CmoCh04G003940 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G003940
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description(Tyrosine--tRNA ligase) (6.1.1.1)
LocationCmo_Chr04 : 1942275 .. 1943750 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGATGGCTGCTTCTGCTCGCAGCTCCATGACCTTCCTTCTCTCTCAGCGGACCCTCTTCTTCTCCAATTCCATCATTTCCTCTAAGCCCTCTTTGTCCTTCTCCCTCAAAAGCACTTTCAGCTGCCTCGCTTCCTCTGCAAGTTCTCTCCAATCTTCCACTCTCGAGCCCCAAACCGCTTCTCGGCGCAACGTCGTCGAAATTCTCGAAGAACGAGGCCTTCTCGAGTCCATCACCAGCGACAATCTCCGCTCTGCTTGTCTCAGCCCTCTCAAGGTCTATTGCGGCTTCGACCCCACTGCCGAGAGCTTACATTTAGGTAATCTTCTTGGTCTCATCGTCCTCTCTTGGTTTCGCCGATGCGGCCACACCACCGTCGCTCTCATCGGCGGCGCCACTGCCCGCGTCGGCGATCCCTCAGGCAAGAGCCTTGAACGGCCAGAGCTCGATCTCCAGACCTTGGAGACCAACACTCTCGGAATTACAAATATTATAACTAGAATTTTGGGGAACTCGGGCTTGGATTCCAATTTTAGCTCTGATTTTGTGATTCTTAATAATTACGATTGGTGGAAGGAGTTCAGATTTCTAGATTTCTTGAAAGAAGTAGGTCGGTTTGCTAGAGTAGGAACGATGATGGCTAAGGAGAGCGTTAAGAGGAGATTGGAATCGGATCAAGGAATGAGCTATACTGAATTTACTTACCAGCTCTTGCAGGGATATGATTTTCTGTATCTGTATCAAAACCAGGGCGTTTCTGTTCAGATTGGAGGAAGTGATCAATGGGGGAATATCACTGCAGGGACTGAGCTCATTAGGAAAATTTTGCCACAGGCTGATGGCGTTTATGGCTTGACATTCCCTCTTCTTCTGAAGAGCGATGGCACCAAATTCGGCAAGTCCGTAGACGGCGCCATTTGGCTTTCGCCATCGAAGTTATCTCCATACAAGTTTTATCAGTATTTCTTCAGTGTCCCAGATGCAGATGTGATTAGATTTCTCAGAATTCTCACGTTTTTGGATATTGAGGAGATTCGAGACTTGGAAAGTCAAATGGCTAGCCCTGGATATGTACCGAACACGGCGCAGAGGCGGCTGGCCGAAGAAGTTACTCGATTTGTTCATGGAGAAGATGGTTTGAATGAGGCCCTTGAGGCCACTGAAGCATTGAAACCAGGAGCAGAGACAAAGTTGGATTGGAAGACTATTGTGGGGATTGGTGAGGATGTTCCATGCTGCTCGTTGGAGTACGATCAAGTGTTGAATCTTTCGGTTGTCGATCTTGCAGTTATGTCTGGTTTGCTCGAAAGCAAGTCGGCTGCCCGTCGTTTGCTGAAGCAAGGGGGACTCTATTTGAATAACAGTAGAGTGGATTCTGAGAGTAAAAAAATTGAAGCTATAGACATTATTGATGGGAAAGTTCTACTTTTATCTGCAGGAAAGAAGAACAAGATGGTTGTGAGGATATCATAA

mRNA sequence

ATGGCGATGGCTGCTTCTGCTCGCAGCTCCATGACCTTCCTTCTCTCTCAGCGGACCCTCTTCTTCTCCAATTCCATCATTTCCTCTAAGCCCTCTTTGTCCTTCTCCCTCAAAAGCACTTTCAGCTGCCTCGCTTCCTCTGCAAGTTCTCTCCAATCTTCCACTCTCGAGCCCCAAACCGCTTCTCGGCGCAACGTCGTCGAAATTCTCGAAGAACGAGGCCTTCTCGAGTCCATCACCAGCGACAATCTCCGCTCTGCTTGTCTCAGCCCTCTCAAGGTCTATTGCGGCTTCGACCCCACTGCCGAGAGCTTACATTTAGGTAATCTTCTTGGTCTCATCGTCCTCTCTTGGTTTCGCCGATGCGGCCACACCACCGTCGCTCTCATCGGCGGCGCCACTGCCCGCGTCGGCGATCCCTCAGGCAAGAGCCTTGAACGGCCAGAGCTCGATCTCCAGACCTTGGAGACCAACACTCTCGGAATTACAAATATTATAACTAGAATTTTGGGGAACTCGGGCTTGGATTCCAATTTTAGCTCTGATTTTGTGATTCTTAATAATTACGATTGGTGGAAGGAGTTCAGATTTCTAGATTTCTTGAAAGAAGTAGGTCGGTTTGCTAGAGTAGGAACGATGATGGCTAAGGAGAGCGTTAAGAGGAGATTGGAATCGGATCAAGGAATGAGCTATACTGAATTTACTTACCAGCTCTTGCAGGGATATGATTTTCTGTATCTGTATCAAAACCAGGGCGTTTCTGTTCAGATTGGAGGAAGTGATCAATGGGGGAATATCACTGCAGGGACTGAGCTCATTAGGAAAATTTTGCCACAGGCTGATGGCGTTTATGGCTTGACATTCCCTCTTCTTCTGAAGAGCGATGGCACCAAATTCGGCAAGTCCGTAGACGGCGCCATTTGGCTTTCGCCATCGAAGTTATCTCCATACAAGTTTTATCAGTATTTCTTCAGTGTCCCAGATGCAGATGTGATTAGATTTCTCAGAATTCTCACGTTTTTGGATATTGAGGAGATTCGAGACTTGGAAAGTCAAATGGCTAGCCCTGGATATGTACCGAACACGGCGCAGAGGCGGCTGGCCGAAGAAGTTACTCGATTTGTTCATGGAGAAGATGGTTTGAATGAGGCCCTTGAGGCCACTGAAGCATTGAAACCAGGAGCAGAGACAAAGTTGGATTGGAAGACTATTGTGGGGATTGGTGAGGATGTTCCATGCTGCTCGTTGGAGTACGATCAAGTGTTGAATCTTTCGGTTGTCGATCTTGCAGTTATGTCTGGTTTGCTCGAAAGCAAGTCGGCTGCCCGTCGTTTGCTGAAGCAAGGGGGACTCTATTTGAATAACAGTAGAGTGGATTCTGAGAGTAAAAAAATTGAAGCTATAGACATTATTGATGGGAAAGTTCTACTTTTATCTGCAGGAAAGAAGAACAAGATGGTTGTGAGGATATCATAA

