Carg01900 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg01900
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Glyceraldehyde-3-phosphate dehydrogenase A
Location	Cucurbita_argyrosperma_scaffold_003 : 1033137 .. 1036852 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTTCCGATTAGCGCGAGTGGATCACAAAAATCCGCGCGCTTCGTCTTTGTAGCGCAGAATGAGAAGCATTTCCTTCGCCGTTGTTGTCAACTACCTTACACCAACGATTCTCATCTCACAGCTATGAACCTCTAATCTTCACTATCAAACTCTTCAAAACTGTACTCAAAGCTCTTGCCCTGTGATCTTCTCTGCGAGTTTAATCCCTCTCCTCGGTAGCGTTTTAGATGGCAATGATTCTCAAAGGAGGAGGCGGAATTGGAGTTTCAACTGCTACTTACTTTCCTCAGAATTCCAAACCTTCCCCAGTATTCTCGGTTCACACGGTATGTTTATTCGTTTTGTTCTTATTCCGATTCTGATTTCATTTCTGGTTCTTATTCTGTTATTCTTGGTTTGATTCTGCTATGAATAGACGTACAATTTATTCCTGACTTGATTGCGCTTTAACTGTTTTACCTTTTTCAAGTTTCGTACTCTCTTTTATGGCGTAGTTCTTAGAAACTCGTAGTCGATTTTACTTGGTTATATTCTTCTGACTTGGATGTGAGGTGCTCGAGTAAAAGGAGAGGAAAAGAGGAAAACGAAGCTTAAAATTCTCCCTAGAATCAACGTGTTTGTTAGTTTTGGTTCCAAAACTACGGTATCCACCGATTGATTAGCAACATGATTTGGAATTGTAATCCGAAAATAAACCAGGTCCCACTCCAGAAGAGAAAAAATACTATTAGGACTTTGAAATTATTTGTACTTAAAAACTATTTCAGCATTTGAATTTGTTATATCATCATTGAACACTAAAGGTTAAGTTCCAATAAATTTAGTTTTTAATTCATGTTATTATTTCTTTTTACATGTAGGCTTGGATATTGGCACGAAGTGAAACAAATAGTAACCAATAGTAGTGGTAGATGAAATGACTTTGTAAGGGTTCGAAATATAGGATCTATTACCCTAATATCATCATGATTAATCATAATTGAACCCAAAAATTAAAGTTGGTGAATTCTTAACAGTGTTCTTTTCTTTTCTTTTCTTTCTGTTCTTTTTTTTTTTTTTTTTGTCTTCTCTCCTGTTTCCATTGGGGGCAGAGTCATGAACAAGATAGAGATAGATCTGGGGAGGGAAGATTCAGTTAGTTGAGAAAAAATGTATGAGTTCAAAATGGATCCATAAGATAAGAGGAAGGTATCCATACCTTCAAATCACTCCACTAGATGGAAAGATGATGGTAATATGATGCTTTAGGTAGCGTTCATATGTACATAGATTAAGGATATTACATTATAAATATAGAAGAAGAGATTCTGTAACAGCCCAAGCTCACCGCTAGCCTATATTGTCCTCTTTGGGCTTTCCCTTTTGGATTTCCCCTCAAGACTTTTAAAACGCGTCTGTTAGGGAGAGGTTTCCACACCCTTATAAGGGATGTTTCGTTCCCCTCTAATTGACTTGGGATCTCAGAATCCACCCCACTTGGGGGCCCAGCGTCCTCGCTGGCACACCGCTCGGCGTCTGGCTCTGATACCATTTGTCGCAAACTCACCGCAAATAGATATTGTCCTCTTTGGGTTTTCCCTTTGTTCTTCCCCTCAAAGTTTTAAAACACATTTGCTAGGGAGAGGTTTCCACACCCTTATAAAGAGTGTTTTGTTTCCCTCTTCAATCAACGTGGGATCTCACAAATTCAGACCTAAGATATGAGACACTTATGCCTAAGTTCCAAACCACCTTGCTCGAGTCGGTGATGTGGTAGGTGGGTAGTGGCAAAGAACGTCAGAATGGTTGAGCCATAGTTTCTGCCTTAGGTTTGTTTCTAGAAATAAGTTTTTTCCTACATTCACGATTTTGTTGCATGCCTGCCATACCAGAAAGAACACATGAGTTCAAGCCAGTACTTTTTAGTATACAAAAATCTACTAGAGCAGTGGAGTGATAGTATCACCTAGCGTTTATGGTTATAGTTGGGATCTGTCATCTTTATTCATCTTTACAGATAGCATCCTGCTCTTCACTTCATAAATTTAGTTTACCAATAAGAGTGGATATAACTTAAGTTGACTTGTGCAGGTACATAAGCTTCCAGCTGAACGCAGAGTCATATGCTGCTCTACCTTGCAGGAATCATCTACCCCAACAGGTTAGTTGCTGGCAAGTCTTTCATAGTACACCACTGAAAGATTGACAGAGTTCCCCTGAGTGGCATAGATACTGATAGACATGACATCGACACAATGGCACGTCATTTTAAAAAAGTCTAGAACATGGATATGGAAAAAAACGTGTTTATTAATATACATCATTTTATACGAAAAGTAAATTTAATGTCAATAAGTTTTTTTTTTTCATTTGTATGCTAAAAAAAATGAGTTGAATGTATTTCACGCTCAAAACTTGTTGTTTTTGTCCTCTTTTATTAACAAGTGTTTAATACGTGTCTAACAAATTTTCGACCTGTATTGAACTTGTCTATTGCTAACAAGTATACAACATGTGTCGAACAAGTATTGGAGTGTCCAAATGTCTGACATGTGTTGGATACGGACACGCTAGCCAAACTAAAATGTCTATGCTTCTTAGGTGACCTTTCTTCTGTTCCACATGAAAAGGGTCATCCTCGGGTTTATTTGTTTCTTTCTGCTGCGTTTATTAATACTCAATTTATGGCATCTGCTAAAGTAGAAGTCTTTTCTATCAGTTTCTGCGGAGCCAAAGGAGATAAAGGCAGTTCAGAAGGAAGCTCCAGCAAAGCCCAAACCGCCAGCAAAAGCGCCAGTGAAGCCACTGCCTCAAATGATGGAGGAAGATGTCATACCTTCACTCAAAGCGATACTTGAAGCACAAGCCGATGTTGCTGATATCGAGTTATCCTTCCAAGATGACAGAGTTAGTTTCTTCCATCCCAATTAACGTTCACTAATAAACTCTTAGCTTCAGCTCATTGAATTTGGGTTGACAATGGCAGTTGGATGGTTCATTCTCGAAAAATGGAGTTCCCTACTCATTTTGGGCTTTCTTCCCCAATGGCCTCACAGGTACTTAATTCTTCTCAGAGAACGTAACTATTTTACCATTGTCATCACCCTTTAGCTTCTGGTTTTCACTGCCTTTCGTTAAATACAAAAATGGTGAACGTAACAAATTAGGACAATATCTACTAGTGATGAACATATCAAAAGCTATCCTTCAAGTAGAAATCTATTACATTGCTAGATGAAAGTTGAGATTTAGAATAGCGTAGCGGTGAGCTTGGATAAAAATTAGCATGCTAGCATCGCTACACCTATCTAGGTCTAAATTTCCATCTATAGTTTTAACGGATTTCTACTACAAAGGATAGTTTAGAAATATTGCAACTTATGAGTCAAAAAAAGAGAAAAAAAACATCTAAACTCAATGTCTAATCTTGTTGGAACAGGTCCAAAAGGGTTTTCACTATCCTCATATGGCAATGGAGGAAGCTCTGTTGAGCCATTTCTGGTGGATGAGAAGAAAGTAACAGCAAAGCTTTTAGTTTTTTGGATTGAGAAACGTTTGGCTGCACAAGGAATTATTCCTGTCTGGAAAGACTAATCAGCAAAATTATTATTCTTTTCCTTTTTTTTTTCTTGGTGGGGGGCTTCTTTGCAAATGATGTATAGCATAATTCTCCATTCTATTGCATTGCTCCAACAATGTCAACTGTTCCTATGAAATGTATCAACTTTTTAGTCCA

