CmaCh04G014370 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G014370
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	RNA-directed RNA polymerase VP2
Location	Cma_Chr04 : 7327576 .. 7331270 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCAGAAATTGTTCCGATTAGCGCGAGTGGATCACAAAAATCCGCGCGCTTCGACTTTGTAGCGCAGAATGAGAAGCATTCCCTTTGCCGTTGTTGTCAACTACCTTACACCAACGATTCTCATCTCACCGCTATGAACCTCTAATCTTCACTATCAAACTCTTCAAAACTGTACTCAAAGTTCTTGCCCTGTGATCTTCTCTGCAAGTTTAATCCCTCTCCTCGGTAGCGTTTTAGATGGCAATGATTCTCAAAGGAGGAGGCGGAATTGGAGTTTCAACTGCTACTTACTTTCCTCAGAATTCCAAACCTTCCCCAGTATTCTCGGTTCACACGGTATGTTTTCTCGTTTTGTTCTTATTCCGATTCTGATTTCATTTCTGGTTCTTATTCTGTTATTCTTGGTTTGATTCTGCTATGAATAGACGTACAATTTATTCCTGACTTGATTGCGTTTTAACTGTTTTACCTTTTTCAAGTTTCGAACTCTCTTTTATGGCATAGTTCTTAGAAACTCGTAGTCGATTTTACTTGGTCATATTCTTCTGACTTAGATGTCAAGTGCTCGAGTAAAAGGAGAGGAAAAGAGGAAAACGAAGCTTAAAATTCTCCCTAGAATCAACGTGTTTGTTAGTTTTGGTTCCAAAACTACGGTATCCACCGATTGATTAGCAACATGATTTGGAATTGTAATCCGAAAATAAACCAGGTCCCACTCCAGAAGAGAAAAATACTATTAGGACTTTGAAATTATTTGTACCTAAAAACTATTTCAGCATTTGAATTTTTTATATCATCATTGAACACTAAAGGTTAAGTTCCAATAAATTTAGTTTTTAATTCATGTTCTTATTATTTCTTTTTACATGTAGGCTTGGATATTGGCACGAAGTGAAACAAATAGTTACCAATATTAGTGGTAGATGAAATGACTTTGTAAGGGTTCGAAATATAGGATCTATTACCCTAATACCATCATGATTAATCATAATTGAACCAAAAAATTAAAGTTGATGAATTCTTAACAGTGTTTCAACTGGGGGCAGAGTCATGAACAAGAGAGAGAGAGATCTGGGGAGGGAAGATTCAGTTAGTGGAGGAAAAAAATGTATGAGAGTTCAAAATGGACCCATGAGATAAAGAGGAAGGTAACCATACCTTCAAATCACTCCACTAGATGGAAAGTTGGAAGGTAATATGATGCTATAGGTAGCATTCATGTGTACATAGATTAAGAATATTACATTATAAATATAGAAGAAGAGATTCTGTAATAGCCTAAGCCCACAGCTAACAGATATTGTCATTTTTAAGGTTTCCCTAAAGGGCTTCCTCTCAAAGTATTTAAAACGCGTTTCTTAGGAAGAGGTTTCCATGCCCTTATAATGAATGTTTCGTTTACTCCCCTCCCCAACCGATGTGGGATCTCATAATCCACCCCCTTTGGAGGCCCAGCGTCCTTGCTGGTACACCGCTCAGTGTCTGGCTCTGATACCATTTGTAACAGCCCAAGCCCACCGCTAACAGATATTGCCCTCTTTGGGTTTTCCCTTTTAGGCTTTCTTTCAAGGTTTTAAAATGCATCTACTAGGGAGAAGTTTCCACACCCTTATAAAGAGTGTTTTGTTCCCCTCTCCAACCGATGTGGGATCTCACAGATTCAGACTTAAAATATGAGACACTTATGCCTAAGTTCCAAACCACCTTGCTCGAGTCCGTGATGTGGTAGGTAGGTAGTGGCAAAGAACAACAGAATGGTTGAGCCATAGTTTCTGCCTCGAGTATCTCTTTTTTTGTTGTTTCTAGACACAAGTTTTTCCTACATCCATGATCTTGTTGCATGCCTGCCATACCAGAAAGAACGCATGAGTTCAAGCCAGTACTTTTTAGTATACAAAAATCTACTGGAGCAGTGGAGTGATAGTATCACCTAGCTTTTATGGTTATAGTTGGGATCTGTCATCTTTATTCATCTTTACAGATAGCATCCTGCTCTTCATTTCATAAATTTAGTTTACCGGTAAGAGTGGATATAACTTAAGTTGACTTGTGCAGGTACATAAGCTTCTAGCTGAACGCAGAGTCATATGCTGCTCTACCTTGCAGGAATCATCTACCCCAACAGGTTAGTTGCTGGCAAGTCTTTCATAGTACACCACTGAAAGATTGACAGAGTGCCCCTGAGAGGCATAGATACTGATAGACATGACACCGACACAATGGCACGTCATTTTAAAAAAATCTAGAACATGGATATGGAGAAAAACGTGTTTATTAATATACATCATTTTTATACAAAAAGTAAATAAAAACGTGTTTATTAATATACATCATTTTTATACGAAAAGTAAATTTAATGTCAATAAGTTTTTTTCATTTGTATGCTAAAAAAATGAGTTGAATGTATTTCACGCTCAAAACTTATTGTTTTTGTCCTCTTTTATTAGGTGTATTTTCATTATAATTAACAAGTGTTTAATACGTGTCTAACAAATATTGGACCGGTATTGAACTTGTCTATTGCTAACAAGTATACAACATGTGTCGAACAAGTGTTGGAGTGTCCAAATGTCTGACATATGTTGGATACGGACACGCTAGCCAAACTAAAATGTCTATGCTTCTTAGGTTACCTTTCTTCTGTTCCACATGAAAAGGGTCATGCTCGGGTTTATTTGTTTCTTTCTGCTGCGTTTATTAATACTCAATTTATGGCATCTGCTAAAGTAGAAGTCTTTTCTATCAGTTTCTGCGGAGCCAAAGGAGATAAAGGCAGTTCAGAAGGAAGCTCCAGCAAAGCCCAAACCGCCAGCAAAAGCGCCAGTGAAGCCACTGCCTCAAATGATGGAGGAAGATGTCATACCTTCACTCAAAGCGATACTTGAAGCACAAGCCGATGTTGCTGATATCGAGTTATCGTTCCAAGATGACAGAGTTAGTTTCTTCCATCCCAATTAACGTTCACTAATAAACTCTTAGCTTCAGCTCATTGAATCTGGATTGACAATGGCAGTTGGATGGTTCATTCTCGAAAAATGGAGTTCCCTACTCATTTTGGGCTTTCTTCCCCAATGGCCTCACAGGTACTAAATTCTTCTTAGAGAACGTAACTATTTTATCATTGTCATCACCCTTTAGCTTCTGGTTTTCACTGCCTTTCGTCAAATACAAAAATGGTGAATGTAAGTAAGTACAAATTATCAGAATCTTATGAAAAGCCGAAAATATCTACTACGGATGAACATATCAGAAACTATCATTCAAGTAGAAATCTATTAAATTACTAGATGAAAATTGAGATTTAGGACAGCATAGCAGTGAGCTTGGATAAAAATTAGCACGCTAGCATTGCTACACCTATCTAGGTCTAAATTTCCATCTATAGTTTTAACGGATTTCTACTTCAAAGGATAATTTTGAAACATTTATAAAATGTGTTTAGAAATATTGCAACTTATGAGTAAAAAAAAGAGAAAAAAAAACATCTAAAACTCATTGTCTAATCTTGTTGGAACAGGTCCAAAAGGGTTTTCACTATCCTCATATGGCAACGGAGGAAGCTCTGTTGAGCCATTTCTGGTGGATGAGAAGAAAGTTACAGCAAAGCTTTTAGTTTTTTGGATTGAGAAACGTTTGGCTGCACAAGGAATTATTCCTGTCTGGAAAGACTAATCAACGAAATTATTATTCTTTTC

