CmoCh04G017950.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G017950.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Plant-specific transcription factor YABBY family protein
Location	Cmo_Chr04 : 9028899 .. 9030980 (+)
Sequence length	606

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCAGCTCCCAAGACAAATCCTCCATGGATTTGGTTCAACCAAATGACCATCTTTGTTATGTCAAATGCAACTTTTGCAACACTCTTCTCGCGGTAACCTTCTCTCGTCTTTACTCAATTGAGTATACGTGTTCATGGCTTTCCTTTTGATGATCGTGTCTTTTATTTATATACCCATGATTTTTTCTTCAATTAGCTAACATAGGACTCTAACAATCCTCCCCGAGCCTCTATGACTGAACATCCGTGGTAAAACCCTATTAGATTACCAATGTGTTCTAGAGAAAAGGGGTTGTCTGGATAGTGCTAGACGGATAGATAACTCAATCCTAGTTTGCTCGAGAAGAGTATTGTTGGAGTCCATTAGCGTGAGGACTTTTGGAGAAACCAAAAGAAAAACCACAAGCTAAATTTGAGTTTGATGGCTAAATATGGTTGGATTTTGTTGGGTTTGGAAGGTTGGGATACCATGCAGACGTTTGTTGGAGACAGTGACAGTGAAATGTGGTAATTGTAGTAATCTGTCGTTTTTGAGCACAAGACCACCTTTACAAGGCCAACGCATTGATCATCATCCTCTCACTTTTCAGGTGACCTCCACAAATAGTTAGAGTGATATTGATAATTTTTCAATGATCAAACTAATTGATATTCATCTTGTTACAATCAGCCTCAGGTTGGCTTCTCTTATGATACTCGAAAGGGTGCATCGATATCGTCTACATCGTCGTCATCGTCTTCAATGCCAAATGAACCTCCCTCTCCAAATTTTGTTGTCAAACGTATGTTTTACTGTTCTATTACTAATTCAAGTTGTTCTTAATATAATCCATCCAAGATTAAATTTTTATTCATGAATCTTAAAGAAAATATTTGAGTTCATTGTTAAATTTCAAAAACAAAAATAAGATTTTAAATAGACTAGGATGAATAAAAAAAGAATAAAAAAATATATTTCAATTTTTATTGTATCTCAAAAATACCCATAAACTTTTAAAAATACTAGTTTTAAATTAAAACAATTAATACTTTCTTTAAATTTTTAATGTGTTTCAAAAACACCCTAGAAGTTTCAAACAAATCAAGTAATTAGATAACCATCTTTCGATTTTTTAAAAATTCAAAAATACATTCACCGTTAGTACAACGTTTAAAAAATATTCATAAACTTTTCAAAAATCCTTAAAACGTTTATAGATAATTTAAAAGATGTCGATAGACGATTTTCATTAATATATTAACCGTAAGAATATTTTAAATTTTTTATAATAAAGATAAAGTTGGTTAATGTTATTTTTATTATTTTGTAAACATATTACTATCCTTAAATTTAAATTTATTTTTGAACTCTTTAAAAAACTTGAAAGGTATATGTGAGTTTTAAAAGCTCAGGAGTATTTAAACTATTAAAATACTATCGATTTCCATTCAAAATGAATGACGGACATTTTTCTTTTTTTTTTTGAAAGTTTAAGGATATTATTGAAAAGTTTAACCGTATTTTTTGAAACAAAGAAGTAATTAAAACATCGAAAGTGTTCTTATTTTATTTTTATTTTATTTTATTTTTTTGCAGCTCCGGAGAAGAAACACAGACTCCCATCAGCTTACAATTGTTTCATGAAGTAAGAACAGTTCATTGATTAAGCAGAAAAGGAATAAAAAAAAAAAAAAAAAAAAAAAATTGTTAGTAGTCTTCTTGACAATATATTGTTGTGTTAGGGAGGAGATTCAACGCATCAAAGCTGCCAACCCAGAAATCCCACATCGAGAAGCATTCAGTGCCGCAGCAAAAAACGTAATTTATTATTATTTTTTCTAATCATTTATTTTCTTAATTCCTTCGAAATAAGTTAACGTTGTCACAACAGTGGGCAAGGTACATTCCAAATTCCGCAGCTGGGTCGGTTTCTGGGACTCCCAACGACGTAAGAAAAAGGGTATTATTGTACTTTTACATAAATAAAGCAACTATTTTTGTAGTTCATATTTAAGGTTCTTAGGGTTTTCAAACTTGCAGGAATGATACGGTTTAGAGCACTGGAAGAATCGGACATATCAAATGGCTGTCTGCTCTAG

mRNA sequence

ATGAGCAGCTCCCAAGACAAATCCTCCATGGATTTGGTTCAACCAAATGACCATCTTTGTTATGTCAAATGCAACTTTTGCAACACTCTTCTCGCGGTTGGGATACCATGCAGACGTTTGTTGGAGACAGTGACAGTGAAATGTGGTAATTGTAGTAATCTGTCGTTTTTGAGCACAAGACCACCTTTACAAGGCCAACGCATTGATCATCATCCTCTCACTTTTCAGCCTCAGGTTGGCTTCTCTTATGATACTCGAAAGGGTGCATCGATATCGTCTACATCGTCGTCATCGTCTTCAATGCCAAATGAACCTCCCTCTCCAAATTTTGTTGTCAAACCTCCGGAGAAGAAACACAGACTCCCATCAGCTTACAATTGTTTCATGAAGGAGGAGATTCAACGCATCAAAGCTGCCAACCCAGAAATCCCACATCGAGAAGCATTCAGTGCCGCAGCAAAAAACTGGGCAAGGTACATTCCAAATTCCGCAGCTGGGTCGGTTTCTGGGACTCCCAACGACGTTCTTAGGGTTTTCAAACTTGCAGGAATGATACGGTTTAGAGCACTGGAAGAATCGGACATATCAAATGGCTGTCTGCTCTAG

