Cla97C05G102490 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C05G102490
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	cysteine-rich and transmembrane domain-containing protein A
Location	Cla97Chr05 : 30732295 .. 30732731 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACGCGAAGACACAAGAAACAATGAGTGCTGCCATGTAGCAGATGCTCCAAACCAACCTCAGCCTCTGCCATCAGGTTTCTGATTTCTTTCTTACATGCTCCTAGTTTCAATAGAATGGTTGGAAAGAAGTTGAGGTAAATATTGTTTCGATTCGCTTATCAGGTAAAAAGAGTTTTCGATGCTCACATACACAAAAGAAAGGCAACAGAAGCTTCCTTGAAGGATGGTAAGTATAGTTCTTAACCAACAGGTATTTCTCTTTGCAGATACCAATATCGACATGTTTTTGTTCGATTTTGTAAACAGTTGCTGTCTTTTCCTGTTAAGTGTGTGTTTCATAAACTAATGGTTTTCAAAATTCTATGCAGCATCTTTGCTTTGTGCTGTTGTTGGATTTGTGATGCTTGCATTGATGTTAGTGTGACTGCATGA

mRNA sequence

ATGGCACGCGAAGACACAAGAAACAATGAGTGCTGCCATGTAGCAGATGCTCCAAACCAACCTCAGCCTCTGCCATCAGGTAAAAAGAGTTTTCGATGCTCACATACACAAAAGAAAGGCAACAGAAGCTTCCTTGAAGGATGCATCTTTGCTTTGTGCTGTTGTTGGATTTGTGATGCTTGCATTGATGTTAGTGTGACTGCATGA

Coding sequence (CDS)

ATGGCACGCGAAGACACAAGAAACAATGAGTGCTGCCATGTAGCAGATGCTCCAAACCAACCTCAGCCTCTGCCATCAGGTAAAAAGAGTTTTCGATGCTCACATACACAAAAGAAAGGCAACAGAAGCTTCCTTGAAGGATGCATCTTTGCTTTGTGCTGTTGTTGGATTTGTGATGCTTGCATTGATGTTAGTGTGACTGCATGA

Protein sequence

MAREDTRNNECCHVADAPNQPQPLPSGKKSFRCSHTQKKGNRSFLEGCIFALCCCWICDACIDVSVTA

Homology

[Close]

BLAST of Cla97C05G102490 vs. NCBI nr
Match: OAY36205.1 (hypothetical protein MANES_11G003500 [Manihot esculenta])

HSP 1 Score: 64.3 bits (155), Expect = 1.8e-07
Identity = 27/44 (61.36%), Postives = 34/44 (77.27%), Query Frame = 0


Query: 23 PLPSGKKSFRCSHTQKKGNRSFLEGCIFALCCCWICDACIDVSV 67
          PLP G +   C +++ KG+RSFLEGC+FALCCCWICD C D +V
Sbjct: 21 PLPVGIRKC-CPYSKPKGDRSFLEGCLFALCCCWICDLCFDTTV 63

[Close]

BLAST of Cla97C05G102490 vs. NCBI nr
Match: XP_006438884.1 (uncharacterized protein LOC18045490 [Citrus clementina] >XP_006482989.1 uncharacterized protein LOC102623457 [Citrus sinensis] >ESR52124.1 hypothetical protein CICLE_v10033235mg [Citrus clementina] >GAY36856.1 hypothetical protein CUMW_024970 [Citrus unshiu])

HSP 1 Score: 63.5 bits (153), Expect = 3.1e-07
Identity = 27/36 (75.00%), Postives = 32/36 (88.89%), Query Frame = 0


Query: 34 SHTQKKGN-RSFLEGCIFALCCCWICDACIDVSVTA 69
          + T+KKGN RSF+EGC+FALCCCWICDAC DV+V A
Sbjct: 40 ARTKKKGNDRSFIEGCLFALCCCWICDACFDVTVVA 75

[Close]

BLAST of Cla97C05G102490 vs. NCBI nr
Match: KDO83211.1 (hypothetical protein CISIN_1g035469mg [Citrus sinensis])

HSP 1 Score: 63.5 bits (153), Expect = 3.1e-07
Identity = 27/36 (75.00%), Postives = 32/36 (88.89%), Query Frame = 0


Query: 34 SHTQKKGN-RSFLEGCIFALCCCWICDACIDVSVTA 69
          + T+KKGN RSF+EGC+FALCCCWICDAC DV+V A
Sbjct: 26 ARTKKKGNDRSFIEGCLFALCCCWICDACFDVTVVA 61

