CmoCh04G011290 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G011290
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Chalcone-flavonone isomerase family protein
Location	Cmo_Chr04 : 5767999 .. 5770652 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CGCCAGACCAAACAAGTCGCGGCCCGTGTCCTTTCTGCGCTACCTACTCTGCTCTGCCTCGGCATAGACATCGACATCGACATCGACGGAGTCCTATTTATAGCGTCTAATTCCAACTCCATGATCTCACATCCTTCACCGTCAAGCCTATTACCGCTCTGCCGCTGAAGAACTAACTTCCTTTCGTTTCTTCATCTGTTTTCCTTTCCCATCACGATCGCGATCAGTAAGGCCTTCTCTCCTTCTTTCTGTTCTCGTTTTCGTGCCTCTCAACTGTTTGTGTTAATGTTTCAATGAAAAACTGCAGCGATTTCACTTGAAAATAGACTCTATTCTGCTAGATTTGGGCATTTTGTTTGTCTGAATTCGATAGATTGATCGATTTGTTGCGTTTTGTGTATCTGAACTTAGGATTTTCTTTTTCTTTCTTTTGATTTGTGCGTTGGCGTTGGAATTTTGTGAACAGTGGGGAGTGAAGTGGAAGTGGTAGCGGACATTGCTTTCCCTAACCAGATCGTTAAGAACAAGCCGTTGTCTCTGTTGGGTCATGGTGAGTCCATACTTCTTCATTTTTAATATCTTTTTTCGCTATATTACAAAATATGATGAGAATAATATTATCCAAACTTTTAAAGAATTTATATTTCACTAATATTTTTGAAACATTTATACCACTTTTAAGAAAATATTAGTATTTTAAAAGAATATAGAAATATAAATTAAGGATTTAGAACTCCTTTTTAACTTATGAGATGGTTATCGATGCTTTAATTGTGTGATCTCTATAATTTTGAAAGTATTATTTTATTTTTAATTATAAATATAAAAAAAATATATTAATATTACTGATAGATAAGTCAAAAGTGAAATATTTTTGAAAGAGATGTGATAGAGATATATCATGATTTAGCCATTCAAGCTTTTGTGGTTTTTTTGTTTGTTATTAATTATTTTTTAGTTTTTCATTTTTTTAAAAAATTAGAGAGATGAAGAAAGGTTTAGAACAGAGGCATGGAAATAATAGTTCAGATACATTAAGATTTTAAAAAATGACTCTGTTAAATCACTAATAGCGAAGTTCGTGGATATATTACAGGAATTATCGACCTCGAGATTCACTTTCTACAAATAAAATTCACGGCCATTGGAGTTTATCTGGAGCCTGCGATTGTGGAGCATTTGAAGCAATGGAAGGGAAACGCAGCTGAGGACTTGCTGAAAGATGATGACTTCTTTGAGGCCATTGTTTCTGGTATCTCCCTAATTTTCCTATTTAACTATATACACCAATTATAATACTAAAAGTAATGCAAAAAAAAACGAGTATAATTTAGCTAGTTGGTCGAGCAATAGTTTTTGGTATAATAAAATGGACAAGTTGATCTATGCAAGTAGTCGAGAATGTTAGATGAACACGACTCTCCATAATGGTATGATATGCTCCACTTTGAGCATAAGCTTTCGTTGCTCCCAAAAGATCTCACACTAGTTGAGAGAGTGAGTATTCCTTGATTATAACCCATGATCATTCTCTAAATTAGCCAACGTGGACTTTCATCCAACACCTCCTCTCGAACAAAGTACGTCTCTTTTTTTTTTGGAGTCTTAGTCATTTTTTACTATACCTTCCAGGGGCCTCGACTTTTGGAGTCATTTGTTCGACGTTTGGGGATTCTATTGACATGGCTAATTTAGGGCATGGCTCTGATACCATGTTATATGAACACGACTCTCCACAATAGTATGATATAGTCCACTTTGAGCATAAACTCTCGTGGCTTTGTTTTGGGTTTCTCCAAAAGGCCTCACATCGATGGAGAGAGTATTCTTTGATTATAAATCCATGATCATTCCCTAAATTAGCTAATGTGAGACTTTCATCAAATAGGGAAGTTGTTTGATGAGTGTTTTTGTTTTCAAAACTTCTCATGATTGTCGTGAGCGTTGAAATCTGGATGAGTTGATCTATGTAAAGATTCGAAAAGTTGTATGGTGCGTGTTCTTGTTTTTGAAATATCTCATAAAAGTTAAAAGGATATTTTGAAAGCAGATTCCAAACAAGATGTTGTGTTTTATGTTCTTGATTTGCTTTCTTATGTTCATATACTCCTCTTTATTTTCGACTCGTAACATGAATCGGGAAACCTAAACCTTAAACGCTCGAGTGAATTTGAATGGTTACAGCTCCAGTGGAGAAGGCTATAAGAGTTGTGGTGATCAAAGAGATCAAAGGGGCACAATATGGGTTGCAGTTGGAGAATGCAGTTAGGGATAGATTGGCTGCCGATGACAAATACGAGGAAGAAGAAGAAGCTCAGCTGGAAAAAGTTGTTGAATTCTTTCGGTCCAAATACTTGAGCTCCCATTCTGTTATAAGTTTCCATTTCCCATCAGCTCCGACCATAGCTGAGGTAACAAACTTCAACTAAACCCGAACAATTAGATTGGATCACATAGTTTCTGAAAAATTGTATGTTTTATATTCGTTGCAGATTGAGTTTTTGAGCGATGAGAAAGAGGGGTCGAAGATGAAAGTAGAGAATGGGAATGTGGTTGAGATGATTAAGAAATGGTACCTGGGAGGGACTAGAGGTGCGTCTCAAACAACCATATCTTCATTGGCTAAGAATCTTGCCATTGAGTTATCTAAATGA

