CmoCh04G015080 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G015080
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionRNA-directed RNA polymerase VP2
LocationCmo_Chr04 : 7722412 .. 7726594 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCAGTGGCAGAAATTGTTCCGATTAGCGCGAGTGGATCACAAAAATCCGCGCGCTTCGTCTTTGTAGCGCAGAATGAGAAGCATTTCCTTTGCCGTTGTTGTCAACTACCTTACACCAACGATTCTCATCTCACCGCTATGAACCTCTAATCTTCACTATCAAACTCTTCAAAACTGTACTCAAAGTTCCTGCCCTGTGATCTTCTCTGCAAGTTTAATCCCTCTCCTCAGTAGCGTTTTAGATGGCAATGATTCTCAAAGGAGGAGGCGGAATTGGAGTTTCAACTGCTACTTACTTTCCTCAGAATTCCAAACCTTCCCCAGTATTCTCGGTTCACACGGTATGTTTACTCGTTTTGTTCTTATTCCGATTCTGATTTCATTTCTGGTTCTTATTCTGTTATTCTTGGTTTGATTCTGCTATGAATAGACGTACAATTTATTCCTGACTTGATTGCGCTTTAACTGTTTTACCTTTTTCAAGTTTCGTACTCTCTTTTATGGCGTAGTTCTTAGAAACTCGTAGTCGATTTTACTTGGTTATATTCTTCTGACTTAGATGTGAAGTGCTCGAGTAAAAGGAGGAAAAGAGGAAAACGAAGCTTAAAATTCTCCCTAGAATCAACGTGTTTGTTAGTTTTGGTTCCAAAACTACGGTATCCACCGATTGATTAGCAACATGATTTGGAATTGTAATCCGAAAATAAACCAGGTCCCACTCCAGAAGAGAAAAATACTATTAGGACTTTGAAATTATTTGTACTTAAAAACTATTTCAGCATTTGAATGTGTTATATCATCATTGAACACTAAAGGTTAAGTTCCAATAAATTTAGTTTTTAATTCATGTTCTTATTATTTCTTTTTACATGTAGGCTTGGATATTGGCACGAAGTGAAACAAATGGTTACCGATAGTAGTGGTAGATGAAATGACTTTGTAAGGGTTCGAAATATAGGATCTATTACCCTAATATCATCATGATTAATCATAATTGAACCCGAAAATTAAAGTTGGTGAATTCTTAACAGTGTTCTTTTCTTTTCTTTTCTTTTCTTTTTTTTTTGTTTTGTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTCTTCTCTCCTGTTTCCATTGGGGGCAGAGTCATGAACAAGATAGAGATAGATCTGGGGAGGGAAGATTCAGTTAGTTGAGAAAAAATGTATGAGTTCAAAATGGATCGAGGAAGGTATCCATACCTTCAAATCACTCCACTAGATGGAAAGATGATGCTTTAGGTAGCGTTCATATGTACATAGATTAAGAATATTACATTATAAATATAGAAGAAGAGATTCTGTAATAGCCCAAGCTCACCGCTAGCCTATATTGTCCTCTTTGGGCTTTCCCTTTTGGACTTCCTCTCAAGACTTTTAAAACGCGTATGTTAGGGAGAGGTTTCCACACCCTTATAAGGGATGCTTCGTTCCCCTCAACCGACTTGGGATCTCACAATCCACCCCCCTTGGGGGTCCAGTGTCCTCGCTGGCACACCGCTCGGTGTCTGGCTCTTATACCATTTGTAACAACCCAAACTCACCGCAAATAGATATTGTCCTCTTTCGGTTTGCCCTTTGTTCTTCCCCTCAAAGTTTTAAAACACATTTGCTAGGGAGAGGTTTCCACACCCTTATAAAAGTGTTTTGTTCCCTTCTTCAACCGATGTGGGATCTCACAAATTCAGACCTAAGATATGAGACACTTATGCCTAAGTTCCAAACCACCTTGCTCGAGTCGGTGATGTGGTAGGTGGGTAGTGGCAAAAAACGTCAGAATGGTTGAGCCATAGTTTCTGCCTTAGGTTTGTTTTTAGAAATAAGTTTTTCCTACATTCACGATTTTGTTGCATGCCTGCCATACCAGAAAGAACACATGAGTTCAAGCCAGTACTTTTTAGTATACAAAAATCTACTAGAGCAGTGGAGTGATAGTATCACCTAGCGTTTATGGTTATAGTTGGAATCTATCATCTCTATTCATCTTTACAGATTGCATCCTGCTCTTCATTTCATAAATTTAGTTTACCAATAAGAGTGGATATAACTGAAGTTGAATTGTGCAGGTACATAAGCTTCCAGCTGAACGCAGAGTCATATGCTGCTCTACCTTGCAGGAATCATCTACCCCAACAGGTTAGTTGCTGGCAATTCTTTCAAAGTACACCACTGAAAGATTGACAGAGTGACCCCTGAGTAGCATGGATACTAATAGACATGACACCGACACAATGACCCGTCATTTTTGAAAAGCTAGATCGTGGATACGAAAAAAACGTGTTTATTGATATATATCATTTTTATACCAAAAGGAAATTTAACGTCAAAAGTTTTTTTCATTTATATGCTAAAAAAAACTATTCGAATGTATTTCACGATCAAAACTTATTATTTTCATTATAATTAACAAGTGTTAATACGTGTCTAACAAATGTTCGGACGATTGTCTATTGCTAACAAGTATACAGTATGTGTCCAACAATTATTGCAGCGTCCAAGTGCGCTAGCCAAACTAAAATGTTTATGCTTGTTAGGTGACCCTAATAAATTTTGTCTATCTTTCTTCTGTTTCAAATGAAAAGGGTCAGGCTCGGGTTTATTTGTTTCTTTCTGCTGCGTTTATTAATACTCAATTTATGGCATCCGCTAAAGTAGAAGTCTTTTCTATCAGTTTCTGCGGAGCCAAAGGAGATAAAGGCAGTTCAGAAGGAAGCTCCAGCAAAGCCCAAACCGCCAGCAAAAGCGCCAGTGAAGCCACTGCCTCAAATGATGGAGGAAGATGTCATACCTTCACTCAAAGCGATACTTGAAGCACAAGCCGATGTTGCTGATATCGAGTTATCCTTCCAAGATGACAGAGTTAGTTTCTTCCATCCCAATTAACGTTCACTAATAAACTCTTAGCTTCAGCTCATTGAATTTGGGTTGACAATGGCAGTTGGATGGTTCATTCTCGAAAAATGGAGTTCCCTACTCATTTTGGGCTTTCTTCCCCAATGGCCTCACAGGTACTTAATTCTTCTCAGAGAACGTAACTATTTTACCATTGTCATCACCCTTTAGCTTCTGGTTTTCACTGCCTTTCGTTAAATACAAAAATGGTGAACGTAACAAATTAGGACAATATCTACTAGTGATGAACATATCAAAAGCTATCCTTCAAGTAGAAATCTATTACATTGCTAGATGAAAGTTGAGATTTAGAATAGCATAGCGGTGAGCTTGGATAAAAATTAGCACGCGAGCATTGCTACACCTATCTAGGTCTAAATTTCCATTTATAGTTTTAACGGATTTCTACATCAAGGGATAGTTTTCAAACATTTATAAAATGTGTTTAGAAATATTGCAACTTATGAGTAAAAAAAAAAAGAGAAAAAAACATCTAAACTCAATGTCTAATCTTGTTGGAACAGGTCCAAAAGGGTTTTCACTATCCTCATATGGCAATGGAGGAAGCTCTGTTGAGCCATTTCTGGTGGATGAGAAGAAAGTTACAGCAAAGCTTTTAGTTTTTTGGATTGAGAAACGTTTGGCTGCACAAGGAATTATTCCTGTCTGGAAAGACTAATCAACAAAATTATTATTCTTTTCCTTTTTTTTCTTTTTTCGGTGGGGGGCTTCCTTGCAAATGATGTATAGCATAATTCTCCATTCTATTGCATTGCTCCAACAATGTCAACTGTTCCTATGAAATGTATCAACTTTTTAGTCCACAACATAATCTCCTCCCTTGTTTACTATTTAGGAGCTTAATGTTACCTTGCATGACAAAATGTAAATTCTACATCATCTTCAATTGCCATTACGGCACGTGCATGTACTTCTTATCTTGAAGTTATTAGTTCGAATCTCTATACCCCACTTTGGT

