CmoCh04G014220 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G014220
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionCell wall integrity and stress response component 2, putative
LocationCmo_Chr04 : 7234898 .. 7236669 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACAAGAGAGGTTCTTCTGTTCTTTCCTTTTTTTGCTCTGTTTCTTCATTACAAAGTGATTTCATGCACTTGAGAAATGGATTGCACCACTGTAAGTTACAGAGGGCTTTAGTTAATGTAATATATATGGGCTACAGACCATAGAAGGATCTACATAATACTACACACTTTTTTAAAAGAAACGAAAAGATAAGATAAGGGGAATATATTCAGTATCCTATAAACAGGAACTTATTCTTGACACAATGCTAAGAATGCACAGATTCTCACTACAATGAGAAAATGGAAAAAAGAAAAGAAAAAAAAACCCTCTCAGTCATGTTGTTCACACCCATTTCAGCTCGGTGAAGTTCTAAATGTTTTATCACCTAATATTCCAAAATTTGTTTGTCTCATCAAGGAAGAATCTTCCTGGAATGGCCCAAGCTCACCGCTAGTATATATTATCTTTTTTGAGCTTCCCCTCAAGATTTTTAAAACGCGTTTACTAGGGAGAGGTTTCCACACCCTTATAAAGAATGTTTCGTTCTCCTCCCCAATCGATGTGGGGCCTCACACTTTCACTTAGAAACTTCTGTGGGACCTCACACTCACTTGGACACCTCTAATCTTTGTTCTACTTTCTTGAAGAGTGGAGAATGTATGAACTTAGGTGTGAACATACTCTTCATCATGAATAGCAAGATTCTCTGTTAGGTAAAGTAAGCACTTTCTAAGCATATATAGGCAAGCAATATATGGGTTGTTCATTGAAGTAGTGAAACCTCACGGCCACTGATTTGTCTTTCTTCTGATGGCTTGTGAAGACGCAAAGAACAAAGAGTGCTGCCATGTAGCAGCAGATGTTCCAAACCAGCCTCAGCCATCAGGTTTTTTTCAACTCTTTTCTTGTGGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTAGATGGGGAAAGATTCTTATGTAAATCTTGTTTCAACTCACTTATCAGAAAAAAAGAGTTTTCGATGCCCACACACACAAAAGAAAGGGAACAGAAACTTCCTTGAAGGATGGTAAGTGTAGTTCTCAACCACTGTTCTTTCTTTCTGCAGTTTCATTGGTTACAAGTTTTGGTTCACTTTCGTAAGCACTCTTTCTGATTTAGTGTAAGAATTCAGGAAGACTGTCTTTTCATTGTGCAGATGCACATGGTTTTATCTGTTTACTGTGTGTTTCATAAACTAGTAGTGATTTTCAAAATTCTCTGCAGCATCTTTGCTTTGTGCTGTTGCTGGATTTGTGATGCTTGCTTTGATGTTAGTGTGACTGTGTGATTAACATCAGCAGCAGCAGGATTTACGCTATATGCATAGCCAACAGACAACTATCTAGCAATTTTACTGTTTAAGACATGACTGGATGACTCGTGTGATGTGATCTATCTCAAACCAAATATTAGCTGAACACTTTTTTCTCTTCATATTGTATTAGTTCTTCCAGAACTCAGGCAGCTGTTCATATTTTCTTGTGACTTCCAACCTTATAAGTTTGAAGTCAATGTAATGAGAAGTGAAAACATGTGTAATAGAGAAATTTTCTCATCCACAAATGGGTTACGCCTCACCAAGCCAAGAATGGAATTGATTATCCAAAGTATGTAAAGAACCAATCTAAAACGATTTGTTTTCTCGATTACGATGGTATAACCGAGCAATTACTGGATCATTGAGAAGCAGTTTAATGTCACCCAAGGCAGCCCAAATCTTGTGGTTTAGGAAATCTAGAACAAGACTGATGGAATAAAAGGACGA

