Cp4.1LG01g15160 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g15160
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionProtein CRABS CLAW, putative
LocationCp4.1LG01 : 9051093 .. 9053781 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CACCCACAAAAGCAGCCCTTCCTCAACAGACCCACTTCTCATCTCTTCATTATGCTAAAACCCTTGCCTTAGCTCAACCAAACCTTCCTTCCTTGCCCACAATTCTCCTTCTCTCAAACATTAATGAGCAGCTCCCAAGACAAATCTTCCATGGATTTGGTTCAACCAAATGACCATCTTTGTTATGTCAAATGCAACTTTTGCAACACTCTTCTCGCGGTAACCTTCTCTCGTCTATACTCAATTTTACGATCCACTTTGAGTATACGTGTTCATGGCTTTTCTTTTCATGCTCGTGTCTTTTATTTATATACCCATGATTTTTTCTTTAATTAGCTAACATAGGACTCTAACAATCCTCTCCGAGCCTCTATGACTGAAGATCCGTGGTAAAACCCTATTGGATTACCAATGTGTTCTAGAGAAAAAGGGTTGTCTGGATAGTGCTAGACGGATAGATAACTCAATCGTAGTTTGCTCGAGGAGAGGATTGTTGGAGTCCATTAACGTGAGGACTTTTGGAGTATACGTGTTCATGGCTTTCCTTTTCATGATCGTGTCTTTTATTTATATACCCACGATTTTTCTTTTAATTAGCTAACATAGGACTCTAACAATCCTCTCCGAGCCTCTATGACTGAAGATCCGTGGTAAAACCCTATTGGATTACCAATATGTTCTAGAGAAAAGGGGTTGTCTAGATAGTGCTAGACGGATAGATAACTCAATTGTAGTCTGCTCGAGGAGAGGATTGTTGGAGTCCTTTTAACGTGAGGACTTTTGAAGAAACCAAAAGGAAAACCACGAACTAAGGCTAAATATGGTTGGATTTTGTTGGGTTTGGAAGGTTGGGATACCATGCAGACGTTTGTTGGAGACAGTGACAGTGAAATGTGGTAATTGTAGTAATCTGTCGTTTTTGAGCACAAGACCACCTTTACAAGGCCAATGCATTGATCATCATCCTCTCACTTTTCAGGTGACCTCCACAAATAGTTAAAGATTGATATTGATATTGAGTTATAAGAATTTTTCCAATGATCAAACTAATTGATATTCATCTTGTTGCAATCAGCCTCAGGTTGGCTTCTCTAATGATACTCAAAAGGGTGCATCGATATCGTCTACATCGTCGTCGTCTTCAATGCCAAATGAACCTCCCTCTCCAAATTTTGTTGTCAAACGTATGTTTTACTGTTCTATTACTAATTCAAGTTGTTCTTAATATAATCCATCCAAGATTAAATTTATTTTTCCTACATGAAAATACAAAATCAAATCATTATCAAACGATTTTCATTTTTTATCTTTAAATATTAGGGTTAATTTTTTCACAATTTCTTCACATGGGTATTCATGAATCTTAAAGAAAATATTTGAGTTTATTGTTAAATTCCAAGAAAAAAAAATTAAATAGACTAGAATAAAAAAAAAATACATTTCAATTTTATACTTATTTCAAAAGTATTCCTAAACTTTCAAAATTTTCAATAACAGACTTAAACTTTCAACAAAAAGTTTAAAAATACTCGTATTCAGTTAATATTCGGTTAGAAAATACCTTTTAACATTTAAAAATTGTTTAAAAAATACTCCTTTAACTTATAAACGTGTTTCAAAAACACCCTCGAATTTTCAAAAAATCAACTAATTATCTTTAAACATTTTTTAAAAAAAACTTCAAAAACATCTTTAAATTTTTAAAAAATTCAAAAATACATTTAAGGTAAATACAACATTTAAAAAATACTCATAAACTATCCAAAAGAACCTTAAAACGTTTATGGATAATCTAAGAGATGTCGATAGACGATTTTCATTAATATATTAGCACAAAGAATATTTCAAATTTTTTATAATAAATATAAAAATTAATGTTTTTTTTTATTATTTAAACATATCAAACTTATTTTTTTAGACTTTTTTAAAAGTTTAAGGATATTATTGAAAAGTTTAACGGCATTGAAGTATAAAGTTTAGAAGTATTTAAAAAATCGTGTTTTTATTTATTTATTTATTATTATTTTTTTTTCAGCTCCGGAGAAGAAACACAGACTCCCATCAGCTTACAATTGTTTCATGAAGTAAGAAGAGTTAATTGATTAAGCAGAAAAGGAATTAAAAATAAAAATAAAATTGTTAGCAGTCTTCTTGACAATATATTGTTGTGTTAGGGAGGAGATTCAACGCATCAAAGCTGCCAACCCAGAAATCCCACATCGAGAAGCATTCAGTGCCGCAGCAAAAAACGTAATTTAATTATTATTTTTTTTTTTATCATTTATTTTCTTAATTCCTTCGAAATAAATTAACGTTGTCACAACAGTGGGCAAGGTACATTCCAAATTCCGCAGCTGGGTCGGTTTCTGGGACTCCCAACGACGTAAGAAAAAGGGTATTATTGTATTTTTACATAAATAAAGCAACTATTTTTGTAGTTCATATTTAAGGTTCTTAGGGTTTTCAAACTTGCAGGAATGATACGGTTTAGAGCACTGGAAGAATCGGACATATCAAATGGCTGTCTGCTCTAGGGTTTGATCATCTTAAGATTCGCCATCTCTGTGTCTCCATGTCTTTATTTATTTATTTTTCTCGCATTTCATGTTTTTCTTTATGCTACTTTTCATTTTCTGTTGCCTGTGGATTAAAACCTATATTATTTTCTAATATAAGGTAATTTATATAT