mRNA sequence

GCAGTGGCAGAAATTGTTCCGATTAGCGCGAGTGGATCACAAAAATCCGCGCGCTTCGTCTTTGTAGCGCAGAATGAGAAGCATTTCCTTTGCCGTTGTTGTCAACTACCTTACACCAACGATTCTCATCTCACCGCTATGAACCTCTAATCTTCACTATCAAACTCTTCAAAACTGTACTCAAAGTTCCTGCCCTGTGATCTTCTCTGCAAGTTTAATCCCTCTCCTCAGTAGCGTTTTAGATGGCAATGATTCTCAAAGGAGGAGGCGGAATTGGAGTTTCAACTGCTACTTACTTTCCTCAGAATTCCAAACCTTCCCCAGTATTCTCGGTTCACACGGTACATAAGCTTCCAGCTGAACGCAGAGTCATATGCTGCTCTACCTTGCAGGAATCATCTACCCCAACAGTTTCTGCGGAGCCAAAGGAGATAAAGGCAGTTCAGAAGGAAGCTCCAGCAAAGCCCAAACCGCCAGCAAAAGCGCCAGTGAAGCCACTGCCTCAAATGATGGAGGAAGATGTCATACCTTCACTCAAAGCGATACTTGAAGCACAAGCCGATGTTGCTGATATCGAGTTATCCTTCCAAGATGACAGATTGGATGGTTCATTCTCGAAAAATGGAGTTCCCTACTCATTTTGGGCTTTCTTCCCCAATGGCCTCACAGGTCCAAAAGGGTTTTCACTATCCTCATATGGCAATGGAGGAAGCTCTGTTGAGCCATTTCTGGTGGATGAGAAGAAAGTTACAGCAAAGCTTTTAGTTTTTTGGATTGAGAAACGTTTGGCTGCACAAGGAATTATTCCTGTCTGGAAAGACTAATCAACAAAATTATTATTCTTTTCCTTTTTTTTCTTTTTTCGGTGGGGGGCTTCCTTGCAAATGATGTATAGCATAATTCTCCATTCTATTGCATTGCTCCAACAATGTCAACTGTTCCTATGAAATGTATCAACTTTTTAGTCCACAACATAATCTCCTCCCTTGTTTACTATTTAGGAGCTTAATGTTACCTTGCATGACAAAATGTAAATTCTACATCATCTTCAATTGCCATTACGGCACGTGCATGTACTTCTTATCTTGAAGTTATTAGTTCGAATCTCTATACCCCACTTTGGT

Coding sequence (CDS)

ATGGCAATGATTCTCAAAGGAGGAGGCGGAATTGGAGTTTCAACTGCTACTTACTTTCCTCAGAATTCCAAACCTTCCCCAGTATTCTCGGTTCACACGGTACATAAGCTTCCAGCTGAACGCAGAGTCATATGCTGCTCTACCTTGCAGGAATCATCTACCCCAACAGTTTCTGCGGAGCCAAAGGAGATAAAGGCAGTTCAGAAGGAAGCTCCAGCAAAGCCCAAACCGCCAGCAAAAGCGCCAGTGAAGCCACTGCCTCAAATGATGGAGGAAGATGTCATACCTTCACTCAAAGCGATACTTGAAGCACAAGCCGATGTTGCTGATATCGAGTTATCCTTCCAAGATGACAGATTGGATGGTTCATTCTCGAAAAATGGAGTTCCCTACTCATTTTGGGCTTTCTTCCCCAATGGCCTCACAGGTCCAAAAGGGTTTTCACTATCCTCATATGGCAATGGAGGAAGCTCTGTTGAGCCATTTCTGGTGGATGAGAAGAAAGTTACAGCAAAGCTTTTAGTTTTTTGGATTGAGAAACGTTTGGCTGCACAAGGAATTATTCCTGTCTGGAAAGACTAA
Homology
[Close]
BLAST of CmoCh04G015080 vs. TrEMBL
Match: A0A0A0KUS0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G614630 PE=4 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 1.1e-89
Identity = 170/194 (87.63%), Postives = 182/194 (93.81%), Query Frame = 1 

Query: 1   MAMILKGGGGIGVSTATYFPQNSKPSPVFSVHT-VHKLPAERRVICCSTLQESSTPTVSA 60
           MAMILKGG GIGVSTATYFP N KPSP+FS+H  VHKL AER+VICCSTLQESSTPTV+A
Sbjct: 1   MAMILKGGRGIGVSTATYFPHNPKPSPLFSLHMMVHKLAAERKVICCSTLQESSTPTVAA 60

Query: 61  EPKEIKAVQKEAPAKPKPPAKAPVKPLPQMMEEDVIPSLKAILEAQADVADIELSFQDDR 120
           EPKEIK V KEAPAK KPPAKAPVKPLP++M+E+VIPSLKAILEAQADV+D+ LSFQDDR
Sbjct: 61  EPKEIKTVPKEAPAKAKPPAKAPVKPLPELMDEEVIPSLKAILEAQADVSDVALSFQDDR 120

Query: 121 LDGSFSKNGVPYSFWAFFPNGLTGPKGFSLSSYGNGGSSVEPFLVDEKKVTAKLLVFWIE 180
           LDGSF KNGVPYSFWAFFPNGLTGPKGFSLSSYGNGGSSVEPFLVDEKKV+ KL+VFWIE
Sbjct: 121 LDGSFLKNGVPYSFWAFFPNGLTGPKGFSLSSYGNGGSSVEPFLVDEKKVSGKLIVFWIE 180