Coding sequence (CDS)

ATGGCGATGGCTGCTTCTGCTCGCAGCTCCATGACCTTCCTTCTCTCTCAGCGGACCCTCTTCTTCTCCAATTCCATCATTTCCTCTAAGCCCTCTTTGTCCTTCTCCCTCAAAAGCACTTTCAGCTGCCTCGCTTCCTCTGCAAGTTCTCTCCAATCTTCCACTCTCGAGCCCCAAACCGCTTCTCGGCGCAACGTCGTCGAAATTCTCGAAGAACGAGGCCTTCTCGAGTCCATCACCAGCGACAATCTCCGCTCTGCTTGTCTCAGCCCTCTCAAGGTCTATTGCGGCTTCGACCCCACTGCCGAGAGCTTACATTTAGGTAATCTTCTTGGTCTCATCGTCCTCTCTTGGTTTCGCCGATGCGGCCACACCACCGTCGCTCTCATCGGCGGCGCCACTGCCCGCGTCGGCGATCCCTCAGGCAAGAGCCTTGAACGGCCAGAGCTCGATCTCCAGACCTTGGAGACCAACACTCTCGGAATTACAAATATTATAACTAGAATTTTGGGGAACTCGGGCTTGGATTCCAATTTTAGCTCTGATTTTGTGATTCTTAATAATTACGATTGGTGGAAGGAGTTCAGATTTCTAGATTTCTTGAAAGAAGTAGGTCGGTTTGCTAGAGTAGGAACGATGATGGCTAAGGAGAGCGTTAAGAGGAGATTGGAATCGGATCAAGGAATGAGCTATACTGAATTTACTTACCAGCTCTTGCAGGGATATGATTTTCTGTATCTGTATCAAAACCAGGGCGTTTCTGTTCAGATTGGAGGAAGTGATCAATGGGGGAATATCACTGCAGGGACTGAGCTCATTAGGAAAATTTTGCCACAGGCTGATGGCGTTTATGGCTTGACATTCCCTCTTCTTCTGAAGAGCGATGGCACCAAATTCGGCAAGTCCGTAGACGGCGCCATTTGGCTTTCGCCATCGAAGTTATCTCCATACAAGTTTTATCAGTATTTCTTCAGTGTCCCAGATGCAGATGTGATTAGATTTCTCAGAATTCTCACGTTTTTGGATATTGAGGAGATTCGAGACTTGGAAAGTCAAATGGCTAGCCCTGGATATGTACCGAACACGGCGCAGAGGCGGCTGGCCGAAGAAGTTACTCGATTTGTTCATGGAGAAGATGGTTTGAATGAGGCCCTTGAGGCCACTGAAGCATTGAAACCAGGAGCAGAGACAAAGTTGGATTGGAAGACTATTGTGGGGATTGGTGAGGATGTTCCATGCTGCTCGTTGGAGTACGATCAAGTGTTGAATCTTTCGGTTGTCGATCTTGCAGTTATGTCTGGTTTGCTCGAAAGCAAGTCGGCTGCCCGTCGTTTGCTGAAGCAAGGGGGACTCTATTTGAATAACAGTAGAGTGGATTCTGAGAGTAAAAAAATTGAAGCTATAGACATTATTGATGGGAAAGTTCTACTTTTATCTGCAGGAAAGAAGAACAAGATGGTTGTGAGGATATCATAA
Homology
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BLAST of CmoCh04G003940 vs. Swiss-Prot
Match: SYYM_ARATH (Tyrosine--tRNA ligase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=EMB2768 PE=2 SV=1)

HSP 1 Score: 649.4 bits (1674), Expect = 3.1e-185
Identity = 328/462 (71.00%), Postives = 381/462 (82.47%), Query Frame = 1 

Query: 34  SFSLKSTFSCLASSASSLQSSTLEPQTASRRNVVEILEERGLLESITSDNLRSAC----L 93
           S S  + FS +  S  S  S   E Q   R NVV+ILEERGLLESITS+NLRSAC    +
Sbjct: 53  STSTTTLFSSVKCSIHSTSSPETENQAVFRPNVVDILEERGLLESITSENLRSACSDPKV 112

Query: 94  SPLKVYCGFDPTAESLHLGNLLGLIVLSWFRRCGHTTVALIGGATARVGDPSGKSLERPE 153
           +PL+VYCGFDPTAESLHLGNLLG+IVLSWF+RCGH  V LIGGAT RVGDPSGKSLERPE
Sbjct: 113 APLRVYCGFDPTAESLHLGNLLGIIVLSWFQRCGHQAVGLIGGATGRVGDPSGKSLERPE 172

Query: 154 LDLQTLETNTLGITNIITRILGNSGLDSNFSSDFVILNNYDWWKEFRFLDFLKEVGRFAR 213
           LD  TLE N  GIT II +ILG++    +    +VI NNYDWWK+   LDFL +VGRFAR
Sbjct: 173 LDADTLEKNIAGITKIIIKILGSN---PSPGGSYVIFNNYDWWKDMTMLDFLNKVGRFAR 232

Query: 214 VGTMMAKESVKRRLESDQGMSYTEFTYQLLQGYDFLYLYQNQGVSVQIGGSDQWGNITAG 273
           VGTMMAKESVK+RLES+QGMSYTEFTYQLLQ YDFL+L++N+G++VQIGGSDQWGNITAG
Sbjct: 233 VGTMMAKESVKKRLESEQGMSYTEFTYQLLQAYDFLHLFKNEGINVQIGGSDQWGNITAG 292

Query: 274 TELIRKILPQADGVYGLTFPLLLKSDGTKFGKSVDGAIWLSPSKLSPYKFYQYFFSVPDA 333
           T+LIRKIL   +  YGLTFPLLLK+DGTKFGKS DGAIWLSPS LSPYKFYQYFFSVPD 
Sbjct: 293 TDLIRKILQAEEAAYGLTFPLLLKNDGTKFGKSEDGAIWLSPSMLSPYKFYQYFFSVPDV 352

Query: 334 DVIRFLRILTFLDIEEIRDLESQMASPGYVPNTAQRRLAEEVTRFVHGEDGLNEALEATE 393
           DVIRFL+ LTFL ++EI+ LE QM+ PGYVPNTAQ +LAEEVTRFVHGE+GL EA++ATE
Sbjct: 353 DVIRFLKTLTFLSLDEIKILEDQMSKPGYVPNTAQIKLAEEVTRFVHGEEGLKEAIKATE 412

