CmoCh04G017950 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGCAGCTCCCAAGACAAATCCTCCATGGATTTGGTTCAACCAAATGACCATCTTTGTTATGTCAAATGCAACTTTTGCAACACTCTTCTCGCGGTAACCTTCTCTCGTCTTTACTCAATTGAGTATACGTGTTCATGGCTTTCCTTTTGATGATCGTGTCTTTTATTTATATACCCATGATTTTTTCTTCAATTAGCTAACATAGGACTCTAACAATCCTCCCCGAGCCTCTATGACTGAACATCCGTGGTAAAACCCTATTAGATTACCAATGTGTTCTAGAGAAAAGGGGTTGTCTGGATAGTGCTAGACGGATAGATAACTCAATCCTAGTTTGCTCGAGAAGAGTATTGTTGGAGTCCATTAGCGTGAGGACTTTTGGAGAAACCAAAAGAAAAACCACAAGCTAAATTTGAGTTTGATGGCTAAATATGGTTGGATTTTGTTGGGTTTGGAAGGTTGGGATACCATGCAGACGTTTGTTGGAGACAGTGACAGTGAAATGTGGTAATTGTAGTAATCTGTCGTTTTTGAGCACAAGACCACCTTTACAAGGCCAACGCATTGATCATCATCCTCTCACTTTTCAGGTGACCTCCACAAATAGTTAGAGTGATATTGATAATTTTTCAATGATCAAACTAATTGATATTCATCTTGTTACAATCAGCCTCAGGTTGGCTTCTCTTATGATACTCGAAAGGGTGCATCGATATCGTCTACATCGTCGTCATCGTCTTCAATGCCAAATGAACCTCCCTCTCCAAATTTTGTTGTCAAACGTATGTTTTACTGTTCTATTACTAATTCAAGTTGTTCTTAATATAATCCATCCAAGATTAAATTTTTATTCATGAATCTTAAAGAAAATATTTGAGTTCATTGTTAAATTTCAAAAACAAAAATAAGATTTTAAATAGACTAGGATGAATAAAAAAAGAATAAAAAAATATATTTCAATTTTTATTGTATCTCAAAAATACCCATAAACTTTTAAAAATACTAGTTTTAAATTAAAACAATTAATACTTTCTTTAAATTTTTAATGTGTTTCAAAAACACCCTAGAAGTTTCAAACAAATCAAGTAATTAGATAACCATCTTTCGATTTTTTAAAAATTCAAAAATACATTCACCGTTAGTACAACGTTTAAAAAATATTCATAAACTTTTCAAAAATCCTTAAAACGTTTATAGATAATTTAAAAGATGTCGATAGACGATTTTCATTAATATATTAACCGTAAGAATATTTTAAATTTTTTATAATAAAGATAAAGTTGGTTAATGTTATTTTTATTATTTTGTAAACATATTACTATCCTTAAATTTAAATTTATTTTTGAACTCTTTAAAAAACTTGAAAGGTATATGTGAGTTTTAAAAGCTCAGGAGTATTTAAACTATTAAAATACTATCGATTTCCATTCAAAATGAATGACGGACATTTTTCTTTTTTTTTTTGAAAGTTTAAGGATATTATTGAAAAGTTTAACCGTATTTTTTGAAACAAAGAAGTAATTAAAACATCGAAAGTGTTCTTATTTTATTTTTATTTTATTTTATTTTTTTGCAGCTCCGGAGAAGAAACACAGACTCCCATCAGCTTACAATTGTTTCATGAAGTAAGAACAGTTCATTGATTAAGCAGAAAAGGAATAAAAAAAAAAAAAAAAAAAAAAAATTGTTAGTAGTCTTCTTGACAATATATTGTTGTGTTAGGGAGGAGATTCAACGCATCAAAGCTGCCAACCCAGAAATCCCACATCGAGAAGCATTCAGTGCCGCAGCAAAAAACGTAATTTATTATTATTTTTTCTAATCATTTATTTTCTTAATTCCTTCGAAATAAGTTAACGTTGTCACAACAGTGGGCAAGGTACATTCCAAATTCCGCAGCTGGGTCGGTTTCTGGGACTCCCAACGACGTAAGAAAAAGGGTATTATTGTACTTTTACATAAATAAAGCAACTATTTTTGTAGTTCATATTTAAGGTTCTTAGGGTTTTCAAACTTGCAGGAATGATACGGTTTAGAGCACTGGAAGAATCGGACATATCAAATGGCTGTCTGCTCTAG ATGAGCAGCTCCCAAGACAAATCCTCCATGGATTTGGTTCAACCAAATGACCATCTTTGTTATGTCAAATGCAACTTTTGCAACACTCTTCTCGCGGTTGGGATACCATGCAGACGTTTGTTGGAGACAGTGACAGTGAAATGTGGTAATTGTAGTAATCTGTCGTTTTTGAGCACAAGACCACCTTTACAAGGCCAACGCATTGATCATCATCCTCTCACTTTTCAGCCTCAGGTTGGCTTCTCTTATGATACTCGAAAGGGTGCATCGATATCGTCTACATCGTCGTCATCGTCTTCAATGCCAAATGAACCTCCCTCTCCAAATTTTGTTGTCAAACCTCCGGAGAAGAAACACAGACTCCCATCAGCTTACAATTGTTTCATGAAGGAGGAGATTCAACGCATCAAAGCTGCCAACCCAGAAATCCCACATCGAGAAGCATTCAGTGCCGCAGCAAAAAACTGGGCAAGGTACATTCCAAATTCCGCAGCTGGGTCGGTTTCTGGGACTCCCAACGACGTTCTTAGGGTTTTCAAACTTGCAGGAATGATACGGTTTAGAGCACTGGAAGAATCGGACATATCAAATGGCTGTCTGCTCTAG