Coding sequence (CDS)

ATGAGCAGCTCCCAAGACAAATCCTCCATGGATTTGGTTCAACCAAATGACCATCTTTGTTATGTCAAATGCAACTTTTGCAACACTCTTCTCGCGGTTGGGATACCATGCAGACGTTTGTTGGAGACAGTGACAGTGAAATGTGGTAATTGTAGTAATCTGTCGTTTTTGAGCACAAGACCACCTTTACAAGGCCAACGCATTGATCATCATCCTCTCACTTTTCAGCCTCAGGTTGGCTTCTCTTATGATACTCGAAAGGGTGCATCGATATCGTCTACATCGTCGTCATCGTCTTCAATGCCAAATGAACCTCCCTCTCCAAATTTTGTTGTCAAACCTCCGGAGAAGAAACACAGACTCCCATCAGCTTACAATTGTTTCATGAAGGAGGAGATTCAACGCATCAAAGCTGCCAACCCAGAAATCCCACATCGAGAAGCATTCAGTGCCGCAGCAAAAAACTGGGCAAGGTACATTCCAAATTCCGCAGCTGGGTCGGTTTCTGGGACTCCCAACGACGTTCTTAGGGTTTTCAAACTTGCAGGAATGATACGGTTTAGAGCACTGGAAGAATCGGACATATCAAATGGCTGTCTGCTCTAG

Homology

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BLAST of CmoCh04G017950.1 vs. Swiss-Prot
Match: CRC_ARATH (Protein CRABS CLAW OS=Arabidopsis thaliana GN=CRC PE=1 SV=2)

HSP 1 Score: 201.4 bits (511), Expect = 9.1e-51
Identity = 105/157 (66.88%), Postives = 122/157 (77.71%), Query Frame = 1


Query: 17  DHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNLSFLSTRPPLQGQRIDHHPLTFQ 76
           +HL YV+C+ CNT+LAVGIP +R+L+TVTVKCG+C NLSFL+T PPLQG    H  LT Q
Sbjct: 19  EHLYYVRCSICNTILAVGIPLKRMLDTVTVKCGHCGNLSFLTTTPPLQG----HVSLTLQ 78

Query: 77  PQVGFSYDTRKGASISSTSSSSSSMPNEPPSPNFVVKPPEKKHRLPSAYNCFMKEEIQRI 136
            Q     D +KG+S SS+SS+SS  P  P SP FVVKPPEKK RLPSAYN FM++EIQRI
Sbjct: 79  MQSFGGSDYKKGSSSSSSSSTSSDQPPSP-SPPFVVKPPEKKQRLPSAYNRFMRDEIQRI 138

Query: 137 KAANPEIPHREAFSAAAKNWARYIPNSAAGSVSGTPN 174
           K+ANPEIPHREAFSAAAKNWA+YIPNS     SG  N
Sbjct: 139 KSANPEIPHREAFSAAAKNWAKYIPNSPTSITSGGHN 170

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BLAST of CmoCh04G017950.1 vs. Swiss-Prot
Match: YABDL_ORYSJ (Protein DROOPING LEAF OS=Oryza sativa subsp. japonica GN=DL PE=1 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 2.6e-45
Identity = 98/170 (57.65%), Postives = 121/170 (71.18%), Query Frame = 1


Query: 10  MDLVQPNDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNLSFLSTRPPL-QGQRI 69
           MDLV P++HLCYV+C +CNT+LAVG+PC+RL++TVTVKCG+C+NLSFLS RPP+ Q    
Sbjct: 1   MDLVSPSEHLCYVRCTYCNTVLAVGVPCKRLMDTVTVKCGHCNNLSFLSPRPPMVQPLSP 60

Query: 70  DHHPLTFQPQVGFSYDTRKGASISSTSSSSSSMPNEPPSPNFVVKPPEKKHRLPSAYNCF 129
             HPL   P  G   D R+   +   S +S+     P +P FVVKPPEKKHRLPSAYN F
Sbjct: 61  TDHPL--GPFQGPCTDCRRNQPLPLVSPTSNE--GSPRAP-FVVKPPEKKHRLPSAYNRF 120

Query: 130 MKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSAAGSVSGTPNDVLRV 179
           M+EEIQRIKAA P+IPHREAFS AAKNWA+  P  ++   +   N   RV
Sbjct: 121 MREEIQRIKAAKPDIPHREAFSMAAKNWAKCDPRCSSTVSTSNSNPEPRV 165

[Close]