mRNA sequence

CGCCAGACCAAACAAGTCGCGGCCCGTGTCCTTTCTGCGCTACCTACTCTGCTCTGCCTCGGCATAGACATCGACATCGACATCGACGGAGTCCTATTTATAGCGTCTAATTCCAACTCCATGATCTCACATCCTTCACCGTCAAGCCTATTACCGCTCTGCCGCTGAAGAACTAACTTCCTTTCGTTTCTTCATCTGTTTTCCTTTCCCATCACGATCGCGATCATGGGGAGTGAAGTGGAAGTGGTAGCGGACATTGCTTTCCCTAACCAGATCGTTAAGAACAAGCCGTTGTCTCTGTTGGGTCATGGAATTATCGACCTCGAGATTCACTTTCTACAAATAAAATTCACGGCCATTGGAGTTTATCTGGAGCCTGCGATTGTGGAGCATTTGAAGCAATGGAAGGGAAACGCAGCTGAGGACTTGCTGAAAGATGATGACTTCTTTGAGGCCATTGTTTCTGGTATCTCCCTAATTTTCCTATTTAACTATATACACCAATTATAATACTAAAAGTAATGCAAAAAAAAACGAGTATAATTTAGCTAGTTGGTCGAGCAATAGTTTTTGGTATAATAAAATGGACAAGTTGATCTATGCAAGTAGTCGAGAATGTTAGATGAACACGACTCTCCATAATGGTATGATATGCTCCACTTTGAGCATAAGCTTTCGTTGCTCCCAAAAGATCTCACACTAGTTGAGAGAGTGAGTATTCCTTGATTATAACCCATGATCATTCTCTAAATTAGCCAACGTGGACTTTCATCCAACACCTCCTCTCGAACAAAGTACGTCTCTTTTTTTTTTGGAGTCTTAGTCATTTTTTACTATACCTTCCAGGGGCCTCGACTTTTGGAGTCATTTGTTCGACGTTTGGGGATTCTATTGACATGGCTAATTTAGGGCATGGCTCTGATACCATGTTATATGAACACGACTCTCCACAATAGTATGATATAGTCCACTTTGAGCATAAACTCTCGTGGCTTTGTTTTGGGTTTCTCCAAAAGGCCTCACATCGATGGAGAGAGTATTCTTTGATTATAAATCCATGATCATTCCCTAAATTAGCTAATGTGAGACTTTCATCAAATAGGGAAGTTGTTTGATGAGTGTTTTTGTTTTCAAAACTTCTCATGATTGTCGTGAGCGTTGAAATCTGGATGAGTTGATCTATGTAAAGATTCGAAAAGTTGTATGGTGCGTGTTCTTGTTTTTGAAATATCTCATAAAAGTTAAAAGGATATTTTGAAAGCAGATTCCAAACAAGATGTTGTGTTTTATGTTCTTGATTTGCTTTCTTATGTTCATATACTCCTCTTTATTTTCGACTCGTAACATGAATCGGGAAACCTAAACCTTAAACGCTCGAGTGAATTTGAATGGTTACAGCTCCAGTGGAGAAGGCTATAAGAGTTGTGGTGATCAAAGAGATCAAAGGGGCACAATATGGGTTGCAGTTGGAGAATGCAGTTAGGGATAGATTGGCTGCCGATGACAAATACGAGGAAGAAGAAGAAGCTCAGCTGGAAAAAGTTGTTGAATTCTTTCGGTCCAAATACTTGAGCTCCCATTCTGTTATAAGTTTCCATTTCCCATCAGCTCCGACCATAGCTGAGATTGAGTTTTTGAGCGATGAGAAAGAGGGGTCGAAGATGAAAGTAGAGAATGGGAATGTGGTTGAGATGATTAAGAAATGGTACCTGGGAGGGACTAGAGGTGCGTCTCAAACAACCATATCTTCATTGGCTAAGAATCTTGCCATTGAGTTATCTAAATGA

