CmoCh04G008130 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G008130
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	(Dehydrin) (Dehydrin 2)
Location	Cmo_Chr04 : 4056902 .. 4059472 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGGTTTTGAAAAATGTCGCATTTCCAATCTGGAACCGATCAGTATGGCAACCCCGTTCGCCAGACTGATGAATATGGCAACGTGATCCATGGGACCGGTCAGCGCGTCGACCCGCATCACCGGACCGGTGAGTTCCGTGAGACGGATCAGTATGGCAACCCGGTTCGACGGGGCGGGGAGTACGGTGACCCGATCGGCACTGGTGGGACGTATGAGACTGGTGGGCACGGTGGCGTGGGTTATGGCGGAGGACACCAGCAGCAGCATAAGGAGCATGGGGGAGTACTTCGTCGCTCTGGAAGCTCTAGTAGTTCCAGCTCGGTAAAATTTGATGTTATATGATTATTTTCGTACATCAGTGTAAAAGAGACGATTTTTGAGTTTATAATAATAATGAGGTTGAAATTTCAGTCGGAAGATGATGGGCATGGAGGGAGGAGGAAGAAGGGGCTGAAAGAGAAGATAAAGGAGAAGCTGCCGGGGCATCATGACACGGCGCAGCAGCCACACGCGACATCAACCACCACACCTGGCGGGTACTCTTCGGTGGAGCACGGCGGCCAACACGAGAAGAAGGGGATAATGGATAAGATCAAGGAGAAGTTGCCGGGACATAACTGAGAGGCGTCGCTCACCATATGTGGGTGTAGATATGATATTAATAAAGTGATAGATGTGCGTGTATTGGGAGTTGTGTAGTGTTAAGTGTTAAGTGTGGTTGTGTGTATTATTATGTCATTTATGGGTTTGATGTATGTATGTACGTCTCGTTTGTGCTCATCTCATCTAGCTTCTACTTGGGCTGTTTTACGTTTCAAATCTACCTTCTTTTCCAACCTATAATTTGTAAGTAATAAGGATGAACAATTCTAAGTAATAAGGATGTTAAGCATCATAAAATTTAATCAACAATTCTAAGTAATAAGGATGTTAAGCATCATAAAATTTAATCAAGCAATCCTAATTTACTACATTTGGAGCACTAGAATTAAGATAATCCAAGGCTTAGGGGAAATATCCCAATAAAGTTTTTAAGTAGACAAACGTTCCAAAAATGATTATTATTCCCAAATTAAGTTCTATATGAATGATTAGCCTATAAAAACCATGATTCCTAATTAGGAGGTAGGAGATAATGTTATGGATTAAATAATAATTAATAATAATAAATATATTTATTTTTGTATAAGAAAAGAGAGTGAGAATATTTAAAATATTTTTACGGACTAAAAACTAATAGAAGTTATTTCTTTTTTAAAAAGAAACTCACCCCAATGAACCCAATTTTGTAGCCCCAATTTCACCCTTCCCCGAACATTGTCACTGGAGCTCACCGCCAGCGACCATTCTCTTGAATCCCAGACCTGACGGTTTCCACACCGATTGGATTTTCGGACGAACGGAGCTTGCGGCAAGGGTCGCTGGATTTACCTGCTCTGTCTGGGTTGTGAGTAACAAAATCAGTATGTTCTGGACTGCAATAAGGTATTTCGCGACGAAGCCAAAGCCGAAGATGAAGCCGATAGAGTTGAAAACTCCACCGGAGCAAACGCAGACGATCACTAGAGTTATATTCGACATCGTTAGGGAGCATGGTCCGCTAACCATAGCCGAAACTTGGGATCGCGTTCAGGTAAGCATCGTATTCCTGTTTCTGTTTCGTCATTTTCATGTTTTGCTTCAATTTTATTTCGATTTCTCCATCTCATCTCTATGAATTGTGGAAATTTATTATTCTATATGAATTAGATTCACATAGAAATCAGAACGATGGAAGACCGCTAGAGTAGATGCTTTGATCATTTCAATTGGGGTTTAGTTGTGACCGTGAAGAATAGTTGGAAATGAGAATTCGGTTTTGCATTCTTGTTGAATTAATTGTTCAAGACAGTTTCATCTCGGGAGAAATGTTGCCTCTTTCCAGCATTTTAGGCTTCAAAGTTCTAAAAAACTAGCTTTACATTTAACCCATCCAAATGCCTCAGAAGTGCATACTTTCATAGATGATGGGCTCCCAATGTACCAAGTCTGAGTTGCTCTTTAGAAATGAAGGACACGGTTGTAAAACCTAATTAACAGATCCTGTTCAAGTAAGGTCGGAAGTCTGAGTTGCTCAAATCCTAGTCAAATGACCATTGCCGTATTTTCCATTAACAATGGGGATGATTGATGAAAGTGCTTTTAGCTTTTGAGTTGGTTTCTGTGTTGAAGGGTATTGGTGTGGTCATGTAACATAATAGCTCAACTAGAATGGGAAATGTCACAGTTCTGGGTACTGTTTGTTCTGTAACTTGGTGCTATTTTGTTAGAAAAAATCTTTATACGTAAATGGTGTTGTAATGAGCTGATAAGCGTCCATTTATTTTCAGGAAGTGGGTTTGAGAGGATTAACAAGCAAAAGGCACATGAAAATAGTGATGAGATGGATGAGGGAACGGCAGAAGTTAAGACTGATGTGCAATCACGTAGGACCTAATAAGCAGTTTCTTTATACCACCTGGTTCACAAAACCCAACTTCGGACAGGCAAAGCCACAGGGGCGTAATTCTTCCCAACCCAAGAGCCCTTGA