[Close]

BLAST of Cla97C05G102490 vs. NCBI nr
Match: EEF30889.1 (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 62.8 bits (151), Expect = 5.3e-07
Identity = 25/44 (56.82%), Postives = 33/44 (75.00%), Query Frame = 0


Query: 18 PNQPQPLPSGKKSFRCSHTQKKGNRSFLEGCIFALCCCWICDAC 62
          P  P   P+ KK   C +T+KKG+R F+EGC+FALCCCW+C+AC
Sbjct: 13 PGYPTDTPTAKKKC-CPNTKKKGDRGFIEGCLFALCCCWLCEAC 55

[Close]

BLAST of Cla97C05G102490 vs. NCBI nr
Match: ESR34507.1 (hypothetical protein CICLE_v10006402mg [Citrus clementina])

HSP 1 Score: 61.6 bits (148), Expect = 1.2e-06
Identity = 30/58 (51.72%), Postives = 40/58 (68.97%), Query Frame = 0


Query: 5  DTRNNECCHVADAPNQPQPLPSGKKSFRC-SHTQKKGNRSFLEGCIFALCCCWICDAC 62
          +T NN+    A  P +  P   GKK  +C S T+KKG+R F+EGC+FALCCCW+C+AC
Sbjct: 6  ETENNQ--PPAGYPTENPPAGKGKK--KCLSQTKKKGDRGFIEGCLFALCCCWLCEAC 59

[Close]

BLAST of Cla97C05G102490 vs. TrEMBL
Match: tr|A0A2C9UYA0|A0A2C9UYA0_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_11G003500 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.2e-07
Identity = 27/44 (61.36%), Postives = 34/44 (77.27%), Query Frame = 0


Query: 23 PLPSGKKSFRCSHTQKKGNRSFLEGCIFALCCCWICDACIDVSV 67
          PLP G +   C +++ KG+RSFLEGC+FALCCCWICD C D +V
Sbjct: 21 PLPVGIRKC-CPYSKPKGDRSFLEGCLFALCCCWICDLCFDTTV 63

[Close]

BLAST of Cla97C05G102490 vs. TrEMBL
Match: tr|V4VHQ6|V4VHQ6_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10033235mg PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.0e-07
Identity = 27/36 (75.00%), Postives = 32/36 (88.89%), Query Frame = 0


Query: 34 SHTQKKGN-RSFLEGCIFALCCCWICDACIDVSVTA 69
          + T+KKGN RSF+EGC+FALCCCWICDAC DV+V A
Sbjct: 40 ARTKKKGNDRSFIEGCLFALCCCWICDACFDVTVVA 75

[Close]

BLAST of Cla97C05G102490 vs. TrEMBL
Match: tr|A0A2H5N9I6|A0A2H5N9I6_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_024970 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.0e-07
Identity = 27/36 (75.00%), Postives = 32/36 (88.89%), Query Frame = 0


Query: 34 SHTQKKGN-RSFLEGCIFALCCCWICDACIDVSVTA 69
          + T+KKGN RSF+EGC+FALCCCWICDAC DV+V A
Sbjct: 40 ARTKKKGNDRSFIEGCLFALCCCWICDACFDVTVVA 75

[Close]

BLAST of Cla97C05G102490 vs. TrEMBL
Match: tr|A0A067H6R0|A0A067H6R0_CITSI (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g035469mg PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.0e-07
Identity = 27/36 (75.00%), Postives = 32/36 (88.89%), Query Frame = 0


Query: 34 SHTQKKGN-RSFLEGCIFALCCCWICDACIDVSVTA 69
          + T+KKGN RSF+EGC+FALCCCWICDAC DV+V A
Sbjct: 26 ARTKKKGNDRSFIEGCLFALCCCWICDACFDVTVVA 61

[Close]

BLAST of Cla97C05G102490 vs. TrEMBL
Match: tr|B9SZT3|B9SZT3_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1108230 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.5e-07
Identity = 25/44 (56.82%), Postives = 33/44 (75.00%), Query Frame = 0


Query: 18 PNQPQPLPSGKKSFRCSHTQKKGNRSFLEGCIFALCCCWICDAC 62
          P  P   P+ KK   C +T+KKG+R F+EGC+FALCCCW+C+AC
Sbjct: 13 PGYPTDTPTAKKKC-CPNTKKKGDRGFIEGCLFALCCCWLCEAC 55

