomal protein S9 OS=Drosophila melanogaster GN=RpS9 PE=1 SV=2)

HSP 1 Score: 260.8 bits (665), Expect = 1.2e-68
Identity = 135/188 (71.81%), Postives = 158/188 (84.04%), Query Frame = 1


Query: 10  YGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNP 69
           + KT+  PRRPYEK RLD ELK++GEYGLR KRE+WRV+YAL++IR  AR LLTLDEK+ 
Sbjct: 10  FSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYALAKIRKAARELLTLDEKDE 69

Query: 70  RRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARV 129
           +R+F+G ALLRR+ R G+LDES+ KLDYVL L +E+FLERRLQT VFK G+AKSIHHARV
Sbjct: 70  KRLFQGNALLRRLVRIGVLDESRMKLDYVLGLKIEDFLERRLQTQVFKLGLAKSIHHARV 129

Query: 130 LIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKAAGG 189
           LIRQ+HIRV +QVVNIPSF+VR+DSQKHIDFSL SPFGGGRPGRVKRKN K    +  GG
Sbjct: 130 LIRQRHIRVRKQVVNIPSFVVRLDSQKHIDFSLKSPFGGGRPGRVKRKNLK--KNQGGGG 189

Query: 190 DGDEEEED 198
              EEEED
Sbjct: 190 GAAEEEED 195

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BLAST of Cp4.1LG01g16730 vs. Swiss-Prot
Match: RS9_PAPAN (40S ribosomal protein S9 OS=Papio anubis GN=RPS9 PE=3 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 1.6e-68
Identity = 133/186 (71.51%), Postives = 157/186 (84.41%), Query Frame = 1


Query: 12  KTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARMLLTLDEKNPRR 71
           KT+  PRRP+EK RLD ELKL+GEYGLR KRE+WRV++ L++IR  AR LLTLDEK+PRR
Sbjct: 11  KTYVTPRRPFEKSRLDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRR 70

Query: 72  IFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLI 131
           +FEG ALLRR+ R G+LDE + KLDY+L L +E+FLERRLQT VFK G+AKSIHHARVLI
Sbjct: 71  LFEGNALLRRLVRIGVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLI 130

Query: 132 RQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQKAAAKKAAGGDG 191
           RQ+HIRV +QVVNIPSF+VR+DSQKHIDFSL SP+GGGRPGRVKRKN K    +   G G
Sbjct: 131 RQRHIRVRKQVVNIPSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKKG--QGGAGAG 190

Query: 192 DEEEED 198
           D+EEED
Sbjct: 191 DDEEED 194

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BLAST of Cp4.1LG01g16730 vs. TrEMBL
Match: A0A0A0KSN1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G604980 PE=3 SV=1)

HSP 1 Score: 384.8 bits (987), Expect = 6.3e-104
Identity = 196/197 (99.49%), Postives = 197/197 (100.00%), Query Frame = 1


Query: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60
           MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM
Sbjct: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60

Query: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120
           LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM
Sbjct: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120

Query: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK 180
           AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK
Sbjct: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK 180

Query: 181 AAAKKAAGGDGDEEEED 198
           AAAKKAAGGDGDEE+ED
Sbjct: 181 AAAKKAAGGDGDEEDED 197

[Close]

BLAST of Cp4.1LG01g16730 vs. TrEMBL
Match: W9QV98_9ROSA (40S ribosomal protein S9-2 OS=Morus notabilis GN=L484_006534 PE=3 SV=1)

HSP 1 Score: 380.2 bits (975), Expect = 1.6e-102
Identity = 194/197 (98.48%), Postives = 196/197 (99.49%), Query Frame = 1


Query: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60
           MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM
Sbjct: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60

Query: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120
           LLTLDEKNPRRIFEGEALLRRMNR+GLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM
Sbjct: 61  LLTLDEKNPRRIFEGEALLRRMNRHGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120

Query: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK 180
           AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK
Sbjct: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK 180