mRNA sequence

TGTTCCGATTAGCGCGAGTGGATCACAAAAATCCGCGCGCTTCGTCTTTGTAGCGCAGAATGAGAAGCATTTCCTTCGCCGTTGTTGTCAACTACCTTACACCAACGATTCTCATCTCACAGCTATGAACCTCTAATCTTCACTATCAAACTCTTCAAAACTGTACTCAAAGCTCTTGCCCTGTGATCTTCTCTGCGAGTTTAATCCCTCTCCTCGGTAGCGTTTTAGATGGCAATGATTCTCAAAGGAGGAGGCGGAATTGGAGTTTCAACTGCTACTTACTTTCCTCAGAATTCCAAACCTTCCCCAGTATTCTCGGTTCACACGGTACATAAGCTTCCAGCTGAACGCAGAGTCATATGCTGCTCTACCTTGCAGGAATCATCTACCCCAACAGTTTCTGCGGAGCCAAAGGAGATAAAGGCAGTTCAGAAGGAAGCTCCAGCAAAGCCCAAACCGCCAGCAAAAGCGCCAGTGAAGCCACTGCCTCAAATGATGGAGGAAGATGTCATACCTTCACTCAAAGCGATACTTGAAGCACAAGCCGATGTTGCTGATATCGAGTTATCCTTCCAAGATGACAGATTGGATGGTTCATTCTCGAAAAATGGAGTTCCCTACTCATTTTGGGCTTTCTTCCCCAATGGCCTCACAGGTCCAAAAGGGTTTTCACTATCCTCATATGGCAATGGAGGAAGCTCTGTTGAGCCATTTCTGGTGGATGAGAAGAAAGTAACAGCAAAGCTTTTAGTTTTTTGGATTGAGAAACGTTTGGCTGCACAAGGAATTATTCCTGTCTGGAAAGACTAATCAGCAAAATTATTATTCTTTTCCTTTTTTTTTTCTTGGTGGGGGGCTTCTTTGCAAATGATGTATAGCATAATTCTCCATTCTATTGCATTGCTCCAACAATGTCAACTGTTCCTATGAAATGTATCAACTTTTTAGTCCA

Coding sequence (CDS)

ATGGCAATGATTCTCAAAGGAGGAGGCGGAATTGGAGTTTCAACTGCTACTTACTTTCCTCAGAATTCCAAACCTTCCCCAGTATTCTCGGTTCACACGGTACATAAGCTTCCAGCTGAACGCAGAGTCATATGCTGCTCTACCTTGCAGGAATCATCTACCCCAACAGTTTCTGCGGAGCCAAAGGAGATAAAGGCAGTTCAGAAGGAAGCTCCAGCAAAGCCCAAACCGCCAGCAAAAGCGCCAGTGAAGCCACTGCCTCAAATGATGGAGGAAGATGTCATACCTTCACTCAAAGCGATACTTGAAGCACAAGCCGATGTTGCTGATATCGAGTTATCCTTCCAAGATGACAGATTGGATGGTTCATTCTCGAAAAATGGAGTTCCCTACTCATTTTGGGCTTTCTTCCCCAATGGCCTCACAGGTCCAAAAGGGTTTTCACTATCCTCATATGGCAATGGAGGAAGCTCTGTTGAGCCATTTCTGGTGGATGAGAAGAAAGTAACAGCAAAGCTTTTAGTTTTTTGGATTGAGAAACGTTTGGCTGCACAAGGAATTATTCCTGTCTGGAAAGACTAA

Protein sequence

MAMILKGGGGIGVSTATYFPQNSKPSPVFSVHTVHKLPAERRVICCSTLQESSTPTVSAEPKEIKAVQKEAPAKPKPPAKAPVKPLPQMMEEDVIPSLKAILEAQADVADIELSFQDDRLDGSFSKNGVPYSFWAFFPNGLTGPKGFSLSSYGNGGSSVEPFLVDEKKVTAKLLVFWIEKRLAAQGIIPVWKD

Homology

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BLAST of Carg01900 vs. NCBI nr
Match: XP_022956513.1 (uncharacterized protein LOC111458230 [Cucurbita moschata] >XP_023539763.1 uncharacterized protein LOC111800345 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 380.9 bits (977), Expect = 2.5e-102
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 1   MAMILKGGGGIGVSTATYFPQNSKPSPVFSVHTVHKLPAERRVICCSTLQESSTPTVSAE 60
           MAMILKGGGGIGVSTATYFPQNSKPSPVFSVHTVHKLPAERRVICCSTLQESSTPTVSAE
Sbjct: 1   MAMILKGGGGIGVSTATYFPQNSKPSPVFSVHTVHKLPAERRVICCSTLQESSTPTVSAE 60

Query: 61  PKEIKAVQKEAPAKPKPPAKAPVKPLPQMMEEDVIPSLKAILEAQADVADIELSFQDDRL 120
           PKEIKAVQKEAPAKPKPPAKAPVKPLPQMMEEDVIPSLKAILEAQADVADIELSFQDDRL
Sbjct: 61  PKEIKAVQKEAPAKPKPPAKAPVKPLPQMMEEDVIPSLKAILEAQADVADIELSFQDDRL 120