mRNA sequence

CACCCACAAAAGCAGCCCTTCCTCAACAGACCCACTTCTCATCTCTTCATTATGCTAAAACCCTTGCCTTAGCTCAACCAAACCTTCCTTCCTTGCCCACAATTCTCCTTCTCTCAAACATTAATGAGCAGCTCCCAAGACAAATCTTCCATGGATTTGGTTCAACCAAATGACCATCTTTGTTATGTCAAATGCAACTTTTGCAACACTCTTCTCGCGGTTGGGATACCATGCAGACGTTTGTTGGAGACAGTGACAGTGAAATGTGGTAATTGTAGTAATCTGTCGTTTTTGAGCACAAGACCACCTTTACAAGGCCAATGCATTGATCATCATCCTCTCACTTTTCAGCCTCAGGTTGGCTTCTCTAATGATACTCAAAAGGGTGCATCGATATCGTCTACATCGTCGTCGTCTTCAATGCCAAATGAACCTCCCTCTCCAAATTTTGTTGTCAAACGAGATTCAACGCATCAAAGCTGCCAACCCAGAAATCCCACATCGAGAAGCATTCAGTGCCGCAGCAAAAAACTGGGCAAGGTACATTCCAAATTCCGCAGCTGGGTCGGTTTCTGGGACTCCCAACGACGAATGATACGGTTTAGAGCACTGGAAGAATCGGACATATCAAATGGCTGTCTGCTCTAGGGTTTGATCATCTTAAGATTCGCCATCTCTGTGTCTCCATGTCTTTATTTATTTATTTTTCTCGCATTTCATGTTTTTCTTTATGCTACTTTTCATTTTCTGTTGCCTGTGGATTAAAACCTATATTATTTTCTAATATAAGGTAATTTATATAT

Coding sequence (CDS)

ATGAGCAGCTCCCAAGACAAATCTTCCATGGATTTGGTTCAACCAAATGACCATCTTTGTTATGTCAAATGCAACTTTTGCAACACTCTTCTCGCGGTTGGGATACCATGCAGACGTTTGTTGGAGACAGTGACAGTGAAATGTGGTAATTGTAGTAATCTGTCGTTTTTGAGCACAAGACCACCTTTACAAGGCCAATGCATTGATCATCATCCTCTCACTTTTCAGCCTCAGGTTGGCTTCTCTAATGATACTCAAAAGGGTGCATCGATATCGTCTACATCGTCGTCGTCTTCAATGCCAAATGAACCTCCCTCTCCAAATTTTGTTGTCAAACGAGATTCAACGCATCAAAGCTGCCAACCCAGAAATCCCACATCGAGAAGCATTCAGTGCCGCAGCAAAAAACTGGGCAAGGTACATTCCAAATTCCGCAGCTGGGTCGGTTTCTGGGACTCCCAACGACGAATGATACGGTTTAGAGCACTGGAAGAATCGGACATATCAAATGGCTGTCTGCTCTAG

Protein sequence

MSSSQDKSSMDLVQPNDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNLSFLSTRPPLQGQCIDHHPLTFQPQVGFSNDTQKGASISSTSSSSSMPNEPPSPNFVVKRDSTHQSCQPRNPTSRSIQCRSKKLGKVHSKFRSWVGFWDSQRRMIRFRALEESDISNGCLL
Homology
[Close]
BLAST of Cp4.1LG01g15160 vs. Swiss-Prot
Match: CRC_ARATH (Protein CRABS CLAW OS=Arabidopsis thaliana GN=CRC PE=1 SV=2)