Query: 181 KRLAAQGIIPVWKD 194
           KRLAAQGIIPVWKD
Sbjct: 181 KRLAAQGIIPVWKD 194

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BLAST of CmoCh04G015080 vs. TrEMBL
Match: F6H8E9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s2377g00010 PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 4.0e-63
Identity = 131/197 (66.50%), Postives = 163/197 (82.74%), Query Frame = 1 

Query: 11  IGVST---ATYFPQNSKPS----PVFSVH--TVHKLPAE----RRVICCSTLQESSTPTV 70
           IGVS+   ++YF + S+ +    P+   H   +H++  +    RR+I CS +QESSTPTV
Sbjct: 6   IGVSSFPSSSYFTRKSEATSSTLPLCLRHGQCMHQMAGKPVTSRRIIACSAVQESSTPTV 65

Query: 71  SAEPKEIKAVQKEAPAKPKPPAKAPVKPLPQMMEEDVIPSLKAILEAQADVADIELSFQD 130
           +AE KE+K  Q++ PAKPKPPAKAPVKPLPQMMEEDVIPSLK+ILEAQ D+++IELSFQD
Sbjct: 66  AAETKEVKPAQEKGPAKPKPPAKAPVKPLPQMMEEDVIPSLKSILEAQDDLSEIELSFQD 125

Query: 131 DRLDGSFSKNGVPYSFWAFFPNG-LTGPKGFSLSSYGNGGSSVEPFLVDEKKVTAKLLVF 190
           +RL+GSF K G+PYSFWAFFPNG LTGPKGFSLSSYG+G S+VEPFL+DEK++TAK +VF
Sbjct: 126 NRLEGSFQKKGIPYSFWAFFPNGVLTGPKGFSLSSYGSGSSTVEPFLIDEKRITAKHVVF 185

Query: 191 WIEKRLAAQGIIPVWKD 194
           W+EKRLAAQGIIPVWK+
Sbjct: 186 WVEKRLAAQGIIPVWKE 202

[Close]
BLAST of CmoCh04G015080 vs. TrEMBL
Match: A5ATF4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_015578 PE=4 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 7.9e-59
Identity = 130/215 (60.47%), Postives = 162/215 (75.35%), Query Frame = 1 

Query: 11  IGVST---ATYFPQNSKPS----PVFSVH--TVHKLPAE----RRVICCSTLQESSTPT- 70
           IGVS+   ++YF + S+ +    P+   H   +H++  +    RR+I CS +QESSTPT 
Sbjct: 6   IGVSSFPSSSYFTRKSEATSSTLPLCLRHGQCMHQMAGKPVTSRRIIACSAVQESSTPTD 65

Query: 71  -----------------VSAEPKEIKAVQKEAPAKPKPPAKAPVKPLPQMMEEDVIPSLK 130
                            V+AE KE+K  Q++ PAKPKPPAKAPVKPLPQMMEEDVIPSLK
Sbjct: 66  EWKGLDWSSMYSTCFYLVAAETKEVKPAQEKGPAKPKPPAKAPVKPLPQMMEEDVIPSLK 125

Query: 131 AILEAQADVADIELSFQDDRLDGSFSKNGVPYSFWAFFPNG-LTGPKGFSLSSYGNGGSS 190
           +ILEAQ D+++IELSFQD+RL+GSF K G+PYSFWAFF NG LTGPKGFSLSSYG+G S+
Sbjct: 126 SILEAQDDLSEIELSFQDNRLEGSFQKKGIPYSFWAFFXNGVLTGPKGFSLSSYGSGSST 185

Query: 191 VEPFLVDEKKVTAKLLVFWIEKRLAAQGIIPVWKD 194
           VEPFL+DEK++TAK +VFW+EKRLAAQGIIPVWK+
Sbjct: 186 VEPFLIDEKRITAKHVVFWVEKRLAAQGIIPVWKE 220

[Close]
BLAST of CmoCh04G015080 vs. TrEMBL
Match: A0A067E764_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029104mg PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 1.5e-57
Identity = 125/199 (62.81%), Postives = 154/199 (77.39%), Query Frame = 1 

Query: 3   MILKGGGGIGVST---ATYFPQNSKP-SPVFSVHTVHKLPAERRVICCSTLQESSTPTVS 62
           M + GG  +GVS+   ++YF +N K  S  F +       A R  I CS +QE+ST  V+
Sbjct: 1   MSILGGRAVGVSSFPSSSYFSRNVKSTSSAFPLQMACTSAALRGCIACSAVQETSTSAVA 60