ATGAGCAGCTCCCAAGACAAATCCTCCATGGATTTGGTTCAACCAAATGACCATCTTTGTTATGTCAAATGCAACTTTTGCAACACTCTTCTCGCGGTTGGGATACCATGCAGACGTTTGTTGGAGACAGTGACAGTGAAATGTGGTAATTGTAGTAATCTGTCGTTTTTGAGCACAAGACCACCTTTACAAGGCCAACGCATTGATCATCATCCTCTCACTTTTCAGCCTCAGGTTGGCTTCTCTTATGATACTCGAAAGGGTGCATCGATATCGTCTACATCGTCGTCATCGTCTTCAATGCCAAATGAACCTCCCTCTCCAAATTTTGTTGTCAAACCTCCGGAGAAGAAACACAGACTCCCATCAGCTTACAATTGTTTCATGAAGGAGGAGATTCAACGCATCAAAGCTGCCAACCCAGAAATCCCACATCGAGAAGCATTCAGTGCCGCAGCAAAAAACTGGGCAAGGTACATTCCAAATTCCGCAGCTGGGTCGGTTTCTGGGACTCCCAACGACGTTCTTAGGGTTTTCAAACTTGCAGGAATGATACGGTTTAGAGCACTGGAAGAATCGGACATATCAAATGGCTGTCTGCTCTAG
BLAST of CmoCh04G017950 vs. Swiss-Prot
Match: CRC_ARATH (Protein CRABS CLAW OS=Arabidopsis thaliana GN=CRC PE=1 SV=2) HSP 1 Score: 201.4 bits (511), Expect = 9.1e-51 Identity = 105/157 (66.88%), Postives = 122/157 (77.71%), Query Frame = 1
BLAST of CmoCh04G017950 vs. Swiss-Prot
Match: YABDL_ORYSJ (Protein DROOPING LEAF OS=Oryza sativa subsp. japonica GN=DL PE=1 SV=1) HSP 1 Score: 183.3 bits (464), Expect = 2.6e-45 Identity = 98/170 (57.65%), Postives = 121/170 (71.18%), Query Frame = 1
BLAST of CmoCh04G017950 vs. Swiss-Prot
Match: YAB3_ARATH (Axial regulator YABBY 3 OS=Arabidopsis thaliana GN=YAB3 PE=1 SV=1) HSP 1 Score: 129.0 bits (323), Expect = 5.7e-29 Identity = 83/195 (42.56%), Postives = 99/195 (50.77%), Query Frame = 1
BLAST of CmoCh04G017950 vs. Swiss-Prot
Match: YAB4_ORYSJ (Protein YABBY 4 OS=Oryza sativa subsp. japonica GN=YAB4 PE=2 SV=1) HSP 1 Score: 126.7 bits (317), Expect = 2.8e-28 Identity = 82/205 (40.00%), Postives = 108/205 (52.68%), Query Frame = 1
BLAST of CmoCh04G017950 vs. Swiss-Prot
Match: YAB4_ORYSI (Protein YABBY 4 OS=Oryza sativa subsp. indica GN=YAB4 PE=3 SV=1) HSP 1 Score: 126.7 bits (317), Expect = 2.8e-28 Identity = 82/205 (40.00%), Postives = 108/205 (52.68%), Query Frame = 1
BLAST of CmoCh04G017950 vs. TrEMBL
Match: A0A0A0KQW3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G606780 PE=4 SV=1) HSP 1 Score: 274.2 bits (700), Expect = 1.2e-70 Identity = 146/177 (82.49%), Postives = 159/177 (89.83%), Query Frame = 1
BLAST of CmoCh04G017950 vs. TrEMBL
Match: A0A067KYR0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15738 PE=4 SV=1) HSP 1 Score: 251.5 bits (641), Expect = 8.5e-64 Identity = 132/178 (74.16%), Postives = 149/178 (83.71%), Query Frame = 1
BLAST of CmoCh04G017950 vs. TrEMBL
Match: B9REB6_RICCO (Protein CRABS CLAW, putative OS=Ricinus communis GN=RCOM_1620070 PE=4 SV=1) HSP 1 Score: 245.4 bits (625), Expect = 6.1e-62 Identity = 128/167 (76.65%), Postives = 144/167 (86.23%), Query Frame = 1
BLAST of CmoCh04G017950 vs. TrEMBL
Match: D7T9Z4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g00140 PE=4 SV=1) HSP 1 Score: 240.4 bits (612), Expect = 2.0e-60 Identity = 126/165 (76.36%), Postives = 141/165 (85.45%), Query Frame = 1