mRNA sequence

GGCAGAAATTGTTCCGATTAGCGCGAGTGGATCACAAAAATCCGCGCGCTTCGACTTTGTAGCGCAGAATGAGAAGCATTCCCTTTGCCGTTGTTGTCAACTACCTTACACCAACGATTCTCATCTCACCGCTATGAACCTCTAATCTTCACTATCAAACTCTTCAAAACTGTACTCAAAGTTCTTGCCCTGTGATCTTCTCTGCAAGTTTAATCCCTCTCCTCGGTAGCGTTTTAGATGGCAATGATTCTCAAAGGAGGAGGCGGAATTGGAGTTTCAACTGCTACTTACTTTCCTCAGAATTCCAAACCTTCCCCAGTATTCTCGGTTCACACGGTACATAAGCTTCTAGCTGAACGCAGAGTCATATGCTGCTCTACCTTGCAGGAATCATCTACCCCAACAGTTTCTGCGGAGCCAAAGGAGATAAAGGCAGTTCAGAAGGAAGCTCCAGCAAAGCCCAAACCGCCAGCAAAAGCGCCAGTGAAGCCACTGCCTCAAATGATGGAGGAAGATGTCATACCTTCACTCAAAGCGATACTTGAAGCACAAGCCGATGTTGCTGATATCGAGTTATCGTTCCAAGATGACAGATTGGATGGTTCATTCTCGAAAAATGGAGTTCCCTACTCATTTTGGGCTTTCTTCCCCAATGGCCTCACAGGTCCAAAAGGGTTTTCACTATCCTCATATGGCAACGGAGGAAGCTCTGTTGAGCCATTTCTGGTGGATGAGAAGAAAGTTACAGCAAAGCTTTTAGTTTTTTGGATTGAGAAACGTTTGGCTGCACAAGGAATTATTCCTGTCTGGAAAGACTAATCAACGAAATTATTATTCTTTTC

Coding sequence (CDS)

ATGGCAATGATTCTCAAAGGAGGAGGCGGAATTGGAGTTTCAACTGCTACTTACTTTCCTCAGAATTCCAAACCTTCCCCAGTATTCTCGGTTCACACGGTACATAAGCTTCTAGCTGAACGCAGAGTCATATGCTGCTCTACCTTGCAGGAATCATCTACCCCAACAGTTTCTGCGGAGCCAAAGGAGATAAAGGCAGTTCAGAAGGAAGCTCCAGCAAAGCCCAAACCGCCAGCAAAAGCGCCAGTGAAGCCACTGCCTCAAATGATGGAGGAAGATGTCATACCTTCACTCAAAGCGATACTTGAAGCACAAGCCGATGTTGCTGATATCGAGTTATCGTTCCAAGATGACAGATTGGATGGTTCATTCTCGAAAAATGGAGTTCCCTACTCATTTTGGGCTTTCTTCCCCAATGGCCTCACAGGTCCAAAAGGGTTTTCACTATCCTCATATGGCAACGGAGGAAGCTCTGTTGAGCCATTTCTGGTGGATGAGAAGAAAGTTACAGCAAAGCTTTTAGTTTTTTGGATTGAGAAACGTTTGGCTGCACAAGGAATTATTCCTGTCTGGAAAGACTAA

Protein sequence

MAMILKGGGGIGVSTATYFPQNSKPSPVFSVHTVHKLLAERRVICCSTLQESSTPTVSAEPKEIKAVQKEAPAKPKPPAKAPVKPLPQMMEEDVIPSLKAILEAQADVADIELSFQDDRLDGSFSKNGVPYSFWAFFPNGLTGPKGFSLSSYGNGGSSVEPFLVDEKKVTAKLLVFWIEKRLAAQGIIPVWKD

Homology

[Close]

BLAST of CmaCh04G014370 vs. TrEMBL
Match: A0A0A0KUS0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G614630 PE=4 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 1.1e-89
Identity = 170/194 (87.63%), Postives = 182/194 (93.81%), Query Frame = 1


Query: 1   MAMILKGGGGIGVSTATYFPQNSKPSPVFSVHT-VHKLLAERRVICCSTLQESSTPTVSA 60
           MAMILKGG GIGVSTATYFP N KPSP+FS+H  VHKL AER+VICCSTLQESSTPTV+A
Sbjct: 1   MAMILKGGRGIGVSTATYFPHNPKPSPLFSLHMMVHKLAAERKVICCSTLQESSTPTVAA 60

Query: 61  EPKEIKAVQKEAPAKPKPPAKAPVKPLPQMMEEDVIPSLKAILEAQADVADIELSFQDDR 120
           EPKEIK V KEAPAK KPPAKAPVKPLP++M+E+VIPSLKAILEAQADV+D+ LSFQDDR
Sbjct: 61  EPKEIKTVPKEAPAKAKPPAKAPVKPLPELMDEEVIPSLKAILEAQADVSDVALSFQDDR 120

Query: 121 LDGSFSKNGVPYSFWAFFPNGLTGPKGFSLSSYGNGGSSVEPFLVDEKKVTAKLLVFWIE 180
           LDGSF KNGVPYSFWAFFPNGLTGPKGFSLSSYGNGGSSVEPFLVDEKKV+ KL+VFWIE
Sbjct: 121 LDGSFLKNGVPYSFWAFFPNGLTGPKGFSLSSYGNGGSSVEPFLVDEKKVSGKLIVFWIE 180