Coding sequence (CDS)

ATGGTTACAGCTCCAGTGGAGAAGGCTATAAGAGTTGTGGTGATCAAAGAGATCAAAGGGGCACAATATGGGTTGCAGTTGGAGAATGCAGTTAGGGATAGATTGGCTGCCGATGACAAATACGAGGAAGAAGAAGAAGCTCAGCTGGAAAAAGTTGTTGAATTCTTTCGGTCCAAATACTTGAGCTCCCATTCTGTTATAAGTTTCCATTTCCCATCAGCTCCGACCATAGCTGAGATTGAGTTTTTGAGCGATGAGAAAGAGGGGTCGAAGATGAAAGTAGAGAATGGGAATGTGGTTGAGATGATTAAGAAATGGTACCTGGGAGGGACTAGAGGTGCGTCTCAAACAACCATATCTTCATTGGCTAAGAATCTTGCCATTGAGTTATCTAAATGA

Homology

[Close]

BLAST of CmoCh04G011290 vs. Swiss-Prot
Match: CFI3_ARATH (Probable chalcone--flavonone isomerase 3 OS=Arabidopsis thaliana GN=CHI3 PE=1 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 5.4e-36
Identity = 78/131 (59.54%), Postives = 103/131 (78.63%), Query Frame = 1


Query: 1   MVTAPVEKAIRVVVIKEIKGAQYGLQLENAVRDRLAADDKYEEEEEAQLEKVVEFFRSKY 60
           + +A +EK IRVVVIKEIKGAQYG+QLEN VRDRLA +DKYEEEEE +LEKVV FF+SKY
Sbjct: 79  LASAEMEKVIRVVVIKEIKGAQYGVQLENTVRDRLAEEDKYEEEEETELEKVVGFFQSKY 138

Query: 61  LSSHSVISFHFPSAPTIAEIEFLSDEKEGSKMKVENGNVVEMIKKWYLGGTRGASQTTIS 120
             ++SVI++HF +   I EI F ++ KE  K+KVEN NVV M+++WYL G+RG S +TI 
Sbjct: 139 FKANSVITYHFSAKDGICEIGFETEGKEEEKLKVENANVVGMMQRWYLSGSRGVSPSTIV 198

Query: 121 SLAKNLAIELS 132
           S+A +++  L+
Sbjct: 199 SIADSISAVLT 209

[Close]

BLAST of CmoCh04G011290 vs. TrEMBL
Match: A0A0A0KPA3_CUCSA (Chalcone-flavonone isomerase family protein OS=Cucumis sativus GN=Csa_5G221960 PE=3 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 1.5e-53
Identity = 112/132 (84.85%), Postives = 123/132 (93.18%), Query Frame = 1


Query: 1   MVTAPVEKAIRVVVIKEIKGAQYGLQLENAVRDRLAADDKYEEEEEAQLEKVVEFFRSKY 60
           +++APVEK IRVVVIKEIKG+QYG+QLE+AVRDRLAADDKYE+EEEAQLEK+VEFF+SKY
Sbjct: 111 IISAPVEKVIRVVVIKEIKGSQYGVQLESAVRDRLAADDKYEDEEEAQLEKIVEFFQSKY 170