Query: 394 ALKPGAETKLDWKTIVGIGEDVPCCSLEYDQVLNLSVVDLAVMSGLLESKSAARRLLKQG 453
           AL+PGAETKLDW  I  I ED+P CSL  D+V  LS+VDL+V +GL ESKSAARR+LKQG
Sbjct: 413 ALRPGAETKLDWNLIERIAEDIPSCSLPIDRVSGLSIVDLSVSAGLFESKSAARRMLKQG 472

Query: 454 GLYLNNSRVDSESKKIEAIDIIDGKVLLLSAGKKNKMVVRIS 492
           G Y+NN RVD E+K+++  DI++G+ L+LSAGKKNK+VVRIS
Sbjct: 473 GFYMNNERVDDENKRVDEEDIVEGRGLVLSAGKKNKVVVRIS 511

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BLAST of CmoCh04G003940 vs. Swiss-Prot
Match: SYY_PARUW (Tyrosine--tRNA ligase OS=Protochlamydia amoebophila (strain UWE25) GN=tyrS PE=3 SV=1)

HSP 1 Score: 469.2 bits (1206), Expect = 5.7e-131
Identity = 226/427 (52.93%), Postives = 314/427 (73.54%), Query Frame = 1 

Query: 65  NVVEILEERGLLESITSDNLRSACLSPLKVYCGFDPTAESLHLGNLLGLIVLSWFRRCGH 124
           NV+++L ERG ++++TS+ +R     P+KVYCGFDPTA+SLHLGNL+ ++ L+WF+R GH
Sbjct: 3   NVMDVLRERGFIDAVTSEEIRQLTNQPIKVYCGFDPTADSLHLGNLVAIMGLAWFQRFGH 62

Query: 125 TTVALIGGATARVGDPSGKSLERPELDLQTLETNTLGITNIITRILGNSGLDSNF-SSDF 184
           T VA++GGAT  +GDPSGK+ ER  LD + ++ N  GI+  +  IL     D N  ++  
Sbjct: 63  TPVAIVGGATGMIGDPSGKNAERQLLDEKKIQLNLKGISKNLEAIL-----DFNHPTAPA 122

Query: 185 VILNNYDWWKEFRFLDFLKEVGRFARVGTMMAKESVKRRLESDQGMSYTEFTYQLLQGYD 244
           +ILNN DW+K F F+ FL++VG+  R+  M+AK+SVK RL S++GMS+TEF YQ+LQGYD
Sbjct: 123 IILNNLDWFKNFTFISFLRDVGKLFRLSPMLAKDSVKTRLNSEEGMSFTEFCYQILQGYD 182

Query: 245 FLYLYQNQGVSVQIGGSDQWGNITAGTELIRKILPQADGVYGLTFPLLLKSDGTKFGKSV 304
           FL+L++N GV+V++GGSDQWGNITAGT+LIRK+   A   YG+TFPLL KSDG KFGKS 
Sbjct: 183 FLHLFENYGVTVELGGSDQWGNITAGTDLIRKV--HAKPAYGITFPLLTKSDGQKFGKSE 242

Query: 305 DGAIWLSPSKLSPYKFYQYFFSVPDADVIRFLRILTFLDIEEIRDLESQMASPGYVPNTA 364
            GA+WLSP KLS Y+FYQ+   V DADVI  +R+LTFLD+ EIR  E  M    YVP TA
Sbjct: 243 KGAVWLSPDKLSSYEFYQHLIRVEDADVINLMRMLTFLDMGEIRHYEQMMKEADYVPRTA 302

Query: 365 QRRLAEEVTRFVHGEDGLNEALEATEALKPGAETKLDWKTIVGIGEDVPCCSLEYDQVLN 424
           Q+RLAEE+TR VHGE+GL  A++ TE + PG++T L+   +  +  D+P C ++ + VLN
Sbjct: 303 QKRLAEEITRLVHGEEGLKIAIKVTEGVAPGSQTSLNADILEKLAADMPSCEMKLENVLN 362

Query: 425 LSVVDLAVMSGLLESKSAARRLLKQGGLYLNNSRVDSESKKIEAIDIIDGKVLLLSAGKK 484
             ++DL V + L  SKS ARRLL+ GG+Y+NN +++ E+  I    +I  +++LL+AGKK
Sbjct: 363 KKLIDLLVETKLQTSKSEARRLLRNGGVYINNKKIEDENHIISVECLISSRLILLAAGKK 422

Query: 485 NKMVVRI 491
           NKM++R+
Sbjct: 423 NKMIIRL 422

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BLAST of CmoCh04G003940 vs. Swiss-Prot
Match: SYY_ROSS1 (Tyrosine--tRNA ligase OS=Roseiflexus sp. (strain RS-1) GN=tyrS PE=3 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 2.3e-92
Identity = 186/428 (43.46%), Postives = 271/428 (63.32%), Query Frame = 1 

Query: 66  VVEILEERGLLESITSDNLRSACLSP-LKVYCGFDPTAESLHLGNLLGLIVLSWFRRCGH 125
           +++ L  RGLL   +SD L        + +Y GFDP+A+SLH+G+LL L+ L+ F+R GH
Sbjct: 4   ILDELRWRGLLYE-SSDGLDELLTRERVTLYIGFDPSADSLHIGHLLPLLTLARFQRWGH 63

Query: 126 TTVALIGGATARVGDPSGKSLERPELDLQTLETNTLGITNIITRILGNSGLDSNFSSDFV 185
           T +AL GG T  +GDPSGK+ ERP L  + +  N   I   + + L  +  D +     +
Sbjct: 64  TPIALAGGGTGLIGDPSGKTQERPLLSKEQVAANVEAIKGQLAQFLDFNAGDHSA----L 123

Query: 186 ILNNYDWWKEFRFLDFLKEVGRFARVGTMMAKESVKRRLESDQGMSYTEFTYQLLQGYDF 245
           +LNN DW      +DFL++VG+   V  M+AK+SV+ R+ S+ G+S+TEF+Y LLQ YDF
Sbjct: 124 LLNNADWLTRLSLMDFLRDVGKHLTVNYMLAKDSVRSRMTSETGISFTEFSYMLLQAYDF 183

Query: 246 LYLYQNQGVSVQIGGSDQWGNITAGTELIRKILPQADGVYGLTFPLLLKSDGTKFGKSVD 305
            YL+++ G  +Q GGSDQWGNITAG ELIR+ L Q    YGL +PL+ K+DGTKFGK+  
Sbjct: 184 AYLFEHYGCKLQAGGSDQWGNITAGIELIRRTLGQK--AYGLVYPLVTKADGTKFGKTES 243