BLAST of CmoCh04G017950 vs. TrEMBL
Match: A0A0D2NCW1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G146700 PE=4 SV=1) HSP 1 Score: 240.0 bits (611), Expect = 2.6e-60 Identity = 126/171 (73.68%), Postives = 140/171 (81.87%), Query Frame = 1
BLAST of CmoCh04G017950 vs. TAIR10
Match: AT1G69180.1 (AT1G69180.1 Plant-specific transcription factor YABBY family protein) HSP 1 Score: 201.4 bits (511), Expect = 5.1e-52 Identity = 105/157 (66.88%), Postives = 122/157 (77.71%), Query Frame = 1
BLAST of CmoCh04G017950 vs. TAIR10
Match: AT4G00180.1 (AT4G00180.1 Plant-specific transcription factor YABBY family protein) HSP 1 Score: 129.0 bits (323), Expect = 3.2e-30 Identity = 83/195 (42.56%), Postives = 99/195 (50.77%), Query Frame = 1
BLAST of CmoCh04G017950 vs. TAIR10
Match: AT2G45190.1 (AT2G45190.1 Plant-specific transcription factor YABBY family protein) HSP 1 Score: 126.3 bits (316), Expect = 2.1e-29 Identity = 79/179 (44.13%), Postives = 101/179 (56.42%), Query Frame = 1
BLAST of CmoCh04G017950 vs. TAIR10
Match: AT2G26580.1 (AT2G26580.1 plant-specific transcription factor YABBY family protein) HSP 1 Score: 125.9 bits (315), Expect = 2.7e-29 Identity = 66/147 (44.90%), Postives = 87/147 (59.18%), Query Frame = 1
BLAST of CmoCh04G017950 vs. TAIR10
Match: AT1G08465.1 (AT1G08465.1 Plant-specific transcription factor YABBY family protein) HSP 1 Score: 124.0 bits (310), Expect = 1.0e-28 Identity = 71/153 (46.41%), Postives = 95/153 (62.09%), Query Frame = 1
BLAST of CmoCh04G017950 vs. NCBI nr
Match: gi|659091256|ref|XP_008446454.1| (PREDICTED: protein CRABS CLAW [Cucumis melo]) HSP 1 Score: 274.2 bits (700), Expect = 1.8e-70 Identity = 146/177 (82.49%), Postives = 159/177 (89.83%), Query Frame = 1
BLAST of CmoCh04G017950 vs. NCBI nr
Match: gi|802568623|ref|XP_012067815.1| (PREDICTED: protein CRABS CLAW isoform X1 [Jatropha curcas]) HSP 1 Score: 255.8 bits (652), Expect = 6.5e-65 Identity = 133/170 (78.24%), Postives = 149/170 (87.65%), Query Frame = 1
BLAST of CmoCh04G017950 vs. NCBI nr
Match: gi|802568654|ref|XP_012067816.1| (PREDICTED: protein CRABS CLAW isoform X2 [Jatropha curcas]) HSP 1 Score: 253.8 bits (647), Expect = 2.5e-64 Identity = 132/170 (77.65%), Postives = 148/170 (87.06%), Query Frame = 1
BLAST of CmoCh04G017950 vs. NCBI nr
Match: gi|643734661|gb|KDP41331.1| (hypothetical protein JCGZ_15738 [Jatropha curcas]) HSP 1 Score: 251.5 bits (641), Expect = 1.2e-63 Identity = 132/178 (74.16%), Postives = 149/178 (83.71%), Query Frame = 1
BLAST of CmoCh04G017950 vs. NCBI nr
Match: gi|223549235|gb|EEF50724.1| (Protein CRABS CLAW, putative [Ricinus communis]) HSP 1 Score: 245.4 bits (625), Expect = 8.7e-62 Identity = 128/167 (76.65%), Postives = 144/167 (86.23%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene:
The following block(s) are covering this gene:
|