CmoCh04G014220.1 (mRNA) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G014220.1
TypemRNA
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionCell wall integrity and stress response component 2, putative
LocationCmo_Chr04 : 7234898 .. 7236669 (-)
Sequence length1473
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACAAGAGAGGTTCTTCTGTTCTTTCCTTTTTTTGCTCTGTTTCTTCATTACAAAGTGATTTCATGCACTTGAGAAATGGATTGCACCACTGTAAGTTACAGAGGGCTTTAGTTAATGTAATATATATGGGCTACAGACCATAGAAGGATCTACATAATACTACACACTTTTTTAAAAGAAACGAAAAGATAAGATAAGGGGAATATATTCAGTATCCTATAAACAGGAACTTATTCTTGACACAATGCTAAGAATGCACAGATTCTCACTACAATGAGAAAATGGAAAAAAGAAAAGAAAAAAAAACCCTCTCAGTCATGTTGTTCACACCCATTTCAGCTCGGTGAAGTTCTAAATGTTTTATCACCTAATATTCCAAAATTTGTTTGTCTCATCAAGGAAGAATCTTCCTGGAATGGCCCAAGCTCACCGCTAGTATATATTATCTTTTTTGAGCTTCCCCTCAAGATTTTTAAAACGCGTTTACTAGGGAGAGGTTTCCACACCCTTATAAAGAATGTTTCGTTCTCCTCCCCAATCGATGTGGGGCCTCACACTTTCACTTAGAAACTTCTGTGGGACCTCACACTCACTTGGACACCTCTAATCTTTGTTCTACTTTCTTGAAGAGTGGAGAATGTATGAACTTAGGTGTGAACATACTCTTCATCATGAATAGCAAGATTCTCTGTTAGGTAAAGTAAGCACTTTCTAAGCATATATAGGCAAGCAATATATGGGTTGTTCATTGAAGTAGTGAAACCTCACGGCCACTGATTTGTCTTTCTTCTGATGGCTTGTGAAGACGCAAAGAACAAAGAGTGCTGCCATGTAGCAGCAGATGTTCCAAACCAGCCTCAGCCATCAGGTTTTTTTCAACTCTTTTCTTGTGGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTAGATGGGGAAAGATTCTTATGTAAATCTTGTTTCAACTCACTTATCAGAAAAAAAGAGTTTTCGATGCCCACACACACAAAAGAAAGGGAACAGAAACTTCCTTGAAGGATGGTAAGTGTAGTTCTCAACCACTGTTCTTTCTTTCTGCAGTTTCATTGGTTACAAGTTTTGGTTCACTTTCGTAAGCACTCTTTCTGATTTAGTGTAAGAATTCAGGAAGACTGTCTTTTCATTGTGCAGATGCACATGGTTTTATCTGTTTACTGTGTGTTTCATAAACTAGTAGTGATTTTCAAAATTCTCTGCAGCATCTTTGCTTTGTGCTGTTGCTGGATTTGTGATGCTTGCTTTGATGTTAGTGTGACTGTGTGATTAACATCAGCAGCAGCAGGATTTACGCTATATGCATAGCCAACAGACAACTATCTAGCAATTTTACTGTTTAAGACATGACTGGATGACTCGTGTGATGTGATCTATCTCAAACCAAATATTAGCTGAACACTTTTTTCTCTTCATATTGTATTAGTTCTTCCAGAACTCAGGCAGCTGTTCATATTTTCTTGTGACTTCCAACCTTATAAGTTTGAAGTCAATGTAATGAGAAGTGAAAACATGTGTAATAGAGAAATTTTCTCATCCACAAATGGGTTACGCCTCACCAAGCCAAGAATGGAATTGATTATCCAAAGTATGTAAAGAACCAATCTAAAACGATTTGTTTTCTCGATTACGATGGTATAACCGAGCAATTACTGGATCATTGAGAAGCAGTTTAATGTCACCCAAGGCAGCCCAAATCTTGTGGTTTAGGAAATCTAGAACAAGACTGATGGAATAAAAGGACGA

