Cla020587 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla020587
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1); contains Interpro domain(s) IPR012614 Small acid-soluble spore protein, SspP
Location	Chr5 : 28450733 .. 28451169 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACGCGAAGACACAAGAAACAATGAGTGCTGCCATGTAGCAGATGCTCCAAACCAACCTCAGCCTCTGCCATCAGGTTTCTGATTTCTTTCTTACATGCTCCTAGTTTCAATAGAATGGTTGGAAAGAAGTTGAGGTAAATATTGTTTCGATTCGCTTATCAGGTAAAAAGAGTTTTCGATGCTCACATACACAAAAGAAAGGCAACAGAAGCTTCCTTGAAGGATGGTAAGTATAGTTCTTAACCAACAGGTATTTCTCTTTGCAGATACCAATATCGACATGTTTTTGTTCGATTTTGTAAACAGTTGCTGTCTTTTCCTGTTAAGTGTGTGTTTCATAAACTAATGGTTTTCAAAATTCTATGCAGCATCTTTGCTTTGTGCTGTTGTTGGATTTGTGATGCTTGCATTGATGTTAGTGTGACTGCATGA

mRNA sequence

ATGGCACGCGAAGACACAAGAAACAATGAGTGCTGCCATGTAGCAGATGCTCCAAACCAACCTCAGCCTCTGCCATCAGGTAAAAAGAGTTTTCGATGCTCACATACACAAAAGAAAGGCAACAGAAGCTTCCTTGAAGGATGCATCTTTGCTTTGTGCTGTTGTTGGATTTGTGATGCTTGCATTGATGTTAGTGTGACTGCATGA

Coding sequence (CDS)

ATGGCACGCGAAGACACAAGAAACAATGAGTGCTGCCATGTAGCAGATGCTCCAAACCAACCTCAGCCTCTGCCATCAGGTAAAAAGAGTTTTCGATGCTCACATACACAAAAGAAAGGCAACAGAAGCTTCCTTGAAGGATGCATCTTTGCTTTGTGCTGTTGTTGGATTTGTGATGCTTGCATTGATGTTAGTGTGACTGCATGA

Protein sequence

MAREDTRNNECCHVADAPNQPQPLPSGKKSFRCSHTQKKGNRSFLEGCIFALCCCWICDACIDVSVTA

Homology

[Close]

BLAST of Cla020587 vs. TrEMBL
Match: A0A067H6R0_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g035469mg PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.2e-08
Identity = 27/36 (75.00%), Postives = 32/36 (88.89%), Query Frame = 1


Query: 34 SHTQKKGN-RSFLEGCIFALCCCWICDACIDVSVTA 69
          + T+KKGN RSF+EGC+FALCCCWICDAC DV+V A
Sbjct: 26 ARTKKKGNDRSFIEGCLFALCCCWICDACFDVTVVA 61

[Close]

BLAST of Cla020587 vs. TrEMBL
Match: B9SZT3_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1108230 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.2e-08
Identity = 25/44 (56.82%), Postives = 33/44 (75.00%), Query Frame = 1


Query: 18 PNQPQPLPSGKKSFRCSHTQKKGNRSFLEGCIFALCCCWICDAC 62
          P  P   P+ KK   C +T+KKG+R F+EGC+FALCCCW+C+AC
Sbjct: 13 PGYPTDTPTAKKKC-CPNTKKKGDRGFIEGCLFALCCCWLCEAC 55

[Close]

BLAST of Cla020587 vs. TrEMBL
Match: V4VHQ6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033235mg PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.2e-08
Identity = 27/36 (75.00%), Postives = 32/36 (88.89%), Query Frame = 1


Query: 34 SHTQKKGN-RSFLEGCIFALCCCWICDACIDVSVTA 69
          + T+KKGN RSF+EGC+FALCCCWICDAC DV+V A
Sbjct: 40 ARTKKKGNDRSFIEGCLFALCCCWICDACFDVTVVA 75

[Close]

BLAST of Cla020587 vs. TrEMBL
Match: V4S2H5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006402mg PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 3.8e-08
Identity = 30/58 (51.72%), Postives = 40/58 (68.97%), Query Frame = 1


