CmoCh04G005070 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G005070
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionReticulon-like protein
LocationCmo_Chr04 : 2517550 .. 2522523 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGAAATTTTTGGGTGTTGGAATTCTCCGTTTTCCCCCCCTTCAGTTCTTAAATCTTCATCTTTCTCTCTGCTTTCAATTCTTGTTTTCTCTGAAACCCTAATCATGTCCATGGGATCCACTTCTACTCGTCGCATTTCTGTTCATCAAGTGCTCGGCGGTGGTCCTGGTACTTCTCTTCTCTGTTCTGTTCTTTTTGCGATCTTTCTATTTTCGAATTGGAACTTACATTGATGCTTTAGAATTCCCTCCTCGATCTGGGTTTACCTTTTCATGTTTCGATAATGAATTGTTTTGGTCTAATGTCGTTTTCTCGCTATCTTTGTCTGAATTATGTGTTTCATTTGGCTGATTTTTTATGAAATGTTCCGAATTCTATTTCTCGAATTGGCTGATTTTGTTCAATTCTATTAAATTTGTTGTTGGTTCGCTAATTTAGCTATTGATGACAGTCGCTGATATGCTCTTATGGAAGAAATGGTGTGGCGGGGCTGTCATACTCACGTCTACAACAGCTTTGTGGTACCTGTTTGAAAGAGCCGGTTACAACTTCTTATCTTTTGTTGCCAATGTTCTATTGCTTCTTGTCCTCATTCTGTTCGTCTGGGCCAAATCTGCTTCCCTTCTCAATAGGTACTTTGACTCTTCCTTCTGCCAGCTTTTAGTGCTTTACATGGTTTTATTTTCTAATCTCCACTTCTTGTGTTTAAGTTTGTGGATGCGTTATTTTTGTTTTATGGACGATGAATCAAAAGTAAATAACATACATTGTAAAAGAGAACCATTTTATTGTGCAAAATCTTGAGAATAGTTTGTTTGATCAAGGGATTACGACCTTGACCAAACGGTCAGGGTTTGAATCTGCAGCCCACATACAGTTCTGTACAAACTTGGACTCCTTTTTGTGGAACCATTAGTGTAAGAGAAGAACATTGTCAATTTTGTGTTGGAGAAGTAATCGTGTAGATTTTTTGAGATAATATGACTTAGATTGACATGAAATGTATACATTCTCAAGGCTTGAGTTCAATTGGACGTAGAGTAAAAGTTACCTTCTTTTGTGATTCAGACCTCTGCCTCCGCTTCCTGATCTGGAAATTTCTGAGGAATCTGTTTCGATAGTTGCTGATGAACTGCGATTGTGGGTCAATTTTGCACTGTCAATTGCACGTGATATTGCAATAGGAAGAAACCTTAAGCTCTTTCTTCAGGTTAGGGTAATCACTTGTCTTATCGTCTGTGATGACCGCGACTTGTGTGTTAATTTATTCACGTCCTCAGGTTGCTCTTGGACTATGGATTTCATCATTCATTGGCAGTTTCTTCAATTTTCTTACACTGGTCTATTTTGGTGAGTTCTTTGGGGCTCTTATTTCTTTGTAATCAGCGGTTCAAAAATCATATCTATTGCTATCTTTAACAATGTATGCATTCTATCAATATATTTGTTTCAGGGGTCCTTCTCAGTCTTTCAGCTCCACTAGTGTACGATAAGTACCAGGATCCCATTGATGAAAAGTTGTGTGTAACACATAGATATGTACAAATGCAATACAGGAAGCTTGATGAGAATGTCTTAAGGAAGTTACCATTACCCTTAAACAAGGAGAAGAAGATGCAATAGGCACAGCACTCGCTTGATTATCAGTAACTTCAAAAGAAGTGAGCTGGATCTACCTTTTTCATAATGCTCTAACGCCATTTTTGTATTCTGATGTGTCCGATAAATATTATTTCAGATCAACATAGAGTGAGTATTATGTACTTTTATTCTCATGGCTTGTAAAAAAATCTCTTATTTATTCCTTTGTTGTGTGTGTTTCCTTCCTTCAATTTGAGCATCAGCTGATTTCTTTCTGTTGTAATTTAAATACCATCTATTCCTTTATCAAGGATCGTTAGATCTTGAAACTCGTGAACAAGTTCTGGTAGCTTGTGAGATTAGATTACTACCTATTAAGTTTACATGTCCTGCATATTAATATCTCAGAAGCTTTCACAAAATTATTATCATCTAGTTTTCAACTTTTTAGAAATATAATGGCTAATGAATTTGCTGATAGTAAATTTTCTTTTACACAAAGATTTCATTTCGTTAGATGCATTATTAACTAGTTACAAAATCGATTTCCTCTCCTCTTGCCCTGGCTTGTTTGAGAAATAGAAATAGATTTACCTTGATTGTTTGTCCATTGCCTTAGCTTTAATCAAGTCAGCTTCCGCTATTTTAAGAGTTTGCCGATCTTCTTGTAGATCAATGTTCTTGCATAGTAGTCTTTTCCATATCATTTATTAAAATGGGGATCTCATTATTACCCATTTTTTAGCAAAACCACCCATCTGAGTCATCCTTAACCATTGGTCACTAATTATGATTAACTGAACTTGTCAATGAAGTTGAATTCTTGCTTTGAAATTCATTTTCTAGGCCAAAGTAACCAATCTATCTCGTAGTAAAAGATTTAAGTGGGCGATATTATACTGTTCATACAAGTCTTAGATGGGCTGTCCTGATGCTTGAGTGTGTTCTATACTGCAATGGTTTTTTCCAATTTAGTTCAACTAATCATTGCTTCACTGGCAATTTAAGATGATAAGTTTGTGTTTGGTAAGAAAATTTCCATATTGAGATTTATTTCTGGGGCAAATATGACTTGTTATACCTTGATTTTTGTTGGTTGCTGAAAAACTTTAGTTTAGTTTCTTTGTTCATCAAGTGTTAGGTTTTCAAATTTGCATCTGATTTGCTTTGGTTTTACTTGTTGCTACTTTGAAGTACGCAGAGGCACATTGGCTTTCAACAGAGGACGATCAGTAGATTTGAAAATTTCGATCAGAGACATTGAGATTGCTTTTGAATGAGATGTACTTCAGCATTCTAGATCTTTTAGAAAGTTGTGGTATATAACTTAACATAAATGTATCCTGACTTTGACTTCGGGCTGAAAACTAAAAGCATTAATGTTCGGTTTTGGATCGAAATGGTATGGTGTCTTGTAATCACTAGTGTTTGGTTTTGGATTGAACTTTGTTGTTTCAGCTAAATGATTTTGTGATGTAGTTTTTTGGTCTGCTTTCGAGTTCTGCATACGCTTCGGTGCAGATACTCGAACATAGCATCTCGTAACCGATGGAAACTAAAGCCACTTAAACTCGATGTTCAATTAGCAGCACCTTGATCAGTAGAAGACTGAAAATTTATTTATCTTAACATGTTGCTAAGGCTGACTAGTTCCTTTGCCTTTCAGGTGTAATGACAAAGAAAAATGACCCATCTCATGTGACACACATGTAAGTTCCTCCTGAACCTCACTTTTAAGGTAAAACGTCTCGCATCTAGTAGACAATAAACAAATTTATCAAAGACTCGCATGGAATAGAGAAATTATTATTACTGGGACACTCCTGCACCAAAGCACATGTATTTTTGTCTCCTGGTTTGTATGGGGTTCTGCAAAGGACGCAGCTGTTCATATATATTTATTTAAGCTGTCCAATTCATTTACGGTTCTTTATAAAATCCTCAAGTATCTTAGTTATAACCTTTGAGTTTGGTACATCCTGAATTATATATATATATTTCTCTGGAAAGTTGCAAGTAATGGGCACATGGTCTGTGTGCTAAACCGTAGGACGCACAAAAGGTAGCAGAAAAAGGCCAAAAGGAAAGAGAATTTATTGCACTTTTTAAGGGTGTTTGGTTTTTTTGTATTAGATTAATGAATTAGGAGTATACTTGTTCCAAGTTTTGGATTTGATAATCTTACCTCAAAGCATAATACTTTTCATAGATCACAAACTCATAAACCGCTAGCAGATATTGTCTTCTTTGGGCTTTCCCTTCGGGCTTCCCCTCAAGGCTTTAAAATGCGTCTGCTAGGGAAAGGTTTCTGCACCCTTATAAAGGTGTTTCGTTCTCCTCCCCAACCAATGTGGGATAATCACAATCCACTCTTCTTTAGGGCCTAGCGTCCTCGCTGGCACTCGTTCCTTTCTCCAATCGATGTAGGACCACTGCCAAATCCACCCCCTTTGGGGCTCAACGTCCTTACTGGCACACCGCCTTGTGTCTACCTCCCTTCGGGGAACAACCTCCTCACTGGCTCTGATACCATTTGTAACAGCCCAACCCACCGCTAGCAAATATTGTCCTCTTTGGGCTTCCCCTCAAGGCTTTATTAAAATGTGTTTCCTAGGGAAAGGTTTTCACACCCTTGTAAAGGGTGCTTCGTCCTCCTCCCCAACCAATGTGGGATATCAAAATCCACCTCTCTTCAGGGCCCAGTGTCCTCGCTAGCACTGGTTCCTTTCTTCTCCCCAACCAATGTGGGATATCACACCAAGAATCATGTCAAAAGCTTTTGCTACACATTCAGATTTTTCAATTCCTGACTAAGACAACACAGATTCAGATTTCCTTTTAGGAAGCTTTTTGCAGTCAAATTCTTTCTAGTGTTCATAATTGTTACGAAGAAGTGAATTTGAAGCTGCTGATTGATGGGGATAGAGAGATAAATGATGCTTTAAGTAGACGGAAGCATCATTCATGTTTTGTTTTGATTGGTCCAAACTCTTTTTAGATCCAAAGGACGAACGGGGAAGGCAAAGAGCATGCAGTCATGCGTCTCTTAGGGAGACCAACAACACTTTCTGGACAACAGGTTGGCCTTACAGACCCATTATATCAATTTTATCGCTTTCAAAATCACTCTCCTTTCTGATCAACAAACTTATTATCAATCTCAGTTTGATCATGATGAATGCTTCTCAAATTTTTTATTTTTCATTTGTTTTTTGCCCATTTGATCACCATTTTTCAAGAGTATGCTTATGTTCTTACCATTTCTCTATGGGATTTGAAAATTTGATAGTGAAAAAGACAGGATTTTAGGGATGGAATCTTTGACAGTGCAGTGTGGGAATCAGGGCTTGGGTTGGTGTTGGTGTTGGTGTTGGTGGTGGGGTGGTCCTATAA