HSP 1 Score: 107.8 bits (268), Expect = 1.2e-22
Identity = 57/96 (59.38%), Postives = 71/96 (73.96%), Query Frame = 1 

Query: 17  DHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNLSFLSTRPPLQGQCIDHHPLTFQ 76
           +HL YV+C+ CNT+LAVGIP +R+L+TVTVKCG+C NLSFL+T PPLQG    H  LT Q
Sbjct: 19  EHLYYVRCSICNTILAVGIPLKRMLDTVTVKCGHCGNLSFLTTTPPLQG----HVSLTLQ 78

Query: 77  PQVGFSNDTQKGASISSTSSSSSMPNEPPSPNFVVK 113
            Q    +D +KG+S SS+SS+SS     PSP FVVK
Sbjct: 79  MQSFGGSDYKKGSSSSSSSSTSSDQPPSPSPPFVVK 110

[Close]
BLAST of Cp4.1LG01g15160 vs. Swiss-Prot
Match: YABDL_ORYSJ (Protein DROOPING LEAF OS=Oryza sativa subsp. japonica GN=DL PE=1 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.4e-20
Identity = 55/105 (52.38%), Postives = 69/105 (65.71%), Query Frame = 1 

Query: 10  MDLVQPNDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNLSFLSTRPPL-QGQCI 69
           MDLV P++HLCYV+C +CNT+LAVG+PC+RL++TVTVKCG+C+NLSFLS RPP+ Q    
Sbjct: 1   MDLVSPSEHLCYVRCTYCNTVLAVGVPCKRLMDTVTVKCGHCNNLSFLSPRPPMVQPLSP 60

Query: 70  DHHPL-TFQPQVGFSNDTQKGASISSTSSSSSMPNEPPSPNFVVK 113
             HPL  FQ         Q    +S TS+  S     P   FVVK
Sbjct: 61  TDHPLGPFQGPCTDCRRNQPLPLVSPTSNEGS-----PRAPFVVK 100

[Close]
BLAST of Cp4.1LG01g15160 vs. Swiss-Prot
Match: YAB4_ORYSJ (Protein YABBY 4 OS=Oryza sativa subsp. japonica GN=YAB4 PE=2 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.3e-10
Identity = 31/66 (46.97%), Postives = 43/66 (65.15%), Query Frame = 1 

Query: 1  MSSSQDKSS------MDLVQPNDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNL 60
          MSSS   S+      +    P + LCYV CN C+T+LAVG+PC  L +TVTV+CG+C+NL
Sbjct: 1  MSSSSSSSAVFPLDHLAAPSPTEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANL 60

[Close]
BLAST of Cp4.1LG01g15160 vs. Swiss-Prot
Match: YAB4_ORYSI (Protein YABBY 4 OS=Oryza sativa subsp. indica GN=YAB4 PE=3 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.3e-10
Identity = 31/66 (46.97%), Postives = 43/66 (65.15%), Query Frame = 1 

Query: 1  MSSSQDKSS------MDLVQPNDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNL 60
          MSSS   S+      +    P + LCYV CN C+T+LAVG+PC  L +TVTV+CG+C+NL
Sbjct: 1  MSSSSSSSAVFPLDHLAAPSPTEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANL 60

[Close]
BLAST of Cp4.1LG01g15160 vs. Swiss-Prot
Match: YAB1_ARATH (Axial regulator YABBY 1 OS=Arabidopsis thaliana GN=YAB1 PE=1 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.0e-09
Identity = 48/151 (31.79%), Postives = 74/151 (49.01%), Query Frame = 1 

Query: 2   SSSQDKSSMDLVQPNDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNLSFLSTRP 61
           S S    S D   P+DHLCYV+CNFC T+LAV +P   L +TVTV+CG C+NL  ++ R 
Sbjct: 8   SPSSAVCSPDHFSPSDHLCYVQCNFCQTILAVNVPYTSLFKTVTVRCGCCTNLLSVNMRS 67

Query: 62  -------PLQGQCIDHHPLTFQPQVGFSNDTQKGASISSTSSSSSMPNEPPSPNFVVKRD 121
                   LQ Q   H    F PQ     D  +    + ++ +  M N+ P+ N +    
Sbjct: 68  YVLPASNQLQLQLGPHS--YFNPQ-----DILEELRDAPSNMNMMMMNQHPTMNDIPSFM 127