Query: 63  AEPKEIKAVQKEAPAKPKPPA---KAPVKPLPQMMEEDVIPSLKAILEAQADVADIELSF 122
           AE KE K V+KEAPAKPKPPA   KAP KPLP++MEEDVIPSLKAILEAQ D+++IEL F
Sbjct: 61  AETKEAKPVEKEAPAKPKPPARAPKAPAKPLPELMEEDVIPSLKAILEAQDDLSNIELCF 120

Query: 123 QDDRLDGSFSKNGVPYSFWAFFPNG-LTGPKGFSLSSYGNGGSSVEPFLVDEKKVTAKLL 182
           +D++L+GSF K G  YSFWAFFPNG L GPKGFSLSSYG+G S+VEPFL+DEKK+TA+ +
Sbjct: 121 KDNKLEGSFMKKGNNYSFWAFFPNGILAGPKGFSLSSYGSGASTVEPFLIDEKKITARHV 180

Query: 183 VFWIEKRLAAQGIIPVWKD 194
           VFW+EKRLAAQGI+PVWK+
Sbjct: 181 VFWVEKRLAAQGILPVWKE 199

[Close]
BLAST of CmoCh04G015080 vs. TrEMBL
Match: M5WEP3_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa021078mg PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 1.5e-57
Identity = 118/163 (72.39%), Postives = 136/163 (83.44%), Query Frame = 1 

Query: 32  HTVHKLPAERRVICCSTLQESSTPTVSAEPKEIKAVQKEAPAKPKPPAKAPVKPLPQMME 91
           HTV KL   +R I CS L ESST TV+A+ KE+K  QK APAKPK  AKAPVKPLPQMME
Sbjct: 2   HTVSKLVTSQRNIVCSALPESSTSTVAADTKEVKTAQKAAPAKPKVAAKAPVKPLPQMME 61

Query: 92  EDVIPSLKAILEAQADVADIELSFQDDRLDGSFSKNGVPYSFWAFFPNG-LTGPKGFSLS 151
           EDVIP LKAILE Q +++DIELSFQ+++L+G F K  + YSFWAFFP+G LTGPKGFSLS
Sbjct: 62  EDVIPQLKAILETQDELSDIELSFQENKLEGFFLKKDIRYSFWAFFPSGVLTGPKGFSLS 121

Query: 152 SYGNGGSSVEPFLVDEKKVTAKLLVFWIEKRLAAQGIIPVWKD 194
           SYG G S+VEPFL+DEKK+TAK +VFW+EKRLAAQGIIPVWKD
Sbjct: 122 SYGQGASTVEPFLIDEKKITAKHIVFWVEKRLAAQGIIPVWKD 164

[Close]
BLAST of CmoCh04G015080 vs. TAIR10
Match: AT2G04039.3 (AT2G04039.3 unknown protein)

HSP 1 Score: 103.6 bits (257), Expect = 1.4e-22
Identity = 80/197 (40.61%), Postives = 102/197 (51.78%), Query Frame = 1 

Query: 1   MAMILKGGGGIGVSTATYFPQNSKPSPVFSVHTVHKLPAERRVICCSTLQESSTPTVSAE 60
           MA I  G  G+  S  +        S +    T+     +  ++ C+ LQESST  V+ E
Sbjct: 1   MATIAGGSFGVPSSRISITTPTLSSSSLLPPLTLQSGTRKDNLLRCA-LQESSTSAVATE 60

Query: 61  PKEIKAVQKEAPA----KPKPPAKAPV--KPLPQMMEEDVIPSLKAILEAQADVADIELS 120
            K  +  ++   A    KPKP AKA    KPL QMMEEDVIP L+AILE+Q D++DI+LS
Sbjct: 61  KKNKEEGEESTVAVPAKKPKPAAKAAAVAKPLRQMMEEDVIPPLQAILESQDDISDIDLS 120

Query: 121 FQDDRLDGSFSKNGVPYSFWAFFPNG-LTG-PKGFSLSSYGNGGSSVEPFLVDEKKVTAK 180
           FQDD+L+G F K  +PYSFWAFFP G LTG  K F     G   +    FL         
Sbjct: 121 FQDDKLEGFFLKKSIPYSFWAFFPTGNLTGEQKDFQFPHTGQVRAPWNHFLSTRGNQLRT 180

Query: 181 LLVFWIEKRLAAQGIIP 190
            L F     L  +G  P
Sbjct: 181 TLCFGSRSVLLHKGSSP 196

[Close]
BLAST of CmoCh04G015080 vs. NCBI nr
Match: gi|449434508|ref|XP_004135038.1| (PREDICTED: uncharacterized protein LOC101205552 [Cucumis sativus])