mRNA sequence

TTGAAATTTTTGGGTGTTGGAATTCTCCGTTTTCCCCCCCTTCAGTTCTTAAATCTTCATCTTTCTCTCTGCTTTCAATTCTTGTTTTCTCTGAAACCCTAATCATGTCCATGGGATCCACTTCTACTCGTCGCATTTCTGTTCATCAAGTGCTCGGCGGTGGTCCTGTCGCTGATATGCTCTTATGGAAGAAATGGTGTGGCGGGGCTGTCATACTCACGTCTACAACAGCTTTGTGGTACCTGTTTGAAAGAGCCGGTTACAACTTCTTATCTTTTGTTGCCAATGTTCTATTGCTTCTTGTCCTCATTCTGTTCGTCTGGGCCAAATCTGCTTCCCTTCTCAATAGACCTCTGCCTCCGCTTCCTGATCTGGAAATTTCTGAGGAATCTGTTTCGATAGTTGCTGATGAACTGCGATTGTGGGTCAATTTTGCACTGTCAATTGCACGTGATATTGCAATAGGAAGAAACCTTAAGCTCTTTCTTCAGATCCAAAGGACGAACGGGGAAGGCAAAGAGCATGCAGTCATGCGTCTCTTAGGGAGACCAACAACACTTTCTGGACAACAGTGCAGTGTGGGAATCAGGGCTTGGGTTGGTGTTGGTGTTGGTGTTGGTGGTGGGGTGGTCCTATAA