Query: 122 STHQSCQ-PRNPTSRSIQCRSKKLGKVHSKF 145
             HQ  + P+ P       + +++   +++F
Sbjct: 128 DLHQQHEIPKAPPVNRPPEKRQRVPSAYNRF 151

[Close]
BLAST of Cp4.1LG01g15160 vs. TrEMBL
Match: A0A0A0KQW3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G606780 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.6e-39
Identity = 89/115 (77.39%), Postives = 102/115 (88.70%), Query Frame = 1 

Query: 1   MSSSQDKSSM-DLVQPNDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNLSFLST 60
           MS+S+DKSSM DLVQP++H CYVKCNFCNT+LAVGIPCR  L+TVTVKCG+CSNLSFLST
Sbjct: 1   MSNSEDKSSMADLVQPSEHFCYVKCNFCNTVLAVGIPCRHWLDTVTVKCGHCSNLSFLST 60

Query: 61  RPPLQGQCIDHHPLTFQPQVGFSND--TQKGASISSTSSSSSMPNEPPSPNFVVK 113
           RPPLQGQCID HPLTFQ QVGFSN+   +KGAS SSTS++SS+ N+  SPNFVVK
Sbjct: 61  RPPLQGQCID-HPLTFQSQVGFSNNDHIRKGASTSSTSTASSITND--SPNFVVK 112

[Close]
BLAST of Cp4.1LG01g15160 vs. TrEMBL
Match: A0A067KYR0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15738 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 5.1e-33
Identity = 76/116 (65.52%), Postives = 93/116 (80.17%), Query Frame = 1 

Query: 5   QDKSSMDLVQPNDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNLSFLSTRPPLQ 64
           ++K +MDLV P++HLCYV+CNFCNT+LAVGIPC+RLL+TVTVKCG+CSNLSFLSTRPPLQ
Sbjct: 4   EEKVTMDLVPPSEHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLSTRPPLQ 63

Query: 65  GQCIDHHPLTFQPQV--------GFSNDTQKGASISSTSSSSSMPNEPPSPNFVVK 113
           GQC+D HPLT Q  +        GF +D +KG S SS+SS+SS P  P +P FVVK
Sbjct: 64  GQCLD-HPLTLQVLIYVCTKKKQGFFSDLRKGQSSSSSSSTSSEPLSPKAP-FVVK 117

[Close]
BLAST of Cp4.1LG01g15160 vs. TrEMBL
Match: B9REB6_RICCO (Protein CRABS CLAW, putative OS=Ricinus communis GN=RCOM_1620070 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 3.3e-32
Identity = 74/108 (68.52%), Postives = 90/108 (83.33%), Query Frame = 1 

Query: 5   QDKSSMDLVQPNDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNLSFLSTRPPLQ 64
           ++K +MDLV P++HLCYV+CNFCNT+LAVGIPC+RLL+TVTVKCG+CSNLSFLSTRPPLQ
Sbjct: 4   EEKVTMDLVPPSEHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLSTRPPLQ 63

Query: 65  GQCIDHHPLTFQPQVGFSNDTQKGASISSTSSSSSMPNEPPSPNFVVK 113
           GQC+DH  LT Q    F +D +KG S SS+SS+SS P  P +P FVVK
Sbjct: 64  GQCLDHQ-LTLQ---SFFSDLKKGQSSSSSSSTSSEPLSPKAP-FVVK 106

[Close]
BLAST of Cp4.1LG01g15160 vs. TrEMBL
Match: D7T9Z4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g00140 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 3.7e-31
Identity = 72/103 (69.90%), Postives = 86/103 (83.50%), Query Frame = 1 

Query: 10  MDLVQPNDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNLSFLSTRPPLQGQCID 69
           MDLV P++HLCYV+CNFCNT+LAVGIPC+RLL+TVTVKCG+CSNLSFLSTRPPLQGQC+D
Sbjct: 1   MDLVPPSEHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLSTRPPLQGQCLD 60

Query: 70  HHPLTFQPQVGFSNDTQKGASISSTSSSSSMPNEPPSPNFVVK 113
           H  ++ Q   G  ND +KG S SS+SS+SS P  P +P FVVK
Sbjct: 61  HQ-MSLQ---GVCNDFRKGQSSSSSSSTSSEPVSPKAP-FVVK 98

[Close]
BLAST of Cp4.1LG01g15160 vs. TrEMBL
Match: A0A061EB61_THECC (Plant-specific transcription factor YABBY family protein OS=Theobroma cacao GN=TCM_011484 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.2e-29
Identity = 70/108 (64.81%), Postives = 84/108 (77.78%), Query Frame = 1 

Query: 5   QDKSSMDLVQPNDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNLSFLSTRPPLQ 64
           ++K  MDLV  ++HLCYV+CNFCNT+LAVGIPC+RLL+TVTVKCG+CSNLSFLSTRPPLQ
Sbjct: 72  EEKVGMDLVPQSEHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLSTRPPLQ 131

Query: 65  GQCIDHHPLTFQPQVGFSNDTQKGASISSTSSSSSMPNEPPSPNFVVK 113
           GQC+D  P T      F  D +KG S S +SS SS P+ P +P FVVK
Sbjct: 132 GQCLD--PQTSLSLQSFCGDFRKGQSPSPSSSPSSEPSSPKAP-FVVK 176

[Close]
BLAST of Cp4.1LG01g15160 vs. TAIR10
Match: AT1G69180.1 (AT1G69180.1 Plant-specific transcription factor YABBY family protein)

HSP 1 Score: 107.8 bits (268), Expect = 6.6e-24
Identity = 57/96 (59.38%), Postives = 71/96 (73.96%), Query Frame = 1 

Query: 17  DHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNLSFLSTRPPLQGQCIDHHPLTFQ 76
           +HL YV+C+ CNT+LAVGIP +R+L+TVTVKCG+C NLSFL+T PPLQG    H  LT Q
Sbjct: 19  EHLYYVRCSICNTILAVGIPLKRMLDTVTVKCGHCGNLSFLTTTPPLQG----HVSLTLQ 78

Query: 77  PQVGFSNDTQKGASISSTSSSSSMPNEPPSPNFVVK 113
            Q    +D +KG+S SS+SS+SS     PSP FVVK
Sbjct: 79  MQSFGGSDYKKGSSSSSSSSTSSDQPPSPSPPFVVK 110

[Close]
BLAST of Cp4.1LG01g15160 vs. TAIR10
Match: AT2G45190.1 (AT2G45190.1 Plant-specific transcription factor YABBY family protein)

HSP 1 Score: 63.9 bits (154), Expect = 1.1e-10
Identity = 48/151 (31.79%), Postives = 74/151 (49.01%), Query Frame = 1 

Query: 2   SSSQDKSSMDLVQPNDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNLSFLSTRP 61
           S S    S D   P+DHLCYV+CNFC T+LAV +P   L +TVTV+CG C+NL  ++ R 
Sbjct: 8   SPSSAVCSPDHFSPSDHLCYVQCNFCQTILAVNVPYTSLFKTVTVRCGCCTNLLSVNMRS 67

Query: 62  -------PLQGQCIDHHPLTFQPQVGFSNDTQKGASISSTSSSSSMPNEPPSPNFVVKRD 121
                   LQ Q   H    F PQ     D  +    + ++ +  M N+ P+ N +    
Sbjct: 68  YVLPASNQLQLQLGPHS--YFNPQ-----DILEELRDAPSNMNMMMMNQHPTMNDIPSFM 127

Query: 122 STHQSCQ-PRNPTSRSIQCRSKKLGKVHSKF 145
             HQ  + P+ P       + +++   +++F
Sbjct: 128 DLHQQHEIPKAPPVNRPPEKRQRVPSAYNRF 151

[Close]
BLAST of Cp4.1LG01g15160 vs. TAIR10
Match: AT4G00180.1 (AT4G00180.1 Plant-specific transcription factor YABBY family protein)

HSP 1 Score: 61.2 bits (147), Expect = 7.1e-10
Identity = 28/53 (52.83%), Postives = 35/53 (66.04%), Query Frame = 1 

Query: 2  SSSQDKSSMDLVQPNDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNL 55
          SSS      D     D LCYV C+FC+T+LAV +P   L +TVTV+CG+CSNL
Sbjct: 8  SSSAPAFPPDHFSSTDQLCYVHCSFCDTVLAVSVPPSSLFKTVTVRCGHCSNL 60

[Close]
BLAST of Cp4.1LG01g15160 vs. TAIR10
Match: AT2G26580.1 (AT2G26580.1 plant-specific transcription factor YABBY family protein)

HSP 1 Score: 60.8 bits (146), Expect = 9.3e-10
Identity = 36/98 (36.73%), Postives = 54/98 (55.10%), Query Frame = 1 

Query: 13  VQPNDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNLSFLSTRPPLQGQCIDHHP 72
           V   + LCY+ CNFCN +LAV +PC  L + VTV+CG+C+NL  ++    LQ     +  
Sbjct: 5   VMATEQLCYIPCNFCNIILAVNVPCSSLFDIVTVRCGHCTNLWSVNMAAALQSLSRPNFQ 64