HSP 1 Score: 337.4 bits (864), Expect = 1.6e-89
Identity = 170/194 (87.63%), Postives = 182/194 (93.81%), Query Frame = 1 

Query: 1   MAMILKGGGGIGVSTATYFPQNSKPSPVFSVHT-VHKLPAERRVICCSTLQESSTPTVSA 60
           MAMILKGG GIGVSTATYFP N KPSP+FS+H  VHKL AER+VICCSTLQESSTPTV+A
Sbjct: 1   MAMILKGGRGIGVSTATYFPHNPKPSPLFSLHMMVHKLAAERKVICCSTLQESSTPTVAA 60

Query: 61  EPKEIKAVQKEAPAKPKPPAKAPVKPLPQMMEEDVIPSLKAILEAQADVADIELSFQDDR 120
           EPKEIK V KEAPAK KPPAKAPVKPLP++M+E+VIPSLKAILEAQADV+D+ LSFQDDR
Sbjct: 61  EPKEIKTVPKEAPAKAKPPAKAPVKPLPELMDEEVIPSLKAILEAQADVSDVALSFQDDR 120

Query: 121 LDGSFSKNGVPYSFWAFFPNGLTGPKGFSLSSYGNGGSSVEPFLVDEKKVTAKLLVFWIE 180
           LDGSF KNGVPYSFWAFFPNGLTGPKGFSLSSYGNGGSSVEPFLVDEKKV+ KL+VFWIE
Sbjct: 121 LDGSFLKNGVPYSFWAFFPNGLTGPKGFSLSSYGNGGSSVEPFLVDEKKVSGKLIVFWIE 180

Query: 181 KRLAAQGIIPVWKD 194
           KRLAAQGIIPVWKD
Sbjct: 181 KRLAAQGIIPVWKD 194

[Close]
BLAST of CmoCh04G015080 vs. NCBI nr
Match: gi|659091830|ref|XP_008446754.1| (PREDICTED: uncharacterized protein LOC103489386 [Cucumis melo])

HSP 1 Score: 331.3 bits (848), Expect = 1.2e-87
Identity = 171/195 (87.69%), Postives = 182/195 (93.33%), Query Frame = 1 

Query: 1   MAMILKGGGGIGVSTATYFP-QNSKPSPVFSVHT-VHKLPAERRVICCSTLQESSTPTVS 60
           MAMILKGG G+GVSTATYFP  N KPSP+FS+H  VHKL AER+VICCSTLQESSTPTV+
Sbjct: 1   MAMILKGGRGLGVSTATYFPAHNPKPSPLFSLHMMVHKLAAERKVICCSTLQESSTPTVA 60

Query: 61  AEPKEIKAVQKEAPAKPKPPAKAPVKPLPQMMEEDVIPSLKAILEAQADVADIELSFQDD 120
           AEPKEIK V KEAPAK KPPAKA VKPLP++MEE+VIPSLKAILEAQADV DIELSFQDD
Sbjct: 61  AEPKEIKTVPKEAPAKAKPPAKAAVKPLPELMEEEVIPSLKAILEAQADVYDIELSFQDD 120

Query: 121 RLDGSFSKNGVPYSFWAFFPNGLTGPKGFSLSSYGNGGSSVEPFLVDEKKVTAKLLVFWI 180
           RLDGSF K+GVPYSFWAFFPNGLTGPKGFSLSSYGNGGSSVEPFLVDEKKV+AKL+VFWI
Sbjct: 121 RLDGSFLKDGVPYSFWAFFPNGLTGPKGFSLSSYGNGGSSVEPFLVDEKKVSAKLIVFWI 180

Query: 181 EKRLAAQGIIPVWKD 194
           EKRLAAQGIIPVWKD
Sbjct: 181 EKRLAAQGIIPVWKD 195

[Close]
BLAST of CmoCh04G015080 vs. NCBI nr
Match: gi|296083572|emb|CBI23563.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 248.4 bits (633), Expect = 9.9e-63
Identity = 121/154 (78.57%), Postives = 142/154 (92.21%), Query Frame = 1 

Query: 41  RRVICCSTLQESSTPTVSAEPKEIKAVQKEAPAKPKPPAKAPVKPLPQMMEEDVIPSLKA 100
           RR+I CS +QESSTPTV+AE KE+K  Q++ PAKPKPPAKAPVKPLPQMMEEDVIPSLK+
Sbjct: 12  RRIIACSAVQESSTPTVAAETKEVKPAQEKGPAKPKPPAKAPVKPLPQMMEEDVIPSLKS 71