Coding sequence (CDS)

ATGTCCATGGGATCCACTTCTACTCGTCGCATTTCTGTTCATCAAGTGCTCGGCGGTGGTCCTGTCGCTGATATGCTCTTATGGAAGAAATGGTGTGGCGGGGCTGTCATACTCACGTCTACAACAGCTTTGTGGTACCTGTTTGAAAGAGCCGGTTACAACTTCTTATCTTTTGTTGCCAATGTTCTATTGCTTCTTGTCCTCATTCTGTTCGTCTGGGCCAAATCTGCTTCCCTTCTCAATAGACCTCTGCCTCCGCTTCCTGATCTGGAAATTTCTGAGGAATCTGTTTCGATAGTTGCTGATGAACTGCGATTGTGGGTCAATTTTGCACTGTCAATTGCACGTGATATTGCAATAGGAAGAAACCTTAAGCTCTTTCTTCAGATCCAAAGGACGAACGGGGAAGGCAAAGAGCATGCAGTCATGCGTCTCTTAGGGAGACCAACAACACTTTCTGGACAACAGTGCAGTGTGGGAATCAGGGCTTGGGTTGGTGTTGGTGTTGGTGTTGGTGGTGGGGTGGTCCTATAA
Homology
[Close]
BLAST of CmoCh04G005070 vs. Swiss-Prot
Match: RTNLK_ARATH (Reticulon-like protein B11 OS=Arabidopsis thaliana GN=RTNLB11 PE=2 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 5.0e-37
Identity = 75/125 (60.00%), Postives = 97/125 (77.60%), Query Frame = 1 

Query: 6   TSTRRISVHQVLGGGPVADMLLWKKWCGGAVILTSTTALWYLFERAGYNFLSFVANVLLL 65
           +S+ R+SVHQ LG G VAD+LLW+   G  ++L S+T  W+LFERAGYN LSFV+NVLLL
Sbjct: 6   SSSSRVSVHQSLGAGSVADLLLWRNRTGAVILLISSTGFWFLFERAGYNLLSFVSNVLLL 65

Query: 66  LVLILFVWAKSASLLNRPLPPLPDLEISEESVSIVADELRLWVNFALSIARDIAIGRNLK 125
           LV I F+WAKSA++LNRPLPP+P++EI EE  +  AD+LR+W+N+ LSIA DI I RN  
Sbjct: 66  LVAIFFLWAKSATVLNRPLPPVPNMEIPEEFANKAADDLRVWINYVLSIASDITIARNPI 125

Query: 126 LFLQI 131
             LQ+
Sbjct: 126 RLLQV 130

[Close]
BLAST of CmoCh04G005070 vs. Swiss-Prot
Match: RTNLJ_ARATH (Reticulon-like protein B10 OS=Arabidopsis thaliana GN=RTNLB10 PE=2 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 7.0e-31
Identity = 65/119 (54.62%), Postives = 89/119 (74.79%), Query Frame = 1 

Query: 12  SVHQVLGGGPVADMLLWKKWCGGAVILTSTTALWYLFERAGYNFLSFVANVLLLLVLILF 71
           SVHQ +  G VAD+++WK   GG ++L STT LW+LFE+ GY+F  FV N  LL V+ILF
Sbjct: 4   SVHQSIRFGSVADLIMWKNRRGGFLLLGSTTLLWFLFEKCGYSFFPFVVNTQLLSVVILF 63

Query: 72  VWAKSASLLNRPLPPLPDLEISEESVSIVADELRLWVNFALSIARDIAIGRNLKLFLQI 131
           +WAKSA L NRP+P LP+LEI+EE V +VAD +R+W+N  L++AR+I +GRN K   ++
Sbjct: 64  LWAKSAILFNRPMPQLPNLEITEEFVFMVADAIRVWINTVLAVAREIYVGRNAKQLFRV 122

[Close]
BLAST of CmoCh04G005070 vs. Swiss-Prot
Match: RTNLL_ARATH (Reticulon-like protein B12 OS=Arabidopsis thaliana GN=RTNLB12 PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.0e-22
Identity = 53/119 (44.54%), Postives = 82/119 (68.91%), Query Frame = 1 

Query: 12  SVHQVLGGGPVADMLLWKKWCGGAVILTSTTALWYLFERAGYNFLSFVANVLLLLVLILF 71
           ++H++LGGG VAD++LW+K      I+T T A W +FE   Y   + +++VLLLL+ ILF
Sbjct: 14  TIHEILGGGIVADVMLWRKKNVSVGIVTVTIASWMVFEAFAYTIFTLISSVLLLLLSILF 73

Query: 72  VWAKSASLLNRPLPPLPDLEISEESVSIVADELRLWVNFALSIARDIAIGRNLKLFLQI 131
           +W+KSAS+LNRP PPLP+ +ISE      +  LR+ VN  L ++ DIA+ R+ +L+ ++
Sbjct: 74  LWSKSASILNRPSPPLPEFQISEAMAEEASIWLRIHVNKLLQVSHDIAMARDSELYTKV 132

[Close]
BLAST of CmoCh04G005070 vs. Swiss-Prot
Match: RTNLP_ARATH (Reticulon-like protein B16 OS=Arabidopsis thaliana GN=RTNLB16 PE=2 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 3.1e-18
Identity = 47/122 (38.52%), Postives = 79/122 (64.75%), Query Frame = 1 