Query: 73  LT--FQPQVGFS--NDTQKGASISS-TSSSSSMPNEPP 106
            T    P+ G S  + T+  + IS+ T +   + N PP
Sbjct: 65  ATNYAVPEYGSSSRSHTKIPSRISTRTITEQRIVNRPP 102

[Close]
BLAST of Cp4.1LG01g15160 vs. TAIR10
Match: AT1G08465.1 (AT1G08465.1 Plant-specific transcription factor YABBY family protein)

HSP 1 Score: 52.8 bits (125), Expect = 2.5e-07
Identity = 33/95 (34.74%), Postives = 50/95 (52.63%), Query Frame = 1 

Query: 16  NDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNLSFL--------STRPPLQGQC 75
           ++ +CYV C+FC T+LAV +P   L   VTV+CG+C+NL  L        ++ PP+    
Sbjct: 7   SERVCYVHCSFCTTILAVSVPYASLFTLVTVRCGHCTNLLSLNIGVSLHQTSAPPI---- 66

Query: 76  IDHHPLTFQPQVGFSNDTQKGASISSTSSSSSMPN 103
             H  L    Q   S  T+K  + SS S+++   N
Sbjct: 67  --HQDLQPHRQHTTSLVTRKDCASSSRSTNNLSEN 95

[Close]
BLAST of Cp4.1LG01g15160 vs. NCBI nr
Match: gi|659091256|ref|XP_008446454.1| (PREDICTED: protein CRABS CLAW [Cucumis melo])

HSP 1 Score: 170.6 bits (431), Expect = 2.4e-39
Identity = 89/115 (77.39%), Postives = 102/115 (88.70%), Query Frame = 1 

Query: 1   MSSSQDKSSM-DLVQPNDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNLSFLST 60
           MS+S+DKSSM DLVQP++H CYVKCNFCNT+LAVGIPCR  L+TVTVKCG+CSNLSFLST
Sbjct: 1   MSNSEDKSSMADLVQPSEHFCYVKCNFCNTVLAVGIPCRHWLDTVTVKCGHCSNLSFLST 60

Query: 61  RPPLQGQCIDHHPLTFQPQVGFSND--TQKGASISSTSSSSSMPNEPPSPNFVVK 113
           RPPLQGQCID HPLTFQ QVGFSN+   +KGAS SSTS++SS+ N+  SPNFVVK
Sbjct: 61  RPPLQGQCID-HPLTFQSQVGFSNNDHIRKGASTSSTSTASSITND--SPNFVVK 112

[Close]
BLAST of Cp4.1LG01g15160 vs. NCBI nr
Match: gi|802568623|ref|XP_012067815.1| (PREDICTED: protein CRABS CLAW isoform X1 [Jatropha curcas])

HSP 1 Score: 153.3 bits (386), Expect = 3.9e-34
Identity = 77/108 (71.30%), Postives = 93/108 (86.11%), Query Frame = 1 

Query: 5   QDKSSMDLVQPNDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNLSFLSTRPPLQ 64
           ++K +MDLV P++HLCYV+CNFCNT+LAVGIPC+RLL+TVTVKCG+CSNLSFLSTRPPLQ
Sbjct: 4   EEKVTMDLVPPSEHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLSTRPPLQ 63

Query: 65  GQCIDHHPLTFQPQVGFSNDTQKGASISSTSSSSSMPNEPPSPNFVVK 113
           GQC+D HPLT Q Q GF +D +KG S SS+SS+SS P  P +P FVVK
Sbjct: 64  GQCLD-HPLTLQKQ-GFFSDLRKGQSSSSSSSTSSEPLSPKAP-FVVK 108

[Close]
BLAST of Cp4.1LG01g15160 vs. NCBI nr
Match: gi|802568654|ref|XP_012067816.1| (PREDICTED: protein CRABS CLAW isoform X2 [Jatropha curcas])

HSP 1 Score: 151.4 bits (381), Expect = 1.5e-33
Identity = 76/108 (70.37%), Postives = 92/108 (85.19%), Query Frame = 1 

Query: 5   QDKSSMDLVQPNDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNLSFLSTRPPLQ 64
           ++K +MDLV P++HLCYV+CNFCNT+LAVGIPC+RLL+TVTVKCG+CSNLSFLSTRPPLQ
Sbjct: 4   EEKVTMDLVPPSEHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLSTRPPLQ 63

Query: 65  GQCIDHHPLTFQPQVGFSNDTQKGASISSTSSSSSMPNEPPSPNFVVK 113
           GQC+D HPLT Q   GF +D +KG S SS+SS+SS P  P +P FVVK
Sbjct: 64  GQCLD-HPLTLQ---GFFSDLRKGQSSSSSSSTSSEPLSPKAP-FVVK 106