Query: 61  LSSHSVISFHFPSAPTIAEIEFLSDEKEGSKMKVENGNVVEMIKKWYLGGTRGASQTTIS 120
           L +HSVI+FHFP A TIAEIEF SDEKE SKMKVENGNVVEMIKKWYLGGTRG SQ TIS
Sbjct: 171 LKTHSVINFHFPPASTIAEIEFSSDEKEESKMKVENGNVVEMIKKWYLGGTRGVSQPTIS 230

Query: 121 SLAKNLAIELSK 133
           SLA NLAIELSK
Sbjct: 231 SLANNLAIELSK 242

[Close]

BLAST of CmoCh04G011290 vs. TrEMBL
Match: A0A067JNS6_JATCU (Chalcone-flavonone isomerase family protein OS=Jatropha curcas GN=JCGZ_03321 PE=3 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 1.1e-43
Identity = 95/132 (71.97%), Postives = 110/132 (83.33%), Query Frame = 1


Query: 1   MVTAPVEKAIRVVVIKEIKGAQYGLQLENAVRDRLAADDKYEEEEEAQLEKVVEFFRSKY 60
           ++ APVEK +RVVVIKEIKG+QYG+QLE+AVRDRLAADDKYEEEEE  LEKVVEFF+SKY
Sbjct: 83  LIAAPVEKFLRVVVIKEIKGSQYGVQLESAVRDRLAADDKYEEEEEEALEKVVEFFQSKY 142

Query: 61  LSSHSVISFHFPSAPTIAEIEFLSDEKEGSKMKVENGNVVEMIKKWYLGGTRGASQTTIS 120
               S+I+FHFP+    AEI F ++ KE SK+KVEN NVVEMIKKWYLGGTRG S TTI+
Sbjct: 143 FKKDSIITFHFPATSPTAEIAFSTEGKEESKLKVENANVVEMIKKWYLGGTRGVSATTIT 202

Query: 121 SLAKNLAIELSK 133
           SLA  L+ ELSK
Sbjct: 203 SLANTLSAELSK 214

[Close]

BLAST of CmoCh04G011290 vs. TrEMBL
Match: A0A0D2VU95_GOSRA (Chalcone-flavonone isomerase family protein OS=Gossypium raimondii GN=B456_012G014600 PE=3 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 9.3e-43
Identity = 94/132 (71.21%), Postives = 109/132 (82.58%), Query Frame = 1


Query: 1   MVTAPVEKAIRVVVIKEIKGAQYGLQLENAVRDRLAADDKYEEEEEAQLEKVVEFFRSKY 60
           ++ APVEK +RVVVIKEIKG+QYG+QLE+AVRDRLAADDKYEEEEE  LEKVVEFF+SKY
Sbjct: 74  LINAPVEKFLRVVVIKEIKGSQYGVQLESAVRDRLAADDKYEEEEEEALEKVVEFFQSKY 133

Query: 61  LSSHSVISFHFPSAPTIAEIEFLSDEKEGSKMKVENGNVVEMIKKWYLGGTRGASQTTIS 120
               SVI++HFP+    AEI F ++ KE +K+KVEN NVVEMIKKWYLGGTRG S TTIS
Sbjct: 134 FKKDSVITYHFPANSATAEIAFTTEGKEEAKIKVENANVVEMIKKWYLGGTRGVSATTIS 193

Query: 121 SLAKNLAIELSK 133
           SLA  L+ EL K
Sbjct: 194 SLANTLSAELCK 205

[Close]

BLAST of CmoCh04G011290 vs. TrEMBL
Match: D6N3G6_GOSHI (Chalcone-flavonone isomerase family protein OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 9.3e-43
Identity = 94/132 (71.21%), Postives = 109/132 (82.58%), Query Frame = 1


Query: 1   MVTAPVEKAIRVVVIKEIKGAQYGLQLENAVRDRLAADDKYEEEEEAQLEKVVEFFRSKY 60
           ++ APVEK +RVVVIKEIKG+QYG+QLE+AVRDRLAADDKYEEEEE  LEKVVEFF+SKY
Sbjct: 78  LINAPVEKFLRVVVIKEIKGSQYGVQLESAVRDRLAADDKYEEEEEEALEKVVEFFQSKY 137

Query: 61  LSSHSVISFHFPSAPTIAEIEFLSDEKEGSKMKVENGNVVEMIKKWYLGGTRGASQTTIS 120
               SVI++HFP+    AEI F ++ KE +K+KVEN NVVEMIKKWYLGGTRG S TTIS
Sbjct: 138 FKKDSVITYHFPANSATAEIAFTTEGKEEAKIKVENANVVEMIKKWYLGGTRGVSATTIS 197