Query: 9   RRISVHQVLGGGPVADMLLWKKWCGGAVILTSTTALWYLFERAGYNFLSFVANVLLLLVL 68
           R+I+VHQ +GGG  AD+LLW++      ++  +T  W +FE +G  FLS  ++VLL++++
Sbjct: 28  RQITVHQFMGGGKAADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLIVIM 87

Query: 69  ILFVWAKSASLLNRPLPPLPDLEISEESVSIVADELRLWVNFALSIARDIAIGRNLKLFL 128
           I FV A+ ++  NR L  LP+L +SEE V+  A   R+ +N  L +A D+ +G + +LF 
Sbjct: 88  ISFVHARVSAFRNRQLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFF 147

Query: 129 QI 131
           ++
Sbjct: 148 KV 149

[Close]
BLAST of CmoCh04G005070 vs. Swiss-Prot
Match: RTNLE_ARATH (Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 6.8e-18
Identity = 48/122 (39.34%), Postives = 75/122 (61.48%), Query Frame = 1 

Query: 9   RRISVHQVLGGGPVADMLLWKKWCGGAVILTSTTALWYLFERAGYNFLSFVANVLLLLVL 68
           R   VH+VLGGG  AD+ LW+       +L   TA+W LFE   Y+ LS + ++ +L + 
Sbjct: 55  REKPVHKVLGGGKPADVFLWRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHISILALG 114

Query: 69  ILFVWAKSASLLNRPLPPLPDLEISEESVSIVADELRLWVNFALSIARDIAIGRNLKLFL 128
            LF+W+ + +L+N+  P +P++ + EE+  +VA  LR  +N A  I R IA+GR+LK FL
Sbjct: 115 GLFLWSNAHTLINKTSPQIPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFL 174

Query: 129 QI 131
            +
Sbjct: 175 MV 176

[Close]
BLAST of CmoCh04G005070 vs. TrEMBL
Match: A0A0A0L980_CUCSA (Reticulon-like protein OS=Cucumis sativus GN=Csa_3G199610 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 2.4e-54
Identity = 111/128 (86.72%), Postives = 120/128 (93.75%), Query Frame = 1 

Query: 3   MGSTSTRRISVHQVLGGGPVADMLLWKKWCGGAVILTSTTALWYLFERAGYNFLSFVANV 62
           +GS S+RRISVHQ LGGG VAD+LLWKKWCGG V+LTS TALWYLFERAGYNFLSFVANV
Sbjct: 2   VGSNSSRRISVHQALGGGHVADVLLWKKWCGGVVMLTSATALWYLFERAGYNFLSFVANV 61

Query: 63  LLLLVLILFVWAKSASLLNRPLPPLPDLEISEESVSIVADELRLWVNFALSIARDIAIGR 122
           LLLLV+ILF WAKSASLLNRPLPPLPDLEISEESVS+VA+ELR  +NFALSIARDIAIGR
Sbjct: 62  LLLLVIILFFWAKSASLLNRPLPPLPDLEISEESVSMVANELRFCINFALSIARDIAIGR 121

Query: 123 NLKLFLQI 131
           NLKLFLQ+
Sbjct: 122 NLKLFLQV 129

[Close]
BLAST of CmoCh04G005070 vs. TrEMBL
Match: A0A061E1Z3_THECC (Reticulon-like protein (Fragment) OS=Theobroma cacao GN=TCM_007136 PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.8e-49
Identity = 98/121 (80.99%), Postives = 112/121 (92.56%), Query Frame = 1 

Query: 10  RISVHQVLGGGPVADMLLWKKWCGGAVILTSTTALWYLFERAGYNFLSFVANVLLLLVLI 69
           R+SVHQ LGGGPVAD+LLW+KWCGG V+L S T LWYLFERAGYNFLSFVANVLLLLV+I
Sbjct: 54  RLSVHQALGGGPVADVLLWRKWCGGVVMLASATTLWYLFERAGYNFLSFVANVLLLLVVI 113

Query: 70  LFVWAKSASLLNRPLPPLPDLEISEESVSIVADELRLWVNFALSIARDIAIGRNLKLFLQ 129
           LF WAKSASLLNRPLPPLP+LEISE++V  VADEL++W+N+ALSIA DIAIGRNLKLFL+
Sbjct: 114 LFFWAKSASLLNRPLPPLPNLEISEKTVGKVADELQVWINYALSIAHDIAIGRNLKLFLE 173

Query: 130 I 131
           +
Sbjct: 174 V 174

[Close]
BLAST of CmoCh04G005070 vs. TrEMBL
Match: A0A061E058_THECC (Reticulon-like protein OS=Theobroma cacao GN=TCM_007136 PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.8e-49
Identity = 98/121 (80.99%), Postives = 112/121 (92.56%), Query Frame = 1 

Query: 10  RISVHQVLGGGPVADMLLWKKWCGGAVILTSTTALWYLFERAGYNFLSFVANVLLLLVLI 69
           R+SVHQ LGGGPVAD+LLW+KWCGG V+L S T LWYLFERAGYNFLSFVANVLLLLV+I
Sbjct: 55  RLSVHQALGGGPVADVLLWRKWCGGVVMLASATTLWYLFERAGYNFLSFVANVLLLLVVI 114

Query: 70  LFVWAKSASLLNRPLPPLPDLEISEESVSIVADELRLWVNFALSIARDIAIGRNLKLFLQ 129
           LF WAKSASLLNRPLPPLP+LEISE++V  VADEL++W+N+ALSIA DIAIGRNLKLFL+
Sbjct: 115 LFFWAKSASLLNRPLPPLPNLEISEKTVGKVADELQVWINYALSIAHDIAIGRNLKLFLE 174