[Close]
BLAST of Cp4.1LG01g15160 vs. NCBI nr
Match: gi|643734661|gb|KDP41331.1| (hypothetical protein JCGZ_15738 [Jatropha curcas])

HSP 1 Score: 149.1 bits (375), Expect = 7.4e-33
Identity = 76/116 (65.52%), Postives = 93/116 (80.17%), Query Frame = 1 

Query: 5   QDKSSMDLVQPNDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNLSFLSTRPPLQ 64
           ++K +MDLV P++HLCYV+CNFCNT+LAVGIPC+RLL+TVTVKCG+CSNLSFLSTRPPLQ
Sbjct: 4   EEKVTMDLVPPSEHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLSTRPPLQ 63

Query: 65  GQCIDHHPLTFQPQV--------GFSNDTQKGASISSTSSSSSMPNEPPSPNFVVK 113
           GQC+D HPLT Q  +        GF +D +KG S SS+SS+SS P  P +P FVVK
Sbjct: 64  GQCLD-HPLTLQVLIYVCTKKKQGFFSDLRKGQSSSSSSSTSSEPLSPKAP-FVVK 117

[Close]
BLAST of Cp4.1LG01g15160 vs. NCBI nr
Match: gi|225423420|ref|XP_002263611.1| (PREDICTED: protein CRABS CLAW isoform X2 [Vitis vinifera])

HSP 1 Score: 146.7 bits (369), Expect = 3.7e-32
Identity = 73/108 (67.59%), Postives = 91/108 (84.26%), Query Frame = 1 

Query: 5   QDKSSMDLVQPNDHLCYVKCNFCNTLLAVGIPCRRLLETVTVKCGNCSNLSFLSTRPPLQ 64
           ++K++MDLV P++HLCYV+CNFCNT+LAVGIPC+RLL+TVTVKCG+CSNLSFLSTRPPLQ
Sbjct: 4   EEKATMDLVPPSEHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLSTRPPLQ 63

Query: 65  GQCIDHHPLTFQPQVGFSNDTQKGASISSTSSSSSMPNEPPSPNFVVK 113
           GQC+DH  ++ Q   G  ND +KG S SS+SS+SS P  P +P FVVK
Sbjct: 64  GQCLDHQ-MSLQ---GVCNDFRKGQSSSSSSSTSSEPVSPKAP-FVVK 106