Query: 181 AAAKKAAGGDGDEEEED 198
           AAAKKAAGGDGD +EED
Sbjct: 181 AAAKKAAGGDGDGDEED 197

[Close]

BLAST of Cp4.1LG01g16730 vs. TrEMBL
Match: D7FBA7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0108g00460 PE=3 SV=1)

HSP 1 Score: 377.5 bits (968), Expect = 1.0e-101
Identity = 191/197 (96.95%), Postives = 195/197 (98.98%), Query Frame = 1


Query: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60
           MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQY LSRIRNNARM
Sbjct: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYVLSRIRNNARM 60

Query: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120
           LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM
Sbjct: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120

Query: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK 180
           AKSIHHARVLIRQ+HIRVGRQVVNIPSF+VR+DSQKHIDFSLTSP GGGRPGRVKRKNQK
Sbjct: 121 AKSIHHARVLIRQRHIRVGRQVVNIPSFLVRMDSQKHIDFSLTSPLGGGRPGRVKRKNQK 180

Query: 181 AAAKKAAGGDGDEEEED 198
           AAAKKAAGGDGDEE+ED
Sbjct: 181 AAAKKAAGGDGDEEDED 197

[Close]

BLAST of Cp4.1LG01g16730 vs. TrEMBL
Match: A0A059ARY5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I01938 PE=3 SV=1)

HSP 1 Score: 375.9 bits (964), Expect = 2.9e-101
Identity = 190/197 (96.45%), Postives = 195/197 (98.98%), Query Frame = 1


Query: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60
           MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQY LSRIRNNARM
Sbjct: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYVLSRIRNNARM 60

Query: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120
           LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM
Sbjct: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120

Query: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK 180
           AKSIHHARVLIRQ+HIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKN K
Sbjct: 121 AKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNTK 180

Query: 181 AAAKKAAGGDGDEEEED 198
           AA+KKA+GGDG+EE+ED
Sbjct: 181 AASKKASGGDGEEEDED 197

[Close]

BLAST of Cp4.1LG01g16730 vs. TrEMBL
Match: A0A067K8C2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11609 PE=3 SV=1)

HSP 1 Score: 375.6 bits (963), Expect = 3.8e-101
Identity = 190/197 (96.45%), Postives = 196/197 (99.49%), Query Frame = 1


Query: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60
           MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRN ARM
Sbjct: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNAARM 60

Query: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120
           LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM
Sbjct: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120

Query: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK 180
           AKSIHHARVLIRQ+HIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQ+
Sbjct: 121 AKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQR 180

Query: 181 AAAKKAAGGDGDEEEED 198
           AA+KKA+GGDGDEE+E+
Sbjct: 181 AASKKASGGDGDEEDEE 197

[Close]

BLAST of Cp4.1LG01g16730 vs. TAIR10
Match: AT5G39850.1 (AT5G39850.1 Ribosomal protein S4)

HSP 1 Score: 357.8 bits (917), Expect = 4.2e-99
Identity = 178/197 (90.36%), Postives = 192/197 (97.46%), Query Frame = 1


Query: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60
           MV+V FYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQY LSRIRN AR 
Sbjct: 1   MVNVRFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYTLSRIRNAARE 60

Query: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120
           LLTLDEKNPRRIFEGEALLRRMNRYGLLDE+QNKLDYVLALTVENFLERRLQT+VFKSGM
Sbjct: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDETQNKLDYVLALTVENFLERRLQTIVFKSGM 120

Query: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK 180
           AKSIHHARVLIRQ+HIRVGRQ+VNIPSFMVRV+SQKH+DFSLTSPFGGGRPGRVKR+N++
Sbjct: 121 AKSIHHARVLIRQRHIRVGRQLVNIPSFMVRVESQKHVDFSLTSPFGGGRPGRVKRRNER 180