Query: 121 DGSFSKNGVPYSFWAFFPNGLTGPKGFSLSSYGNGGSSVEPFLVDEKKVTAKLLVFWIEK 180
           DGSFSKNGVPYSFWAFFPNGLTGPKGFSLSSYGNGGSSVEPFLVDEKKVTAKLLVFWIEK
Sbjct: 121 DGSFSKNGVPYSFWAFFPNGLTGPKGFSLSSYGNGGSSVEPFLVDEKKVTAKLLVFWIEK 180

Query: 181 RLAAQGIIPVWKD 194
           RLAAQGIIPVWKD
Sbjct: 181 RLAAQGIIPVWKD 193

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BLAST of Carg01900 vs. NCBI nr
Match: XP_022986445.1 (uncharacterized protein LOC111484155 [Cucurbita maxima] >XP_022986526.1 uncharacterized protein LOC111484155 [Cucurbita maxima])

HSP 1 Score: 377.1 bits (967), Expect = 3.6e-101
Identity = 192/193 (99.48%), Postives = 192/193 (99.48%), Query Frame = 0


Query: 1   MAMILKGGGGIGVSTATYFPQNSKPSPVFSVHTVHKLPAERRVICCSTLQESSTPTVSAE 60
           MAMILKGGGGIGVSTATYFPQNSKPSPVFSVHTVHKL AERRVICCSTLQESSTPTVSAE
Sbjct: 1   MAMILKGGGGIGVSTATYFPQNSKPSPVFSVHTVHKLLAERRVICCSTLQESSTPTVSAE 60

Query: 61  PKEIKAVQKEAPAKPKPPAKAPVKPLPQMMEEDVIPSLKAILEAQADVADIELSFQDDRL 120
           PKEIKAVQKEAPAKPKPPAKAPVKPLPQMMEEDVIPSLKAILEAQADVADIELSFQDDRL
Sbjct: 61  PKEIKAVQKEAPAKPKPPAKAPVKPLPQMMEEDVIPSLKAILEAQADVADIELSFQDDRL 120

Query: 121 DGSFSKNGVPYSFWAFFPNGLTGPKGFSLSSYGNGGSSVEPFLVDEKKVTAKLLVFWIEK 180
           DGSFSKNGVPYSFWAFFPNGLTGPKGFSLSSYGNGGSSVEPFLVDEKKVTAKLLVFWIEK
Sbjct: 121 DGSFSKNGVPYSFWAFFPNGLTGPKGFSLSSYGNGGSSVEPFLVDEKKVTAKLLVFWIEK 180

Query: 181 RLAAQGIIPVWKD 194
           RLAAQGIIPVWKD
Sbjct: 181 RLAAQGIIPVWKD 193

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BLAST of Carg01900 vs. NCBI nr
Match: XP_022150480.1 (uncharacterized protein LOC111018617 [Momordica charantia])

HSP 1 Score: 337.0 bits (863), Expect = 4.1e-89
Identity = 169/193 (87.56%), Postives = 182/193 (94.30%), Query Frame = 0


Query: 1   MAMILKGGGGIGVSTATYFPQNSKPSPVFSVHTVHKLPAERRVICCSTLQESSTPTVSAE 60
           MAMILKGGGGIGV TAT F Q SKPSP+FS+HT++KL AER+VICCSTLQESSTPTV+AE
Sbjct: 1   MAMILKGGGGIGVPTATCFSQISKPSPIFSIHTIYKLAAERKVICCSTLQESSTPTVAAE 60

Query: 61  PKEIKAVQKEAPAKPKPPAKAPVKPLPQMMEEDVIPSLKAILEAQADVADIELSFQDDRL 120
           PKE+K V+KEAPAK KPPAKAPVK LP++MEEDVIPSLKAILEAQADV+DIELSFQDDRL
Sbjct: 61  PKEMKVVEKEAPAKTKPPAKAPVKALPELMEEDVIPSLKAILEAQADVSDIELSFQDDRL 120

Query: 121 DGSFSKNGVPYSFWAFFPNGLTGPKGFSLSSYGNGGSSVEPFLVDEKKVTAKLLVFWIEK 180
           DGSF KNGVPYSFWAFFPNGLTGPKGFSLSSYG GGSSVEPFLVDEKK+TAK +VFWIEK
Sbjct: 121 DGSFLKNGVPYSFWAFFPNGLTGPKGFSLSSYGYGGSSVEPFLVDEKKITAKHVVFWIEK 180