Query: 306 GAIWLSPSKLSPYKFYQYFFSVPDADVIRFLRILTFLDIEEIRDLESQMASPGYVPNTAQ 365
           GA+WL P + SPY+FYQ++++V DADV ++LR  T+L  +EI +LE   AS      TAQ
Sbjct: 244 GAVWLDPKRTSPYRFYQFWYNVDDADVGKYLRYFTWLSADEIEELERITASQP-ERRTAQ 303

Query: 366 RRLAEEVTRFVHGEDGLNEALEATEALKPGAETKLDWKTIVGIGEDVPCCSLEYDQVL-- 425
           +RLA EVTR VHGE  L  A EA++AL  G+  +L    ++ I EDVP  +L        
Sbjct: 304 QRLAREVTRMVHGETALARAEEASQALFGGSLARLSAGDVIDIFEDVPSTTLPRQDFEGD 363

Query: 426 NLSVVDLAVMSGLLESKSAARRLLKQGGLYLNNSRVDSESKKIEAIDIIDGKVLLLSAGK 485
              ++D+ +  G+  SKS ARR ++ GG+Y+NN +     +++   D IDG+ ++L  G+
Sbjct: 364 GFPLIDVLLRCGIATSKSDARRTIEGGGIYVNNIQCPDVGRRLTLNDSIDGQFIVLRKGR 423

Query: 486 KNKMVVRI 491
           K   +V++
Sbjct: 424 KQYHLVKV 423

[Close]
BLAST of CmoCh04G003940 vs. Swiss-Prot
Match: SYY_BACTN (Tyrosine--tRNA ligase OS=Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) GN=tyrS PE=3 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 4.0e-92
Identity = 190/428 (44.39%), Postives = 268/428 (62.62%), Query Frame = 1 

Query: 65  NVVEILEERGLLESITSDNLRSACLSPLKVYCGFDPTAESLHLGNLLGLIVLSWFRRCGH 124
           N VE L  RG+L+ I            +  Y G DPTA+SLH+G+L G+++L   +RCGH
Sbjct: 2   NFVEELRWRGMLQDIMPGTEELLNKEQVTAYLGIDPTADSLHIGHLCGVMILRHLQRCGH 61

Query: 125 TTVALIGGATARVGDPSGKSLERPELDLQTLETNTLGITNIITRILGNSGLDSNFSSDFV 184
             +ALIGGAT  +GDPSGKS ER  L+ +TL  N   I   + + L     +S+  +   
Sbjct: 62  KPLALIGGATGMIGDPSGKSAERNLLNEETLRHNQACIKKQLAKFL---DFESDVPNRAE 121

Query: 185 ILNNYDWWKEFRFLDFLKEVGRFARVGTMMAKESVKRRL--ESDQGMSYTEFTYQLLQGY 244
           ++NNYDW KEF FLDF++EVG+   V  MMAK+SVKRRL  E+  G+S+TEFTYQLLQGY
Sbjct: 122 LVNNYDWMKEFSFLDFVREVGKHITVNYMMAKDSVKRRLNGEARDGLSFTEFTYQLLQGY 181

Query: 245 DFLYLYQNQGVSVQIGGSDQWGNITAGTELIRKILPQADGVYGLTFPLLLKSDGTKFGKS 304
           DFL+LY+ +G  +Q+GGSDQWGNIT G ELIR+       V+ LT PL+ K+DG KFGK+
Sbjct: 182 DFLHLYETKGCKLQMGGSDQWGNITTGAELIRR--TNGGEVFALTCPLITKADGGKFGKT 241

Query: 305 VDGAIWLSPSKLSPYKFYQYFFSVPDADVIRFLRILTFLDIEEIRDLESQMASPGYVPNT 364
             G IWL P   SPYKFYQ++ +V D+D  R+++I T ++ EEI  L ++     ++   
Sbjct: 242 ESGNIWLDPRYTSPYKFYQFWLNVSDSDAERYIKIFTSIEKEEIEALVAEHQQAPHL-RA 301

Query: 365 AQRRLAEEVTRFVHGEDGLNEALEATEALKPGAET----KLDWKTIVGIGEDVPCCSLEY 424
            Q+RLA+EVT  VH E+  N A++A+  L   A +    KLD  T++ + E VP   +  
Sbjct: 302 LQKRLAKEVTIMVHSEEDYNAAVDASNILFGNATSESLRKLDEDTLLAVFEGVPQFEISR 361

Query: 425 DQVL-NLSVVDLAV-MSGLLESKSAARRLLKQGGLYLNNSRVDSESKKIEAIDIIDGKVL 484
           D +   +  VDL V  + +  SK   R+L++ GG+ LN  ++++  + I   D++DGK L
Sbjct: 362 DALAEGVKAVDLFVDNAAVFASKGEMRKLVQGGGVSLNKEKLEAFDQVITTADLLDGKYL 421

[Close]
BLAST of CmoCh04G003940 vs. Swiss-Prot
Match: SYY_BACFR (Tyrosine--tRNA ligase OS=Bacteroides fragilis (strain YCH46) GN=tyrS PE=3 SV=1)

HSP 1 Score: 339.7 bits (870), Expect = 5.2e-92
Identity = 192/432 (44.44%), Postives = 267/432 (61.81%), Query Frame = 1 

Query: 65  NVVEILEERGLLESITSDNLRSACLSPLKVYCGFDPTAESLHLGNLLGLIVLSWFRRCGH 124
           N VE L  RG++  +            +  Y G DPTA+SLH+G+L G+++L  F+RCGH
Sbjct: 2   NFVEELRWRGMVHDMMPGTEELLAKEQVTAYVGIDPTADSLHIGHLCGVMILRHFQRCGH 61

Query: 125 TTVALIGGATARVGDPSGKSLERPELDLQTLETNTLGITNIITRILGNSGLDSNFSSDFV 184
             +ALIGGAT  +GDPSGKS ER  LD +TL  N   I   + + L     +S+  +   
Sbjct: 62  KPLALIGGATGMIGDPSGKSAERNLLDEETLRHNQACIKKQLAKFLD---FESDAPNRAE 121

Query: 185 ILNNYDWWKEFRFLDFLKEVGRFARVGTMMAKESVKRRL--ESDQGMSYTEFTYQLLQGY 244
           ++NNYDW KEF FLDF +EVG+   V  MMAKESVK+RL  E+  G+S+TEFTYQLLQGY
Sbjct: 122 LVNNYDWMKEFTFLDFAREVGKHITVNYMMAKESVKKRLNGEARDGLSFTEFTYQLLQGY 181

Query: 245 DFLYLYQNQGVSVQIGGSDQWGNITAGTELIRKILPQADGVYGLTFPLLLKSDGTKFGKS 304
           DFL+LY+ +G  +Q+GGSDQWGNIT GTELIR+        Y LT PL+ K+DG KFGK+
Sbjct: 182 DFLHLYETKGCKLQMGGSDQWGNITTGTELIRR--TNGGEAYALTCPLITKADGGKFGKT 241