mRNA sequence

TGGGTTTTGAAAAATGTCGCATTTCCAATCTGGAACCGATCAGTATGGCAACCCCGTTCGCCAGACTGATGAATATGGCAACGTGATCCATGGGACCGGTCAGCGCGTCGACCCGCATCACCGGACCGGTGAGTTCCGTGAGACGGATCAGTATGGCAACCCGGTTCGACGGGGCGGGGAGTACGGTGACCCGATCGGCACTGGTGGGACGTATGAGACTGGTGGGCACGGTGGCGTGGGTTATGGCGGAGGACACCAGCAGCAGCATAAGGAGCATGGGGGAGTACTTCGTCGCTCTGGAAGCTCTAGTAGTTCCAGCTCGTCGGAAGATGATGGGCATGGAGGGAGGAGGAAGAAGGGGCTGAAAGAGAAGATAAAGGAGAAGCTGCCGGGGCATCATGACACGGCGCAGCAGCCACACGCGACATCAACCACCACACCTGGCGGGTACTCTTCGGTGGAGCACGGCGGCCAACACGAGAAGAAGGGGATAATGGATAAGATCAAGGAGAATGATAGATGTGCGTGTATTGGGAGTTGTGTAGTGTTAAGTGTTAAGTGTGGTTGTGTGTATTATTATGTCATTTATGGGTTTGATGTATGTATGTACGTCTCGTTTGTGCTCATCTCATCTAGCTTCTACTTGGGCTGTTTTACGTTTCAAATCTACCTTCTTTTCCAACCTATAATTTCCCCAATTTCACCCTTCCCCGAACATTGTCACTGGAGCTCACCGCCAGCGACCATTCTCTTGAATCCCAGACCTGACGGTTTCCACACCGATTGGATTTTCGGACGAACGGAGCTTGCGGCAAGGGTCGCTGGATTTACCTGCTCTGTCTGGGTTGTGAGTAACAAAATCAGTATGTTCTGGACTGCAATAAGGTATTTCGCGACGAAGCCAAAGCCGAAGATGAAGCCGATAGAGTTGAAAACTCCACCGGAGCAAACGCAGACGATCACTAGAGTTATATTCGACATCGTTAGGGAGCATGGTCCGCTAACCATAGCCGAAACTTGGGATCGCGTTCAGGAAGTGGGTTTGAGAGGATTAACAAGCAAAAGGCACATGAAAATAGTGATGAGATGGATGAGGGAACGGCAGAAGTTAAGACTGATGTGCAATCACGTAGGACCTAATAAGCAGTTTCTTTATACCACCTGGTTCACAAAACCCAACTTCGGACAGGCAAAGCCACAGGGGCGTAATTCTTCCCAACCCAAGAGCCCTTGA

Coding sequence (CDS)

ATGTCGCATTTCCAATCTGGAACCGATCAGTATGGCAACCCCGTTCGCCAGACTGATGAATATGGCAACGTGATCCATGGGACCGGTCAGCGCGTCGACCCGCATCACCGGACCGGTGAGTTCCGTGAGACGGATCAGTATGGCAACCCGGTTCGACGGGGCGGGGAGTACGGTGACCCGATCGGCACTGGTGGGACGTATGAGACTGGTGGGCACGGTGGCGTGGGTTATGGCGGAGGACACCAGCAGCAGCATAAGGAGCATGGGGGAGTACTTCGTCGCTCTGGAAGCTCTAGTAGTTCCAGCTCGTCGGAAGATGATGGGCATGGAGGGAGGAGGAAGAAGGGGCTGAAAGAGAAGATAAAGGAGAAGCTGCCGGGGCATCATGACACGGCGCAGCAGCCACACGCGACATCAACCACCACACCTGGCGGGTACTCTTCGGTGGAGCACGGCGGCCAACACGAGAAGAAGGGGATAATGGATAAGATCAAGGAGAATGATAGATGTGCGTGTATTGGGAGTTGTGTAGTGTTAAGTGTTAAGTGTGGTTGTGTGTATTATTATGTCATTTATGGGTTTGATGTATGTATGTACGTCTCGTTTGTGCTCATCTCATCTAGCTTCTACTTGGGCTGTTTTACGTTTCAAATCTACCTTCTTTTCCAACCTATAATTTCCCCAATTTCACCCTTCCCCGAACATTGTCACTGGAGCTCACCGCCAGCGACCATTCTCTTGAATCCCAGACCTGACGGTTTCCACACCGATTGGATTTTCGGACGAACGGAGCTTGCGGCAAGGGTCGCTGGATTTACCTGCTCTGTCTGGGTTGTGAGTAACAAAATCAGTATGTTCTGGACTGCAATAAGGTATTTCGCGACGAAGCCAAAGCCGAAGATGAAGCCGATAGAGTTGAAAACTCCACCGGAGCAAACGCAGACGATCACTAGAGTTATATTCGACATCGTTAGGGAGCATGGTCCGCTAACCATAGCCGAAACTTGGGATCGCGTTCAGGAAGTGGGTTTGAGAGGATTAACAAGCAAAAGGCACATGAAAATAGTGATGAGATGGATGAGGGAACGGCAGAAGTTAAGACTGATGTGCAATCACGTAGGACCTAATAAGCAGTTTCTTTATACCACCTGGTTCACAAAACCCAACTTCGGACAGGCAAAGCCACAGGGGCGTAATTCTTCCCAACCCAAGAGCCCTTGA

Homology

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BLAST of CmoCh04G008130 vs. Swiss-Prot
Match: DHR18_ARATH (Dehydrin Rab18 OS=Arabidopsis thaliana GN=RAB18 PE=2 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 6.1e-22
Identity = 87/172 (50.58%), Postives = 101/172 (58.72%), Query Frame = 1