Query: 181 RLAAQGIIPVWKD 194
           RLAAQGIIPVWKD
Sbjct: 181 RLAAQGIIPVWKD 193

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BLAST of Carg01900 vs. NCBI nr
Match: XP_008446754.1 (PREDICTED: uncharacterized protein LOC103489386 [Cucumis melo])

HSP 1 Score: 331.3 bits (848), Expect = 2.3e-87
Identity = 171/195 (87.69%), Postives = 182/195 (93.33%), Query Frame = 0


Query: 1   MAMILKGGGGIGVSTATYFP-QNSKPSPVFSVH-TVHKLPAERRVICCSTLQESSTPTVS 60
           MAMILKGG G+GVSTATYFP  N KPSP+FS+H  VHKL AER+VICCSTLQESSTPTV+
Sbjct: 1   MAMILKGGRGLGVSTATYFPAHNPKPSPLFSLHMMVHKLAAERKVICCSTLQESSTPTVA 60

Query: 61  AEPKEIKAVQKEAPAKPKPPAKAPVKPLPQMMEEDVIPSLKAILEAQADVADIELSFQDD 120
           AEPKEIK V KEAPAK KPPAKA VKPLP++MEE+VIPSLKAILEAQADV DIELSFQDD
Sbjct: 61  AEPKEIKTVPKEAPAKAKPPAKAAVKPLPELMEEEVIPSLKAILEAQADVYDIELSFQDD 120

Query: 121 RLDGSFSKNGVPYSFWAFFPNGLTGPKGFSLSSYGNGGSSVEPFLVDEKKVTAKLLVFWI 180
           RLDGSF K+GVPYSFWAFFPNGLTGPKGFSLSSYGNGGSSVEPFLVDEKKV+AKL+VFWI
Sbjct: 121 RLDGSFLKDGVPYSFWAFFPNGLTGPKGFSLSSYGNGGSSVEPFLVDEKKVSAKLIVFWI 180

Query: 181 EKRLAAQGIIPVWKD 194
           EKRLAAQGIIPVWKD
Sbjct: 181 EKRLAAQGIIPVWKD 195

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BLAST of Carg01900 vs. NCBI nr
Match: XP_004135038.1 (PREDICTED: uncharacterized protein LOC101205552 [Cucumis sativus] >KGN52187.1 hypothetical protein Csa_5G614630 [Cucumis sativus])

HSP 1 Score: 317.8 bits (813), Expect = 2.6e-83
Identity = 162/194 (83.51%), Postives = 174/194 (89.69%), Query Frame = 0


Query: 1   MAMILKGGGGIGVSTATYFPQNSKPSPVFSVH-TVHKLPAERRVICCSTLQESSTPTVSA 60
           MAMILKGG GIGVSTATYFP N KPSP+FS+H  VHKL AER+VICCSTLQESSTPTV+A
Sbjct: 1   MAMILKGGRGIGVSTATYFPHNPKPSPLFSLHMMVHKLAAERKVICCSTLQESSTPTVAA 60

Query: 61  EPKEIKAVQKEAPAKPKPPAKAPVKPLPQMMEEDVIPSLKAILEAQADVADIELSFQDDR 120
           EPKEIK V KEAPAK         KPLP++M+E+VIPSLKAILEAQADV+D+ LSFQDDR
Sbjct: 61  EPKEIKTVPKEAPAKAXXXXXXXXKPLPELMDEEVIPSLKAILEAQADVSDVALSFQDDR 120

Query: 121 LDGSFSKNGVPYSFWAFFPNGLTGPKGFSLSSYGNGGSSVEPFLVDEKKVTAKLLVFWIE 180
           LDGSF KNGVPYSFWAFFPNGLTGPKGFSLSSYGNGGSSVEPFLVDEKKV+ KL+VFWIE
Sbjct: 121 LDGSFLKNGVPYSFWAFFPNGLTGPKGFSLSSYGNGGSSVEPFLVDEKKVSGKLIVFWIE 180

Query: 181 KRLAAQGIIPVWKD 194
           KRLAAQGIIPVWKD
Sbjct: 181 KRLAAQGIIPVWKD 194

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BLAST of Carg01900 vs. TAIR10
Match: AT2G04039.3 (unknown protein)

HSP 1 Score: 87.4 bits (215), Expect = 1.0e-17
Identity = 52/106 (49.06%), Postives = 62/106 (58.49%), Query Frame = 0


Query: 86  LPQMMEEDVIPSLKAILEAQADVADIELSFQDDRLDGSFSKNGVPYSFWAFFPNG-LTG- 145
           L QMMEEDVIP L+AILE+Q D++DI+LSFQDD+L+G F K  +PYSFWAFFP G LTG 
Sbjct: 91  LRQMMEEDVIPPLQAILESQDDISDIDLSFQDDKLEGFFLKKSIPYSFWAFFPTGNLTGE 150