BLAST of CmoCh04G017950.1 vs. Swiss-Prot
Match: YAB3_ARATH (Axial regulator YABBY 3 OS=Arabidopsis thaliana GN=YAB3 PE=1 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 5.7e-29
Identity = 83/195 (42.56%), Postives = 99/195 (50.77%), Query Frame = 1


Query: 2   SSSQDKSSMDLVQPNDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNL------- 61
           SSS      D     D LCYV C+FC+T+LAV +P   L +TVTV+CG+CSNL       
Sbjct: 8   SSSAPAFPPDHFSSTDQLCYVHCSFCDTVLAVSVPPSSLFKTVTVRCGHCSNLLSVTVSM 67

Query: 62  -------------SFLSTRPPLQ-----------GQRID------HHPLTFQPQVGFSYD 121
                        SFL   PP             GQ I+      HH     P       
Sbjct: 68  RALLLPSVSNLGHSFLPPPPPPPPPNLLEEMRSGGQNINMNMMMSHHASAHHPNEHLVMA 127

Query: 122 TRKGASISSTSSSSSSMPNEPPSPNFVVKPPEKKHRLPSAYNCFMKEEIQRIKAANPEIP 160
           TR G S+         MP  PP+     +PPEK+ R+PSAYN F+KEEIQRIKA NP+I 
Sbjct: 128 TRNGRSVDHLQE----MPRPPPAN----RPPEKRQRVPSAYNRFIKEEIQRIKAGNPDIS 187

[Close]

BLAST of CmoCh04G017950.1 vs. Swiss-Prot
Match: YAB4_ORYSJ (Protein YABBY 4 OS=Oryza sativa subsp. japonica GN=YAB4 PE=2 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 2.8e-28
Identity = 82/205 (40.00%), Postives = 108/205 (52.68%), Query Frame = 1


Query: 1   MSSSQDKSS------MDLVQPNDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNL 60
           MSSS   S+      +    P + LCYV CN C+T+LAVG+PC  L +TVTV+CG+C+NL
Sbjct: 1   MSSSSSSSAVFPLDHLAAPSPTEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANL 60

Query: 61  SFLSTR-------PPLQGQRIDHHPLTFQP--------QVGFS-----YDTRKGASISST 120
             ++ R        P    ++   P    P        +V F       +    AS+SS 
Sbjct: 61  LSVNLRGLLLPAPAPAPANQLHFGPSLLSPTSPHGLLDEVAFQTPSLLMEQAASASLSSI 120

Query: 121 SSSSSS----------MPNEPP----------SPNFVVKPPEKKHRLPSAYNCFMKEEIQ 160
           +  SSS          MP   P          +P    +PPEK+ R+PSAYN F+K+EIQ
Sbjct: 121 TGRSSSSCASNAPAMQMPPAKPVQQEPELPKNAPASANRPPEKRQRVPSAYNRFIKDEIQ 180

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BLAST of CmoCh04G017950.1 vs. Swiss-Prot
Match: YAB4_ORYSI (Protein YABBY 4 OS=Oryza sativa subsp. indica GN=YAB4 PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 2.8e-28
Identity = 82/205 (40.00%), Postives = 108/205 (52.68%), Query Frame = 1


Query: 1   MSSSQDKSS------MDLVQPNDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNL 60
           MSSS   S+      +    P + LCYV CN C+T+LAVG+PC  L +TVTV+CG+C+NL
Sbjct: 1   MSSSSSSSAVFPLDHLAAPSPTEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANL 60

Query: 61  SFLSTR-------PPLQGQRIDHHPLTFQP--------QVGFS-----YDTRKGASISST 120
             ++ R        P    ++   P    P        +V F       +    AS+SS 
Sbjct: 61  LSVNLRGLLLPAPAPAPANQLHFGPSLLSPTSPHGLLDEVAFQTPSLLMEQAASASLSSI 120

Query: 121 SSSSSS----------MPNEPP----------SPNFVVKPPEKKHRLPSAYNCFMKEEIQ 160
           +  SSS          MP   P          +P    +PPEK+ R+PSAYN F+K+EIQ
Sbjct: 121 TGRSSSSCASNAPAMQMPPAKPVQQEPELPKNAPASANRPPEKRQRVPSAYNRFIKDEIQ 180

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BLAST of CmoCh04G017950.1 vs. TrEMBL
Match: A0A0A0KQW3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G606780 PE=4 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 1.2e-70
Identity = 146/177 (82.49%), Postives = 159/177 (89.83%), Query Frame = 1


Query: 1   MSSSQDKSSM-DLVQPNDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNLSFLST 60
           MS+S+DKSSM DLVQP++H CYVKCNFCNT+LAVGIPCR  L+TVTVKCG+CSNLSFLST
Sbjct: 1   MSNSEDKSSMADLVQPSEHFCYVKCNFCNTVLAVGIPCRHWLDTVTVKCGHCSNLSFLST 60

Query: 61  RPPLQGQRIDHHPLTFQPQVGFSYDT--RKGASISSTSSSSSSMPNEPPSPNFVVKPPEK 120
           RPPLQGQ IDH PLTFQ QVGFS +   RKGAS SSTS++SS + N+  SPNFVVKPPEK
Sbjct: 61  RPPLQGQCIDH-PLTFQSQVGFSNNDHIRKGASTSSTSTASS-ITND--SPNFVVKPPEK 120