mRNA sequence

ACAAGAGAGGTTCTTCTGTTCTTTCCTTTTTTTGCTCTGTTTCTTCATTACAAAGTGATTTCATGCACTTGAGAAATGGATTGCACCACTGTAAGTTACAGAGGGCTTTAGTTAATGTAATATATATGGGCTACAGACCATAGAAGGATCTACATAATACTACACACTTTTTTAAAAGAAACGAAAAGATAAGATAAGGGGAATATATTCAGTATCCTATAAACAGGAACTTATTCTTGACACAATGCTAAGAATGCACAGATTCTCACTACAATGAGAAAATGGAAAAAAGAAAAGAAAAAAAAACCCTCTCAGTCATGTTGTTCACACCCATTTCAGCTCGGTGAAGTTCTAAATGTTTTATCACCTAATATTCCAAAATTTGTTTGTCTCATCAAGGAAGAATCTTCCTGGAATGGCCCAAGCTCACCGCTAGTATATATTATCTTTTTTGAGCTTCCCCTCAAGATTTTTAAAACGCGTTTACTAGGGAGAGGTTTCCACACCCTTATAAAGAATGTTTCGTTCTCCTCCCCAATCGATGTGGGGCCTCACACTTTCACTTAGAAACTTCTGTGGGACCTCACACTCACTTGGACACCTCTAATCTTTGTTCTACTTTCTTGAAGAGTGGAGAATGTATGAACTTAGGTGTGAACATACTCTTCATCATGAATAGCAAGATTCTCTGTTAGGTAAAGTAAGCACTTTCTAAGCATATATAGGCAAGCAATATATGGGTTGTTCATTGAAGTAGTGAAACCTCACGGCCACTGATTTGTCTTTCTTCTGATGGCTTGTGAAGACGCAAAGAACAAAGAGTGCTGCCATGTAGCAGCAGATGTTCCAAACCAGCCTCAGCCATCAGAAAAAAAGAGTTTTCGATGCCCACACACACAAAAGAAAGGGAACAGAAACTTCCTTGAAGGATGCATCTTTGCTTTGTGCTGTTGCTGGATTTGTGATGCTTGCTTTGATGTTAGTGTGACTGTGTGATTAACATCAGCAGCAGCAGGATTTACGCTATATGCATAGCCAACAGACAACTATCTAGCAATTTTACTGTTTAAGACATGACTGGATGACTCGTGTGATGTGATCTATCTCAAACCAAATATTAGCTGAACACTTTTTTCTCTTCATATTGTATTAGTTCTTCCAGAACTCAGGCAGCTGTTCATATTTTCTTGTGACTTCCAACCTTATAAGTTTGAAGTCAATGTAATGAGAAGTGAAAACATGTGTAATAGAGAAATTTTCTCATCCACAAATGGGTTACGCCTCACCAAGCCAAGAATGGAATTGATTATCCAAAGTATGTAAAGAACCAATCTAAAACGATTTGTTTTCTCGATTACGATGGTATAACCGAGCAATTACTGGATCATTGAGAAGCAGTTTAATGTCACCCAAGGCAGCCCAAATCTTGTGGTTTAGGAAATCTAGAACAAGACTGATGGAATAAAAGGACGA

Coding sequence (CDS)

ATGGCTTGTGAAGACGCAAAGAACAAAGAGTGCTGCCATGTAGCAGCAGATGTTCCAAACCAGCCTCAGCCATCAGAAAAAAAGAGTTTTCGATGCCCACACACACAAAAGAAAGGGAACAGAAACTTCCTTGAAGGATGCATCTTTGCTTTGTGCTGTTGCTGGATTTGTGATGCTTGCTTTGATGTTAGTGTGACTGTGTGA
Homology
[Close]
BLAST of CmoCh04G014220.1 vs. TrEMBL
Match: B9SZT3_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1108230 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 6.4e-08
Identity = 27/48 (56.25%), Postives = 34/48 (70.83%), Query Frame = 1 

Query: 20 NQPQPS------EKKSFRCPHTQKKGNRNFLEGCIFALCCCWICDACF 62
          NQP P         K   CP+T+KKG+R F+EGC+FALCCCW+C+ACF
Sbjct: 9  NQPPPGYPTDTPTAKKKCCPNTKKKGDRGFIEGCLFALCCCWLCEACF 56

[Close]
BLAST of CmoCh04G014220.1 vs. TrEMBL
Match: A0A067H6R0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g035469mg PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.4e-07
Identity = 26/32 (81.25%), Postives = 31/32 (96.88%), Query Frame = 1 