Query: 5  DTRNNECCHVADAPNQPQPLPSGKKSFRC-SHTQKKGNRSFLEGCIFALCCCWICDAC 62
          +T NN+    A  P +  P   GKK  +C S T+KKG+R F+EGC+FALCCCW+C+AC
Sbjct: 6  ETENNQ--PPAGYPTENPPAGKGKK--KCLSQTKKKGDRGFIEGCLFALCCCWLCEAC 59

[Close]

BLAST of Cla020587 vs. TrEMBL
Match: A0A0B2R9Y8_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_025861 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 7.2e-07
Identity = 26/61 (42.62%), Postives = 38/61 (62.30%), Query Frame = 1


Query: 1  MAREDTRNNECCHVADAPNQPQPLPSGKKSFRCSHTQKKGNRSFLEGCIFALCCCWICDA 60
          M + +T+ N+       P  P   P  K+ F  S T+K+G+R F+EGC+FALCCCW+C+ 
Sbjct: 1  MQKPETQGNQ-----PPPGYPTENPPAKRKF-FSGTKKRGDRGFIEGCLFALCCCWLCEE 55

Query: 61 C 62
          C
Sbjct: 61 C 55

[Close]

BLAST of Cla020587 vs. NCBI nr
Match: gi|223528889|gb|EEF30889.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 65.9 bits (159), Expect = 3.2e-08
Identity = 25/44 (56.82%), Postives = 33/44 (75.00%), Query Frame = 1


Query: 18 PNQPQPLPSGKKSFRCSHTQKKGNRSFLEGCIFALCCCWICDAC 62
          P  P   P+ KK   C +T+KKG+R F+EGC+FALCCCW+C+AC
Sbjct: 13 PGYPTDTPTAKKKC-CPNTKKKGDRGFIEGCLFALCCCWLCEAC 55

[Close]

BLAST of Cla020587 vs. NCBI nr
Match: gi|641864525|gb|KDO83211.1| (hypothetical protein CISIN_1g035469mg [Citrus sinensis])

HSP 1 Score: 65.9 bits (159), Expect = 3.2e-08
Identity = 27/36 (75.00%), Postives = 32/36 (88.89%), Query Frame = 1


Query: 34 SHTQKKGN-RSFLEGCIFALCCCWICDACIDVSVTA 69
          + T+KKGN RSF+EGC+FALCCCWICDAC DV+V A
Sbjct: 26 ARTKKKGNDRSFIEGCLFALCCCWICDACFDVTVVA 61

[Close]

BLAST of Cla020587 vs. NCBI nr
Match: gi|567892727|ref|XP_006438884.1| (hypothetical protein CICLE_v10033235mg [Citrus clementina])

HSP 1 Score: 65.9 bits (159), Expect = 3.2e-08
Identity = 27/36 (75.00%), Postives = 32/36 (88.89%), Query Frame = 1


Query: 34 SHTQKKGN-RSFLEGCIFALCCCWICDACIDVSVTA 69
          + T+KKGN RSF+EGC+FALCCCWICDAC DV+V A
Sbjct: 40 ARTKKKGNDRSFIEGCLFALCCCWICDACFDVTVVA 75

[Close]

BLAST of Cla020587 vs. NCBI nr
Match: gi|567857168|ref|XP_006421267.1| (hypothetical protein CICLE_v10006402mg [Citrus clementina])

HSP 1 Score: 65.1 bits (157), Expect = 5.5e-08
Identity = 30/58 (51.72%), Postives = 40/58 (68.97%), Query Frame = 1


Query: 5  DTRNNECCHVADAPNQPQPLPSGKKSFRC-SHTQKKGNRSFLEGCIFALCCCWICDAC 62
          +T NN+    A  P +  P   GKK  +C S T+KKG+R F+EGC+FALCCCW+C+AC
Sbjct: 6  ETENNQ--PPAGYPTENPPAGKGKK--KCLSQTKKKGDRGFIEGCLFALCCCWLCEAC 59

[Close]