Query: 181 AAAKKAAGGDGDEEEED 198
           A AKKA+GGDGDE++E+
Sbjct: 181 AGAKKASGGDGDEDDEE 197

[Close]

BLAST of Cp4.1LG01g16730 vs. TAIR10
Match: AT5G15200.1 (AT5G15200.1 Ribosomal protein S4)

HSP 1 Score: 342.0 bits (876), Expect = 2.4e-94
Identity = 173/198 (87.37%), Postives = 190/198 (95.96%), Query Frame = 1


Query: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60
           MVHV +YRNYGKTFK PRRPYEKERLD+ELKLVGEYGLR KRELWRVQY+LSRIRN AR 
Sbjct: 1   MVHVCYYRNYGKTFKGPRRPYEKERLDSELKLVGEYGLRNKRELWRVQYSLSRIRNAARD 60

Query: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120
           LLTLDEK+PRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQT+VFKSGM
Sbjct: 61  LLTLDEKSPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTIVFKSGM 120

Query: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK 180
           AKSIHH+RVLIRQ+HIRVG+Q+VNIPSFMVR+DSQKHIDF+LTSPFGGGRPGRVKR+N+K
Sbjct: 121 AKSIHHSRVLIRQRHIRVGKQLVNIPSFMVRLDSQKHIDFALTSPFGGGRPGRVKRRNEK 180

Query: 181 AAAKKAAGG---DGDEEE 196
           +A+KKA+GG   DGD+EE
Sbjct: 181 SASKKASGGGDADGDDEE 198

[Close]

BLAST of Cp4.1LG01g16730 vs. NCBI nr
Match: gi|449434792|ref|XP_004135180.1| (PREDICTED: 40S ribosomal protein S9-2 [Cucumis sativus])

HSP 1 Score: 384.8 bits (987), Expect = 9.0e-104
Identity = 196/197 (99.49%), Postives = 197/197 (100.00%), Query Frame = 1


Query: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60
           MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM
Sbjct: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60

Query: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120
           LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM
Sbjct: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120

Query: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK 180
           AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK
Sbjct: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK 180

Query: 181 AAAKKAAGGDGDEEEED 198
           AAAKKAAGGDGDEE+ED
Sbjct: 181 AAAKKAAGGDGDEEDED 197

[Close]

BLAST of Cp4.1LG01g16730 vs. NCBI nr
Match: gi|719965609|ref|XP_010256989.1| (PREDICTED: 40S ribosomal protein S9-2-like [Nelumbo nucifera])

HSP 1 Score: 381.3 bits (978), Expect = 1.0e-102
Identity = 194/197 (98.48%), Postives = 196/197 (99.49%), Query Frame = 1


Query: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60
           MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM
Sbjct: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60

Query: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120
           LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM
Sbjct: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120

Query: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK 180
           AKSIHHARVLIRQ+HIRVGRQVVNIPSFMVRVDSQKHIDFSLTSP GGGRPGRVKRKNQK
Sbjct: 121 AKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPLGGGRPGRVKRKNQK 180

Query: 181 AAAKKAAGGDGDEEEED 198
           AAAKKAAGGDGDEE+ED
Sbjct: 181 AAAKKAAGGDGDEEDED 197

[Close]

BLAST of Cp4.1LG01g16730 vs. NCBI nr
Match: gi|1009132749|ref|XP_015883538.1| (PREDICTED: 40S ribosomal protein S9-2 [Ziziphus jujuba])

HSP 1 Score: 381.3 bits (978), Expect = 1.0e-102
Identity = 193/197 (97.97%), Postives = 197/197 (100.00%), Query Frame = 1


Query: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60
           MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM
Sbjct: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60

Query: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120
           LLTLDEKNPRRIFEGEALLRRMNRYGLLDE+QNKLDYVLALTVENFLERRLQTLVFKSGM
Sbjct: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDENQNKLDYVLALTVENFLERRLQTLVFKSGM 120