mRNA sequence

ACAAGAGAGGTTCTTCTGTTCTTTCCTTTTTTTGCTCTGTTTCTTCATTACAAAGTGATTTCATGCACTTGAGAAATGGATTGCACCACTGTAAGTTACAGAGGGCTTTAGTTAATGTAATATATATGGGCTACAGACCATAGAAGGATCTACATAATACTACACACTTTTTTAAAAGAAACGAAAAGATAAGATAAGGGGAATATATTCAGTATCCTATAAACAGGAACTTATTCTTGACACAATGCTAAGAATGCACAGATTCTCACTACAATGAGAAAATGGAAAAAAGAAAAGAAAAAAAAACCCTCTCAGTCATGTTGTTCACACCCATTTCAGCTCGGTGAAGTTCTAAATGTTTTATCACCTAATATTCCAAAATTTGTTTGTCTCATCAAGGAAGAATCTTCCTGGAATGGCCCAAGCTCACCGCTAGTATATATTATCTTTTTTGAGCTTCCCCTCAAGATTTTTAAAACGCGTTTACTAGGGAGAGGTTTCCACACCCTTATAAAGAATGTTTCGTTCTCCTCCCCAATCGATGTGGGGCCTCACACTTTCACTTAGAAACTTCTGTGGGACCTCACACTCACTTGGACACCTCTAATCTTTGTTCTACTTTCTTGAAGAGTGGAGAATGTATGAACTTAGGTGTGAACATACTCTTCATCATGAATAGCAAGATTCTCTGTTAGGTAAAGTAAGCACTTTCTAAGCATATATAGGCAAGCAATATATGGGTTGTTCATTGAAGTAGTGAAACCTCACGGCCACTGATTTGTCTTTCTTCTGATGGCTTGTGAAGACGCAAAGAACAAAGAGTGCTGCCATGTAGCAGCAGATGTTCCAAACCAGCCTCAGCCATCAGAAAAAAAGAGTTTTCGATGCCCACACACACAAAAGAAAGGGAACAGAAACTTCCTTGAAGGATGCATCTTTGCTTTGTGCTGTTGCTGGATTTGTGATGCTTGCTTTGATGTTAGTGTGACTGTGTGATTAACATCAGCAGCAGCAGGATTTACGCTATATGCATAGCCAACAGACAACTATCTAGCAATTTTACTGTTTAAGACATGACTGGATGACTCGTGTGATGTGATCTATCTCAAACCAAATATTAGCTGAACACTTTTTTCTCTTCATATTGTATTAGTTCTTCCAGAACTCAGGCAGCTGTTCATATTTTCTTGTGACTTCCAACCTTATAAGTTTGAAGTCAATGTAATGAGAAGTGAAAACATGTGTAATAGAGAAATTTTCTCATCCACAAATGGGTTACGCCTCACCAAGCCAAGAATGGAATTGATTATCCAAAGTATGTAAAGAACCAATCTAAAACGATTTGTTTTCTCGATTACGATGGTATAACCGAGCAATTACTGGATCATTGAGAAGCAGTTTAATGTCACCCAAGGCAGCCCAAATCTTGTGGTTTAGGAAATCTAGAACAAGACTGATGGAATAAAAGGACGA

Coding sequence (CDS)

ATGGCTTGTGAAGACGCAAAGAACAAAGAGTGCTGCCATGTAGCAGCAGATGTTCCAAACCAGCCTCAGCCATCAGAAAAAAAGAGTTTTCGATGCCCACACACACAAAAGAAAGGGAACAGAAACTTCCTTGAAGGATGCATCTTTGCTTTGTGCTGTTGCTGGATTTGTGATGCTTGCTTTGATGTTAGTGTGACTGTGTGA
Homology
[Close]
BLAST of CmoCh04G014220 vs. TrEMBL
Match: B9SZT3_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1108230 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 6.4e-08
Identity = 27/48 (56.25%), Postives = 34/48 (70.83%), Query Frame = 1 

Query: 20 NQPQPS------EKKSFRCPHTQKKGNRNFLEGCIFALCCCWICDACF 62
          NQP P         K   CP+T+KKG+R F+EGC+FALCCCW+C+ACF
Sbjct: 9  NQPPPGYPTDTPTAKKKCCPNTKKKGDRGFIEGCLFALCCCWLCEACF 56

[Close]
BLAST of CmoCh04G014220 vs. TrEMBL
Match: A0A067H6R0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g035469mg PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.4e-07
Identity = 26/32 (81.25%), Postives = 31/32 (96.88%), Query Frame = 1 

Query: 35 TQKKGN-RNFLEGCIFALCCCWICDACFDVSV 66
          T+KKGN R+F+EGC+FALCCCWICDACFDV+V
Sbjct: 28 TKKKGNDRSFIEGCLFALCCCWICDACFDVTV 59