Query: 121 KHRLPSAYNCFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSAAGSVSGTPND 175
           KHRLPSAYN FMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSAAGSVSGT N+
Sbjct: 121 KHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSAAGSVSGTHNN 173

[Close]

BLAST of CmoCh04G017950.1 vs. TrEMBL
Match: A0A067KYR0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15738 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 8.5e-64
Identity = 132/178 (74.16%), Postives = 149/178 (83.71%), Query Frame = 1


Query: 5   QDKSSMDLVQPNDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNLSFLSTRPPLQ 64
           ++K +MDLV P++HLCYV+CNFCNT+LAVGIPC+RLL+TVTVKCG+CSNLSFLSTRPPLQ
Sbjct: 4   EEKVTMDLVPPSEHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLSTRPPLQ 63

Query: 65  GQRIDHHPLTFQPQV--------GFSYDTRKGASISSTSSSSSSMPNEPPSPNFVVKPPE 124
           GQ +DH PLT Q  +        GF  D RKG S SS+SSS+SS P  P +P FVVKPPE
Sbjct: 64  GQCLDH-PLTLQVLIYVCTKKKQGFFSDLRKGQS-SSSSSSTSSEPLSPKAP-FVVKPPE 123

Query: 125 KKHRLPSAYNCFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSAAGSVSGTPND 175
           KKHRLPSAYN FMKEEIQRIKAANPEIPHREAFS AAKNWARYIPNSA GSVSG+ N+
Sbjct: 124 KKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSTAAKNWARYIPNSAGGSVSGSNNN 178

[Close]

BLAST of CmoCh04G017950.1 vs. TrEMBL
Match: B9REB6_RICCO (Protein CRABS CLAW, putative OS=Ricinus communis GN=RCOM_1620070 PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 6.1e-62
Identity = 128/167 (76.65%), Postives = 144/167 (86.23%), Query Frame = 1


Query: 5   QDKSSMDLVQPNDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNLSFLSTRPPLQ 64
           ++K +MDLV P++HLCYV+CNFCNT+LAVGIPC+RLL+TVTVKCG+CSNLSFLSTRPPLQ
Sbjct: 4   EEKVTMDLVPPSEHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLSTRPPLQ 63

Query: 65  GQRIDHHPLTFQPQVGFSYDTRKGASISSTSSSSSSMPNEPPSPNFVVKPPEKKHRLPSA 124
           GQ +DH  LT Q    F  D +KG S SS+SSS+SS P  P +P FVVKPPEKKHRLPSA
Sbjct: 64  GQCLDHQ-LTLQ---SFFSDLKKGQS-SSSSSSTSSEPLSPKAP-FVVKPPEKKHRLPSA 123

Query: 125 YNCFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSAAGSVSGT 172
           YN FMKEEIQRIKAANPEIPHREAFS AAKNWARYIPNS AGSVSG+
Sbjct: 124 YNRFMKEEIQRIKAANPEIPHREAFSTAAKNWARYIPNSTAGSVSGS 164

[Close]

BLAST of CmoCh04G017950.1 vs. TrEMBL
Match: D7T9Z4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g00140 PE=4 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 2.0e-60
Identity = 126/165 (76.36%), Postives = 141/165 (85.45%), Query Frame = 1


Query: 10  MDLVQPNDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNLSFLSTRPPLQGQRID 69
           MDLV P++HLCYV+CNFCNT+LAVGIPC+RLL+TVTVKCG+CSNLSFLSTRPPLQGQ +D
Sbjct: 1   MDLVPPSEHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLSTRPPLQGQCLD 60

Query: 70  HHPLTFQPQVGFSYDTRKGASISSTSSSSSSMPNEPPSPNFVVKPPEKKHRLPSAYNCFM 129
           H  ++ Q   G   D RKG S SS+SSS+SS P  P +P FVVKPPEKKHRLPSAYN FM
Sbjct: 61  HQ-MSLQ---GVCNDFRKGQS-SSSSSSTSSEPVSPKAP-FVVKPPEKKHRLPSAYNRFM 120

Query: 130 KEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSAAGSVSGTPND 175
           KEEIQRIK ANPEIPHREAFSAAAKNWARYIPNS AGSVS + N+
Sbjct: 121 KEEIQRIKVANPEIPHREAFSAAAKNWARYIPNSPAGSVSESSNN 159

[Close]

BLAST of CmoCh04G017950.1 vs. TrEMBL
Match: A0A0D2NCW1_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G146700 PE=4 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 2.6e-60
Identity = 126/171 (73.68%), Postives = 140/171 (81.87%), Query Frame = 1


Query: 5   QDKSSMDLVQPNDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNLSFLSTRPPLQ 64
           +DK  MDLV  ++HLCYV+CNFCNT+LAVGIPC+RLLETVTVKCG+CSNLSFLSTRPPLQ
Sbjct: 4   EDKVGMDLVPQSEHLCYVRCNFCNTVLAVGIPCKRLLETVTVKCGHCSNLSFLSTRPPLQ 63

Query: 65  GQRIDHHPLTFQPQVGFSYDTRKGASISSTSSSSSSMPNEPPSPNFVVKPPEKKHRLPSA 124
           GQ +D  P T      F  D RKG    S SSS+SS P+ P +P FVVKPPEKKHRLPSA
Sbjct: 64  GQCLD--PQTSLTLQSFCGDFRKGTQFPSPSSSTSSEPSSPKAP-FVVKPPEKKHRLPSA 123