Query: 146 PKGFSLSSYGNGGSSVEPFLVDEKKVTAKLLVFWIEKRLAAQGIIP 190
            K F     G   +    FL          L F     L  +G  P
Sbjct: 151 QKDFQFPHTGQVRAPWNHFLSTRGNQLRTTLCFGSRSVLLHKGSSP 196

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BLAST of Carg01900 vs. TrEMBL
Match: tr|A0A1S3BGH0|A0A1S3BGH0_CUCME (uncharacterized protein LOC103489386 OS=Cucumis melo OX=3656 GN=LOC103489386 PE=4 SV=1)

HSP 1 Score: 331.3 bits (848), Expect = 1.5e-87
Identity = 171/195 (87.69%), Postives = 182/195 (93.33%), Query Frame = 0


Query: 1   MAMILKGGGGIGVSTATYFP-QNSKPSPVFSVH-TVHKLPAERRVICCSTLQESSTPTVS 60
           MAMILKGG G+GVSTATYFP  N KPSP+FS+H  VHKL AER+VICCSTLQESSTPTV+
Sbjct: 1   MAMILKGGRGLGVSTATYFPAHNPKPSPLFSLHMMVHKLAAERKVICCSTLQESSTPTVA 60

Query: 61  AEPKEIKAVQKEAPAKPKPPAKAPVKPLPQMMEEDVIPSLKAILEAQADVADIELSFQDD 120
           AEPKEIK V KEAPAK KPPAKA VKPLP++MEE+VIPSLKAILEAQADV DIELSFQDD
Sbjct: 61  AEPKEIKTVPKEAPAKAKPPAKAAVKPLPELMEEEVIPSLKAILEAQADVYDIELSFQDD 120

Query: 121 RLDGSFSKNGVPYSFWAFFPNGLTGPKGFSLSSYGNGGSSVEPFLVDEKKVTAKLLVFWI 180
           RLDGSF K+GVPYSFWAFFPNGLTGPKGFSLSSYGNGGSSVEPFLVDEKKV+AKL+VFWI
Sbjct: 121 RLDGSFLKDGVPYSFWAFFPNGLTGPKGFSLSSYGNGGSSVEPFLVDEKKVSAKLIVFWI 180

Query: 181 EKRLAAQGIIPVWKD 194
           EKRLAAQGIIPVWKD
Sbjct: 181 EKRLAAQGIIPVWKD 195

[Close]

BLAST of Carg01900 vs. TrEMBL
Match: tr|A0A0A0KUS0|A0A0A0KUS0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G614630 PE=4 SV=1)

HSP 1 Score: 317.8 bits (813), Expect = 1.7e-83
Identity = 162/194 (83.51%), Postives = 174/194 (89.69%), Query Frame = 0


Query: 1   MAMILKGGGGIGVSTATYFPQNSKPSPVFSVH-TVHKLPAERRVICCSTLQESSTPTVSA 60
           MAMILKGG GIGVSTATYFP N KPSP+FS+H  VHKL AER+VICCSTLQESSTPTV+A
Sbjct: 1   MAMILKGGRGIGVSTATYFPHNPKPSPLFSLHMMVHKLAAERKVICCSTLQESSTPTVAA 60

Query: 61  EPKEIKAVQKEAPAKPKPPAKAPVKPLPQMMEEDVIPSLKAILEAQADVADIELSFQDDR 120
           EPKEIK V KEAPAK         KPLP++M+E+VIPSLKAILEAQADV+D+ LSFQDDR
Sbjct: 61  EPKEIKTVPKEAPAKAXXXXXXXXKPLPELMDEEVIPSLKAILEAQADVSDVALSFQDDR 120

Query: 121 LDGSFSKNGVPYSFWAFFPNGLTGPKGFSLSSYGNGGSSVEPFLVDEKKVTAKLLVFWIE 180
           LDGSF KNGVPYSFWAFFPNGLTGPKGFSLSSYGNGGSSVEPFLVDEKKV+ KL+VFWIE
Sbjct: 121 LDGSFLKNGVPYSFWAFFPNGLTGPKGFSLSSYGNGGSSVEPFLVDEKKVSGKLIVFWIE 180

Query: 181 KRLAAQGIIPVWKD 194
           KRLAAQGIIPVWKD
Sbjct: 181 KRLAAQGIIPVWKD 194

[Close]