Query: 8   TDQYGNPVRQT-DEYGNVIHGTGQRVDPHHRTGEFRETDQYGNPVRRGGEYGDPIGTGGT 67
           TD+YGNP++Q  DEYGN + G G         G       YG   +  G  G   GTGG 
Sbjct: 13  TDEYGNPIQQQYDEYGNPMGGGGYGTGGG---GGATGGQGYGTGGQGYGSGGQGYGTGGQ 72

Query: 68  -YETG-GHGGVGYGGG-----HQQQHKEHGG----VLRRSGSSSSSSSSEDDGHGGRRKK 127
            Y TG G  G G GGG      +Q HKE GG    +L RSGS SSSSS EDDG GGRRKK
Sbjct: 73  GYGTGTGTEGFGTGGGARHHGQEQLHKESGGGLGGMLHRSGSGSSSSS-EDDGQGGRRKK 132

Query: 128 GLKEKIKEKLPGHHDTAQQPHATSTTTPGGYSSVEHGGQ-HEKKGIMDKIKE 167
           G+ +KIKEKLPGHHD + Q  A       GY +  +GG+ HEKKG+MDKIKE
Sbjct: 133 GITQKIKEKLPGHHDQSGQAQAMG-GMGSGYDAGGYGGEHHEKKGMMDKIKE 179

[Close]

BLAST of CmoCh04G008130 vs. Swiss-Prot
Match: DH16B_ORYSJ (Dehydrin Rab16B OS=Oryza sativa subsp. japonica GN=RAB16B PE=2 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 5.7e-20
Identity = 75/144 (52.08%), Postives = 82/144 (56.94%), Query Frame = 1


Query: 45  DQYGNPVRRGGEYGD----PIGTGGTYETGGHGGVGYGGGHQQQHKEH--GGVLRRSGSS 104
           D YGNPV   G+YG     P G  G    GGH G G GG  Q   ++H  GG+L RSGSS
Sbjct: 16  DVYGNPVG-AGQYGGGATAPGGGHGAMGMGGHAGAGAGGQFQPAREDHKTGGILHRSGSS 75

Query: 105 SSSSSSEDDGHGGRRKKGLKEKIKEKLPG-----HHDT-----------AQQPHATSTTT 164
           SSSSSSEDDG GGRRKKG+KEKIKEKLPG     +H              QQ HA  T  
Sbjct: 76  SSSSSSEDDGMGGRRKKGIKEKIKEKLPGGNKGNNHQQQQMMGNTGGAYGQQGHAGMTGA 135

Query: 165 PGGYSSVEHGGQHEKKGIMDKIKE 167
             G    E+G   EKKG MDKIKE
Sbjct: 136 GTGVHGAEYGNAGEKKGFMDKIKE 158

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BLAST of CmoCh04G008130 vs. Swiss-Prot
Match: DHN1_AVIMR (Dehydrin DHN1 OS=Avicennia marina GN=DHN1 PE=1 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.3e-19
Identity = 87/182 (47.80%), Postives = 95/182 (52.20%), Query Frame = 1


Query: 8   TDQYGNPVRQTDEYG----------------NVIHGTGQRVDPHHRTGEFRETDQYGNPV 67
           TD+YGNP+RQT E+G                 V +GT Q V     T   ++TDQYG P 
Sbjct: 12  TDEYGNPIRQTGEFGATGAYGANQQYGTTGTTVGYGTDQCVTTV--TTGAQKTDQYGTPG 71

Query: 68  RRGGEYGDPIGTGGTY-ETGGHGGVGYGGGHQQQHKEHGGVLRRSGSSSSSSSSEDDGHG 127
             G    D  GT GT  E G HGG G   G        GG   R   SS SSSSEDDG G
Sbjct: 72  TTGAYGTDQYGTTGTTGEYGTHGG-GIAPGATDAGLAGGGGGHRRLGSSGSSSSEDDGQG 131

Query: 128 GRRKKGLKEKIKEKLPGHHDTAQQPHATSTTTPGGYSSVEHGG------QHEKKGIMDKI 167
           GRRKKG+KEKIKEKLPG      Q H T   + GGY   EHGG        EKKGIMDKI
Sbjct: 132 GRRKKGIKEKIKEKLPGGGHGDDQTHPTPPGS-GGY-GYEHGGAAESPEHEEKKGIMDKI 188

[Close]

BLAST of CmoCh04G008130 vs. Swiss-Prot
Match: DHN1_MAIZE (Dehydrin DHN1 OS=Zea mays GN=DHN1 PE=1 SV=2)

HSP 1 Score: 97.4 bits (241), Expect = 3.7e-19
Identity = 88/186 (47.31%), Postives = 96/186 (51.61%), Query Frame = 1


Query: 3   HFQSG-TDQYGNPVRQTDEYGNVIHGTGQRVDPHHRTGEFRETDQYGNPVRRGGEYGDPI 62
           H ++G  DQYGNPV      G V HGTG      H TG                      
Sbjct: 11  HGRTGHVDQYGNPV------GGVEHGTGGM---RHGTGT--------------------- 70

Query: 63  GTGGTYETGGHGGVGYGGGHQQQHKEH---GGVLRRSGSSSSSSSSEDDGHGGRRKKGLK 122
            TGG  + G HGG G GGG  Q  +E    GG+L RSGSSSSSSS EDDG GGRRKKG+K
Sbjct: 71  -TGGMGQLGEHGGAGMGGGQFQPAREEHKTGGILHRSGSSSSSSS-EDDGMGGRRKKGIK 130

Query: 123 EKIKEKLPGHHDTAQQPHATSTT---------TPGGYSSVEH-GGQH--------EKKGI 167
           EKIKEKLPG H   Q  HAT+TT         T   Y    H GG +        EKKGI
Sbjct: 131 EKIKEKLPGGHKDDQ--HATATTGGAYGQQGHTGSAYGQQGHTGGAYATGTEGTGEKKGI 162