Query: 35 TQKKGN-RNFLEGCIFALCCCWICDACFDVSV 66
          T+KKGN R+F+EGC+FALCCCWICDACFDV+V
Sbjct: 28 TKKKGNDRSFIEGCLFALCCCWICDACFDVTV 59

[Close]
BLAST of CmoCh04G014220.1 vs. TrEMBL
Match: V4VHQ6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033235mg PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.4e-07
Identity = 26/32 (81.25%), Postives = 31/32 (96.88%), Query Frame = 1 

Query: 35 TQKKGN-RNFLEGCIFALCCCWICDACFDVSV 66
          T+KKGN R+F+EGC+FALCCCWICDACFDV+V
Sbjct: 42 TKKKGNDRSFIEGCLFALCCCWICDACFDVTV 73

[Close]
BLAST of CmoCh04G014220.1 vs. TrEMBL
Match: D7LXF5_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_908293 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 5.4e-07
Identity = 28/50 (56.00%), Postives = 35/50 (70.00%), Query Frame = 1 

Query: 14 VAADVPNQP--QPSEKKSFRCPHTQKKGNRNFLEGCIFALCCCWICDACF 62
          VA  V  QP  +  +KK  R   T+KKG+R F+EGC+FALCCCWIC+ CF
Sbjct: 15 VAEQVSEQPGQEDKKKKKPRFFETKKKGDRGFIEGCLFALCCCWICEMCF 64

[Close]
BLAST of CmoCh04G014220.1 vs. TrEMBL
Match: K4BRF8_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 5.4e-07
Identity = 24/43 (55.81%), Postives = 34/43 (79.07%), Query Frame = 1 

Query: 22 PQPSEKKS--FRC-PHTQKKGNRNFLEGCIFALCCCWICDACF 62
          PQP+EKK+   +C P ++ KG R F+EGC+FA+CCCW+C+ CF
Sbjct: 18 PQPTEKKNKKMKCFPRSKPKGERGFIEGCLFAICCCWVCEVCF 60

[Close]
BLAST of CmoCh04G014220.1 vs. TAIR10
Match: AT5G04080.1 (AT5G04080.1 unknown protein)

HSP 1 Score: 59.7 bits (143), Expect = 8.0e-10
Identity = 27/48 (56.25%), Postives = 34/48 (70.83%), Query Frame = 1 

Query: 15 AADVPNQP-QPSEKKSFRCPHTQKKGNRNFLEGCIFALCCCWICDACF 62
          A  V  QP Q  +KK  R   T++KG+R F+EGC+FALCCCWIC+ CF
Sbjct: 16 AEQVSEQPGQDKKKKKPRFFETKQKGDRGFIEGCLFALCCCWICEMCF 63

[Close]
BLAST of CmoCh04G014220.1 vs. NCBI nr
Match: gi|223528889|gb|EEF30889.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 64.3 bits (155), Expect = 9.2e-08
Identity = 27/48 (56.25%), Postives = 34/48 (70.83%), Query Frame = 1 

Query: 20 NQPQPS------EKKSFRCPHTQKKGNRNFLEGCIFALCCCWICDACF 62
          NQP P         K   CP+T+KKG+R F+EGC+FALCCCW+C+ACF
Sbjct: 9  NQPPPGYPTDTPTAKKKCCPNTKKKGDRGFIEGCLFALCCCWLCEACF 56

[Close]
BLAST of CmoCh04G014220.1 vs. NCBI nr
Match: gi|567892727|ref|XP_006438884.1| (hypothetical protein CICLE_v10033235mg [Citrus clementina])

HSP 1 Score: 63.2 bits (152), Expect = 2.0e-07
Identity = 26/32 (81.25%), Postives = 31/32 (96.88%), Query Frame = 1 

Query: 35 TQKKGN-RNFLEGCIFALCCCWICDACFDVSV 66
          T+KKGN R+F+EGC+FALCCCWICDACFDV+V
Sbjct: 42 TKKKGNDRSFIEGCLFALCCCWICDACFDVTV 73

[Close]
BLAST of CmoCh04G014220.1 vs. NCBI nr
Match: gi|641864525|gb|KDO83211.1| (hypothetical protein CISIN_1g035469mg [Citrus sinensis])

HSP 1 Score: 63.2 bits (152), Expect = 2.0e-07
Identity = 26/32 (81.25%), Postives = 31/32 (96.88%), Query Frame = 1 