Query: 125 YNCFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNS-AAGSVSGTPND 175
           YN FMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNS AA SV G+ ++
Sbjct: 124 YNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSPAASSVCGSSSN 171

[Close]

BLAST of CmoCh04G017950.1 vs. TAIR10
Match: AT1G69180.1 (AT1G69180.1 Plant-specific transcription factor YABBY family protein)

HSP 1 Score: 201.4 bits (511), Expect = 5.1e-52
Identity = 105/157 (66.88%), Postives = 122/157 (77.71%), Query Frame = 1


Query: 17  DHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNLSFLSTRPPLQGQRIDHHPLTFQ 76
           +HL YV+C+ CNT+LAVGIP +R+L+TVTVKCG+C NLSFL+T PPLQG    H  LT Q
Sbjct: 19  EHLYYVRCSICNTILAVGIPLKRMLDTVTVKCGHCGNLSFLTTTPPLQG----HVSLTLQ 78

Query: 77  PQVGFSYDTRKGASISSTSSSSSSMPNEPPSPNFVVKPPEKKHRLPSAYNCFMKEEIQRI 136
            Q     D +KG+S SS+SS+SS  P  P SP FVVKPPEKK RLPSAYN FM++EIQRI
Sbjct: 79  MQSFGGSDYKKGSSSSSSSSTSSDQPPSP-SPPFVVKPPEKKQRLPSAYNRFMRDEIQRI 138

Query: 137 KAANPEIPHREAFSAAAKNWARYIPNSAAGSVSGTPN 174
           K+ANPEIPHREAFSAAAKNWA+YIPNS     SG  N
Sbjct: 139 KSANPEIPHREAFSAAAKNWAKYIPNSPTSITSGGHN 170

[Close]

BLAST of CmoCh04G017950.1 vs. TAIR10
Match: AT4G00180.1 (AT4G00180.1 Plant-specific transcription factor YABBY family protein)

HSP 1 Score: 129.0 bits (323), Expect = 3.2e-30
Identity = 83/195 (42.56%), Postives = 99/195 (50.77%), Query Frame = 1


Query: 2   SSSQDKSSMDLVQPNDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNL------- 61
           SSS      D     D LCYV C+FC+T+LAV +P   L +TVTV+CG+CSNL       
Sbjct: 8   SSSAPAFPPDHFSSTDQLCYVHCSFCDTVLAVSVPPSSLFKTVTVRCGHCSNLLSVTVSM 67

Query: 62  -------------SFLSTRPPLQ-----------GQRID------HHPLTFQPQVGFSYD 121
                        SFL   PP             GQ I+      HH     P       
Sbjct: 68  RALLLPSVSNLGHSFLPPPPPPPPPNLLEEMRSGGQNINMNMMMSHHASAHHPNEHLVMA 127

Query: 122 TRKGASISSTSSSSSSMPNEPPSPNFVVKPPEKKHRLPSAYNCFMKEEIQRIKAANPEIP 160
           TR G S+         MP  PP+     +PPEK+ R+PSAYN F+KEEIQRIKA NP+I 
Sbjct: 128 TRNGRSVDHLQE----MPRPPPAN----RPPEKRQRVPSAYNRFIKEEIQRIKAGNPDIS 187

[Close]

BLAST of CmoCh04G017950.1 vs. TAIR10
Match: AT2G45190.1 (AT2G45190.1 Plant-specific transcription factor YABBY family protein)

HSP 1 Score: 126.3 bits (316), Expect = 2.1e-29
Identity = 79/179 (44.13%), Postives = 101/179 (56.42%), Query Frame = 1


Query: 2   SSSQDKSSMDLVQPNDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNLSFLSTRP 61
           S S    S D   P+DHLCYV+CNFC T+LAV +P   L +TVTV+CG C+NL  ++ R 
Sbjct: 8   SPSSAVCSPDHFSPSDHLCYVQCNFCQTILAVNVPYTSLFKTVTVRCGCCTNLLSVNMRS 67

Query: 62  ---PLQGQRIDHHPLTFQPQVGFSYDTRKGASISSTSSSSSSMPNEPPS----PNF---- 121
              P   Q      L   P   F+          + S+ +  M N+ P+    P+F    
Sbjct: 68  YVLPASNQL----QLQLGPHSYFNPQDILEELRDAPSNMNMMMMNQHPTMNDIPSFMDLH 127

Query: 122 ----------VVKPPEKKHRLPSAYNCFMKEEIQRIKAANPEIPHREAFSAAAKNWARY 160
                     V +PPEK+ R+PSAYN F+KEEIQRIKA NP+I HREAFSAAAKNWA +
Sbjct: 128 QQHEIPKAPPVNRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHF 182

[Close]

BLAST of CmoCh04G017950.1 vs. TAIR10
Match: AT2G26580.1 (AT2G26580.1 plant-specific transcription factor YABBY family protein)

HSP 1 Score: 125.9 bits (315), Expect = 2.7e-29
Identity = 66/147 (44.90%), Postives = 87/147 (59.18%), Query Frame = 1