[Close]

BLAST of CmoCh04G008130 vs. Swiss-Prot
Match: DH16B_ORYSI (Dehydrin Rab16B OS=Oryza sativa subsp. indica GN=RAB16B PE=2 SV=2)

HSP 1 Score: 97.4 bits (241), Expect = 3.7e-19
Identity = 73/144 (50.69%), Postives = 82/144 (56.94%), Query Frame = 1


Query: 45  DQYGNPVRRGGEYGD----PIGTGGTYETGGHGGVGYGGGHQ--QQHKEHGGVLRRSGSS 104
           D YGNPV   G+YG     P G  G    GGH G G GG  Q  ++ ++ GG+L RSGSS
Sbjct: 16  DVYGNPVG-AGQYGGGATAPGGGHGAMGMGGHAGAGAGGQFQPAREDRKTGGILHRSGSS 75

Query: 105 SSSSSSEDDGHGGRRKKGLKEKIKEKLPGHHD----------------TAQQPHATSTTT 164
           SSSSSSEDDG GGRRKKG+KEKIKEKLPG +                   QQ HA  T  
Sbjct: 76  SSSSSSEDDGMGGRRKKGIKEKIKEKLPGGNKGNNQQQQQMMGNTGGAYGQQGHAGMTGA 135

Query: 165 PGGYSSVEHGGQHEKKGIMDKIKE 167
             G    E+G   EKKG MDKIKE
Sbjct: 136 GTGVHGAEYGNAGEKKGFMDKIKE 158

[Close]

BLAST of CmoCh04G008130 vs. TrEMBL
Match: A0A0A0KWM9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G045040 PE=3 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 6.7e-60
Identity = 131/174 (75.29%), Postives = 145/174 (83.33%), Query Frame = 1


Query: 1   MSHFQSG-TDQYGNPVRQTDEYGNVIHGTGQRVDPHHRTGEFRETDQYGNPVRRGGE-YG 60
           M+H+QSG TDQYGNP+RQTDEYGNVI  TGQ  DP  RTGEFRETDQYGNP RR  + +G
Sbjct: 1   MAHYQSGRTDQYGNPIRQTDEYGNVISETGQYGDPLRRTGEFRETDQYGNPGRRTDDVFG 60

Query: 61  DPIGTG------GTYETGGHGGVGYGGGHQQQHKEHGGVLRRSGSSSSSSSSEDDGHGGR 120
           +P+GTG      GTYET G+GG GYGGGH QQHKEHGG+L RSG SSSSSSSEDDGHGGR
Sbjct: 61  NPVGTGTGMGTGGTYETTGYGGTGYGGGHHQQHKEHGGILHRSG-SSSSSSSEDDGHGGR 120

Query: 121 RKKGLKEKIKEKLPGHHDTAQQPHATSTTTPGGYSSVEHGGQHEKKGIMDKIKE 167
           RKKGLKEK+KEKLPGHH   +Q  A STTTPGGY+S E+GGQHEKKGIM+KIKE
Sbjct: 121 RKKGLKEKVKEKLPGHHRHEEQ--AVSTTTPGGYTSAEYGGQHEKKGIMEKIKE 171

[Close]

BLAST of CmoCh04G008130 vs. TrEMBL
Match: A0A0A0KY02_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G045020 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 1.7e-55
Identity = 109/122 (89.34%), Postives = 113/122 (92.62%), Query Frame = 1


Query: 285 MFWTAIRYFATKPKPKMKPIELKTPPEQTQTITRVIFDIVREHGPLTIAETWDRVQEVGL 344
           MF TA+R FATKPKPKMKPIELKTPPEQTQTITR IFDIV+EHGPLTIAETWDRVQEVGL
Sbjct: 1   MFGTAVRCFATKPKPKMKPIELKTPPEQTQTITRAIFDIVKEHGPLTIAETWDRVQEVGL 60

Query: 345 RGLTSKRHMKIVMRWMRERQKLRLMCNHVGPNKQFLYTTWFTKPNFGQAKPQGRNSSQPK 404
           RGLTSKRHMKIVMRWMRERQK+RLMCNHVGP+KQFLYTTWFTKPNF QAK   RN SQPK
Sbjct: 61  RGLTSKRHMKIVMRWMRERQKIRLMCNHVGPHKQFLYTTWFTKPNFEQAKQLQRNVSQPK 120

Query: 405 SP 407
            P
Sbjct: 121 RP 122

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BLAST of CmoCh04G008130 vs. TrEMBL
Match: A0A061EKV8_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_017340 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 3.4e-51
Identity = 102/131 (77.86%), Postives = 114/131 (87.02%), Query Frame = 1


Query: 285 MFWTAIRYFATKPKPKMKPIELKTPPEQTQTITRVIFDIVREHGPLTIAETWDRVQEVGL 344
           MF +AIRYF+TKPKPKMKPIELKTPPEQTQTITRVIFDI++EHGPLT+ +TW+RV+EVGL
Sbjct: 1   MFGSAIRYFSTKPKPKMKPIELKTPPEQTQTITRVIFDILKEHGPLTVGDTWERVKEVGL 60

Query: 345 RGLTSKRHMKIVMRWMRERQKLRLMCNHVGPNKQFLYTTWFTKPNFGQAKP--------- 404
           RGLTSKRHMKIV+RWMRERQKLRL+CNHVGP+KQFLYTTWFTK N GQA+P         
Sbjct: 61  RGLTSKRHMKIVLRWMRERQKLRLICNHVGPHKQFLYTTWFTKSNIGQARPVKNSSATSL 120

Query: 405 QGRNSSQPKSP 407
              NSS PKSP
Sbjct: 121 PVNNSSSPKSP 131

[Close]