BLAST of Cla020587 vs. NCBI nr
Match: gi|694445211|ref|XP_009349066.1| (PREDICTED: cysteine-rich and transmembrane domain-containing protein A [Pyrus x bretschneideri])

HSP 1 Score: 62.8 bits (151), Expect = 2.7e-07
Identity = 30/62 (48.39%), Postives = 40/62 (64.52%), Query Frame = 1


Query: 1  MAREDTRNNECCH-VADAPNQPQPLPSGKKSFRCSHTQKKGNRSFLEGCIFALCCCWICD 60
          MA+ +T+ N+       A   P P P+GKK FR   T+ KG R F+EGC+FALCCCW+C+
Sbjct: 1  MAKTETQENQPPPGYPTATENPPPSPTGKK-FR-PRTKAKGERGFIEGCLFALCCCWLCE 60

Query: 61 AC 62
           C
Sbjct: 61 EC 60

The following BLAST results are available for this feature:

BLAST of Cla020587 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A067H6R0_CITSI	2.2e-08	75.00	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g035469mg PE=4 SV=1	[more]
B9SZT3_RICCO	2.2e-08	56.82	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1108230 PE=4 SV=1	[more]
V4VHQ6_9ROSI	2.2e-08	75.00	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033235mg PE=4 SV=1	[more]
V4S2H5_9ROSI	3.8e-08	51.72	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006402mg PE=4 SV=1	[more]
A0A0B2R9Y8_GLYSO	7.2e-07	42.62	Uncharacterized protein OS=Glycine soja GN=glysoja_025861 PE=4 SV=1	[more]

BLAST of Cla020587 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|223528889\|gb\|EEF30889.1\|	3.2e-08	56.82	conserved hypothetical protein [Ricinus communis]	[more]
gi\|641864525\|gb\|KDO83211.1\|	3.2e-08	75.00	hypothetical protein CISIN_1g035469mg [Citrus sinensis]	[more]
gi\|567892727\|ref\|XP_006438884.1\|	3.2e-08	75.00	hypothetical protein CICLE_v10033235mg [Citrus clementina]	[more]
gi\|567857168\|ref\|XP_006421267.1\|	5.5e-08	51.72	hypothetical protein CICLE_v10006402mg [Citrus clementina]	[more]
gi\|694445211\|ref\|XP_009349066.1\|	2.7e-07	48.39	PREDICTED: cysteine-rich and transmembrane domain-containing protein A [Pyrus x ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR028144	CYSTM_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005544	calcium-dependent phospholipid binding
molecular_function	GO:0005509	calcium ion binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU41579	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla020587	Cla020587.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU41579	WMU41579	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR028144	Cysteine-rich transmembrane CYSTM domain	PFAM	PF12734	CYSTM	coord: 20..61 score: 8.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla020587	Cla97C05G102490	Watermelon (97103) v2	wmwmbB207
Cla020587	ClCG05G020750	Watermelon (Charleston Gray)	wcgwmB285
Cla020587	CmaCh04G013470	Cucurbita maxima (Rimu)	cmawmB699
Cla020587	CmoCh04G014220	Cucurbita moschata (Rifu)	cmowmB693
Cla020587	Lsi04G000460	Bottle gourd (USVL1VR-Ls)	lsiwmB312
Cla020587	Cp4.1LG01g15000	Cucurbita pepo (Zucchini)	cpewmB427

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla020587	Cucurbita pepo (Zucchini)	cpewmB031
Cla020587	Cucumber (Gy14) v2	cgybwmB377
Cla020587	Melon (DHL92) v3.6.1	medwmB061
Cla020587	Silver-seed gourd	carwmB0480
Cla020587	Silver-seed gourd	carwmB0842
Cla020587	Cucumber (Chinese Long) v3	cucwmB428
Cla020587	Wax gourd	wgowmB552
Cla020587	Cucumber (Gy14) v1	cgywmB559
Cla020587	Cucurbita maxima (Rimu)	cmawmB372
Cla020587	Cucurbita moschata (Rifu)	cmowmB365
Cla020587	Melon (DHL92) v3.5.1	mewmB061
Cla020587	Cucumber (Chinese Long) v2	cuwmB401