Query: 181 KRLAAQGIIPVWKD 194
           KRLAAQGIIPVWKD
Sbjct: 181 KRLAAQGIIPVWKD 194

[Close]

BLAST of CmaCh04G014370 vs. TrEMBL
Match: F6H8E9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s2377g00010 PE=4 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 3.1e-63
Identity = 122/159 (76.73%), Postives = 144/159 (90.57%), Query Frame = 1


Query: 36  KLLAERRVICCSTLQESSTPTVSAEPKEIKAVQKEAPAKPKPPAKAPVKPLPQMMEEDVI 95
           K +  RR+I CS +QESSTPTV+AE KE+K  Q++ PAKPKPPAKAPVKPLPQMMEEDVI
Sbjct: 44  KPVTSRRIIACSAVQESSTPTVAAETKEVKPAQEKGPAKPKPPAKAPVKPLPQMMEEDVI 103

Query: 96  PSLKAILEAQADVADIELSFQDDRLDGSFSKNGVPYSFWAFFPNG-LTGPKGFSLSSYGN 155
           PSLK+ILEAQ D+++IELSFQD+RL+GSF K G+PYSFWAFFPNG LTGPKGFSLSSYG+
Sbjct: 104 PSLKSILEAQDDLSEIELSFQDNRLEGSFQKKGIPYSFWAFFPNGVLTGPKGFSLSSYGS 163

Query: 156 GGSSVEPFLVDEKKVTAKLLVFWIEKRLAAQGIIPVWKD 194
           G S+VEPFL+DEK++TAK +VFW+EKRLAAQGIIPVWK+
Sbjct: 164 GSSTVEPFLIDEKRITAKHVVFWVEKRLAAQGIIPVWKE 202

[Close]

BLAST of CmaCh04G014370 vs. TrEMBL
Match: A5ATF4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_015578 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 6.0e-59
Identity = 121/177 (68.36%), Postives = 143/177 (80.79%), Query Frame = 1


Query: 36  KLLAERRVICCSTLQESSTPT------------------VSAEPKEIKAVQKEAPAKPKP 95
           K +  RR+I CS +QESSTPT                  V+AE KE+K  Q++ PAKPKP
Sbjct: 44  KPVTSRRIIACSAVQESSTPTDEWKGLDWSSMYSTCFYLVAAETKEVKPAQEKGPAKPKP 103

Query: 96  PAKAPVKPLPQMMEEDVIPSLKAILEAQADVADIELSFQDDRLDGSFSKNGVPYSFWAFF 155
           PAKAPVKPLPQMMEEDVIPSLK+ILEAQ D+++IELSFQD+RL+GSF K G+PYSFWAFF
Sbjct: 104 PAKAPVKPLPQMMEEDVIPSLKSILEAQDDLSEIELSFQDNRLEGSFQKKGIPYSFWAFF 163

Query: 156 PNG-LTGPKGFSLSSYGNGGSSVEPFLVDEKKVTAKLLVFWIEKRLAAQGIIPVWKD 194
            NG LTGPKGFSLSSYG+G S+VEPFL+DEK++TAK +VFW+EKRLAAQGIIPVWK+
Sbjct: 164 XNGVLTGPKGFSLSSYGSGSSTVEPFLIDEKRITAKHVVFWVEKRLAAQGIIPVWKE 220

[Close]

BLAST of CmaCh04G014370 vs. TrEMBL
Match: M5WEP3_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa021078mg PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 6.7e-58
Identity = 118/163 (72.39%), Postives = 137/163 (84.05%), Query Frame = 1


Query: 32  HTVHKLLAERRVICCSTLQESSTPTVSAEPKEIKAVQKEAPAKPKPPAKAPVKPLPQMME 91
           HTV KL+  +R I CS L ESST TV+A+ KE+K  QK APAKPK  AKAPVKPLPQMME
Sbjct: 2   HTVSKLVTSQRNIVCSALPESSTSTVAADTKEVKTAQKAAPAKPKVAAKAPVKPLPQMME 61

Query: 92  EDVIPSLKAILEAQADVADIELSFQDDRLDGSFSKNGVPYSFWAFFPNG-LTGPKGFSLS 151
           EDVIP LKAILE Q +++DIELSFQ+++L+G F K  + YSFWAFFP+G LTGPKGFSLS
Sbjct: 62  EDVIPQLKAILETQDELSDIELSFQENKLEGFFLKKDIRYSFWAFFPSGVLTGPKGFSLS 121