[Close]
BLAST of CmoCh04G014220 vs. TrEMBL
Match: V4VHQ6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033235mg PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.4e-07
Identity = 26/32 (81.25%), Postives = 31/32 (96.88%), Query Frame = 1 

Query: 35 TQKKGN-RNFLEGCIFALCCCWICDACFDVSV 66
          T+KKGN R+F+EGC+FALCCCWICDACFDV+V
Sbjct: 42 TKKKGNDRSFIEGCLFALCCCWICDACFDVTV 73

[Close]
BLAST of CmoCh04G014220 vs. TrEMBL
Match: D7LXF5_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_908293 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 5.4e-07
Identity = 28/50 (56.00%), Postives = 35/50 (70.00%), Query Frame = 1 

Query: 14 VAADVPNQP--QPSEKKSFRCPHTQKKGNRNFLEGCIFALCCCWICDACF 62
          VA  V  QP  +  +KK  R   T+KKG+R F+EGC+FALCCCWIC+ CF
Sbjct: 15 VAEQVSEQPGQEDKKKKKPRFFETKKKGDRGFIEGCLFALCCCWICEMCF 64

[Close]
BLAST of CmoCh04G014220 vs. TrEMBL
Match: K4BRF8_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 5.4e-07
Identity = 24/43 (55.81%), Postives = 34/43 (79.07%), Query Frame = 1 

Query: 22 PQPSEKKS--FRC-PHTQKKGNRNFLEGCIFALCCCWICDACF 62
          PQP+EKK+   +C P ++ KG R F+EGC+FA+CCCW+C+ CF
Sbjct: 18 PQPTEKKNKKMKCFPRSKPKGERGFIEGCLFAICCCWVCEVCF 60

[Close]
BLAST of CmoCh04G014220 vs. TAIR10
Match: AT5G04080.1 (AT5G04080.1 unknown protein)

HSP 1 Score: 59.7 bits (143), Expect = 8.0e-10
Identity = 27/48 (56.25%), Postives = 34/48 (70.83%), Query Frame = 1 

Query: 15 AADVPNQP-QPSEKKSFRCPHTQKKGNRNFLEGCIFALCCCWICDACF 62
          A  V  QP Q  +KK  R   T++KG+R F+EGC+FALCCCWIC+ CF
Sbjct: 16 AEQVSEQPGQDKKKKKPRFFETKQKGDRGFIEGCLFALCCCWICEMCF 63

[Close]
BLAST of CmoCh04G014220 vs. NCBI nr
Match: gi|223528889|gb|EEF30889.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 64.3 bits (155), Expect = 9.2e-08
Identity = 27/48 (56.25%), Postives = 34/48 (70.83%), Query Frame = 1 

Query: 20 NQPQPS------EKKSFRCPHTQKKGNRNFLEGCIFALCCCWICDACF 62
          NQP P         K   CP+T+KKG+R F+EGC+FALCCCW+C+ACF
Sbjct: 9  NQPPPGYPTDTPTAKKKCCPNTKKKGDRGFIEGCLFALCCCWLCEACF 56

[Close]
BLAST of CmoCh04G014220 vs. NCBI nr
Match: gi|567892727|ref|XP_006438884.1| (hypothetical protein CICLE_v10033235mg [Citrus clementina])

HSP 1 Score: 63.2 bits (152), Expect = 2.0e-07
Identity = 26/32 (81.25%), Postives = 31/32 (96.88%), Query Frame = 1 

Query: 35 TQKKGN-RNFLEGCIFALCCCWICDACFDVSV 66
          T+KKGN R+F+EGC+FALCCCWICDACFDV+V
Sbjct: 42 TKKKGNDRSFIEGCLFALCCCWICDACFDVTV 73

[Close]
BLAST of CmoCh04G014220 vs. NCBI nr
Match: gi|641864525|gb|KDO83211.1| (hypothetical protein CISIN_1g035469mg [Citrus sinensis])

HSP 1 Score: 63.2 bits (152), Expect = 2.0e-07
Identity = 26/32 (81.25%), Postives = 31/32 (96.88%), Query Frame = 1 

Query: 35 TQKKGN-RNFLEGCIFALCCCWICDACFDVSV 66
          T+KKGN R+F+EGC+FALCCCWICDACFDV+V
Sbjct: 28 TKKKGNDRSFIEGCLFALCCCWICDACFDVTV 59

[Close]
BLAST of CmoCh04G014220 vs. NCBI nr
Match: gi|764608852|ref|XP_011467336.1| (PREDICTED: cysteine-rich and transmembrane domain-containing protein A [Fragaria vesca subsp. vesca])