Query: 305 VDGAIWLSPSKLSPYKFYQYFFSVPDADVIRFLRILTFLDIEEIRDLESQMASPGYVPNT 364
             G IWL P   SPYKFYQ++ +V DAD  R+++I T LD  EI  L ++     ++   
Sbjct: 242 ESGNIWLDPRYTSPYKFYQFWLNVSDADAERYIKIFTSLDKAEIDGLVAEHNEAPHL-RV 301

Query: 365 AQRRLAEEVTRFVHGEDGLNEALEATEALKPGAET----KLDWKTIVGIGEDVPCCSLEY 424
            Q+RLA+EVT  VH E+  N A++A+  L   A +    KLD  T++ + E VP   +  
Sbjct: 302 LQKRLAKEVTVMVHSEEDYNAAVDASNILFGNATSDALKKLDEDTLLAVFEGVPQFEISR 361

Query: 425 DQVL-NLSVVDLAV-MSGLLESKSAARRLLKQGGLYLNNSRVDSESKKIEAIDIIDGKVL 484
           D ++  +  VDL V  + +  SK   R+L++ GG+ LN  ++ +  + I   D++D K L
Sbjct: 362 DALVEGVKAVDLFVDNAAVFASKGEMRKLVQGGGVSLNKEKLAAFDQVITTADLLDEKYL 421

Query: 485 LLSAGKKNKMVV 489
           L+  GKKN  ++
Sbjct: 422 LVQRGKKNYYLI 427

[Close]
BLAST of CmoCh04G003940 vs. TrEMBL
Match: A0A0A0KU70_CUCSA (Tyrosine--tRNA ligase OS=Cucumis sativus GN=Csa_4G025150 PE=3 SV=1)

HSP 1 Score: 799.3 bits (2063), Expect = 2.7e-228
Identity = 412/488 (84.43%), Postives = 445/488 (91.19%), Query Frame = 1 

Query: 4   AASARSSMTFLLSQRTLFFSNSIISSKPSLSFSLKSTFSCLASSASSLQSSTLEPQTASR 63
           ++S  +S  FLLSQR+ FFS   ISSKPS SF  K T    +SS+ +  S    P  +  
Sbjct: 10  SSSCYTSKAFLLSQRSFFFST--ISSKPSSSFFFKPTSRFFSSSSPT--SLHYSPTPSPP 69

Query: 64  RNVVEILEERGLLESITSDNLRSACLSPLKVYCGFDPTAESLHLGNLLGLIVLSWFRRCG 123
            NV++ILE+RGLL+SITSDNLRSA LSPLKVYCGFDPTA+SLHLGNLLGLIVLSWFRRCG
Sbjct: 70  TNVIQILEQRGLLDSITSDNLRSASLSPLKVYCGFDPTAQSLHLGNLLGLIVLSWFRRCG 129

Query: 124 HTTVALIGGATARVGDPSGKSLERPELDLQTLETNTLGITNIITRILGNSGLDSNFSSDF 183
           H+TVALIGGATARVGDPSGKSLERPELDLQTLE NTLGITNIIT+ILGNSG DS+F  +F
Sbjct: 130 HSTVALIGGATARVGDPSGKSLERPELDLQTLEANTLGITNIITKILGNSGSDSDFCPNF 189

Query: 184 VILNNYDWWKEFRFLDFLKEVGRFARVGTMMAKESVKRRLESDQGMSYTEFTYQLLQGYD 243
           VILNNYDWWKEFRFLDFLK+VGRFARVG+M+AKESV+RRLES+QGMSYTEFTYQLLQGYD
Sbjct: 190 VILNNYDWWKEFRFLDFLKDVGRFARVGSMIAKESVRRRLESEQGMSYTEFTYQLLQGYD 249

Query: 244 FLYLYQNQGVSVQIGGSDQWGNITAGTELIRKILPQADGVYGLTFPLLLKSDGTKFGKSV 303
           FL+LYQN+GVSVQIGGSDQWGNITAGTELIRK LPQADGVYGLTFPLLLKSDGTKFGKS 
Sbjct: 250 FLHLYQNEGVSVQIGGSDQWGNITAGTELIRKRLPQADGVYGLTFPLLLKSDGTKFGKSE 309

Query: 304 DGAIWLSPSKLSPYKFYQYFFSVPDADVIRFLRILTFLDIEEIRDLESQMASPGYVPNTA 363
           DGAIWLSPS LSPYKFYQYFFSVPDADV+RFLRILTFLDIEEI+DLESQM  PGYVPNTA
Sbjct: 310 DGAIWLSPSMLSPYKFYQYFFSVPDADVVRFLRILTFLDIEEIQDLESQMMKPGYVPNTA 369

Query: 364 QRRLAEEVTRFVHGEDGLNEALEATEALKPGAETKLDWKTIVGIGEDVPCCSLEYDQVLN 423
           QRRLAEEVTRFVHGEDGL EAL+ATEALKPGAETKLDWKTI GI EDVPCCSLEYDQVLN
Sbjct: 370 QRRLAEEVTRFVHGEDGLREALKATEALKPGAETKLDWKTIEGIAEDVPCCSLEYDQVLN 429

Query: 424 LSVVDLAVMSGLLESKSAARRLLKQGGLYLNNSRVDSESKKIEAIDIIDGKVLLLSAGKK 483
           LSVVDL+V SGLLESKSAARRLLKQGGLYLNN RVDSESK++EA+DI+DGKVLLLSAGKK
Sbjct: 430 LSVVDLSVTSGLLESKSAARRLLKQGGLYLNNGRVDSESKRVEAVDIVDGKVLLLSAGKK 489

Query: 484 NKMVVRIS 492
           NK+VVRIS
Sbjct: 490 NKVVVRIS 493

[Close]
BLAST of CmoCh04G003940 vs. TrEMBL
Match: A0A059APG6_EUCGR (Tyrosine--tRNA ligase (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_I01565 PE=3 SV=1)

HSP 1 Score: 701.8 bits (1810), Expect = 5.8e-199
Identity = 360/464 (77.59%), Postives = 403/464 (86.85%), Query Frame = 1 

Query: 42  SCLASSASSLQSSTLEPQ-----TASRR---NVVEILEERGLLESITSDNLRSACLSP-- 101
           S L S++ S  S+TL PQ     ++ RR   NVV++LEERGLLES+TS+NLRSAC S   
Sbjct: 17  SPLNSASRSAHSTTLSPQPPPSSSSGRRPRPNVVDVLEERGLLESVTSENLRSACSSGSG 76