BLAST of CmoCh04G008130 vs. TrEMBL
Match: U5GHM4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s12090g PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.7e-50
Identity = 101/121 (83.47%), Postives = 110/121 (90.91%), Query Frame = 1


Query: 285 MFWTAIRYFATKPKPKMKPIELKTPPEQTQTITRVIFDIVREHGPLTIAETWDRVQEVGL 344
           MF  AIRYF+TKPKPKMKPIELKTPPEQTQTITR IFDIV+EHGPLTIAETW++VQEVGL
Sbjct: 1   MFRAAIRYFSTKPKPKMKPIELKTPPEQTQTITRAIFDIVKEHGPLTIAETWEKVQEVGL 60

Query: 345 RGLTSKRHMKIVMRWMRERQKLRLMCNHVGPNKQFLYTTWFTKPNFG-QAKPQGRNSSQP 404
           R LTSKRHMKIV+RWMRERQKL+L+CNHVGP+KQFLYTTWFTKPNF  QAKP  +  S P
Sbjct: 61  RRLTSKRHMKIVLRWMRERQKLKLICNHVGPHKQFLYTTWFTKPNFKLQAKPVNKQPSLP 120

[Close]

BLAST of CmoCh04G008130 vs. TrEMBL
Match: W9S3U6_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_013253 PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 4.1e-49
Identity = 100/122 (81.97%), Postives = 110/122 (90.16%), Query Frame = 1


Query: 285 MFWTAIRYFATKPKPKMKPIELKTPPEQTQTITRVIFDIVREHGPLTIAETWDRVQEVGL 344
           MF TAIRY A K KP+MKP+ELKTPPEQTQTITRVIFDIV+EHGPLTIAETWD V+EVGL
Sbjct: 1   MFATAIRYMAKKGKPEMKPMELKTPPEQTQTITRVIFDIVKEHGPLTIAETWDHVKEVGL 60

Query: 345 RGLTSKRHMKIVMRWMRERQKLRLMCNHVGPNKQFLYTTWFTKPNFGQAKPQGRNSSQPK 404
           RGLTSKRHMKIV+RWMRERQKLRL+CNHVGP+KQFLYTTWFTKPN  QAKP  +   +P+
Sbjct: 61  RGLTSKRHMKIVLRWMRERQKLRLICNHVGPHKQFLYTTWFTKPNMKQAKPV-KAPPRPQ 120

Query: 405 SP 407
           SP
Sbjct: 121 SP 121

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BLAST of CmoCh04G008130 vs. TAIR10
Match: AT5G49410.1 (AT5G49410.1 unknown protein)

HSP 1 Score: 190.7 bits (483), Expect = 1.8e-48
Identity = 92/120 (76.67%), Postives = 106/120 (88.33%), Query Frame = 1


Query: 291 RYFATKPKPKMKPIELKTPPEQTQTITRVIFDIVREHGPLTIAETWDRVQEVGLRGLTSK 350
           R+FATKPKPKMKPIEL TPPEQTQTITRVIFDI+++HGPLTIAETWDRV+EVGLRGLTSK
Sbjct: 22  RHFATKPKPKMKPIELNTPPEQTQTITRVIFDILKDHGPLTIAETWDRVKEVGLRGLTSK 81

Query: 351 RHMKIVMRWMRERQKLRLMCNHVGPNKQFLYTTWFTKPN----FGQAKPQ---GRNSSQP 404
           RHMKI++RWMRERQKL+L+CNHVGP+KQFLYTTWFTK N    F +  P+   G++S  P
Sbjct: 82  RHMKIILRWMRERQKLKLICNHVGPHKQFLYTTWFTKHNPSSKFPKLPPENLTGKSSGHP 141

[Close]

BLAST of CmoCh04G008130 vs. TAIR10
Match: AT5G66400.1 (AT5G66400.1 Dehydrin family protein)

HSP 1 Score: 106.7 bits (265), Expect = 3.5e-23
Identity = 87/172 (50.58%), Postives = 101/172 (58.72%), Query Frame = 1


Query: 8   TDQYGNPVRQT-DEYGNVIHGTGQRVDPHHRTGEFRETDQYGNPVRRGGEYGDPIGTGGT 67
           TD+YGNP++Q  DEYGN + G G         G       YG   +  G  G   GTGG 
Sbjct: 13  TDEYGNPIQQQYDEYGNPMGGGGYGTGGG---GGATGGQGYGTGGQGYGSGGQGYGTGGQ 72

Query: 68  -YETG-GHGGVGYGGG-----HQQQHKEHGG----VLRRSGSSSSSSSSEDDGHGGRRKK 127
            Y TG G  G G GGG      +Q HKE GG    +L RSGS SSSSS EDDG GGRRKK
Sbjct: 73  GYGTGTGTEGFGTGGGARHHGQEQLHKESGGGLGGMLHRSGSGSSSSS-EDDGQGGRRKK 132

Query: 128 GLKEKIKEKLPGHHDTAQQPHATSTTTPGGYSSVEHGGQ-HEKKGIMDKIKE 167
           G+ +KIKEKLPGHHD + Q  A       GY +  +GG+ HEKKG+MDKIKE
Sbjct: 133 GITQKIKEKLPGHHDQSGQAQAMG-GMGSGYDAGGYGGEHHEKKGMMDKIKE 179

[Close]

BLAST of CmoCh04G008130 vs. TAIR10
Match: AT1G73940.1 (AT1G73940.1 unknown protein)

HSP 1 Score: 90.1 bits (222), Expect = 3.3e-18
Identity = 39/105 (37.14%), Postives = 67/105 (63.81%), Query Frame = 1