Query: 35 TQKKGN-RNFLEGCIFALCCCWICDACFDVSV 66
          T+KKGN R+F+EGC+FALCCCWICDACFDV+V
Sbjct: 28 TKKKGNDRSFIEGCLFALCCCWICDACFDVTV 59

[Close]
BLAST of CmoCh04G014220.1 vs. NCBI nr
Match: gi|764608852|ref|XP_011467336.1| (PREDICTED: cysteine-rich and transmembrane domain-containing protein A [Fragaria vesca subsp. vesca])

HSP 1 Score: 62.0 bits (149), Expect = 4.6e-07
Identity = 24/38 (63.16%), Postives = 31/38 (81.58%), Query Frame = 1 

Query: 24 PSEKKSFRCPHTQKKGNRNFLEGCIFALCCCWICDACF 62
          P  +K FR P T+KKG+R F+EGC+FALCCCW+C+ CF
Sbjct: 23 PPTRKKFR-PQTKKKGDRGFIEGCLFALCCCWLCEECF 59

[Close]
BLAST of CmoCh04G014220.1 vs. NCBI nr
Match: gi|297806383|ref|XP_002871075.1| (hypothetical protein ARALYDRAFT_908293 [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 61.2 bits (147), Expect = 7.8e-07
Identity = 28/50 (56.00%), Postives = 35/50 (70.00%), Query Frame = 1 

Query: 14 VAADVPNQP--QPSEKKSFRCPHTQKKGNRNFLEGCIFALCCCWICDACF 62
          VA  V  QP  +  +KK  R   T+KKG+R F+EGC+FALCCCWIC+ CF
Sbjct: 15 VAEQVSEQPGQEDKKKKKPRFFETKKKGDRGFIEGCLFALCCCWICEMCF 64

The following BLAST results are available for this feature:
BLAST of CmoCh04G014220.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh04G014220.1 vs. TrEMBL
Match NameE-valueIdentityDescription
B9SZT3_RICCO6.4e-0856.25Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1108230 PE=4 SV=1[more]
A0A067H6R0_CITSI1.4e-0781.25Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g035469mg PE=4 SV=1[more]
V4VHQ6_9ROSI1.4e-0781.25Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033235mg PE=4 SV=1[more]
D7LXF5_ARALL5.4e-0756.00Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRA... [more]
K4BRF8_SOLLC5.4e-0755.81Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
BLAST of CmoCh04G014220.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G04080.18.0e-1056.25 unknown protein[more]
BLAST of CmoCh04G014220.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|223528889|gb|EEF30889.1|9.2e-0856.25conserved hypothetical protein [Ricinus communis][more]
gi|567892727|ref|XP_006438884.1|2.0e-0781.25hypothetical protein CICLE_v10033235mg [Citrus clementina][more]
gi|641864525|gb|KDO83211.1|2.0e-0781.25hypothetical protein CISIN_1g035469mg [Citrus sinensis][more]
gi|764608852|ref|XP_011467336.1|4.6e-0763.16PREDICTED: cysteine-rich and transmembrane domain-containing protein A [Fragaria... [more]
gi|297806383|ref|XP_002871075.1|7.8e-0756.00hypothetical protein ARALYDRAFT_908293 [Arabidopsis lyrata subsp. lyrata][more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR028144CYSTM_dom
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmoCh04G014220CmoCh04G014220gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmoCh04G014220.1CmoCh04G014220.1-proteinpolypeptide


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh04G014220.1.three_prime_UTR.1CmoCh04G014220.1.three_prime_UTR.1three_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh04G014220.1.CDS.3CmoCh04G014220.1.CDS.3CDS
CmoCh04G014220.1.CDS.2CmoCh04G014220.1.CDS.2CDS
CmoCh04G014220.1.CDS.1CmoCh04G014220.1.CDS.1CDS


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh04G014220.1.five_prime_UTR.1CmoCh04G014220.1.five_prime_UTR.1five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh04G014220.1.exon.3CmoCh04G014220.1.exon.3exon
CmoCh04G014220.1.exon.2CmoCh04G014220.1.exon.2exon
CmoCh04G014220.1.exon.1CmoCh04G014220.1.exon.1exon


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR028144Cysteine-rich transmembrane CYSTM domainPFAMPF12734CYSTMcoord: 19..61
score: 7.4