HSP 1 Score: 62.0 bits (149), Expect = 4.6e-07
Identity = 24/38 (63.16%), Postives = 31/38 (81.58%), Query Frame = 1 

Query: 24 PSEKKSFRCPHTQKKGNRNFLEGCIFALCCCWICDACF 62
          P  +K FR P T+KKG+R F+EGC+FALCCCW+C+ CF
Sbjct: 23 PPTRKKFR-PQTKKKGDRGFIEGCLFALCCCWLCEECF 59

[Close]
BLAST of CmoCh04G014220 vs. NCBI nr
Match: gi|297806383|ref|XP_002871075.1| (hypothetical protein ARALYDRAFT_908293 [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 61.2 bits (147), Expect = 7.8e-07
Identity = 28/50 (56.00%), Postives = 35/50 (70.00%), Query Frame = 1 

Query: 14 VAADVPNQP--QPSEKKSFRCPHTQKKGNRNFLEGCIFALCCCWICDACF 62
          VA  V  QP  +  +KK  R   T+KKG+R F+EGC+FALCCCWIC+ CF
Sbjct: 15 VAEQVSEQPGQEDKKKKKPRFFETKKKGDRGFIEGCLFALCCCWICEMCF 64

The following BLAST results are available for this feature:
BLAST of CmoCh04G014220 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh04G014220 vs. TrEMBL
Match NameE-valueIdentityDescription
B9SZT3_RICCO6.4e-0856.25Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1108230 PE=4 SV=1[more]
A0A067H6R0_CITSI1.4e-0781.25Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g035469mg PE=4 SV=1[more]
V4VHQ6_9ROSI1.4e-0781.25Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033235mg PE=4 SV=1[more]
D7LXF5_ARALL5.4e-0756.00Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRA... [more]
K4BRF8_SOLLC5.4e-0755.81Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
BLAST of CmoCh04G014220 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G04080.18.0e-1056.25 unknown protein[more]
BLAST of CmoCh04G014220 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|223528889|gb|EEF30889.1|9.2e-0856.25conserved hypothetical protein [Ricinus communis][more]
gi|567892727|ref|XP_006438884.1|2.0e-0781.25hypothetical protein CICLE_v10033235mg [Citrus clementina][more]
gi|641864525|gb|KDO83211.1|2.0e-0781.25hypothetical protein CISIN_1g035469mg [Citrus sinensis][more]
gi|764608852|ref|XP_011467336.1|4.6e-0763.16PREDICTED: cysteine-rich and transmembrane domain-containing protein A [Fragaria... [more]
gi|297806383|ref|XP_002871075.1|7.8e-0756.00hypothetical protein ARALYDRAFT_908293 [Arabidopsis lyrata subsp. lyrata][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR028144CYSTM_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G014220.1CmoCh04G014220.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR028144Cysteine-rich transmembrane CYSTM domainPFAMPF12734CYSTMcoord: 19..61
score: 7.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh04G014220CmaCh04G013470Cucurbita maxima (Rimu)cmacmoB728
CmoCh04G014220Cla020587Watermelon (97103) v1cmowmB693
CmoCh04G014220ClCG05G020750Watermelon (Charleston Gray)cmowcgB654
CmoCh04G014220Lsi04G000460Bottle gourd (USVL1VR-Ls)cmolsiB660
CmoCh04G014220Cp4.1LG01g15000Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G014220Cla97C05G102490Watermelon (97103) v2cmowmbB729
CmoCh04G014220Carg01977Silver-seed gourdcarcmoB1138
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G014220Cucumber (Chinese Long) v3cmocucB0874
CmoCh04G014220Wax gourdcmowgoB0904
CmoCh04G014220Cucurbita moschata (Rifu)cmocmoB336
CmoCh04G014220Cucumber (Gy14) v1cgycmoB0848
CmoCh04G014220Cucurbita maxima (Rimu)cmacmoB420
CmoCh04G014220Wild cucumber (PI 183967)cmocpiB745
CmoCh04G014220Cucumber (Chinese Long) v2cmocuB738
CmoCh04G014220Melon (DHL92) v3.5.1cmomeB631
CmoCh04G014220Cucurbita pepo (Zucchini)cmocpeB651
CmoCh04G014220Cucumber (Gy14) v2cgybcmoB650
CmoCh04G014220Melon (DHL92) v3.6.1cmomedB720
CmoCh04G014220Silver-seed gourdcarcmoB0655