Query: 101 ILEAQADVADIELSFQDDRLDGSFSKNGVPYSFWAFFPNG-LTGPKGFSLSSYGNGGSSV 160
           ILEAQ D+++IELSFQD+RL+GSF K G+PYSFWAFFPNG LTGPKGFSLSSYG+G S+V
Sbjct: 72  ILEAQDDLSEIELSFQDNRLEGSFQKKGIPYSFWAFFPNGVLTGPKGFSLSSYGSGSSTV 131

Query: 161 EPFLVDEKKVTAKLLVFWIEKRLAAQGIIPVWKD 194
           EPFL+DEK++TAK +VFW+EKRLAAQGIIPVWK+
Sbjct: 132 EPFLIDEKRITAKHVVFWVEKRLAAQGIIPVWKE 165

[Close]
BLAST of CmoCh04G015080 vs. NCBI nr
Match: gi|1009125591|ref|XP_015879692.1| (PREDICTED: uncharacterized protein LOC107415808 isoform X1 [Ziziphus jujuba])

HSP 1 Score: 246.9 bits (629), Expect = 2.9e-62
Identity = 136/215 (63.26%), Postives = 164/215 (76.28%), Query Frame = 1 

Query: 1   MAMILK---GGGGIGVST-------ATYFPQNSKPSPVFSVHTVHKLPAERRVICCSTLQ 60
           MAM+L+   GGGG+GVS+       ++YF  NSKP+ + S  ++H L   RR I C  +Q
Sbjct: 3   MAMMLRCGHGGGGVGVSSFPSSSSSSSYFTHNSKPTSLSS--SIHMLVTRRRNIACFAVQ 62

Query: 61  ESSTPTVSAEPKEIKAVQKEA-----------PAKPKPPAKAPVKPLPQMMEEDVIPSLK 120
           ESS  TV+A+ KE +A  KEA           PAKPK PAKAP KPLPQMMEEDVIPSL+
Sbjct: 63  ESSIKTVAADTKEAEAKAKEAEATAKTAPKASPAKPKAPAKAPAKPLPQMMEEDVIPSLR 122

Query: 121 AILEAQADVADIELSFQDDRLDGSFSKNGVPYSFWAFFPNG-LTGPKGFSLSSYGNGGSS 180
           +ILEAQ D++++ELSFQD+RL+GSF K G  YSFWAFFPNG LTGPKGFSLSSYG+G S+
Sbjct: 123 SILEAQQDISELELSFQDNRLEGSFLKKGNAYSFWAFFPNGVLTGPKGFSLSSYGSGAST 182

Query: 181 VEPFLVDEKKVTAKLLVFWIEKRLAAQGIIPVWKD 194
           VEPFL+DEKK+TAK +VFW+EKRLAAQGIIPVWKD
Sbjct: 183 VEPFLIDEKKITAKHVVFWVEKRLAAQGIIPVWKD 215

[Close]
BLAST of CmoCh04G015080 vs. NCBI nr
Match: gi|1009125593|ref|XP_015879693.1| (PREDICTED: uncharacterized protein LOC107415808 isoform X2 [Ziziphus jujuba])

HSP 1 Score: 240.0 bits (611), Expect = 3.5e-60
Identity = 134/212 (63.21%), Postives = 161/212 (75.94%), Query Frame = 1 

Query: 1   MAMILK---GGGGIGVST-------ATYFPQNSKPSPVFSVHTVHKLPAERRVICCSTLQ 60
           MAM+L+   GGGG+GVS+       ++YF  NSKP+ + S  ++H L   RR I C  +Q
Sbjct: 3   MAMMLRCGHGGGGVGVSSFPSSSSSSSYFTHNSKPTSLSS--SIHMLVTRRRNIACFAVQ 62

Query: 61  ESSTPT----VSAEPKEIKAVQKEAP----AKPKPPAKAPVKPLPQMMEEDVIPSLKAIL 120
           ESS  T      A+ KE +A  K AP    AKPK PAKAP KPLPQMMEEDVIPSL++IL
Sbjct: 63  ESSIKTDTKEAEAKAKEAEATAKTAPKASPAKPKAPAKAPAKPLPQMMEEDVIPSLRSIL 122

Query: 121 EAQADVADIELSFQDDRLDGSFSKNGVPYSFWAFFPNG-LTGPKGFSLSSYGNGGSSVEP 180
           EAQ D++++ELSFQD+RL+GSF K G  YSFWAFFPNG LTGPKGFSLSSYG+G S+VEP
Sbjct: 123 EAQQDISELELSFQDNRLEGSFLKKGNAYSFWAFFPNGVLTGPKGFSLSSYGSGASTVEP 182