Query: 102 LKVYCGFDPTAESLHLGNLLGLIVLSWFRRCGHTTVALIGGATARVGDPSGKSLERPELD 161
           L+VYCGFDPTAESLHLGNLLG+IVLSWFRRCGH TVAL+GGATARVGDPSGKSLERPELD
Sbjct: 77  LRVYCGFDPTAESLHLGNLLGIIVLSWFRRCGHRTVALLGGATARVGDPSGKSLERPELD 136

Query: 162 LQTLETNTLGITNIITRILGNSGL----DSNFSSDFVILNNYDWWKEFRFLDFLKEVGRF 221
           L+TLE NT GI   +TRILG  G     D +    FVILNNYDWWK+ + LDFLK VGR+
Sbjct: 137 LETLERNTAGIAATVTRILGKGGDGDDDDDDGDGSFVILNNYDWWKDVKLLDFLKRVGRY 196

Query: 222 ARVGTMMAKESVKRRLESDQGMSYTEFTYQLLQGYDFLYLYQNQGVSVQIGGSDQWGNIT 281
           ARVGTM+AKESVK+RLES+QGMSYTEFTYQLLQGYDFL+L+QN+GV+VQIGGSDQWGNIT
Sbjct: 197 ARVGTMVAKESVKKRLESEQGMSYTEFTYQLLQGYDFLHLFQNEGVNVQIGGSDQWGNIT 256

Query: 282 AGTELIRKILPQADGVYGLTFPLLLKSDGTKFGKSVDGAIWLSPSKLSPYKFYQYFFSVP 341
           AGTELIRKIL Q +G YGLTFPLLLKSDGTKFGKS DGAIWLSPS LSPYKFYQYFFSVP
Sbjct: 257 AGTELIRKIL-QLEGAYGLTFPLLLKSDGTKFGKSEDGAIWLSPSMLSPYKFYQYFFSVP 316

Query: 342 DADVIRFLRILTFLDIEEIRDLESQMASPGYVPNTAQRRLAEEVTRFVHGEDGLNEALEA 401
           D D+IRFL++LTFL+IEEI ++E  M  PGYVPNTAQRRLAEEVTRFVHGEDGL EAL+A
Sbjct: 317 DTDIIRFLKVLTFLEIEEINEIEKDMKRPGYVPNTAQRRLAEEVTRFVHGEDGLQEALKA 376

Query: 402 TEALKPGAETKLDWKTIVGIGEDVPCCSLEYDQVLNLSVVDLAVMSGLLESKSAARRLLK 461
           TEAL+PGAETKLDWKTI GI EDVP CSL YD VLN S+VDL+V++GL+ESKSAARRLLK
Sbjct: 377 TEALRPGAETKLDWKTIEGIAEDVPSCSLNYDDVLNCSLVDLSVLAGLMESKSAARRLLK 436

Query: 462 QGGLYLNNSRVDSESKKIEAIDIIDGKVLLLSAGKKNKMVVRIS 492
           QGG+YLNN RVD ESK+IEA DI+DGKVLLLSAGKKNK+VVRIS
Sbjct: 437 QGGMYLNNGRVDGESKRIEAEDIVDGKVLLLSAGKKNKVVVRIS 479

[Close]
BLAST of CmoCh04G003940 vs. TrEMBL
Match: K7M864_SOYBN (Tyrosine--tRNA ligase OS=Glycine max GN=GLYMA_14G202100 PE=3 SV=1)

HSP 1 Score: 696.8 bits (1797), Expect = 1.9e-197
Identity = 362/455 (79.56%), Postives = 398/455 (87.47%), Query Frame = 1 

Query: 46  SSASSLQSSTLEPQ-TASRRNVVEILEERGLLESITSDNLRSACLSP--LKVYCGFDPTA 105
           ++ S+LQ    +P+   S  NV+ ILEERGL+ESITSD LRSACL+P  LKVYCGFDPTA
Sbjct: 39  TTCSTLQQQQQQPRRNNSNNNVIGILEERGLVESITSDALRSACLTPPPLKVYCGFDPTA 98

Query: 106 ESLHLGNLLGLIVLSWFRRCGHTTVALIGGATARVGDPSGKSLERPELDLQTLETNTLGI 165
           ESLHLGNLLGLIVLSWFRRCGH  VALIGGATARVGDPSGKSLERPELD +TLE N +GI
Sbjct: 99  ESLHLGNLLGLIVLSWFRRCGHRAVALIGGATARVGDPSGKSLERPELDAETLERNQMGI 158

Query: 166 TNIITRILGNS------GLDSNFSSDFVILNNYDWWKEFRFLDFLKEVGRFARVGTMMAK 225
           +N I  ILG +      G DS+  S  VILNNY+WWKEF  LDFLK VGRFARVG+MMAK
Sbjct: 159 SNTIHEILGRAQNSNLVGPDSD--SSVVILNNYNWWKEFSLLDFLKRVGRFARVGSMMAK 218

Query: 226 ESVKRRLESDQGMSYTEFTYQLLQGYDFLYLYQNQGVSVQIGGSDQWGNITAGTELIRKI 285
           ESV++RLES+QGMSYTEFTYQLLQGYDFL+L+QN+GVSVQIGGSDQWGNITAGTELIRKI
Sbjct: 219 ESVRKRLESEQGMSYTEFTYQLLQGYDFLHLFQNEGVSVQIGGSDQWGNITAGTELIRKI 278

Query: 286 LPQADGVYGLTFPLLLKSDGTKFGKSVDGAIWLSPSKLSPYKFYQYFFSVPDADVIRFLR 345
           L Q +G YGLTFPLLLKSDGTKFGKS DGAIWLSP+ LSPYKFYQYFFSVPD DVIRFL+
Sbjct: 279 L-QVEGAYGLTFPLLLKSDGTKFGKSEDGAIWLSPTFLSPYKFYQYFFSVPDDDVIRFLK 338

Query: 346 ILTFLDIEEIRDLESQMASPGYVPNTAQRRLAEEVTRFVHGEDGLNEALEATEALKPGAE 405
           ILTFLDIEEI  LE +M  PGYVPNTAQRRLAEEVTRFVHGEDGL EAL+ATEAL+PG+E
Sbjct: 339 ILTFLDIEEIVSLEGEMGKPGYVPNTAQRRLAEEVTRFVHGEDGLAEALKATEALRPGSE 398