Query: 121 SLAKNLAIELSK 133
           SLA  L+ EL K
Sbjct: 198 SLANTLSAELCK 209

[Close]

BLAST of CmoCh04G011290 vs. TrEMBL
Match: A0A0B0N1Z7_GOSAR (Chalcone-flavonone isomerase family protein OS=Gossypium arboreum GN=F383_35786 PE=3 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 9.3e-43
Identity = 94/132 (71.21%), Postives = 109/132 (82.58%), Query Frame = 1


Query: 1   MVTAPVEKAIRVVVIKEIKGAQYGLQLENAVRDRLAADDKYEEEEEAQLEKVVEFFRSKY 60
           ++ APVEK +RVVVIKEIKG+QYG+QLE+AVRDRLAADDKYEEEEE  LEKVVEFF+SKY
Sbjct: 78  LINAPVEKFLRVVVIKEIKGSQYGVQLESAVRDRLAADDKYEEEEEEALEKVVEFFQSKY 137

Query: 61  LSSHSVISFHFPSAPTIAEIEFLSDEKEGSKMKVENGNVVEMIKKWYLGGTRGASQTTIS 120
               SVI++HFP+    AEI F ++ KE +K+KVEN NVVEMIKKWYLGGTRG S TTIS
Sbjct: 138 FKKDSVITYHFPANSATAEIAFTTEGKEEAKIKVENANVVEMIKKWYLGGTRGVSATTIS 197

Query: 121 SLAKNLAIELSK 133
           SLA  L+ EL K
Sbjct: 198 SLANTLSAELCK 209

[Close]

BLAST of CmoCh04G011290 vs. TAIR10
Match: AT5G05270.1 (AT5G05270.1 Chalcone-flavanone isomerase family protein)

HSP 1 Score: 151.8 bits (382), Expect = 3.0e-37
Identity = 78/131 (59.54%), Postives = 103/131 (78.63%), Query Frame = 1


Query: 1   MVTAPVEKAIRVVVIKEIKGAQYGLQLENAVRDRLAADDKYEEEEEAQLEKVVEFFRSKY 60
           + +A +EK IRVVVIKEIKGAQYG+QLEN VRDRLA +DKYEEEEE +LEKVV FF+SKY
Sbjct: 79  LASAEMEKVIRVVVIKEIKGAQYGVQLENTVRDRLAEEDKYEEEEETELEKVVGFFQSKY 138

Query: 61  LSSHSVISFHFPSAPTIAEIEFLSDEKEGSKMKVENGNVVEMIKKWYLGGTRGASQTTIS 120
             ++SVI++HF +   I EI F ++ KE  K+KVEN NVV M+++WYL G+RG S +TI 
Sbjct: 139 FKANSVITYHFSAKDGICEIGFETEGKEEEKLKVENANVVGMMQRWYLSGSRGVSPSTIV 198

Query: 121 SLAKNLAIELS 132
           S+A +++  L+
Sbjct: 199 SIADSISAVLT 209

[Close]

BLAST of CmoCh04G011290 vs. NCBI nr
Match: gi|778701556|ref|XP_011655048.1| (PREDICTED: probable chalcone--flavonone isomerase 3 isoform X2 [Cucumis sativus])

HSP 1 Score: 216.9 bits (551), Expect = 2.2e-53
Identity = 112/132 (84.85%), Postives = 123/132 (93.18%), Query Frame = 1


Query: 1   MVTAPVEKAIRVVVIKEIKGAQYGLQLENAVRDRLAADDKYEEEEEAQLEKVVEFFRSKY 60
           +++APVEK IRVVVIKEIKG+QYG+QLE+AVRDRLAADDKYE+EEEAQLEK+VEFF+SKY
Sbjct: 94  IISAPVEKVIRVVVIKEIKGSQYGVQLESAVRDRLAADDKYEDEEEAQLEKIVEFFQSKY 153

Query: 61  LSSHSVISFHFPSAPTIAEIEFLSDEKEGSKMKVENGNVVEMIKKWYLGGTRGASQTTIS 120
           L +HSVI+FHFP A TIAEIEF SDEKE SKMKVENGNVVEMIKKWYLGGTRG SQ TIS
Sbjct: 154 LKTHSVINFHFPPASTIAEIEFSSDEKEESKMKVENGNVVEMIKKWYLGGTRGVSQPTIS 213