Query: 152 SYGNGGSSVEPFLVDEKKVTAKLLVFWIEKRLAAQGIIPVWKD 194
           SYG G S+VEPFL+DEKK+TAK +VFW+EKRLAAQGIIPVWKD
Sbjct: 122 SYGQGASTVEPFLIDEKKITAKHIVFWVEKRLAAQGIIPVWKD 164

[Close]

BLAST of CmaCh04G014370 vs. TrEMBL
Match: A0A067E764_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029104mg PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 1.5e-57
Identity = 125/199 (62.81%), Postives = 154/199 (77.39%), Query Frame = 1


Query: 3   MILKGGGGIGVST---ATYFPQNSKP-SPVFSVHTVHKLLAERRVICCSTLQESSTPTVS 62
           M + GG  +GVS+   ++YF +N K  S  F +       A R  I CS +QE+ST  V+
Sbjct: 1   MSILGGRAVGVSSFPSSSYFSRNVKSTSSAFPLQMACTSAALRGCIACSAVQETSTSAVA 60

Query: 63  AEPKEIKAVQKEAPAKPKPPA---KAPVKPLPQMMEEDVIPSLKAILEAQADVADIELSF 122
           AE KE K V+KEAPAKPKPPA   KAP KPLP++MEEDVIPSLKAILEAQ D+++IEL F
Sbjct: 61  AETKEAKPVEKEAPAKPKPPARAPKAPAKPLPELMEEDVIPSLKAILEAQDDLSNIELCF 120

Query: 123 QDDRLDGSFSKNGVPYSFWAFFPNG-LTGPKGFSLSSYGNGGSSVEPFLVDEKKVTAKLL 182
           +D++L+GSF K G  YSFWAFFPNG L GPKGFSLSSYG+G S+VEPFL+DEKK+TA+ +
Sbjct: 121 KDNKLEGSFMKKGNNYSFWAFFPNGILAGPKGFSLSSYGSGASTVEPFLIDEKKITARHV 180

Query: 183 VFWIEKRLAAQGIIPVWKD 194
           VFW+EKRLAAQGI+PVWK+
Sbjct: 181 VFWVEKRLAAQGILPVWKE 199

[Close]

BLAST of CmaCh04G014370 vs. TAIR10
Match: AT2G04039.3 (AT2G04039.3 unknown protein)

HSP 1 Score: 104.0 bits (258), Expect = 1.1e-22
Identity = 80/197 (40.61%), Postives = 102/197 (51.78%), Query Frame = 1


Query: 1   MAMILKGGGGIGVSTATYFPQNSKPSPVFSVHTVHKLLAERRVICCSTLQESSTPTVSAE 60
           MA I  G  G+  S  +        S +    T+     +  ++ C+ LQESST  V+ E
Sbjct: 1   MATIAGGSFGVPSSRISITTPTLSSSSLLPPLTLQSGTRKDNLLRCA-LQESSTSAVATE 60

Query: 61  PKEIKAVQKEAPA----KPKPPAKAPV--KPLPQMMEEDVIPSLKAILEAQADVADIELS 120
            K  +  ++   A    KPKP AKA    KPL QMMEEDVIP L+AILE+Q D++DI+LS
Sbjct: 61  KKNKEEGEESTVAVPAKKPKPAAKAAAVAKPLRQMMEEDVIPPLQAILESQDDISDIDLS 120

Query: 121 FQDDRLDGSFSKNGVPYSFWAFFPNG-LTG-PKGFSLSSYGNGGSSVEPFLVDEKKVTAK 180
           FQDD+L+G F K  +PYSFWAFFP G LTG  K F     G   +    FL         
Sbjct: 121 FQDDKLEGFFLKKSIPYSFWAFFPTGNLTGEQKDFQFPHTGQVRAPWNHFLSTRGNQLRT 180

Query: 181 LLVFWIEKRLAAQGIIP 190
            L F     L  +G  P
Sbjct: 181 TLCFGSRSVLLHKGSSP 196

[Close]

BLAST of CmaCh04G014370 vs. NCBI nr
Match: gi|449434508|ref|XP_004135038.1| (PREDICTED: uncharacterized protein LOC101205552 [Cucumis sativus])

HSP 1 Score: 337.4 bits (864), Expect = 1.6e-89
Identity = 170/194 (87.63%), Postives = 182/194 (93.81%), Query Frame = 1


Query: 1   MAMILKGGGGIGVSTATYFPQNSKPSPVFSVHT-VHKLLAERRVICCSTLQESSTPTVSA 60
           MAMILKGG GIGVSTATYFP N KPSP+FS+H  VHKL AER+VICCSTLQESSTPTV+A
Sbjct: 1   MAMILKGGRGIGVSTATYFPHNPKPSPLFSLHMMVHKLAAERKVICCSTLQESSTPTVAA 60