Query: 13  VQPNDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNLSFLSTRPPLQGQRIDHHP 72
           V   + LCY+ CNFCN +LAV +PC  L + VTV+CG+C+NL  ++    LQ     +  
Sbjct: 5   VMATEQLCYIPCNFCNIILAVNVPCSSLFDIVTVRCGHCTNLWSVNMAAALQSLSRPNFQ 64

Query: 73  LTFQPQVGFSYDTRKGASISSTSSSSSSMPNEPPSPNFVVKPPEKKHRLPSAYNCFMKEE 132
            T      +   +R    I S  S+ +           V +PPEK+ R+PSAYN F+KEE
Sbjct: 65  ATNYAVPEYGSSSRSHTKIPSRISTRTITEQR-----IVNRPPEKRQRVPSAYNQFIKEE 124

Query: 133 IQRIKAANPEIPHREAFSAAAKNWARY 160
           IQRIKA NP+I HREAFS AAKNWA +
Sbjct: 125 IQRIKANNPDISHREAFSTAAKNWAHF 146

[Close]

BLAST of CmoCh04G017950.1 vs. TAIR10
Match: AT1G08465.1 (AT1G08465.1 Plant-specific transcription factor YABBY family protein)

HSP 1 Score: 124.0 bits (310), Expect = 1.0e-28
Identity = 71/153 (46.41%), Postives = 95/153 (62.09%), Query Frame = 1


Query: 16  NDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNLSFLS--------TRPPLQGQR 75
           ++ +CYV C+FC T+LAV +P   L   VTV+CG+C+NL  L+        + PP+    
Sbjct: 7   SERVCYVHCSFCTTILAVSVPYASLFTLVTVRCGHCTNLLSLNIGVSLHQTSAPPI---- 66

Query: 76  IDHHPLTFQPQVGFSYDTRKGASISSTSSSSSSMPNEPPSPNFV-VKPPEKKHRLPSAYN 135
             H  L    Q   S  TRK  + SS S+++ S   +  +P    ++PPEK+ R+PSAYN
Sbjct: 67  --HQDLQPHRQHTTSLVTRKDCASSSRSTNNLSENIDREAPRMPPIRPPEKRQRVPSAYN 126

Query: 136 CFMKEEIQRIKAANPEIPHREAFSAAAKNWARY 160
            F+KEEIQRIKA NPEI HREAFS AAKNWA +
Sbjct: 127 RFIKEEIQRIKACNPEISHREAFSTAAKNWAHF 153

[Close]

BLAST of CmoCh04G017950.1 vs. NCBI nr
Match: gi|659091256|ref|XP_008446454.1| (PREDICTED: protein CRABS CLAW [Cucumis melo])

HSP 1 Score: 274.2 bits (700), Expect = 1.8e-70
Identity = 146/177 (82.49%), Postives = 159/177 (89.83%), Query Frame = 1


Query: 1   MSSSQDKSSM-DLVQPNDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNLSFLST 60
           MS+S+DKSSM DLVQP++H CYVKCNFCNT+LAVGIPCR  L+TVTVKCG+CSNLSFLST
Sbjct: 1   MSNSEDKSSMADLVQPSEHFCYVKCNFCNTVLAVGIPCRHWLDTVTVKCGHCSNLSFLST 60

Query: 61  RPPLQGQRIDHHPLTFQPQVGFSYDT--RKGASISSTSSSSSSMPNEPPSPNFVVKPPEK 120
           RPPLQGQ IDH PLTFQ QVGFS +   RKGAS SSTS++SS + N+  SPNFVVKPPEK
Sbjct: 61  RPPLQGQCIDH-PLTFQSQVGFSNNDHIRKGASTSSTSTASS-ITND--SPNFVVKPPEK 120

Query: 121 KHRLPSAYNCFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSAAGSVSGTPND 175
           KHRLPSAYN FMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSAAGSVSGT N+
Sbjct: 121 KHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSAAGSVSGTHNN 173

[Close]

BLAST of CmoCh04G017950.1 vs. NCBI nr
Match: gi|802568623|ref|XP_012067815.1| (PREDICTED: protein CRABS CLAW isoform X1 [Jatropha curcas])

HSP 1 Score: 255.8 bits (652), Expect = 6.5e-65
Identity = 133/170 (78.24%), Postives = 149/170 (87.65%), Query Frame = 1


Query: 5   QDKSSMDLVQPNDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNLSFLSTRPPLQ 64
           ++K +MDLV P++HLCYV+CNFCNT+LAVGIPC+RLL+TVTVKCG+CSNLSFLSTRPPLQ
Sbjct: 4   EEKVTMDLVPPSEHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLSTRPPLQ 63

Query: 65  GQRIDHHPLTFQPQVGFSYDTRKGASISSTSSSSSSMPNEPPSPNFVVKPPEKKHRLPSA 124
           GQ +DH PLT Q Q GF  D RKG S SS+SSS+SS P  P +P FVVKPPEKKHRLPSA
Sbjct: 64  GQCLDH-PLTLQKQ-GFFSDLRKGQS-SSSSSSTSSEPLSPKAP-FVVKPPEKKHRLPSA 123

Query: 125 YNCFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSAAGSVSGTPND 175
           YN FMKEEIQRIKAANPEIPHREAFS AAKNWARYIPNSA GSVSG+ N+
Sbjct: 124 YNRFMKEEIQRIKAANPEIPHREAFSTAAKNWARYIPNSAGGSVSGSNNN 169