Query: 121 SLAKNLAIELSK 133
           SLA NLAIELSK
Sbjct: 214 SLANNLAIELSK 225

[Close]

BLAST of CmoCh04G011290 vs. NCBI nr
Match: gi|778701552|ref|XP_011655047.1| (PREDICTED: probable chalcone--flavonone isomerase 3 isoform X1 [Cucumis sativus])

HSP 1 Score: 216.9 bits (551), Expect = 2.2e-53
Identity = 112/132 (84.85%), Postives = 123/132 (93.18%), Query Frame = 1


Query: 1   MVTAPVEKAIRVVVIKEIKGAQYGLQLENAVRDRLAADDKYEEEEEAQLEKVVEFFRSKY 60
           +++APVEK IRVVVIKEIKG+QYG+QLE+AVRDRLAADDKYE+EEEAQLEK+VEFF+SKY
Sbjct: 111 IISAPVEKVIRVVVIKEIKGSQYGVQLESAVRDRLAADDKYEDEEEAQLEKIVEFFQSKY 170

Query: 61  LSSHSVISFHFPSAPTIAEIEFLSDEKEGSKMKVENGNVVEMIKKWYLGGTRGASQTTIS 120
           L +HSVI+FHFP A TIAEIEF SDEKE SKMKVENGNVVEMIKKWYLGGTRG SQ TIS
Sbjct: 171 LKTHSVINFHFPPASTIAEIEFSSDEKEESKMKVENGNVVEMIKKWYLGGTRGVSQPTIS 230

Query: 121 SLAKNLAIELSK 133
           SLA NLAIELSK
Sbjct: 231 SLANNLAIELSK 242

[Close]

BLAST of CmoCh04G011290 vs. NCBI nr
Match: gi|659114208|ref|XP_008456952.1| (PREDICTED: probable chalcone--flavonone isomerase 3 [Cucumis melo])

HSP 1 Score: 216.1 bits (549), Expect = 3.7e-53
Identity = 112/132 (84.85%), Postives = 123/132 (93.18%), Query Frame = 1


Query: 1   MVTAPVEKAIRVVVIKEIKGAQYGLQLENAVRDRLAADDKYEEEEEAQLEKVVEFFRSKY 60
           +V+APVEK IRVVVIKEIKG+QYG+QLE+AVRDRLAADDKYE+EEEAQLEK+VEFF+SKY
Sbjct: 111 IVSAPVEKVIRVVVIKEIKGSQYGVQLESAVRDRLAADDKYEDEEEAQLEKIVEFFQSKY 170

Query: 61  LSSHSVISFHFPSAPTIAEIEFLSDEKEGSKMKVENGNVVEMIKKWYLGGTRGASQTTIS 120
           L +HSVI+FHFP A TIA+IEF SDEKE SKMKVENGNVVEMIKKWYLGGTRG SQ TIS
Sbjct: 171 LKTHSVINFHFPPASTIAQIEFSSDEKEESKMKVENGNVVEMIKKWYLGGTRGVSQPTIS 230

Query: 121 SLAKNLAIELSK 133
           SLA NLAIELSK
Sbjct: 231 SLANNLAIELSK 242

[Close]

BLAST of CmoCh04G011290 vs. NCBI nr
Match: gi|1009121630|ref|XP_015877562.1| (PREDICTED: probable chalcone--flavonone isomerase 3 [Ziziphus jujuba])

HSP 1 Score: 189.1 bits (479), Expect = 4.9e-45
Identity = 97/132 (73.48%), Postives = 113/132 (85.61%), Query Frame = 1


Query: 1   MVTAPVEKAIRVVVIKEIKGAQYGLQLENAVRDRLAADDKYEEEEEAQLEKVVEFFRSKY 60
           +++APVEK +RVV+IKEIKG+QYG+QLE+AVRDRLAADDKYEEEEEA LEKVVEFF+SKY
Sbjct: 78  VISAPVEKFLRVVIIKEIKGSQYGVQLESAVRDRLAADDKYEEEEEAALEKVVEFFQSKY 137

Query: 61  LSSHSVISFHFPSAPTIAEIEFLSDEKEGSKMKVENGNVVEMIKKWYLGGTRGASQTTIS 120
               SVI++HFPS    AEI F ++ KE SK+KVENGNVVEMIKKWYLGGTRG S TTI+
Sbjct: 138 FKKDSVITYHFPSTSATAEIVFTTEGKEDSKLKVENGNVVEMIKKWYLGGTRGVSPTTIT 197