Query: 130 I 131
           +
Sbjct: 175 V 175

[Close]
BLAST of CmoCh04G005070 vs. TrEMBL
Match: D7UC00_VITVI (Reticulon-like protein OS=Vitis vinifera GN=VIT_03s0180g00170 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 3.2e-46
Identity = 91/121 (75.21%), Postives = 109/121 (90.08%), Query Frame = 1 

Query: 10  RISVHQVLGGGPVADMLLWKKWCGGAVILTSTTALWYLFERAGYNFLSFVANVLLLLVLI 69
           RISVHQ LGGG VAD LLW++WCG AV L S ++LW+LFERAGYN LSFVANV+LLLV+I
Sbjct: 9   RISVHQALGGGSVADFLLWRRWCGAAVCLVSASSLWFLFERAGYNLLSFVANVVLLLVVI 68

Query: 70  LFVWAKSASLLNRPLPPLPDLEISEESVSIVADELRLWVNFALSIARDIAIGRNLKLFLQ 129
           LF+WAKSAS+LNRPLPPLPD+EISEESV   AD +R+W+N+ALS+ARDIA+GRN+KLFLQ
Sbjct: 69  LFLWAKSASILNRPLPPLPDMEISEESVVKAADVIRVWINYALSVARDIAVGRNVKLFLQ 128

Query: 130 I 131
           +
Sbjct: 129 V 129

[Close]
BLAST of CmoCh04G005070 vs. TrEMBL
Match: M5W1E2_PRUPE (Reticulon-like protein OS=Prunus persica GN=PRUPE_ppa011505mg PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 2.7e-45
Identity = 96/126 (76.19%), Postives = 106/126 (84.13%), Query Frame = 1 

Query: 5   STSTRRISVHQVLGGGPVADMLLWKKWCGGAVILTSTTALWYLFERAGYNFLSFVANVLL 64
           S   RRISVHQ LGGG VAD+LLWKKW GG ++LTST + W+LFERAGYN LSFVANVLL
Sbjct: 4   SVPPRRISVHQALGGGHVADVLLWKKWSGGVLLLTSTASSWFLFERAGYNLLSFVANVLL 63

Query: 65  LLVLILFVWAKSASLLNRPLPPLPDLEISEESVSIVADELRLWVNFALSIARDIAIGRNL 124
           LLV+ILF+WAKSASLLNRPLPPLPD+EISE SV   AD L  W+N  LSIARDIAIGRN 
Sbjct: 64  LLVVILFLWAKSASLLNRPLPPLPDMEISEASVVKAADALHAWINRVLSIARDIAIGRNW 123

Query: 125 KLFLQI 131
           KLFLQ+
Sbjct: 124 KLFLQV 129

[Close]
BLAST of CmoCh04G005070 vs. TAIR10
Match: AT3G19460.2 (AT3G19460.2 Reticulon family protein)

HSP 1 Score: 136.7 bits (343), Expect = 1.4e-32
Identity = 66/109 (60.55%), Postives = 85/109 (77.98%), Query Frame = 1 

Query: 22  VADMLLWKKWCGGAVILTSTTALWYLFERAGYNFLSFVANVLLLLVLILFVWAKSASLLN 81
           VAD+LLW+   G  ++L S+T  W+LFERAGYN LSFV+NVLLLLV I F+WAKSA++LN
Sbjct: 6   VADLLLWRNRTGAVILLISSTGFWFLFERAGYNLLSFVSNVLLLLVAIFFLWAKSATVLN 65

Query: 82  RPLPPLPDLEISEESVSIVADELRLWVNFALSIARDIAIGRNLKLFLQI 131
           RPLPP+P++EI EE  +  AD+LR+W+N+ LSIA DI I RN    LQ+
Sbjct: 66  RPLPPVPNMEIPEEFANKAADDLRVWINYVLSIASDITIARNPIRLLQV 114

[Close]
BLAST of CmoCh04G005070 vs. TAIR10
Match: AT2G15280.1 (AT2G15280.1 Reticulon family protein)

HSP 1 Score: 135.2 bits (339), Expect = 4.0e-32
Identity = 65/119 (54.62%), Postives = 89/119 (74.79%), Query Frame = 1 

Query: 12  SVHQVLGGGPVADMLLWKKWCGGAVILTSTTALWYLFERAGYNFLSFVANVLLLLVLILF 71
           SVHQ +  G VAD+++WK   GG ++L STT LW+LFE+ GY+F  FV N  LL V+ILF
Sbjct: 4   SVHQSIRFGSVADLIMWKNRRGGFLLLGSTTLLWFLFEKCGYSFFPFVVNTQLLSVVILF 63

Query: 72  VWAKSASLLNRPLPPLPDLEISEESVSIVADELRLWVNFALSIARDIAIGRNLKLFLQI 131
           +WAKSA L NRP+P LP+LEI+EE V +VAD +R+W+N  L++AR+I +GRN K   ++
Sbjct: 64  LWAKSAILFNRPMPQLPNLEITEEFVFMVADAIRVWINTVLAVAREIYVGRNAKQLFRV 122

[Close]
BLAST of CmoCh04G005070 vs. TAIR10
Match: AT3G54120.1 (AT3G54120.1 Reticulon family protein)

HSP 1 Score: 107.1 bits (266), Expect = 1.2e-23
Identity = 53/119 (44.54%), Postives = 82/119 (68.91%), Query Frame = 1 

Query: 12  SVHQVLGGGPVADMLLWKKWCGGAVILTSTTALWYLFERAGYNFLSFVANVLLLLVLILF 71
           ++H++LGGG VAD++LW+K      I+T T A W +FE   Y   + +++VLLLL+ ILF
Sbjct: 14  TIHEILGGGIVADVMLWRKKNVSVGIVTVTIASWMVFEAFAYTIFTLISSVLLLLLSILF 73