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g15160 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CRC_ARATH1.2e-2259.38Protein CRABS CLAW OS=Arabidopsis thaliana GN=CRC PE=1 SV=2[more]
YABDL_ORYSJ1.4e-2052.38Protein DROOPING LEAF OS=Oryza sativa subsp. japonica GN=DL PE=1 SV=1[more]
YAB4_ORYSJ2.3e-1046.97Protein YABBY 4 OS=Oryza sativa subsp. japonica GN=YAB4 PE=2 SV=1[more]
YAB4_ORYSI2.3e-1046.97Protein YABBY 4 OS=Oryza sativa subsp. indica GN=YAB4 PE=3 SV=1[more]
YAB1_ARATH2.0e-0931.79Axial regulator YABBY 1 OS=Arabidopsis thaliana GN=YAB1 PE=1 SV=1[more]
BLAST of Cp4.1LG01g15160 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KQW3_CUCSA1.6e-3977.39Uncharacterized protein OS=Cucumis sativus GN=Csa_5G606780 PE=4 SV=1[more]
A0A067KYR0_JATCU5.1e-3365.52Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15738 PE=4 SV=1[more]
B9REB6_RICCO3.3e-3268.52Protein CRABS CLAW, putative OS=Ricinus communis GN=RCOM_1620070 PE=4 SV=1[more]
D7T9Z4_VITVI3.7e-3169.90Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g00140 PE=4 SV=... [more]
A0A061EB61_THECC1.2e-2964.81Plant-specific transcription factor YABBY family protein OS=Theobroma cacao GN=T... [more]
BLAST of Cp4.1LG01g15160 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G69180.16.6e-2459.38 Plant-specific transcription factor YABBY family protein[more]
AT2G45190.11.1e-1031.79 Plant-specific transcription factor YABBY family protein[more]
AT4G00180.17.1e-1052.83 Plant-specific transcription factor YABBY family protein[more]
AT2G26580.19.3e-1036.73 plant-specific transcription factor YABBY family protein[more]
AT1G08465.12.5e-0734.74 Plant-specific transcription factor YABBY family protein[more]
BLAST of Cp4.1LG01g15160 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659091256|ref|XP_008446454.1|2.4e-3977.39PREDICTED: protein CRABS CLAW [Cucumis melo][more]
gi|802568623|ref|XP_012067815.1|3.9e-3471.30PREDICTED: protein CRABS CLAW isoform X1 [Jatropha curcas][more]
gi|802568654|ref|XP_012067816.1|1.5e-3370.37PREDICTED: protein CRABS CLAW isoform X2 [Jatropha curcas][more]
gi|643734661|gb|KDP41331.1|7.4e-3365.52hypothetical protein JCGZ_15738 [Jatropha curcas][more]
gi|225423420|ref|XP_002263611.1|3.7e-3267.59PREDICTED: protein CRABS CLAW isoform X2 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0007275multicellular organism development
Vocabulary: INTERPRO
TermDefinition
IPR006780YABBY
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016043 cellular component organization
biological_process GO:0010582 floral meristem determinacy
biological_process GO:0048827 phyllome development
biological_process GO:0048438 floral whorl development
biological_process GO:0048437 floral organ development
biological_process GO:0009987 cellular process
biological_process GO:0007275 multicellular organism development
biological_process GO:0048507 meristem development
biological_process GO:0048440 carpel development
biological_process GO:0048443 stamen development
biological_process GO:0010093 specification of floral organ identity
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0009909 regulation of flower development
biological_process GO:0031540 regulation of anthocyanin biosynthetic process
biological_process GO:0009860 pollen tube growth
biological_process GO:0009944 polarity specification of adaxial/abaxial axis
biological_process GO:0048479 style development
biological_process GO:0010254 nectary development
biological_process GO:1901576 organic substance biosynthetic process
biological_process GO:0009886 post-embryonic animal morphogenesis
biological_process GO:0003002 regionalization
biological_process GO:0009889 regulation of biosynthetic process
biological_process GO:0080090 regulation of primary metabolic process
biological_process GO:0008150 biological_process
biological_process GO:0009827 plant-type cell wall modification
biological_process GO:0006333 chromatin assembly or disassembly
biological_process GO:0048441 petal development
biological_process GO:0048481 plant ovule development
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g15160.1Cp4.1LG01g15160.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006780YABBY proteinPANTHERPTHR31675FAMILY NOT NAMEDcoord: 5..112
score: 3.3
IPR006780YABBY proteinPFAMPF04690YABBYcoord: 15..108
score: 3.1
NoneNo IPR availablePANTHERPTHR31675:SF3SUBFAMILY NOT NAMEDcoord: 5..112
score: 3.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g15160Cucsa.284430Cucumber (Gy14) v1cgycpeB0754
Cp4.1LG01g15160CmaCh18G010980Cucurbita maxima (Rimu)cmacpeB432
Cp4.1LG01g15160CmaCh04G017090Cucurbita maxima (Rimu)cmacpeB720
Cp4.1LG01g15160CmoCh18G011200Cucurbita moschata (Rifu)cmocpeB395
Cp4.1LG01g15160CmoCh04G017950Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g15160Csa5G606780Cucumber (Chinese Long) v2cpecuB416
Cp4.1LG01g15160CSPI05G24410Wild cucumber (PI 183967)cpecpiB415
Cp4.1LG01g15160MELO3C034075.2Melon (DHL92) v3.6.1cpemedB437
Cp4.1LG01g15160CsaV3_5G033400Cucumber (Chinese Long) v3cpecucB0518
Cp4.1LG01g15160Bhi07G001214Wax gourdcpewgoB0568
Cp4.1LG01g15160CsGy5G023910Cucumber (Gy14) v2cgybcpeB626
Cp4.1LG01g15160Carg17317Silver-seed gourdcarcpeB0148
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG01g15160Cp4.1LG09g02290Cucurbita pepo (Zucchini)cpecpeB034
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g15160Wild cucumber (PI 183967)cpecpiB379
Cp4.1LG01g15160Cucumber (Chinese Long) v2cpecuB379
Cp4.1LG01g15160Bottle gourd (USVL1VR-Ls)cpelsiB360
Cp4.1LG01g15160Watermelon (Charleston Gray)cpewcgB393
Cp4.1LG01g15160Watermelon (97103) v1cpewmB432
Cp4.1LG01g15160Melon (DHL92) v3.5.1cpemeB377
Cp4.1LG01g15160Cucumber (Gy14) v2cgybcpeB060
Cp4.1LG01g15160Melon (DHL92) v3.6.1cpemedB454
Cp4.1LG01g15160Melon (DHL92) v3.6.1cpemedB459
Cp4.1LG01g15160Silver-seed gourdcarcpeB0344
Cp4.1LG01g15160Cucumber (Chinese Long) v3cpecucB0471
Cp4.1LG01g15160Wax gourdcpewgoB0550