Query: 406 TKLDWKTIVGIGEDVPCCSLEYDQVLNLSVVDLAVMSGLLESKSAARRLLKQGGLYLNNS 465
           TKLDWKTI GI EDVP CSL YD VLNLS+VDL+V SGL ESKSAARRLLKQGGLYLNN+
Sbjct: 399 TKLDWKTIEGIAEDVPSCSLAYDAVLNLSLVDLSVSSGLFESKSAARRLLKQGGLYLNNN 458

Query: 466 RVDSESKKIEAIDIIDGKVLLLSAGKKNKMVVRIS 492
           RVDSESK+IEA DI+DGKVLLLSAGKKNK++VRI+
Sbjct: 459 RVDSESKRIEAADIVDGKVLLLSAGKKNKVLVRIA 490

[Close]
BLAST of CmoCh04G003940 vs. TrEMBL
Match: A0A061FA14_THECC (Tyrosine--tRNA ligase OS=Theobroma cacao GN=TCM_032159 PE=3 SV=1)

HSP 1 Score: 693.7 bits (1789), Expect = 1.6e-196
Identity = 360/469 (76.76%), Postives = 410/469 (87.42%), Query Frame = 1 

Query: 31  PSLSFSLKS-TFSCLASSASSLQSSTLEP--QTASRRNVVEILEERGLLESITSDNLRSA 90
           PS    LK+ +FS ++ S ++ Q  TLEP  Q  S  NV++ILEERGLLES+T++NLR A
Sbjct: 25  PSSKRPLKNLSFSSISCSLNTPQP-TLEPKSQLGSPPNVIKILEERGLLESVTNENLRLA 84

Query: 91  C----LSPLKVYCGFDPTAESLHLGNLLGLIVLSWFRRCGHTTVALIGGATARVGDPSGK 150
           C      PLKVYCGFDPTAESLHLGNLLGLIVLSWF+RCGH  VALIGGAT R+GDPSGK
Sbjct: 85  CSDQTAGPLKVYCGFDPTAESLHLGNLLGLIVLSWFQRCGHKAVALIGGATGRIGDPSGK 144

Query: 151 SLERPELDLQTLETNTLGITNIITRILG-NSGLDSNFSSDFVILNNYDWWKEFRFLDFLK 210
           S ERPELDL++LE N +GI + I +IL  N+ L S  +S+FVILNNYDWWKE R LDFLK
Sbjct: 145 SQERPELDLKSLEKNIVGIMDTINKILSKNANLGSQENSNFVILNNYDWWKEVRLLDFLK 204

Query: 211 EVGRFARVGTMMAKESVKRRLESDQGMSYTEFTYQLLQGYDFLYLYQNQGVSVQIGGSDQ 270
           +VGR+ARVG+MM+KESVK+RLES+QGMSYTEFTYQLLQGYDFLYL++N+ VSVQIGGSDQ
Sbjct: 205 QVGRYARVGSMMSKESVKKRLESEQGMSYTEFTYQLLQGYDFLYLFKNESVSVQIGGSDQ 264

Query: 271 WGNITAGTELIRKILPQADGVYGLTFPLLLKSDGTKFGKSVDGAIWLSPSKLSPYKFYQY 330
           WGNITAGTELIRKIL QA+G YGLTFPLLLKSDGTKFGKS DGAIWLSPS LSPYKFYQY
Sbjct: 265 WGNITAGTELIRKIL-QAEGAYGLTFPLLLKSDGTKFGKSEDGAIWLSPSMLSPYKFYQY 324

Query: 331 FFSVPDADVIRFLRILTFLDIEEIRDLESQMASPGYVPNTAQRRLAEEVTRFVHGEDGLN 390
           FFSVPDADV+RFL+ILTFL +EEI +LES M  PGYVPNTAQ+RLAEE+TRFVHGEDGLN
Sbjct: 325 FFSVPDADVVRFLKILTFLSMEEINELESGMTRPGYVPNTAQQRLAEEITRFVHGEDGLN 384

Query: 391 EALEATEALKPGAETKLDWKTIVGIGEDVPCCSLEYDQVLNLSVVDLAVMSGLLESKSAA 450
           EAL+ATEAL+PG+ETKLDWKTI GI EDVP C+L Y+QV+NLS+VDL+V SGL ESKSAA
Sbjct: 385 EALKATEALRPGSETKLDWKTIEGIAEDVPSCTLPYNQVVNLSIVDLSVCSGLFESKSAA 444

Query: 451 RRLLKQGGLYLNNSRVDSESKKIEAIDIIDGKVLLLSAGKKNKMVVRIS 492
           RRLLKQGGLYLNN+RVD+E K+IEA DI+DGKVLLLSAGKKNK+VVRIS
Sbjct: 445 RRLLKQGGLYLNNNRVDNEIKRIEAEDIVDGKVLLLSAGKKNKVVVRIS 491

[Close]
BLAST of CmoCh04G003940 vs. TrEMBL
Match: F6H622_VITVI (Tyrosine--tRNA ligase OS=Vitis vinifera GN=VIT_14s0036g00480 PE=3 SV=1)

HSP 1 Score: 691.4 bits (1783), Expect = 7.8e-196
Identity = 368/493 (74.65%), Postives = 416/493 (84.38%), Query Frame = 1 

Query: 1   MAMAASARSSMTFLLSQRTLFFSNSIISSKPSLS-FSLKSTFSCLASSASSLQSSTLEPQ 60
           MAMAA+   S  FL   + LF S +I SSK   + FS     S +   A S  S T  P 
Sbjct: 1   MAMAAA---STAFLSCNQKLFLSTNIASSKTIAALFSRNRPLSSIIRCAHS-SSQTKIP- 60

Query: 61  TASRRNVVEILEERGLLESITSDNLR-SACLSPLKVYCGFDPTAESLHLGNLLGLIVLSW 120
              R NV+EILE+RGL++SITS  LR S+    LKVYCGFDPTAESLHLGNLLGLIVLSW
Sbjct: 61  -LHRSNVIEILEQRGLVDSITSPILRASSSTQTLKVYCGFDPTAESLHLGNLLGLIVLSW 120

Query: 121 FRRCGHTTVALIGGATARVGDPSGKSLERPELDLQTLETNTLGITNIITRILGNSGLDSN 180
           FRRCGH  VALIGGATAR+GDPSGKSLERPEL+L+ LE NT+GITN IT IL  S  +  
Sbjct: 121 FRRCGHKAVALIGGATARIGDPSGKSLERPELNLEALEKNTIGITNTITSILNRSTTNGG 180

Query: 181 FSSDFVILNNYDWWKEFRFLDFLKEVGRFARVGTMMAKESVKRRLESDQGMSYTEFTYQL 240
             S FV+LNNYDWWKEF  LDFLK+VGR+ARVGTMMAKESVK+RLES+QGMSYTEFTYQL
Sbjct: 181 DDS-FVVLNNYDWWKEFTLLDFLKKVGRYARVGTMMAKESVKKRLESEQGMSYTEFTYQL 240