Query: 121 SLAKNLAIELSK 133
           SLA  L+ ELSK
Sbjct: 198 SLANTLSAELSK 209

[Close]

BLAST of CmoCh04G011290 vs. NCBI nr
Match: gi|643704798|gb|KDP21650.1| (hypothetical protein JCGZ_03321 [Jatropha curcas])

HSP 1 Score: 184.1 bits (466), Expect = 1.6e-43
Identity = 95/132 (71.97%), Postives = 110/132 (83.33%), Query Frame = 1


Query: 1   MVTAPVEKAIRVVVIKEIKGAQYGLQLENAVRDRLAADDKYEEEEEAQLEKVVEFFRSKY 60
           ++ APVEK +RVVVIKEIKG+QYG+QLE+AVRDRLAADDKYEEEEE  LEKVVEFF+SKY
Sbjct: 83  LIAAPVEKFLRVVVIKEIKGSQYGVQLESAVRDRLAADDKYEEEEEEALEKVVEFFQSKY 142

Query: 61  LSSHSVISFHFPSAPTIAEIEFLSDEKEGSKMKVENGNVVEMIKKWYLGGTRGASQTTIS 120
               S+I+FHFP+    AEI F ++ KE SK+KVEN NVVEMIKKWYLGGTRG S TTI+
Sbjct: 143 FKKDSIITFHFPATSPTAEIAFSTEGKEESKLKVENANVVEMIKKWYLGGTRGVSATTIT 202

Query: 121 SLAKNLAIELSK 133
           SLA  L+ ELSK
Sbjct: 203 SLANTLSAELSK 214

The following BLAST results are available for this feature:

BLAST of CmoCh04G011290 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CFI3_ARATH	5.4e-36	59.54	Probable chalcone--flavonone isomerase 3 OS=Arabidopsis thaliana GN=CHI3 PE=1 SV...	[more]

BLAST of CmoCh04G011290 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPA3_CUCSA	1.5e-53	84.85	Chalcone-flavonone isomerase family protein OS=Cucumis sativus GN=Csa_5G221960 P...	[more]
A0A067JNS6_JATCU	1.1e-43	71.97	Chalcone-flavonone isomerase family protein OS=Jatropha curcas GN=JCGZ_03321 PE=...	[more]
A0A0D2VU95_GOSRA	9.3e-43	71.21	Chalcone-flavonone isomerase family protein OS=Gossypium raimondii GN=B456_012G0...	[more]
D6N3G6_GOSHI	9.3e-43	71.21	Chalcone-flavonone isomerase family protein OS=Gossypium hirsutum PE=2 SV=1	[more]
A0A0B0N1Z7_GOSAR	9.3e-43	71.21	Chalcone-flavonone isomerase family protein OS=Gossypium arboreum GN=F383_35786 ...	[more]

BLAST of CmoCh04G011290 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G05270.1	3.0e-37	59.54	Chalcone-flavanone isomerase family protein	[more]

BLAST of CmoCh04G011290 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778701556\|ref\|XP_011655048.1\|	2.2e-53	84.85	PREDICTED: probable chalcone--flavonone isomerase 3 isoform X2 [Cucumis sativus]	[more]
gi\|778701552\|ref\|XP_011655047.1\|	2.2e-53	84.85	PREDICTED: probable chalcone--flavonone isomerase 3 isoform X1 [Cucumis sativus]	[more]
gi\|659114208\|ref\|XP_008456952.1\|	3.7e-53	84.85	PREDICTED: probable chalcone--flavonone isomerase 3 [Cucumis melo]	[more]
gi\|1009121630\|ref\|XP_015877562.1\|	4.9e-45	73.48	PREDICTED: probable chalcone--flavonone isomerase 3 [Ziziphus jujuba]	[more]
gi\|643704798\|gb\|KDP21650.1\|	1.6e-43	71.97	hypothetical protein JCGZ_03321 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR016087	Chalcone_isomerase
IPR016088	Chalcone_isomerase_3-sand

Vocabulary: **Molecular Function**
Term	Definition
GO:0016872	intramolecular lyase activity
GO:0045430	chalcone isomerase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0009813	flavonoid biosynthetic process