Query: 278 VVSNKISMFWTAIRYFATKPKPKMKPIELKTPPEQTQTITRVIFDIVREHGPLTIAETWD 337
           +  N+IS     +RY + +    ++ I  K P ++   I+  ++D+ + HGPL++  TW 
Sbjct: 19  IFDNEISYNSLLVRYMSRERAVNVRKINPKVPIQEAYAISNSLYDLFKLHGPLSVPNTWL 78

Query: 338 RVQEVGLRGLTSKRHMKIVMRWMRERQKLRLMCNHVGPNKQFLYT 383
           R QE G+ GL SK HMK++++WMR ++ L+L+CN VG +K+F +T
Sbjct: 79  RAQEAGVSGLNSKTHMKLLLKWMRGKKMLKLICNQVGSSKKFFHT 123

[Close]

BLAST of CmoCh04G008130 vs. TAIR10
Match: AT3G50980.1 (AT3G50980.1 dehydrin xero 1)

HSP 1 Score: 80.9 bits (198), Expect = 2.0e-15
Identity = 64/127 (50.39%), Postives = 74/127 (58.27%), Query Frame = 1


Query: 42  RETDQYGNPVRRGGEYGDPIGTGGTYETGGHGGVGYGGGHQQQHKEHGGVLRRSGSSSSS 101
           ++ DQ+GNP         P  TG     GG   V  GGG         G+L RSGSSSSS
Sbjct: 15  QQLDQFGNPF--------PATTGAYGTAGGAPAVAEGGGLS-------GMLHRSGSSSSS 74

Query: 102 SSSEDDGHGGRR--KKGLKEKIKEKLPGHHDTAQQPHATSTTTPGGYSSVEHGGQHEKKG 161
           SS EDDG GGRR  KKG+ EKIKEKLPGHHD+ +     STTT     +V     HEKKG
Sbjct: 75  SS-EDDGLGGRRRKKKGITEKIKEKLPGHHDSNKTSSLGSTTTAYDTGTV----HHEKKG 121

Query: 162 IMDKIKE 167
           +M+KIKE
Sbjct: 135 MMEKIKE 121

[Close]

BLAST of CmoCh04G008130 vs. TAIR10
Match: AT2G21490.1 (AT2G21490.1 dehydrin LEA)

HSP 1 Score: 75.9 bits (185), Expect = 6.5e-14
Identity = 77/168 (45.83%), Postives = 92/168 (54.76%), Query Frame = 1


Query: 8   TDQYGNPVRQ-TDEYGNVIHGTGQ-RVDPHHRTGEFRETDQYGNPVRRGGEY---GDPIG 67
           TD  GNP+   TDE+GN ++ TG     P H+  E   +D   +P    GE      P G
Sbjct: 15  TDTQGNPIVDLTDEHGNPMYLTGVVSSTPQHK--ESTTSDIAEHPTSTVGETHPAAAPAG 74

Query: 68  TGGTYE---TGGHGGVGYGGGHQQQHKEHGGVLRRSGSSSSSSSSEDDGHGGRRKKGLKE 127
            G       TG   G G     QQ H      LRRSGSSSSSSS EDDG GGRRKK +KE
Sbjct: 75  AGAATAATATGVSAGTGATTTGQQHHGSLEEHLRRSGSSSSSSS-EDDGQGGRRKKSIKE 134

Query: 128 KIKEKL-PGHHDTAQQPHATSTTTPGGYSSVEHGGQHEKKGIMDKIKE 167
           KIKEK   G H   Q P AT+TTT  G ++ +    HEKKGI++KIK+
Sbjct: 135 KIKEKFGSGKHKDEQTP-ATATTT--GPATTDQ--PHEKKGILEKIKD 174

[Close]

BLAST of CmoCh04G008130 vs. NCBI nr
Match: gi|659102400|ref|XP_008452109.1| (PREDICTED: dehydrin DHN1 [Cucumis melo])

HSP 1 Score: 241.1 bits (614), Expect = 3.3e-60
Identity = 132/174 (75.86%), Postives = 144/174 (82.76%), Query Frame = 1


Query: 1   MSHFQSG-TDQYGNPVRQTDEYGNVIHGTGQRVDPHHRTGEFRETDQYGNPVRRGGE-YG 60
           M+H+QSG TDQYGNP+RQTDEYGNVI  TGQ  DP  RTGEFRETDQYGNPVRR  + +G
Sbjct: 1   MAHYQSGGTDQYGNPIRQTDEYGNVISETGQYGDPLRRTGEFRETDQYGNPVRRTDDVFG 60

Query: 61  DPIGTG------GTYETGGHGGVGYGGGHQQQHKEHGGVLRRSGSSSSSSSSEDDGHGGR 120
           +P+GTG      GTYET G+GG GYGGGH QQHKEHGG+L RSGSSSSSSS EDDGHGGR
Sbjct: 61  NPVGTGTGMGTGGTYETSGYGGAGYGGGHHQQHKEHGGILHRSGSSSSSSS-EDDGHGGR 120

Query: 121 RKKGLKEKIKEKLPGHHDTAQQPHATSTTTPGGYSSVEHGGQHEKKGIMDKIKE 167
           RKKGLKEK+KEKLPG H    Q  A STTTPGGY+S EHGGQHEKKGIM+KIKE
Sbjct: 121 RKKGLKEKVKEKLPGRHHHEGQ--AVSTTTPGGYASAEHGGQHEKKGIMEKIKE 171

[Close]

BLAST of CmoCh04G008130 vs. NCBI nr
Match: gi|778690692|ref|XP_011653150.1| (PREDICTED: dehydrin DHN1-like [Cucumis sativus])

HSP 1 Score: 239.6 bits (610), Expect = 9.7e-60
Identity = 131/174 (75.29%), Postives = 145/174 (83.33%), Query Frame = 1