[Close]

BLAST of CmoCh04G017950.1 vs. NCBI nr
Match: gi|802568654|ref|XP_012067816.1| (PREDICTED: protein CRABS CLAW isoform X2 [Jatropha curcas])

HSP 1 Score: 253.8 bits (647), Expect = 2.5e-64
Identity = 132/170 (77.65%), Postives = 148/170 (87.06%), Query Frame = 1


Query: 5   QDKSSMDLVQPNDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNLSFLSTRPPLQ 64
           ++K +MDLV P++HLCYV+CNFCNT+LAVGIPC+RLL+TVTVKCG+CSNLSFLSTRPPLQ
Sbjct: 4   EEKVTMDLVPPSEHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLSTRPPLQ 63

Query: 65  GQRIDHHPLTFQPQVGFSYDTRKGASISSTSSSSSSMPNEPPSPNFVVKPPEKKHRLPSA 124
           GQ +DH PLT Q   GF  D RKG S SS+SSS+SS P  P +P FVVKPPEKKHRLPSA
Sbjct: 64  GQCLDH-PLTLQ---GFFSDLRKGQS-SSSSSSTSSEPLSPKAP-FVVKPPEKKHRLPSA 123

Query: 125 YNCFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSAAGSVSGTPND 175
           YN FMKEEIQRIKAANPEIPHREAFS AAKNWARYIPNSA GSVSG+ N+
Sbjct: 124 YNRFMKEEIQRIKAANPEIPHREAFSTAAKNWARYIPNSAGGSVSGSNNN 167

[Close]

BLAST of CmoCh04G017950.1 vs. NCBI nr
Match: gi|643734661|gb|KDP41331.1| (hypothetical protein JCGZ_15738 [Jatropha curcas])

HSP 1 Score: 251.5 bits (641), Expect = 1.2e-63
Identity = 132/178 (74.16%), Postives = 149/178 (83.71%), Query Frame = 1


Query: 5   QDKSSMDLVQPNDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNLSFLSTRPPLQ 64
           ++K +MDLV P++HLCYV+CNFCNT+LAVGIPC+RLL+TVTVKCG+CSNLSFLSTRPPLQ
Sbjct: 4   EEKVTMDLVPPSEHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLSTRPPLQ 63

Query: 65  GQRIDHHPLTFQPQV--------GFSYDTRKGASISSTSSSSSSMPNEPPSPNFVVKPPE 124
           GQ +DH PLT Q  +        GF  D RKG S SS+SSS+SS P  P +P FVVKPPE
Sbjct: 64  GQCLDH-PLTLQVLIYVCTKKKQGFFSDLRKGQS-SSSSSSTSSEPLSPKAP-FVVKPPE 123

Query: 125 KKHRLPSAYNCFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSAAGSVSGTPND 175
           KKHRLPSAYN FMKEEIQRIKAANPEIPHREAFS AAKNWARYIPNSA GSVSG+ N+
Sbjct: 124 KKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSTAAKNWARYIPNSAGGSVSGSNNN 178

[Close]

BLAST of CmoCh04G017950.1 vs. NCBI nr
Match: gi|223549235|gb|EEF50724.1| (Protein CRABS CLAW, putative [Ricinus communis])

HSP 1 Score: 245.4 bits (625), Expect = 8.7e-62
Identity = 128/167 (76.65%), Postives = 144/167 (86.23%), Query Frame = 1


Query: 5   QDKSSMDLVQPNDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNLSFLSTRPPLQ 64
           ++K +MDLV P++HLCYV+CNFCNT+LAVGIPC+RLL+TVTVKCG+CSNLSFLSTRPPLQ
Sbjct: 4   EEKVTMDLVPPSEHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLSTRPPLQ 63

Query: 65  GQRIDHHPLTFQPQVGFSYDTRKGASISSTSSSSSSMPNEPPSPNFVVKPPEKKHRLPSA 124
           GQ +DH  LT Q    F  D +KG S SS+SSS+SS P  P +P FVVKPPEKKHRLPSA
Sbjct: 64  GQCLDHQ-LTLQ---SFFSDLKKGQS-SSSSSSTSSEPLSPKAP-FVVKPPEKKHRLPSA 123

Query: 125 YNCFMKEEIQRIKAANPEIPHREAFSAAAKNWARYIPNSAAGSVSGT 172
           YN FMKEEIQRIKAANPEIPHREAFS AAKNWARYIPNS AGSVSG+
Sbjct: 124 YNRFMKEEIQRIKAANPEIPHREAFSTAAKNWARYIPNSTAGSVSGS 164

The following BLAST results are available for this feature:

BLAST of CmoCh04G017950.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CRC_ARATH	9.1e-51	66.88	Protein CRABS CLAW OS=Arabidopsis thaliana GN=CRC PE=1 SV=2	[more]
YABDL_ORYSJ	2.6e-45	57.65	Protein DROOPING LEAF OS=Oryza sativa subsp. japonica GN=DL PE=1 SV=1	[more]
YAB3_ARATH	5.7e-29	42.56	Axial regulator YABBY 3 OS=Arabidopsis thaliana GN=YAB3 PE=1 SV=1	[more]
YAB4_ORYSJ	2.8e-28	40.00	Protein YABBY 4 OS=Oryza sativa subsp. japonica GN=YAB4 PE=2 SV=1	[more]
YAB4_ORYSI	2.8e-28	40.00	Protein YABBY 4 OS=Oryza sativa subsp. indica GN=YAB4 PE=3 SV=1	[more]