[Close]

BLAST of Cla97C05G102490 vs. TAIR10
Match: AT5G04080.1 (unknown protein)

HSP 1 Score: 54.7 bits (130), Expect = 2.6e-08
Identity = 24/48 (50.00%), Postives = 33/48 (68.75%), Query Frame = 0


Query: 14 VADAPNQPQPLPSGKKSFRCSHTQKKGNRSFLEGCIFALCCCWICDAC 62
          V++ P Q +     KK  R   T++KG+R F+EGC+FALCCCWIC+ C
Sbjct: 19 VSEQPGQDKK----KKKPRFFETKQKGDRGFIEGCLFALCCCWICEMC 62

The following BLAST results are available for this feature:

BLAST of Cla97C05G102490 vs. NCBI nr


Match Name	E-value	Identity	Description
OAY36205.1	1.8e-07	61.36	hypothetical protein MANES_11G003500 [Manihot esculenta]	[more]
XP_006438884.1	3.1e-07	75.00	uncharacterized protein LOC18045490 [Citrus clementina] >XP_006482989.1 uncharac...	[more]
KDO83211.1	3.1e-07	75.00	hypothetical protein CISIN_1g035469mg [Citrus sinensis]	[more]
EEF30889.1	5.3e-07	56.82	conserved hypothetical protein [Ricinus communis]	[more]
ESR34507.1	1.2e-06	51.72	hypothetical protein CICLE_v10006402mg [Citrus clementina]	[more]

BLAST of Cla97C05G102490 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2C9UYA0\|A0A2C9UYA0_MANES	1.2e-07	61.36	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_11G003500 PE=4 SV=...	[more]
tr\|V4VHQ6\|V4VHQ6_9ROSI	2.0e-07	75.00	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10033235mg PE=4 ...	[more]
tr\|A0A2H5N9I6\|A0A2H5N9I6_CITUN	2.0e-07	75.00	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_024970 PE=4 SV=1	[more]
tr\|A0A067H6R0\|A0A067H6R0_CITSI	2.0e-07	75.00	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g035469mg PE=4 SV=1	[more]
tr\|B9SZT3\|B9SZT3_RICCO	3.5e-07	56.82	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1108230 PE=4 SV=1	[more]

BLAST of Cla97C05G102490 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C05G102490 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G04080.1	2.6e-08	50.00	unknown protein	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR028144	CYSTM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005544	calcium-dependent phospholipid binding
molecular_function	GO:0005509	calcium ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C05G102490.1	Cla97C05G102490.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR028144	Cysteine-rich transmembrane CYSTM domain	PFAM	PF12734	CYSTM	coord: 19..61 e-value: 1.4E-12 score: 47.6
None	No IPR available	PANTHER	PTHR31568:SF9	SUBFAMILY NOT NAMED	coord: 27..62
None	No IPR available	PANTHER	PTHR31568	FAMILY NOT NAMED	coord: 27..62

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C05G102490	Cla020587	Watermelon (97103) v1	wmwmbB207
Cla97C05G102490	ClCG05G020750	Watermelon (Charleston Gray)	wcgwmbB229
Cla97C05G102490	CmaCh04G013470	Cucurbita maxima (Rimu)	cmawmbB758
Cla97C05G102490	CmoCh04G014220	Cucurbita moschata (Rifu)	cmowmbB729
Cla97C05G102490	Lsi04G000460	Bottle gourd (USVL1VR-Ls)	lsiwmbB284

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C05G102490	Wax gourd	wgowmbB532
Cla97C05G102490	Silver-seed gourd	carwmbB0507
Cla97C05G102490	Silver-seed gourd	carwmbB0878
Cla97C05G102490	Cucumber (Gy14) v2	cgybwmbB365
Cla97C05G102490	Cucurbita maxima (Rimu)	cmawmbB423
Cla97C05G102490	Cucumber (Gy14) v1	cgywmbB533
Cla97C05G102490	Cucurbita moschata (Rifu)	cmowmbB403
Cla97C05G102490	Wild cucumber (PI 183967)	cpiwmbB402
Cla97C05G102490	Cucumber (Chinese Long) v3	cucwmbB398
Cla97C05G102490	Cucumber (Chinese Long) v2	cuwmbB383
Cla97C05G102490	Melon (DHL92) v3.6.1	medwmbB056
Cla97C05G102490	Melon (DHL92) v3.5.1	mewmbB060