Query: 72  VWAKSASLLNRPLPPLPDLEISEESVSIVADELRLWVNFALSIARDIAIGRNLKLFLQI 131
           +W+KSAS+LNRP PPLP+ +ISE      +  LR+ VN  L ++ DIA+ R+ +L+ ++
Sbjct: 74  LWSKSASILNRPSPPLPEFQISEAMAEEASIWLRIHVNKLLQVSHDIAMARDSELYTKV 132

[Close]
BLAST of CmoCh04G005070 vs. TAIR10
Match: AT2G46170.1 (AT2G46170.1 Reticulon family protein)

HSP 1 Score: 92.0 bits (227), Expect = 3.8e-19
Identity = 48/122 (39.34%), Postives = 75/122 (61.48%), Query Frame = 1 

Query: 9   RRISVHQVLGGGPVADMLLWKKWCGGAVILTSTTALWYLFERAGYNFLSFVANVLLLLVL 68
           R   VH+VLGGG  AD+ LW+       +L   TA+W LFE   Y+ LS + ++ +L + 
Sbjct: 55  REKPVHKVLGGGKPADVFLWRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHISILALG 114

Query: 69  ILFVWAKSASLLNRPLPPLPDLEISEESVSIVADELRLWVNFALSIARDIAIGRNLKLFL 128
            LF+W+ + +L+N+  P +P++ + EE+  +VA  LR  +N A  I R IA+GR+LK FL
Sbjct: 115 GLFLWSNAHTLINKTSPQIPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFL 174

Query: 129 QI 131
            +
Sbjct: 175 MV 176

[Close]
BLAST of CmoCh04G005070 vs. TAIR10
Match: AT4G23630.1 (AT4G23630.1 VIRB2-interacting protein 1)

HSP 1 Score: 88.6 bits (218), Expect = 4.2e-18
Identity = 47/122 (38.52%), Postives = 76/122 (62.30%), Query Frame = 1 

Query: 9   RRISVHQVLGGGPVADMLLWK--KWCGGAVILTSTTALWYLFERAGYNFLSFVANVLLLL 68
           R   VH+VLGGG  AD+ +WK  K  GG  +L   TA W +FE   Y+ L+ + +V++++
Sbjct: 76  REQPVHKVLGGGKPADIFMWKNKKMSGG--VLGGATAAWVVFELMEYHLLTLLCHVMIVV 135

Query: 69  VLILFVWAKSASLLNRPLPPLPDLEISEESVSIVADELRLWVNFALSIARDIAIGRNLKL 128
           + +LF+W+ +   +N+  P +P++ I EE +  +A  LR+ +N   S  R+IA GR+LK 
Sbjct: 136 LAVLFLWSNATMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDLKK 195

[Close]
BLAST of CmoCh04G005070 vs. NCBI nr
Match: gi|659112323|ref|XP_008456165.1| (PREDICTED: reticulon-like protein B11 isoform X1 [Cucumis melo])

HSP 1 Score: 224.9 bits (572), Expect = 1.1e-55
Identity = 112/128 (87.50%), Postives = 121/128 (94.53%), Query Frame = 1 

Query: 3   MGSTSTRRISVHQVLGGGPVADMLLWKKWCGGAVILTSTTALWYLFERAGYNFLSFVANV 62
           +GS S+RRISVHQ LGGG VAD+LLWKKWCGG V+LTS TALWYLFERAGYNFLSFVANV
Sbjct: 2   VGSNSSRRISVHQALGGGHVADVLLWKKWCGGVVMLTSATALWYLFERAGYNFLSFVANV 61

Query: 63  LLLLVLILFVWAKSASLLNRPLPPLPDLEISEESVSIVADELRLWVNFALSIARDIAIGR 122
           LLLLV+ILF WAKSASLLNRPLPPLPDLEISEESVS+VA+ELR W+NFALSIARDIAIGR
Sbjct: 62  LLLLVIILFFWAKSASLLNRPLPPLPDLEISEESVSMVANELRFWINFALSIARDIAIGR 121

Query: 123 NLKLFLQI 131
           NLKLFLQ+
Sbjct: 122 NLKLFLQV 129

[Close]
BLAST of CmoCh04G005070 vs. NCBI nr
Match: gi|659112329|ref|XP_008456168.1| (PREDICTED: reticulon-like protein B11 isoform X2 [Cucumis melo])

HSP 1 Score: 224.9 bits (572), Expect = 1.1e-55
Identity = 112/128 (87.50%), Postives = 121/128 (94.53%), Query Frame = 1 

Query: 3   MGSTSTRRISVHQVLGGGPVADMLLWKKWCGGAVILTSTTALWYLFERAGYNFLSFVANV 62
           +GS S+RRISVHQ LGGG VAD+LLWKKWCGG V+LTS TALWYLFERAGYNFLSFVANV
Sbjct: 2   VGSNSSRRISVHQALGGGHVADVLLWKKWCGGVVMLTSATALWYLFERAGYNFLSFVANV 61

Query: 63  LLLLVLILFVWAKSASLLNRPLPPLPDLEISEESVSIVADELRLWVNFALSIARDIAIGR 122
           LLLLV+ILF WAKSASLLNRPLPPLPDLEISEESVS+VA+ELR W+NFALSIARDIAIGR
Sbjct: 62  LLLLVIILFFWAKSASLLNRPLPPLPDLEISEESVSMVANELRFWINFALSIARDIAIGR 121

Query: 123 NLKLFLQI 131
           NLKLFLQ+
Sbjct: 122 NLKLFLQV 129

[Close]
BLAST of CmoCh04G005070 vs. NCBI nr
Match: gi|778680027|ref|XP_004140714.2| (PREDICTED: reticulon-like protein B11 [Cucumis sativus])

HSP 1 Score: 219.9 bits (559), Expect = 3.5e-54
Identity = 111/128 (86.72%), Postives = 120/128 (93.75%), Query Frame = 1 