BLAST of CmoCh04G017950.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQW3_CUCSA	1.2e-70	82.49	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G606780 PE=4 SV=1	[more]
A0A067KYR0_JATCU	8.5e-64	74.16	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15738 PE=4 SV=1	[more]
B9REB6_RICCO	6.1e-62	76.65	Protein CRABS CLAW, putative OS=Ricinus communis GN=RCOM_1620070 PE=4 SV=1	[more]
D7T9Z4_VITVI	2.0e-60	76.36	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g00140 PE=4 SV=...	[more]
A0A0D2NCW1_GOSRA	2.6e-60	73.68	Uncharacterized protein OS=Gossypium raimondii GN=B456_005G146700 PE=4 SV=1	[more]

BLAST of CmoCh04G017950.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G69180.1	5.1e-52	66.88	Plant-specific transcription factor YABBY family protein	[more]
AT4G00180.1	3.2e-30	42.56	Plant-specific transcription factor YABBY family protein	[more]
AT2G45190.1	2.1e-29	44.13	Plant-specific transcription factor YABBY family protein	[more]
AT2G26580.1	2.7e-29	44.90	plant-specific transcription factor YABBY family protein	[more]
AT1G08465.1	1.0e-28	46.41	Plant-specific transcription factor YABBY family protein	[more]

BLAST of CmoCh04G017950.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659091256\|ref\|XP_008446454.1\|	1.8e-70	82.49	PREDICTED: protein CRABS CLAW [Cucumis melo]	[more]
gi\|802568623\|ref\|XP_012067815.1\|	6.5e-65	78.24	PREDICTED: protein CRABS CLAW isoform X1 [Jatropha curcas]	[more]
gi\|802568654\|ref\|XP_012067816.1\|	2.5e-64	77.65	PREDICTED: protein CRABS CLAW isoform X2 [Jatropha curcas]	[more]
gi\|643734661\|gb\|KDP41331.1\|	1.2e-63	74.16	hypothetical protein JCGZ_15738 [Jatropha curcas]	[more]
gi\|223549235\|gb\|EEF50724.1\|	8.7e-62	76.65	Protein CRABS CLAW, putative [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR006780	YABBY
IPR009071	HMG_box_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0007275	multicellular organism development

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007275	multicellular organism development
biological_process	GO:0031540	regulation of anthocyanin biosynthetic process
biological_process	GO:0048479	style development
biological_process	GO:0048443	stamen development
biological_process	GO:0010093	specification of floral organ identity
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0009909	regulation of flower development
biological_process	GO:0009860	pollen tube growth
biological_process	GO:0006333	chromatin assembly or disassembly
biological_process	GO:0009944	polarity specification of adaxial/abaxial axis
biological_process	GO:0009827	plant-type cell wall modification
biological_process	GO:0048481	plant ovule development
biological_process	GO:0048441	petal development
biological_process	GO:0010254	nectary development
biological_process	GO:0010582	floral meristem determinacy
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh04G017950	CmoCh04G017950	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh04G017950.1	CmoCh04G017950.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh04G017950.1.exon.1	CmoCh04G017950.1.exon.1	exon
CmoCh04G017950.1.exon.2	CmoCh04G017950.1.exon.2	exon
CmoCh04G017950.1.exon.3	CmoCh04G017950.1.exon.3	exon
CmoCh04G017950.1.exon.4	CmoCh04G017950.1.exon.4	exon
CmoCh04G017950.1.exon.5	CmoCh04G017950.1.exon.5	exon
CmoCh04G017950.1.exon.6	CmoCh04G017950.1.exon.6	exon
CmoCh04G017950.1.exon.7	CmoCh04G017950.1.exon.7	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh04G017950.1.CDS.1	CmoCh04G017950.1.CDS.1	CDS
CmoCh04G017950.1.CDS.2	CmoCh04G017950.1.CDS.2	CDS
CmoCh04G017950.1.CDS.3	CmoCh04G017950.1.CDS.3	CDS
CmoCh04G017950.1.CDS.4	CmoCh04G017950.1.CDS.4	CDS
CmoCh04G017950.1.CDS.5	CmoCh04G017950.1.CDS.5	CDS
CmoCh04G017950.1.CDS.6	CmoCh04G017950.1.CDS.6	CDS
CmoCh04G017950.1.CDS.7	CmoCh04G017950.1.CDS.7	CDS

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006780	YABBY protein	PANTHER	PTHR31675	FAMILY NOT NAMED	coord: 5..197 score: 4.9
IPR006780	YABBY protein	PFAM	PF04690	YABBY	coord: 15..159 score: 3.5
IPR009071	High mobility group box domain	GENE3D	G3DSA:1.10.30.10		coord: 113..158 score: 5.
IPR009071	High mobility group box domain	unknown	SSF47095	HMG-box	coord: 105..157 score: 1.8
None	No IPR available	PANTHER	PTHR31675:SF3	SUBFAMILY NOT NAMED	coord: 5..197 score: 4.9