Query: 61  EPKEIKAVQKEAPAKPKPPAKAPVKPLPQMMEEDVIPSLKAILEAQADVADIELSFQDDR 120
           EPKEIK V KEAPAK KPPAKAPVKPLP++M+E+VIPSLKAILEAQADV+D+ LSFQDDR
Sbjct: 61  EPKEIKTVPKEAPAKAKPPAKAPVKPLPELMDEEVIPSLKAILEAQADVSDVALSFQDDR 120

Query: 121 LDGSFSKNGVPYSFWAFFPNGLTGPKGFSLSSYGNGGSSVEPFLVDEKKVTAKLLVFWIE 180
           LDGSF KNGVPYSFWAFFPNGLTGPKGFSLSSYGNGGSSVEPFLVDEKKV+ KL+VFWIE
Sbjct: 121 LDGSFLKNGVPYSFWAFFPNGLTGPKGFSLSSYGNGGSSVEPFLVDEKKVSGKLIVFWIE 180

Query: 181 KRLAAQGIIPVWKD 194
           KRLAAQGIIPVWKD
Sbjct: 181 KRLAAQGIIPVWKD 194

[Close]

BLAST of CmaCh04G014370 vs. NCBI nr
Match: gi|659091830|ref|XP_008446754.1| (PREDICTED: uncharacterized protein LOC103489386 [Cucumis melo])

HSP 1 Score: 331.3 bits (848), Expect = 1.2e-87
Identity = 171/195 (87.69%), Postives = 182/195 (93.33%), Query Frame = 1


Query: 1   MAMILKGGGGIGVSTATYFP-QNSKPSPVFSVHT-VHKLLAERRVICCSTLQESSTPTVS 60
           MAMILKGG G+GVSTATYFP  N KPSP+FS+H  VHKL AER+VICCSTLQESSTPTV+
Sbjct: 1   MAMILKGGRGLGVSTATYFPAHNPKPSPLFSLHMMVHKLAAERKVICCSTLQESSTPTVA 60

Query: 61  AEPKEIKAVQKEAPAKPKPPAKAPVKPLPQMMEEDVIPSLKAILEAQADVADIELSFQDD 120
           AEPKEIK V KEAPAK KPPAKA VKPLP++MEE+VIPSLKAILEAQADV DIELSFQDD
Sbjct: 61  AEPKEIKTVPKEAPAKAKPPAKAAVKPLPELMEEEVIPSLKAILEAQADVYDIELSFQDD 120

Query: 121 RLDGSFSKNGVPYSFWAFFPNGLTGPKGFSLSSYGNGGSSVEPFLVDEKKVTAKLLVFWI 180
           RLDGSF K+GVPYSFWAFFPNGLTGPKGFSLSSYGNGGSSVEPFLVDEKKV+AKL+VFWI
Sbjct: 121 RLDGSFLKDGVPYSFWAFFPNGLTGPKGFSLSSYGNGGSSVEPFLVDEKKVSAKLIVFWI 180

Query: 181 EKRLAAQGIIPVWKD 194
           EKRLAAQGIIPVWKD
Sbjct: 181 EKRLAAQGIIPVWKD 195

[Close]

BLAST of CmaCh04G014370 vs. NCBI nr
Match: gi|296083572|emb|CBI23563.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 249.6 bits (636), Expect = 4.4e-63
Identity = 122/159 (76.73%), Postives = 144/159 (90.57%), Query Frame = 1


Query: 36  KLLAERRVICCSTLQESSTPTVSAEPKEIKAVQKEAPAKPKPPAKAPVKPLPQMMEEDVI 95
           K +  RR+I CS +QESSTPTV+AE KE+K  Q++ PAKPKPPAKAPVKPLPQMMEEDVI
Sbjct: 7   KPVTSRRIIACSAVQESSTPTVAAETKEVKPAQEKGPAKPKPPAKAPVKPLPQMMEEDVI 66

Query: 96  PSLKAILEAQADVADIELSFQDDRLDGSFSKNGVPYSFWAFFPNG-LTGPKGFSLSSYGN 155
           PSLK+ILEAQ D+++IELSFQD+RL+GSF K G+PYSFWAFFPNG LTGPKGFSLSSYG+
Sbjct: 67  PSLKSILEAQDDLSEIELSFQDNRLEGSFQKKGIPYSFWAFFPNGVLTGPKGFSLSSYGS 126