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009718	anthocyanin-containing compound biosynthetic process
biological_process	GO:0009744	response to sucrose
biological_process	GO:0010224	response to UV-B
biological_process	GO:0009813	flavonoid biosynthetic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0045430	chalcone isomerase activity
molecular_function	GO:0016872	intramolecular lyase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G011290.1	CmoCh04G011290.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016087	Chalcone isomerase	PFAM	PF02431	Chalcone	coord: 1..126 score: 6.
IPR016087	Chalcone isomerase	unknown	SSF54626	Chalcone isomerase	coord: 2..131 score: 8.5
IPR016088	Chalcone isomerase, 3-layer sandwich	GENE3D	G3DSA:3.50.70.10		coord: 2..107 score: 1.0
None	No IPR available	unknown	Coil	Coil	coord: 27..47 scor
None	No IPR available	PANTHER	PTHR28039	FAMILY NOT NAMED	coord: 1..132 score: 5.5
None	No IPR available	PANTHER	PTHR28039:SF4	CHALCONE--FLAVONONE ISOMERASE 3-RELATED	coord: 1..132 score: 5.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G011290	Cucsa.143940	Cucumber (Gy14) v1	cgycmoB0400
CmoCh04G011290	CmaCh04G010650	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G011290	Cla007294	Watermelon (97103) v1	cmowmB684
CmoCh04G011290	Csa5G221960	Cucumber (Chinese Long) v2	cmocuB736
CmoCh04G011290	MELO3C020146	Melon (DHL92) v3.5.1	cmomeB633
CmoCh04G011290	ClCG07G005100	Watermelon (Charleston Gray)	cmowcgB675
CmoCh04G011290	CSPI05G11530	Wild cucumber (PI 183967)	cmocpiB746
CmoCh04G011290	Lsi04G010210	Bottle gourd (USVL1VR-Ls)	cmolsiB662
CmoCh04G011290	Cp4.1LG01g11950	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G011290	MELO3C020146.2	Melon (DHL92) v3.6.1	cmomedB738
CmoCh04G011290	CsaV3_5G010920	Cucumber (Chinese Long) v3	cmocucB0872
CmoCh04G011290	Cla97C07G133440	Watermelon (97103) v2	cmowmbB754
CmoCh04G011290	Bhi07G000416	Wax gourd	cmowgoB0888
CmoCh04G011290	CsGy5G008780	Cucumber (Gy14) v2	cgybcmoB651
CmoCh04G011290	Carg00166	Silver-seed gourd	carcmoB0923

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G011290	Cucumber (Gy14) v2	cgybcmoB820
CmoCh04G011290	Silver-seed gourd	carcmoB0224
CmoCh04G011290	Silver-seed gourd	carcmoB0373
CmoCh04G011290	Silver-seed gourd	carcmoB1220
CmoCh04G011290	Silver-seed gourd	carcmoB1341
CmoCh04G011290	Cucumber (Chinese Long) v3	cmocucB0903
CmoCh04G011290	Watermelon (97103) v2	cmowmbB700
CmoCh04G011290	Cucurbita moschata (Rifu)	cmocmoB219
CmoCh04G011290	Cucurbita moschata (Rifu)	cmocmoB269
CmoCh04G011290	Cucurbita moschata (Rifu)	cmocmoB464
CmoCh04G011290	Cucurbita moschata (Rifu)	cmocmoB473
CmoCh04G011290	Cucurbita maxima (Rimu)	cmacmoB264
CmoCh04G011290	Cucurbita maxima (Rimu)	cmacmoB315
CmoCh04G011290	Cucurbita maxima (Rimu)	cmacmoB730
CmoCh04G011290	Cucurbita maxima (Rimu)	cmacmoB828
CmoCh04G011290	Wild cucumber (PI 183967)	cmocpiB773
CmoCh04G011290	Cucumber (Chinese Long) v2	cmocuB764
CmoCh04G011290	Watermelon (Charleston Gray)	cmowcgB625
CmoCh04G011290	Cucurbita pepo (Zucchini)	cmocpeB662
CmoCh04G011290	Cucurbita pepo (Zucchini)	cmocpeB675
CmoCh04G011290	Cucurbita pepo (Zucchini)	cmocpeB699
CmoCh04G011290	Cucurbita pepo (Zucchini)	cmocpeB711
CmoCh04G011290	Bottle gourd (USVL1VR-Ls)	cmolsiB648