Query: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK 180
           AKSIHHARVLIRQ+HIRVGRQVVNIPSFMVR+DSQKHIDFSLTSPFGGGRPGRVKRKNQK
Sbjct: 121 AKSIHHARVLIRQRHIRVGRQVVNIPSFMVRLDSQKHIDFSLTSPFGGGRPGRVKRKNQK 180

Query: 181 AAAKKAAGGDGDEEEED 198
           AAAKKAAGGDGDEE+ED
Sbjct: 181 AAAKKAAGGDGDEEDED 197

[Close]

BLAST of Cp4.1LG01g16730 vs. NCBI nr
Match: gi|703079680|ref|XP_010091216.1| (40S ribosomal protein S9-2 [Morus notabilis])

HSP 1 Score: 380.2 bits (975), Expect = 2.2e-102
Identity = 194/197 (98.48%), Postives = 196/197 (99.49%), Query Frame = 1


Query: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60
           MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM
Sbjct: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60

Query: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120
           LLTLDEKNPRRIFEGEALLRRMNR+GLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM
Sbjct: 61  LLTLDEKNPRRIFEGEALLRRMNRHGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120

Query: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK 180
           AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK
Sbjct: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK 180

Query: 181 AAAKKAAGGDGDEEEED 198
           AAAKKAAGGDGD +EED
Sbjct: 181 AAAKKAAGGDGDGDEED 197

[Close]

BLAST of Cp4.1LG01g16730 vs. NCBI nr
Match: gi|1009124995|ref|XP_015879372.1| (PREDICTED: 40S ribosomal protein S9-2 [Ziziphus jujuba])

HSP 1 Score: 379.0 bits (972), Expect = 5.0e-102
Identity = 191/197 (96.95%), Postives = 197/197 (100.00%), Query Frame = 1


Query: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60
           MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM
Sbjct: 1   MVHVSFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARM 60

Query: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGM 120
           LLTLDEKNPRRIFEGEALLRRMNRYGLL+E+QNKLDYVLALTVENFLERRLQT+VFK+GM
Sbjct: 61  LLTLDEKNPRRIFEGEALLRRMNRYGLLEENQNKLDYVLALTVENFLERRLQTIVFKAGM 120

Query: 121 AKSIHHARVLIRQKHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK 180
           AKSIHHARVLIRQ+HIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK
Sbjct: 121 AKSIHHARVLIRQRHIRVGRQVVNIPSFMVRVDSQKHIDFSLTSPFGGGRPGRVKRKNQK 180

Query: 181 AAAKKAAGGDGDEEEED 198
           AAAKKAAGGDGDEE+ED
Sbjct: 181 AAAKKAAGGDGDEEDED 197

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g16730 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RS92_ARATH	7.4e-98	90.36	40S ribosomal protein S9-2 OS=Arabidopsis thaliana GN=RPS9C PE=1 SV=1	[more]
RS91_ARATH	4.2e-93	87.37	40S ribosomal protein S9-1 OS=Arabidopsis thaliana GN=RPS9B PE=1 SV=1	[more]
RS9_PODAS	4.5e-71	72.63	40S ribosomal protein S9 OS=Podospora anserina GN=RPS9 PE=3 SV=1	[more]
RS9_DROME	1.2e-68	71.81	40S ribosomal protein S9 OS=Drosophila melanogaster GN=RpS9 PE=1 SV=2	[more]
RS9_PAPAN	1.6e-68	71.51	40S ribosomal protein S9 OS=Papio anubis GN=RPS9 PE=3 SV=1	[more]

BLAST of Cp4.1LG01g16730 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KSN1_CUCSA	6.3e-104	99.49	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G604980 PE=3 SV=1	[more]
W9QV98_9ROSA	1.6e-102	98.48	40S ribosomal protein S9-2 OS=Morus notabilis GN=L484_006534 PE=3 SV=1	[more]
D7FBA7_VITVI	1.0e-101	96.95	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0108g00460 PE=3 SV=...	[more]
A0A059ARY5_EUCGR	2.9e-101	96.45	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I01938 PE=3 SV=1	[more]
A0A067K8C2_JATCU	3.8e-101	96.45	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11609 PE=3 SV=1	[more]