Query: 156 GGSSVEPFLVDEKKVTAKLLVFWIEKRLAAQGIIPVWKD 194
           G S+VEPFL+DEK++TAK +VFW+EKRLAAQGIIPVWK+
Sbjct: 127 GSSTVEPFLIDEKRITAKHVVFWVEKRLAAQGIIPVWKE 165

[Close]

BLAST of CmaCh04G014370 vs. NCBI nr
Match: gi|1009125591|ref|XP_015879692.1| (PREDICTED: uncharacterized protein LOC107415808 isoform X1 [Ziziphus jujuba])

HSP 1 Score: 248.4 bits (633), Expect = 9.9e-63
Identity = 136/215 (63.26%), Postives = 165/215 (76.74%), Query Frame = 1


Query: 1   MAMILK---GGGGIGVST-------ATYFPQNSKPSPVFSVHTVHKLLAERRVICCSTLQ 60
           MAM+L+   GGGG+GVS+       ++YF  NSKP+ + S  ++H L+  RR I C  +Q
Sbjct: 3   MAMMLRCGHGGGGVGVSSFPSSSSSSSYFTHNSKPTSLSS--SIHMLVTRRRNIACFAVQ 62

Query: 61  ESSTPTVSAEPKEIKAVQKEA-----------PAKPKPPAKAPVKPLPQMMEEDVIPSLK 120
           ESS  TV+A+ KE +A  KEA           PAKPK PAKAP KPLPQMMEEDVIPSL+
Sbjct: 63  ESSIKTVAADTKEAEAKAKEAEATAKTAPKASPAKPKAPAKAPAKPLPQMMEEDVIPSLR 122

Query: 121 AILEAQADVADIELSFQDDRLDGSFSKNGVPYSFWAFFPNG-LTGPKGFSLSSYGNGGSS 180
           +ILEAQ D++++ELSFQD+RL+GSF K G  YSFWAFFPNG LTGPKGFSLSSYG+G S+
Sbjct: 123 SILEAQQDISELELSFQDNRLEGSFLKKGNAYSFWAFFPNGVLTGPKGFSLSSYGSGAST 182

Query: 181 VEPFLVDEKKVTAKLLVFWIEKRLAAQGIIPVWKD 194
           VEPFL+DEKK+TAK +VFW+EKRLAAQGIIPVWKD
Sbjct: 183 VEPFLIDEKKITAKHVVFWVEKRLAAQGIIPVWKD 215

[Close]

BLAST of CmaCh04G014370 vs. NCBI nr
Match: gi|1009125593|ref|XP_015879693.1| (PREDICTED: uncharacterized protein LOC107415808 isoform X2 [Ziziphus jujuba])

HSP 1 Score: 241.5 bits (615), Expect = 1.2e-60
Identity = 134/212 (63.21%), Postives = 162/212 (76.42%), Query Frame = 1


Query: 1   MAMILK---GGGGIGVST-------ATYFPQNSKPSPVFSVHTVHKLLAERRVICCSTLQ 60
           MAM+L+   GGGG+GVS+       ++YF  NSKP+ + S  ++H L+  RR I C  +Q
Sbjct: 3   MAMMLRCGHGGGGVGVSSFPSSSSSSSYFTHNSKPTSLSS--SIHMLVTRRRNIACFAVQ 62

Query: 61  ESSTPT----VSAEPKEIKAVQKEAP----AKPKPPAKAPVKPLPQMMEEDVIPSLKAIL 120
           ESS  T      A+ KE +A  K AP    AKPK PAKAP KPLPQMMEEDVIPSL++IL
Sbjct: 63  ESSIKTDTKEAEAKAKEAEATAKTAPKASPAKPKAPAKAPAKPLPQMMEEDVIPSLRSIL 122

Query: 121 EAQADVADIELSFQDDRLDGSFSKNGVPYSFWAFFPNG-LTGPKGFSLSSYGNGGSSVEP 180
           EAQ D++++ELSFQD+RL+GSF K G  YSFWAFFPNG LTGPKGFSLSSYG+G S+VEP
Sbjct: 123 EAQQDISELELSFQDNRLEGSFLKKGNAYSFWAFFPNGVLTGPKGFSLSSYGSGASTVEP 182

Query: 181 FLVDEKKVTAKLLVFWIEKRLAAQGIIPVWKD 194
           FL+DEKK+TAK +VFW+EKRLAAQGIIPVWKD
Sbjct: 183 FLIDEKKITAKHVVFWVEKRLAAQGIIPVWKD 212