Query: 3   MGSTSTRRISVHQVLGGGPVADMLLWKKWCGGAVILTSTTALWYLFERAGYNFLSFVANV 62
           +GS S+RRISVHQ LGGG VAD+LLWKKWCGG V+LTS TALWYLFERAGYNFLSFVANV
Sbjct: 2   VGSNSSRRISVHQALGGGHVADVLLWKKWCGGVVMLTSATALWYLFERAGYNFLSFVANV 61

Query: 63  LLLLVLILFVWAKSASLLNRPLPPLPDLEISEESVSIVADELRLWVNFALSIARDIAIGR 122
           LLLLV+ILF WAKSASLLNRPLPPLPDLEISEESVS+VA+ELR  +NFALSIARDIAIGR
Sbjct: 62  LLLLVIILFFWAKSASLLNRPLPPLPDLEISEESVSMVANELRFCINFALSIARDIAIGR 121

Query: 123 NLKLFLQI 131
           NLKLFLQ+
Sbjct: 122 NLKLFLQV 129

[Close]
BLAST of CmoCh04G005070 vs. NCBI nr
Match: gi|590686940|ref|XP_007042525.1| (Reticulon family protein isoform 2, partial [Theobroma cacao])

HSP 1 Score: 203.8 bits (517), Expect = 2.6e-49
Identity = 98/121 (80.99%), Postives = 112/121 (92.56%), Query Frame = 1 

Query: 10  RISVHQVLGGGPVADMLLWKKWCGGAVILTSTTALWYLFERAGYNFLSFVANVLLLLVLI 69
           R+SVHQ LGGGPVAD+LLW+KWCGG V+L S T LWYLFERAGYNFLSFVANVLLLLV+I
Sbjct: 54  RLSVHQALGGGPVADVLLWRKWCGGVVMLASATTLWYLFERAGYNFLSFVANVLLLLVVI 113

Query: 70  LFVWAKSASLLNRPLPPLPDLEISEESVSIVADELRLWVNFALSIARDIAIGRNLKLFLQ 129
           LF WAKSASLLNRPLPPLP+LEISE++V  VADEL++W+N+ALSIA DIAIGRNLKLFL+
Sbjct: 114 LFFWAKSASLLNRPLPPLPNLEISEKTVGKVADELQVWINYALSIAHDIAIGRNLKLFLE 173

Query: 130 I 131
           +
Sbjct: 174 V 174

[Close]
BLAST of CmoCh04G005070 vs. NCBI nr
Match: gi|590686937|ref|XP_007042524.1| (Reticulon family protein isoform 1 [Theobroma cacao])

HSP 1 Score: 203.8 bits (517), Expect = 2.6e-49
Identity = 98/121 (80.99%), Postives = 112/121 (92.56%), Query Frame = 1 

Query: 10  RISVHQVLGGGPVADMLLWKKWCGGAVILTSTTALWYLFERAGYNFLSFVANVLLLLVLI 69
           R+SVHQ LGGGPVAD+LLW+KWCGG V+L S T LWYLFERAGYNFLSFVANVLLLLV+I
Sbjct: 55  RLSVHQALGGGPVADVLLWRKWCGGVVMLASATTLWYLFERAGYNFLSFVANVLLLLVVI 114

Query: 70  LFVWAKSASLLNRPLPPLPDLEISEESVSIVADELRLWVNFALSIARDIAIGRNLKLFLQ 129
           LF WAKSASLLNRPLPPLP+LEISE++V  VADEL++W+N+ALSIA DIAIGRNLKLFL+
Sbjct: 115 LFFWAKSASLLNRPLPPLPNLEISEKTVGKVADELQVWINYALSIAHDIAIGRNLKLFLE 174

Query: 130 I 131
           +
Sbjct: 175 V 175

The following BLAST results are available for this feature:
BLAST of CmoCh04G005070 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RTNLK_ARATH5.0e-3760.00Reticulon-like protein B11 OS=Arabidopsis thaliana GN=RTNLB11 PE=2 SV=1[more]
RTNLJ_ARATH7.0e-3154.62Reticulon-like protein B10 OS=Arabidopsis thaliana GN=RTNLB10 PE=2 SV=1[more]
RTNLL_ARATH2.0e-2244.54Reticulon-like protein B12 OS=Arabidopsis thaliana GN=RTNLB12 PE=2 SV=1[more]
RTNLP_ARATH3.1e-1838.52Reticulon-like protein B16 OS=Arabidopsis thaliana GN=RTNLB16 PE=2 SV=1[more]
RTNLE_ARATH6.8e-1839.34Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1 SV=1[more]
BLAST of CmoCh04G005070 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L980_CUCSA2.4e-5486.72Reticulon-like protein OS=Cucumis sativus GN=Csa_3G199610 PE=4 SV=1[more]
A0A061E1Z3_THECC1.8e-4980.99Reticulon-like protein (Fragment) OS=Theobroma cacao GN=TCM_007136 PE=4 SV=1[more]
A0A061E058_THECC1.8e-4980.99Reticulon-like protein OS=Theobroma cacao GN=TCM_007136 PE=4 SV=1[more]
D7UC00_VITVI3.2e-4675.21Reticulon-like protein OS=Vitis vinifera GN=VIT_03s0180g00170 PE=4 SV=1[more]
M5W1E2_PRUPE2.7e-4576.19Reticulon-like protein OS=Prunus persica GN=PRUPE_ppa011505mg PE=4 SV=1[more]
BLAST of CmoCh04G005070 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G19460.21.4e-3260.55 Reticulon family protein[more]
AT2G15280.14.0e-3254.62 Reticulon family protein[more]
AT3G54120.11.2e-2344.54 Reticulon family protein[more]
AT2G46170.13.8e-1939.34 Reticulon family protein[more]
AT4G23630.14.2e-1838.52 VIRB2-interacting protein 1[more]
BLAST of CmoCh04G005070 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659112323|ref|XP_008456165.1|1.1e-5587.50PREDICTED: reticulon-like protein B11 isoform X1 [Cucumis melo][more]
gi|659112329|ref|XP_008456168.1|1.1e-5587.50PREDICTED: reticulon-like protein B11 isoform X2 [Cucumis melo][more]
gi|778680027|ref|XP_004140714.2|3.5e-5486.72PREDICTED: reticulon-like protein B11 [Cucumis sativus][more]
gi|590686940|ref|XP_007042525.1|2.6e-4980.99Reticulon family protein isoform 2, partial [Theobroma cacao][more]
gi|590686937|ref|XP_007042524.1|2.6e-4980.99Reticulon family protein isoform 1 [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003388Reticulon
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006468 protein phosphorylation
cellular_component GO:0005789 endoplasmic reticulum membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005524 ATP binding
molecular_function GO:0005515 protein binding
molecular_function GO:0004672 protein kinase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G005070.1CmoCh04G005070.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003388ReticulonPFAMPF02453Reticuloncoord: 22..129
score: 1.5
IPR003388ReticulonPROFILEPS50845RETICULONcoord: 22..130
score: 17
NoneNo IPR availablePANTHERPTHR10994RETICULONcoord: 8..130
score: 7.3
NoneNo IPR availablePANTHERPTHR10994:SF77RETICULON-LIKE PROTEIN B10-RELATEDcoord: 8..130
score: 7.3