BLAST of Carg01900 vs. TrEMBL
Match: tr|A0A251P1L7|A0A251P1L7_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G011000 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 7.2e-58
Identity = 121/172 (70.35%), Postives = 140/172 (81.40%), Query Frame = 0


Query: 23  SKPSPVFSVHTVHKLPAERRVICCSTLQESSTPTVSAEPKEIKAVQKEAPAKPKPPAKAP 82
           SKP    + HTV KL   +R I CS L ESST TV+A+ KE+K  QK APAKPK  AKAP
Sbjct: 62  SKPKFDNASHTVSKLVTSQRNIVCSALPESSTSTVAADTKEVKTAQKAAPAKPKVAAKAP 121

Query: 83  VKPLPQMMEEDVIPSLKAILEAQADVADIELSFQDDRLDGSFSKNGVPYSFWAFFPNG-L 142
           VKPLPQMMEEDVIP LKAILE Q +++DIELSFQ+++L+G F K  + YSFWAFFP+G L
Sbjct: 122 VKPLPQMMEEDVIPQLKAILETQDELSDIELSFQENKLEGFFLKKDIRYSFWAFFPSGVL 181

Query: 143 TGPKGFSLSSYGNGGSSVEPFLVDEKKVTAKLLVFWIEKRLAAQGIIPVWKD 194
           TGPKGFSLSSYG G S+VEPFL+DEKK+TAK +VFW+EKRLAAQGIIPVWKD
Sbjct: 182 TGPKGFSLSSYGQGASTVEPFLIDEKKITAKHIVFWVEKRLAAQGIIPVWKD 233

[Close]

BLAST of Carg01900 vs. TrEMBL
Match: tr|A0A251P1T6|A0A251P1T6_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G011000 PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 1.6e-57
Identity = 119/165 (72.12%), Postives = 137/165 (83.03%), Query Frame = 0


Query: 30  SVHTVHKLPAERRVICCSTLQESSTPTVSAEPKEIKAVQKEAPAKPKPPAKAPVKPLPQM 89
           S HTV KL   +R I CS L ESST TV+A+ KE+K  QK APAKPK  AKAPVKPLPQM
Sbjct: 70  SQHTVSKLVTSQRNIVCSALPESSTSTVAADTKEVKTAQKAAPAKPKVAAKAPVKPLPQM 129

Query: 90  MEEDVIPSLKAILEAQADVADIELSFQDDRLDGSFSKNGVPYSFWAFFPNG-LTGPKGFS 149
           MEEDVIP LKAILE Q +++DIELSFQ+++L+G F K  + YSFWAFFP+G LTGPKGFS
Sbjct: 130 MEEDVIPQLKAILETQDELSDIELSFQENKLEGFFLKKDIRYSFWAFFPSGVLTGPKGFS 189

Query: 150 LSSYGNGGSSVEPFLVDEKKVTAKLLVFWIEKRLAAQGIIPVWKD 194
           LSSYG G S+VEPFL+DEKK+TAK +VFW+EKRLAAQGIIPVWKD
Sbjct: 190 LSSYGQGASTVEPFLIDEKKITAKHIVFWVEKRLAAQGIIPVWKD 234

[Close]

BLAST of Carg01900 vs. TrEMBL
Match: tr|M5WEP3|M5WEP3_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa021078mg PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 2.7e-57
Identity = 118/163 (72.39%), Postives = 136/163 (83.44%), Query Frame = 0


Query: 32  HTVHKLPAERRVICCSTLQESSTPTVSAEPKEIKAVQKEAPAKPKPPAKAPVKPLPQMME 91
           HTV KL   +R I CS L ESST TV+A+ KE+K  QK APAKPK  AKAPVKPLPQMME
Sbjct: 2   HTVSKLVTSQRNIVCSALPESSTSTVAADTKEVKTAQKAAPAKPKVAAKAPVKPLPQMME 61

Query: 92  EDVIPSLKAILEAQADVADIELSFQDDRLDGSFSKNGVPYSFWAFFPNG-LTGPKGFSLS 151
           EDVIP LKAILE Q +++DIELSFQ+++L+G F K  + YSFWAFFP+G LTGPKGFSLS
Sbjct: 62  EDVIPQLKAILETQDELSDIELSFQENKLEGFFLKKDIRYSFWAFFPSGVLTGPKGFSLS 121

Query: 152 SYGNGGSSVEPFLVDEKKVTAKLLVFWIEKRLAAQGIIPVWKD 194
           SYG G S+VEPFL+DEKK+TAK +VFW+EKRLAAQGIIPVWKD
Sbjct: 122 SYGQGASTVEPFLIDEKKITAKHIVFWVEKRLAAQGIIPVWKD 164