BLAST of Cp4.1LG01g16730 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G39850.1	4.2e-99	90.36	Ribosomal protein S4	[more]
AT5G15200.1	2.4e-94	87.37	Ribosomal protein S4	[more]

BLAST of Cp4.1LG01g16730 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449434792\|ref\|XP_004135180.1\|	9.0e-104	99.49	PREDICTED: 40S ribosomal protein S9-2 [Cucumis sativus]	[more]
gi\|719965609\|ref\|XP_010256989.1\|	1.0e-102	98.48	PREDICTED: 40S ribosomal protein S9-2-like [Nelumbo nucifera]	[more]
gi\|1009132749\|ref\|XP_015883538.1\|	1.0e-102	97.97	PREDICTED: 40S ribosomal protein S9-2 [Ziziphus jujuba]	[more]
gi\|703079680\|ref\|XP_010091216.1\|	2.2e-102	98.48	40S ribosomal protein S9-2 [Morus notabilis]	[more]
gi\|1009124995\|ref\|XP_015879372.1\|	5.0e-102	96.95	PREDICTED: 40S ribosomal protein S9-2 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0015935	small ribosomal subunit
GO:0005622	intracellular

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome
GO:0003723	RNA binding
GO:0019843	rRNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR022801	Ribosomal_S4/S9
IPR018079	Ribosomal_S4_CS
IPR005710	Ribosomal_S4/S9_euk/arc
IPR002942	S4_RNA-bd
IPR001912	Ribosomal_S4/S9_N

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0005622	intracellular
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g16730.1	Cp4.1LG01g16730.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001912	Ribosomal protein S4/S9, N-terminal	PFAM	PF00163	Ribosomal_S4	coord: 8..64 score: 3.
IPR001912	Ribosomal protein S4/S9, N-terminal	SMART	SM01390	Ribosomal_S4_2	coord: 8..108 score: 6.8
IPR002942	RNA-binding S4 domain	GENE3D	G3DSA:3.10.290.10		coord: 108..155 score: 1.6
IPR002942	RNA-binding S4 domain	PFAM	PF01479	S4	coord: 109..152 score: 4.1
IPR002942	RNA-binding S4 domain	SMART	SM00363	s4_6	coord: 109..180 score: 2.
IPR002942	RNA-binding S4 domain	PROFILE	PS50889	S4	coord: 109..180 score: 11
IPR005710	Ribosomal protein S4/S9, eukaryotic/archaeal	TIGRFAMs	TIGR01018	TIGR01018	coord: 11..166 score: 1.9
IPR018079	Ribosomal protein S4, conserved site	PROSITE	PS00632	RIBOSOMAL_S4	coord: 107..131 scor
IPR022801	Ribosomal protein S4/S9	PANTHER	PTHR11831	30S 40S RIBOSOMAL PROTEIN	coord: 1..197 score: 1.9E
None	No IPR available	PANTHER	PTHR11831:SF13	SUBFAMILY NOT NAMED	coord: 1..197 score: 1.9E
None	No IPR available	unknown	SSF55174	Alpha-L RNA-binding motif	coord: 12..159 score: 3.83

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g16730	CmaCh04G018840	Cucurbita maxima (Rimu)	cmacpeB720
Cp4.1LG01g16730	CmoCh04G019880	Cucurbita moschata (Rifu)	cmocpeB673

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g16730	Bottle gourd (USVL1VR-Ls)	cpelsiB319
Cp4.1LG01g16730	Watermelon (Charleston Gray)	cpewcgB365
Cp4.1LG01g16730	Watermelon (Charleston Gray)	cpewcgB369
Cp4.1LG01g16730	Watermelon (97103) v1	cpewmB455