Query: 1   MSHFQSG-TDQYGNPVRQTDEYGNVIHGTGQRVDPHHRTGEFRETDQYGNPVRRGGE-YG 60
           M+H+QSG TDQYGNP+RQTDEYGNVI  TGQ  DP  RTGEFRETDQYGNP RR  + +G
Sbjct: 1   MAHYQSGRTDQYGNPIRQTDEYGNVISETGQYGDPLRRTGEFRETDQYGNPGRRTDDVFG 60

Query: 61  DPIGTG------GTYETGGHGGVGYGGGHQQQHKEHGGVLRRSGSSSSSSSSEDDGHGGR 120
           +P+GTG      GTYET G+GG GYGGGH QQHKEHGG+L RSG SSSSSSSEDDGHGGR
Sbjct: 61  NPVGTGTGMGTGGTYETTGYGGTGYGGGHHQQHKEHGGILHRSG-SSSSSSSEDDGHGGR 120

Query: 121 RKKGLKEKIKEKLPGHHDTAQQPHATSTTTPGGYSSVEHGGQHEKKGIMDKIKE 167
           RKKGLKEK+KEKLPGHH   +Q  A STTTPGGY+S E+GGQHEKKGIM+KIKE
Sbjct: 121 RKKGLKEKVKEKLPGHHRHEEQ--AVSTTTPGGYTSAEYGGQHEKKGIMEKIKE 171

[Close]

BLAST of CmoCh04G008130 vs. NCBI nr
Match: gi|659102404|ref|XP_008452111.1| (PREDICTED: uncharacterized protein LOC103493216 [Cucumis melo])

HSP 1 Score: 226.9 bits (577), Expect = 6.5e-56
Identity = 111/122 (90.98%), Postives = 114/122 (93.44%), Query Frame = 1


Query: 285 MFWTAIRYFATKPKPKMKPIELKTPPEQTQTITRVIFDIVREHGPLTIAETWDRVQEVGL 344
           MF TAIR FATKPKPKMKPIELKTPPEQTQTITR IFDIV+EHGPLTIAETWDRVQEVGL
Sbjct: 1   MFRTAIRCFATKPKPKMKPIELKTPPEQTQTITRAIFDIVKEHGPLTIAETWDRVQEVGL 60

Query: 345 RGLTSKRHMKIVMRWMRERQKLRLMCNHVGPNKQFLYTTWFTKPNFGQAKPQGRNSSQPK 404
           RGLTSKRHMKIVMRWMRERQK+RLMCNHVGP+KQFLYTTWFTKPNF QAK   RN SQPK
Sbjct: 61  RGLTSKRHMKIVMRWMRERQKIRLMCNHVGPHKQFLYTTWFTKPNFEQAKQLQRNVSQPK 120

Query: 405 SP 407
           SP
Sbjct: 121 SP 122

[Close]

BLAST of CmoCh04G008130 vs. NCBI nr
Match: gi|449457514|ref|XP_004146493.1| (PREDICTED: uncharacterized protein LOC101203168 [Cucumis sativus])

HSP 1 Score: 224.9 bits (572), Expect = 2.5e-55
Identity = 109/122 (89.34%), Postives = 113/122 (92.62%), Query Frame = 1


Query: 285 MFWTAIRYFATKPKPKMKPIELKTPPEQTQTITRVIFDIVREHGPLTIAETWDRVQEVGL 344
           MF TA+R FATKPKPKMKPIELKTPPEQTQTITR IFDIV+EHGPLTIAETWDRVQEVGL
Sbjct: 1   MFGTAVRCFATKPKPKMKPIELKTPPEQTQTITRAIFDIVKEHGPLTIAETWDRVQEVGL 60

Query: 345 RGLTSKRHMKIVMRWMRERQKLRLMCNHVGPNKQFLYTTWFTKPNFGQAKPQGRNSSQPK 404
           RGLTSKRHMKIVMRWMRERQK+RLMCNHVGP+KQFLYTTWFTKPNF QAK   RN SQPK
Sbjct: 61  RGLTSKRHMKIVMRWMRERQKIRLMCNHVGPHKQFLYTTWFTKPNFEQAKQLQRNVSQPK 120

Query: 405 SP 407
            P
Sbjct: 121 RP 122

[Close]

BLAST of CmoCh04G008130 vs. NCBI nr
Match: gi|590647865|ref|XP_007032018.1| (Uncharacterized protein TCM_017340 [Theobroma cacao])

HSP 1 Score: 210.7 bits (535), Expect = 4.8e-51
Identity = 102/131 (77.86%), Postives = 114/131 (87.02%), Query Frame = 1


Query: 285 MFWTAIRYFATKPKPKMKPIELKTPPEQTQTITRVIFDIVREHGPLTIAETWDRVQEVGL 344
           MF +AIRYF+TKPKPKMKPIELKTPPEQTQTITRVIFDI++EHGPLT+ +TW+RV+EVGL
Sbjct: 1   MFGSAIRYFSTKPKPKMKPIELKTPPEQTQTITRVIFDILKEHGPLTVGDTWERVKEVGL 60

Query: 345 RGLTSKRHMKIVMRWMRERQKLRLMCNHVGPNKQFLYTTWFTKPNFGQAKP--------- 404
           RGLTSKRHMKIV+RWMRERQKLRL+CNHVGP+KQFLYTTWFTK N GQA+P         
Sbjct: 61  RGLTSKRHMKIVLRWMRERQKLRLICNHVGPHKQFLYTTWFTKSNIGQARPVKNSSATSL 120

Query: 405 QGRNSSQPKSP 407
              NSS PKSP
Sbjct: 121 PVNNSSSPKSP 131

The following BLAST results are available for this feature:

BLAST of CmoCh04G008130 vs. Swiss-Prot


Match Name	E-value	Identity	Description
DHR18_ARATH	6.1e-22	50.58	Dehydrin Rab18 OS=Arabidopsis thaliana GN=RAB18 PE=2 SV=1	[more]
DH16B_ORYSJ	5.7e-20	52.08	Dehydrin Rab16B OS=Oryza sativa subsp. japonica GN=RAB16B PE=2 SV=1	[more]
DHN1_AVIMR	1.3e-19	47.80	Dehydrin DHN1 OS=Avicennia marina GN=DHN1 PE=1 SV=1	[more]
DHN1_MAIZE	3.7e-19	47.31	Dehydrin DHN1 OS=Zea mays GN=DHN1 PE=1 SV=2	[more]
DH16B_ORYSI	3.7e-19	50.69	Dehydrin Rab16B OS=Oryza sativa subsp. indica GN=RAB16B PE=2 SV=2	[more]

BLAST of CmoCh04G008130 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWM9_CUCSA	6.7e-60	75.29	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G045040 PE=3 SV=1	[more]
A0A0A0KY02_CUCSA	1.7e-55	89.34	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G045020 PE=4 SV=1	[more]
A0A061EKV8_THECC	3.4e-51	77.86	Uncharacterized protein OS=Theobroma cacao GN=TCM_017340 PE=4 SV=1	[more]
U5GHM4_POPTR	1.7e-50	83.47	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s12090g PE=4 SV=1	[more]
W9S3U6_9ROSA	4.1e-49	81.97	Uncharacterized protein OS=Morus notabilis GN=L484_013253 PE=4 SV=1	[more]

BLAST of CmoCh04G008130 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G49410.1	1.8e-48	76.67	unknown protein	[more]
AT5G66400.1	3.5e-23	50.58	Dehydrin family protein	[more]
AT1G73940.1	3.3e-18	37.14	unknown protein	[more]
AT3G50980.1	2.0e-15	50.39	dehydrin xero 1	[more]
AT2G21490.1	6.5e-14	45.83	dehydrin LEA	[more]

BLAST of CmoCh04G008130 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659102400\|ref\|XP_008452109.1\|	3.3e-60	75.86	PREDICTED: dehydrin DHN1 [Cucumis melo]	[more]
gi\|778690692\|ref\|XP_011653150.1\|	9.7e-60	75.29	PREDICTED: dehydrin DHN1-like [Cucumis sativus]	[more]
gi\|659102404\|ref\|XP_008452111.1\|	6.5e-56	90.98	PREDICTED: uncharacterized protein LOC103493216 [Cucumis melo]	[more]
gi\|449457514\|ref\|XP_004146493.1\|	2.5e-55	89.34	PREDICTED: uncharacterized protein LOC101203168 [Cucumis sativus]	[more]
gi\|590647865\|ref\|XP_007032018.1\|	4.8e-51	77.86	Uncharacterized protein TCM_017340 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000167	Dehydrin

Vocabulary: **Biological Process**
Term	Definition
GO:0006950	response to stress
GO:0009415	response to water

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006950	response to stress
biological_process	GO:0009415	response to water
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G008130.1	CmoCh04G008130.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000167	Dehydrin	PFAM	PF00257	Dehydrin	coord: 8..166 score: 5.7
None	No IPR available	PANTHER	PTHR35110	FAMILY NOT NAMED	coord: 268..402 score: 4.4
None	No IPR available	PANTHER	PTHR35110:SF1	SUBFAMILY NOT NAMED	coord: 268..402 score: 4.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G008130	Cucsa.201060	Cucumber (Gy14) v1	cgycmoB0596
CmoCh04G008130	CmaCh04G007630	Cucurbita maxima (Rimu)	cmacmoB728
CmoCh04G008130	Cp4.1LG01g06900	Cucurbita pepo (Zucchini)	cmocpeB684
CmoCh04G008130	Carg14161	Silver-seed gourd	carcmoB1259

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G008130	Cucurbita moschata (Rifu)	cmocmoB285
CmoCh04G008130	Cucurbita moschata (Rifu)	cmocmoB451
CmoCh04G008130	Cucumber (Gy14) v1	cgycmoB0245
CmoCh04G008130	Cucurbita maxima (Rimu)	cmacmoB337
CmoCh04G008130	Wild cucumber (PI 183967)	cmocpiB715
CmoCh04G008130	Wild cucumber (PI 183967)	cmocpiB775
CmoCh04G008130	Cucumber (Chinese Long) v2	cmocuB705
CmoCh04G008130	Melon (DHL92) v3.5.1	cmomeB686
CmoCh04G008130	Melon (DHL92) v3.5.1	cmomeB702
CmoCh04G008130	Watermelon (Charleston Gray)	cmowcgB641
CmoCh04G008130	Watermelon (Charleston Gray)	cmowcgB670
CmoCh04G008130	Watermelon (97103) v1	cmowmB671
CmoCh04G008130	Watermelon (97103) v1	cmowmB711
CmoCh04G008130	Cucurbita pepo (Zucchini)	cmocpeB655
CmoCh04G008130	Cucurbita pepo (Zucchini)	cmocpeB667
CmoCh04G008130	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G008130	Bottle gourd (USVL1VR-Ls)	cmolsiB632
CmoCh04G008130	Bottle gourd (USVL1VR-Ls)	cmolsiB692
CmoCh04G008130	Melon (DHL92) v3.6.1	cmomedB779
CmoCh04G008130	Cucumber (Gy14) v2	cgybcmoB521
CmoCh04G008130	Melon (DHL92) v3.6.1	cmomedB797
CmoCh04G008130	Silver-seed gourd	carcmoB1371
CmoCh04G008130	Cucumber (Chinese Long) v3	cmocucB0833
CmoCh04G008130	Watermelon (97103) v2	cmowmbB682
CmoCh04G008130	Watermelon (97103) v2	cmowmbB748
CmoCh04G008130	Wax gourd	cmowgoB0843