The following BLAST results are available for this feature:

BLAST of Carg01900 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022956513.1	2.5e-102	100.00	uncharacterized protein LOC111458230 [Cucurbita moschata] >XP_023539763.1 unchar...	[more]
XP_022986445.1	3.6e-101	99.48	uncharacterized protein LOC111484155 [Cucurbita maxima] >XP_022986526.1 uncharac...	[more]
XP_022150480.1	4.1e-89	87.56	uncharacterized protein LOC111018617 [Momordica charantia]	[more]
XP_008446754.1	2.3e-87	87.69	PREDICTED: uncharacterized protein LOC103489386 [Cucumis melo]	[more]
XP_004135038.1	2.6e-83	83.51	PREDICTED: uncharacterized protein LOC101205552 [Cucumis sativus] >KGN52187.1 hy...	[more]

BLAST of Carg01900 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G04039.3	1.0e-17	49.06	unknown protein	[more]

BLAST of Carg01900 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg01900 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BGH0\|A0A1S3BGH0_CUCME	1.5e-87	87.69	uncharacterized protein LOC103489386 OS=Cucumis melo OX=3656 GN=LOC103489386 PE=...	[more]
tr\|A0A0A0KUS0\|A0A0A0KUS0_CUCSA	1.7e-83	83.51	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G614630 PE=4 SV=1	[more]
tr\|A0A251P1L7\|A0A251P1L7_PRUPE	7.2e-58	70.35	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G011000 PE=4 SV=1	[more]
tr\|A0A251P1T6\|A0A251P1T6_PRUPE	1.6e-57	72.12	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G011000 PE=4 SV=1	[more]
tr\|M5WEP3\|M5WEP3_PRUPE	2.7e-57	72.39	Uncharacterized protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa021078m...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021374	DUF2996

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg01900-RA	Carg01900-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021374	Protein of unknown function DUF2996	PFAM	PF11210	DUF2996	coord: 84..186 e-value: 2.8E-13 score: 50.3
IPR021374	Protein of unknown function DUF2996	PANTHER	PTHR36341	FAMILY NOT NAMED	coord: 33..193
None	No IPR available	PANTHER	PTHR36341:SF2	SUBFAMILY NOT NAMED	coord: 33..193

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg01900	Cla020487	Watermelon (97103) v1	carwmB0842
Carg01900	Csa5G614630	Cucumber (Chinese Long) v2	carcuB0857
Carg01900	MELO3C012348	Melon (DHL92) v3.5.1	carmeB0834
Carg01900	ClCG05G021810	Watermelon (Charleston Gray)	carwcgB0816
Carg01900	CSPI05G26320	Wild cucumber (PI 183967)	carcpiB0877
Carg01900	Cucsa.282620	Cucumber (Gy14) v1	carcgyB0968
Carg01900	CmaCh04G014370	Cucurbita maxima (Rimu)	carcmaB1170
Carg01900	CmoCh04G015080	Cucurbita moschata (Rifu)	carcmoB1138
Carg01900	Lsi04G001530	Bottle gourd (USVL1VR-Ls)	carlsiB767
Carg01900	Cp4.1LG01g14350	Cucurbita pepo (Zucchini)	carcpeB1177
Carg01900	CsGy5G025780	Cucumber (Gy14) v2	carcgybB0831
Carg01900	MELO3C012348.2	Melon (DHL92) v3.6.1	carmedB0846
Carg01900	CsaV3_5G035360	Cucumber (Chinese Long) v3	carcucB0881
Carg01900	Cla97C05G103520	Watermelon (97103) v2	carwmbB0878
Carg01900	Bhi07G000633	Wax gourd	carwgoB0979

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg01900	Silver-seed gourd	carcarB629
Carg01900	Cucurbita maxima (Rimu)	carcmaB1168
Carg01900	Cucurbita maxima (Rimu)	carcmaB1167
Carg01900	Cucurbita moschata (Rifu)	carcmoB1135
Carg01900	Cucurbita moschata (Rifu)	carcmoB1136
Carg01900	Cucurbita pepo (Zucchini)	carcpeB1169
Carg01900	Cucurbita pepo (Zucchini)	carcpeB1176
Carg01900	Bottle gourd (USVL1VR-Ls)	carlsiB769
Carg01900	Watermelon (Charleston Gray)	carwcgB0819
Carg01900	Watermelon (97103) v1	carwmB0838