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh04G005070Cucsa.244630Cucumber (Gy14) v1cgycmoB0687
CmoCh04G005070CmaCh16G003440Cucurbita maxima (Rimu)cmacmoB338
CmoCh04G005070CmaCh04G004730Cucurbita maxima (Rimu)cmacmoB728
CmoCh04G005070Cla013096Watermelon (97103) v1cmowmB699
CmoCh04G005070Csa3G199610Cucumber (Chinese Long) v2cmocuB687
CmoCh04G005070MELO3C019545Melon (DHL92) v3.5.1cmomeB683
CmoCh04G005070ClCG05G010270Watermelon (Charleston Gray)cmowcgB660
CmoCh04G005070CSPI03G18160Wild cucumber (PI 183967)cmocpiB698
CmoCh04G005070Lsi05G002360Bottle gourd (USVL1VR-Ls)cmolsiB683
CmoCh04G005070Cp4.1LG01g02500Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G005070MELO3C019545.2Melon (DHL92) v3.6.1cmomedB774
CmoCh04G005070CsaV3_3G018220Cucumber (Chinese Long) v3cmocucB0814
CmoCh04G005070Cla97C05G092650Watermelon (97103) v2cmowmbB735
CmoCh04G005070Bhi01G001280Wax gourdcmowgoB0849
CmoCh04G005070CsGy3G018050Cucumber (Gy14) v2cgybcmoB386
CmoCh04G005070Carg08144Silver-seed gourdcarcmoB0514
CmoCh04G005070Carg19666Silver-seed gourdcarcmoB0403
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh04G005070CmoCh16G003660Cucurbita moschata (Rifu)cmocmoB286
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G005070Wild cucumber (PI 183967)cmocpiB777
CmoCh04G005070Cucumber (Chinese Long) v2cmocuB766
CmoCh04G005070Cucumber (Chinese Long) v2cmocuB769
CmoCh04G005070Melon (DHL92) v3.5.1cmomeB665
CmoCh04G005070Melon (DHL92) v3.5.1cmomeB703
CmoCh04G005070Watermelon (Charleston Gray)cmowcgB645
CmoCh04G005070Watermelon (97103) v1cmowmB721
CmoCh04G005070Cucurbita pepo (Zucchini)cmocpeB668
CmoCh04G005070Cucurbita pepo (Zucchini)cmocpeB703
CmoCh04G005070Bottle gourd (USVL1VR-Ls)cmolsiB627
CmoCh04G005070Bottle gourd (USVL1VR-Ls)cmolsiB650
CmoCh04G005070Bottle gourd (USVL1VR-Ls)cmolsiB666
CmoCh04G005070Bottle gourd (USVL1VR-Ls)cmolsiB701
CmoCh04G005070Cucumber (Gy14) v2cgybcmoB235
CmoCh04G005070Cucumber (Gy14) v2cgybcmoB527
CmoCh04G005070Cucumber (Gy14) v2cgybcmoB822
CmoCh04G005070Cucumber (Gy14) v2cgybcmoB949
CmoCh04G005070Melon (DHL92) v3.6.1cmomedB751
CmoCh04G005070Melon (DHL92) v3.6.1cmomedB765
CmoCh04G005070Melon (DHL92) v3.6.1cmomedB783
CmoCh04G005070Melon (DHL92) v3.6.1cmomedB800
CmoCh04G005070Silver-seed gourdcarcmoB0616
CmoCh04G005070Cucumber (Chinese Long) v3cmocucB0811
CmoCh04G005070Cucumber (Chinese Long) v3cmocucB0839
CmoCh04G005070Cucumber (Chinese Long) v3cmocucB0905
CmoCh04G005070Cucumber (Chinese Long) v3cmocucB0910
CmoCh04G005070Watermelon (97103) v2cmowmbB717
CmoCh04G005070Watermelon (97103) v2cmowmbB742
CmoCh04G005070Watermelon (97103) v2cmowmbB766
CmoCh04G005070Wax gourdcmowgoB0856
CmoCh04G005070Wax gourdcmowgoB0872
CmoCh04G005070Wax gourdcmowgoB0880
CmoCh04G005070Wax gourdcmowgoB0916
CmoCh04G005070Cucurbita moschata (Rifu)cmocmoB125
CmoCh04G005070Cucurbita moschata (Rifu)cmocmoB395
CmoCh04G005070Cucurbita moschata (Rifu)cmocmoB477
CmoCh04G005070Cucumber (Gy14) v1cgycmoB0228
CmoCh04G005070Cucumber (Gy14) v1cgycmoB0632
CmoCh04G005070Cucurbita maxima (Rimu)cmacmoB156
CmoCh04G005070Cucurbita maxima (Rimu)cmacmoB530