Query: 181 FLVDEKKVTAKLLVFWIEKRLAAQGIIPVWKD 194
           FL+DEKK+TAK +VFW+EKRLAAQGIIPVWKD
Sbjct: 183 FLIDEKKITAKHVVFWVEKRLAAQGIIPVWKD 212

The following BLAST results are available for this feature:
BLAST of CmoCh04G015080 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh04G015080 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KUS0_CUCSA1.1e-8987.63Uncharacterized protein OS=Cucumis sativus GN=Csa_5G614630 PE=4 SV=1[more]
F6H8E9_VITVI4.0e-6366.50Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s2377g00010 PE=4 SV=... [more]
A5ATF4_VITVI7.9e-5960.47Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_015578 PE=4 SV=1[more]
A0A067E764_CITSI1.5e-5762.81Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029104mg PE=4 SV=1[more]
M5WEP3_PRUPE1.5e-5772.39Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa021078mg PE=4 S... [more]
BLAST of CmoCh04G015080 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G04039.31.4e-2240.61 unknown protein[more]
BLAST of CmoCh04G015080 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449434508|ref|XP_004135038.1|1.6e-8987.63PREDICTED: uncharacterized protein LOC101205552 [Cucumis sativus][more]
gi|659091830|ref|XP_008446754.1|1.2e-8787.69PREDICTED: uncharacterized protein LOC103489386 [Cucumis melo][more]
gi|296083572|emb|CBI23563.3|9.9e-6378.57unnamed protein product [Vitis vinifera][more]
gi|1009125591|ref|XP_015879692.1|2.9e-6263.26PREDICTED: uncharacterized protein LOC107415808 isoform X1 [Ziziphus jujuba][more]
gi|1009125593|ref|XP_015879693.1|3.5e-6063.21PREDICTED: uncharacterized protein LOC107415808 isoform X2 [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR021374DUF2996
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015979 photosynthesis
biological_process GO:0008150 biological_process
cellular_component GO:0009507 chloroplast
cellular_component GO:0009579 thylakoid
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G015080.1CmoCh04G015080.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021374Protein of unknown function DUF2996PFAMPF11210DUF2996coord: 84..186
score: 2.7
NoneNo IPR availablePANTHERPTHR36341FAMILY NOT NAMEDcoord: 40..193
score: 7.6
NoneNo IPR availablePANTHERPTHR36341:SF2SUBFAMILY NOT NAMEDcoord: 40..193
score: 7.6

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh04G015080Cucsa.282620Cucumber (Gy14) v1cgycmoB0793
CmoCh04G015080CmaCh04G014370Cucurbita maxima (Rimu)cmacmoB728
CmoCh04G015080Cla020487Watermelon (97103) v1cmowmB693
CmoCh04G015080Csa5G614630Cucumber (Chinese Long) v2cmocuB738
CmoCh04G015080MELO3C012348Melon (DHL92) v3.5.1cmomeB631
CmoCh04G015080ClCG05G021810Watermelon (Charleston Gray)cmowcgB654
CmoCh04G015080CSPI05G26320Wild cucumber (PI 183967)cmocpiB745
CmoCh04G015080Lsi04G001530Bottle gourd (USVL1VR-Ls)cmolsiB660
CmoCh04G015080Cp4.1LG01g14350Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G015080MELO3C012348.2Melon (DHL92) v3.6.1cmomedB720
CmoCh04G015080CsaV3_5G035360Cucumber (Chinese Long) v3cmocucB0874
CmoCh04G015080Cla97C05G103520Watermelon (97103) v2cmowmbB729
CmoCh04G015080Bhi07G000633Wax gourdcmowgoB0904
CmoCh04G015080CsGy5G025780Cucumber (Gy14) v2cgybcmoB650
CmoCh04G015080Carg01900Silver-seed gourdcarcmoB1138
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G015080Cucurbita moschata (Rifu)cmocmoB336
CmoCh04G015080Cucurbita moschata (Rifu)cmocmoB468
CmoCh04G015080Cucurbita maxima (Rimu)cmacmoB420
CmoCh04G015080Cucurbita maxima (Rimu)cmacmoB739
CmoCh04G015080Watermelon (Charleston Gray)cmowcgB681
CmoCh04G015080Watermelon (97103) v1cmowmB662
CmoCh04G015080Cucurbita pepo (Zucchini)cmocpeB651
CmoCh04G015080Cucurbita pepo (Zucchini)cmocpeB687
CmoCh04G015080Bottle gourd (USVL1VR-Ls)cmolsiB700
CmoCh04G015080Silver-seed gourdcarcmoB1412