The following BLAST results are available for this feature:

BLAST of CmaCh04G014370 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh04G014370 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KUS0_CUCSA	1.1e-89	87.63	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G614630 PE=4 SV=1	[more]
F6H8E9_VITVI	3.1e-63	76.73	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s2377g00010 PE=4 SV=...	[more]
A5ATF4_VITVI	6.0e-59	68.36	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_015578 PE=4 SV=1	[more]
M5WEP3_PRUPE	6.7e-58	72.39	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa021078mg PE=4 S...	[more]
A0A067E764_CITSI	1.5e-57	62.81	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029104mg PE=4 SV=1	[more]

BLAST of CmaCh04G014370 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G04039.3	1.1e-22	40.61	unknown protein	[more]

BLAST of CmaCh04G014370 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449434508\|ref\|XP_004135038.1\|	1.6e-89	87.63	PREDICTED: uncharacterized protein LOC101205552 [Cucumis sativus]	[more]
gi\|659091830\|ref\|XP_008446754.1\|	1.2e-87	87.69	PREDICTED: uncharacterized protein LOC103489386 [Cucumis melo]	[more]
gi\|296083572\|emb\|CBI23563.3\|	4.4e-63	76.73	unnamed protein product [Vitis vinifera]	[more]
gi\|1009125591\|ref\|XP_015879692.1\|	9.9e-63	63.26	PREDICTED: uncharacterized protein LOC107415808 isoform X1 [Ziziphus jujuba]	[more]
gi\|1009125593\|ref\|XP_015879693.1\|	1.2e-60	63.21	PREDICTED: uncharacterized protein LOC107415808 isoform X2 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR021374	DUF2996

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
biological_process	GO:0008150	biological_process
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0009579	thylakoid
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G014370.1	CmaCh04G014370.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021374	Protein of unknown function DUF2996	PFAM	PF11210	DUF2996	coord: 84..186 score: 2.7
None	No IPR available	PANTHER	PTHR36341	FAMILY NOT NAMED	coord: 36..193 score: 2.2
None	No IPR available	PANTHER	PTHR36341:SF2	SUBFAMILY NOT NAMED	coord: 36..193 score: 2.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G014370	Cucsa.282620	Cucumber (Gy14) v1	cgycmaB0801
CmaCh04G014370	Cla020487	Watermelon (97103) v1	cmawmB699
CmaCh04G014370	Csa5G614630	Cucumber (Chinese Long) v2	cmacuB748
CmaCh04G014370	MELO3C012348	Melon (DHL92) v3.5.1	cmameB640
CmaCh04G014370	ClCG05G021810	Watermelon (Charleston Gray)	cmawcgB655
CmaCh04G014370	CSPI05G26320	Wild cucumber (PI 183967)	cmacpiB755
CmaCh04G014370	CmoCh04G015080	Cucurbita moschata (Rifu)	cmacmoB728
CmaCh04G014370	Lsi04G001530	Bottle gourd (USVL1VR-Ls)	cmalsiB669
CmaCh04G014370	MELO3C012348.2	Melon (DHL92) v3.6.1	cmamedB726
CmaCh04G014370	CsaV3_5G035360	Cucumber (Chinese Long) v3	cmacucB0885
CmaCh04G014370	Cla97C05G103520	Watermelon (97103) v2	cmawmbB758
CmaCh04G014370	Bhi07G000633	Wax gourd	cmawgoB0903
CmaCh04G014370	CsGy5G025780	Cucumber (Gy14) v2	cgybcmaB672
CmaCh04G014370	Carg01900	Silver-seed gourd	carcmaB1170

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G014370	Silver-seed gourd	carcmaB1457
CmaCh04G014370	Cucurbita maxima (Rimu)	cmacmaB402
CmaCh04G014370	Cucurbita maxima (Rimu)	cmacmaB536
CmaCh04G014370	Cucurbita moschata (Rifu)	cmacmoB706
CmaCh04G014370	Cucurbita moschata (Rifu)	cmacmoB740
CmaCh04G014370	Watermelon (Charleston Gray)	cmawcgB679
CmaCh04G014370	Watermelon (97103) v1	cmawmB667
CmaCh04G014370	Cucurbita pepo (Zucchini)	cmacpeB700
CmaCh04G014370	Cucurbita pepo (Zucchini)	cmacpeB720
CmaCh04G014370	Cucurbita pepo (Zucchini)	cmacpeB734
CmaCh04G014370	Bottle gourd (USVL1VR-Ls)	cmalsiB706