Query: 241 LQGYDFLYLYQNQGVSVQIGGSDQWGNITAGTELIRKILPQADGVYGLTFPLLLKSDGTK 300
           LQGYDFLYL++N+GVSVQ GGSDQWGNITAGTELIRKIL Q DG YGLTFPLLLKSDGTK
Sbjct: 241 LQGYDFLYLFENEGVSVQFGGSDQWGNITAGTELIRKIL-QTDGAYGLTFPLLLKSDGTK 300

Query: 301 FGKSVDGAIWLSPSKLSPYKFYQYFFSVPDADVIRFLRILTFLDIEEIRDLESQMASPGY 360
           FGKS DGAIWLSP+ LSPYKFYQYFFSVPDADV+RFL+ILTFLD++EI +LE +M SP Y
Sbjct: 301 FGKSEDGAIWLSPAMLSPYKFYQYFFSVPDADVVRFLKILTFLDMDEIMELEVKMRSPSY 360

Query: 361 VPNTAQRRLAEEVTRFVHGEDGLNEALEATEALKPGAETKLDWKTIVGIGEDVPCCSLEY 420
           VPNTAQRRLAEE TRFVHG++GL+EAL+ATEAL+PGAETKLDWKTI GI +DVP CSL Y
Sbjct: 361 VPNTAQRRLAEEATRFVHGQEGLDEALKATEALRPGAETKLDWKTIEGIAKDVPSCSLSY 420

Query: 421 DQVLNLSVVDLAVMSGLLESKSAARRLLKQGGLYLNNSRVDSESKKIEAIDIIDGKVLLL 480
           D+VLNLS++DL++ +GLLESKSAARRLLKQGGLYLNN+R+DSE+K+IEA DI+DGKVLLL
Sbjct: 421 DEVLNLSLLDLSISTGLLESKSAARRLLKQGGLYLNNNRIDSEAKRIEAEDIVDGKVLLL 480

Query: 481 SAGKKNKMVVRIS 492
           SAGKKNK+VVRIS
Sbjct: 481 SAGKKNKVVVRIS 485

[Close]
BLAST of CmoCh04G003940 vs. TAIR10
Match: AT3G02660.1 (AT3G02660.1 Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial)

HSP 1 Score: 649.4 bits (1674), Expect = 1.7e-186
Identity = 328/462 (71.00%), Postives = 381/462 (82.47%), Query Frame = 1 

Query: 34  SFSLKSTFSCLASSASSLQSSTLEPQTASRRNVVEILEERGLLESITSDNLRSAC----L 93
           S S  + FS +  S  S  S   E Q   R NVV+ILEERGLLESITS+NLRSAC    +
Sbjct: 53  STSTTTLFSSVKCSIHSTSSPETENQAVFRPNVVDILEERGLLESITSENLRSACSDPKV 112

Query: 94  SPLKVYCGFDPTAESLHLGNLLGLIVLSWFRRCGHTTVALIGGATARVGDPSGKSLERPE 153
           +PL+VYCGFDPTAESLHLGNLLG+IVLSWF+RCGH  V LIGGAT RVGDPSGKSLERPE
Sbjct: 113 APLRVYCGFDPTAESLHLGNLLGIIVLSWFQRCGHQAVGLIGGATGRVGDPSGKSLERPE 172

Query: 154 LDLQTLETNTLGITNIITRILGNSGLDSNFSSDFVILNNYDWWKEFRFLDFLKEVGRFAR 213
           LD  TLE N  GIT II +ILG++    +    +VI NNYDWWK+   LDFL +VGRFAR
Sbjct: 173 LDADTLEKNIAGITKIIIKILGSN---PSPGGSYVIFNNYDWWKDMTMLDFLNKVGRFAR 232

Query: 214 VGTMMAKESVKRRLESDQGMSYTEFTYQLLQGYDFLYLYQNQGVSVQIGGSDQWGNITAG 273
           VGTMMAKESVK+RLES+QGMSYTEFTYQLLQ YDFL+L++N+G++VQIGGSDQWGNITAG
Sbjct: 233 VGTMMAKESVKKRLESEQGMSYTEFTYQLLQAYDFLHLFKNEGINVQIGGSDQWGNITAG 292

Query: 274 TELIRKILPQADGVYGLTFPLLLKSDGTKFGKSVDGAIWLSPSKLSPYKFYQYFFSVPDA 333
           T+LIRKIL   +  YGLTFPLLLK+DGTKFGKS DGAIWLSPS LSPYKFYQYFFSVPD 
Sbjct: 293 TDLIRKILQAEEAAYGLTFPLLLKNDGTKFGKSEDGAIWLSPSMLSPYKFYQYFFSVPDV 352

Query: 334 DVIRFLRILTFLDIEEIRDLESQMASPGYVPNTAQRRLAEEVTRFVHGEDGLNEALEATE 393
           DVIRFL+ LTFL ++EI+ LE QM+ PGYVPNTAQ +LAEEVTRFVHGE+GL EA++ATE
Sbjct: 353 DVIRFLKTLTFLSLDEIKILEDQMSKPGYVPNTAQIKLAEEVTRFVHGEEGLKEAIKATE 412

Query: 394 ALKPGAETKLDWKTIVGIGEDVPCCSLEYDQVLNLSVVDLAVMSGLLESKSAARRLLKQG 453
           AL+PGAETKLDW  I  I ED+P CSL  D+V  LS+VDL+V +GL ESKSAARR+LKQG
Sbjct: 413 ALRPGAETKLDWNLIERIAEDIPSCSLPIDRVSGLSIVDLSVSAGLFESKSAARRMLKQG 472

Query: 454 GLYLNNSRVDSESKKIEAIDIIDGKVLLLSAGKKNKMVVRIS 492
           G Y+NN RVD E+K+++  DI++G+ L+LSAGKKNK+VVRIS
Sbjct: 473 GFYMNNERVDDENKRVDEEDIVEGRGLVLSAGKKNKVVVRIS 511

[Close]
BLAST of CmoCh04G003940 vs. NCBI nr
Match: gi|449458313|ref|XP_004146892.1| (PREDICTED: probable tyrosine--tRNA ligase, mitochondrial [Cucumis sativus])

HSP 1 Score: 799.3 bits (2063), Expect = 3.8e-228
Identity = 412/488 (84.43%), Postives = 445/488 (91.19%), Query Frame = 1 

Query: 4   AASARSSMTFLLSQRTLFFSNSIISSKPSLSFSLKSTFSCLASSASSLQSSTLEPQTASR 63
           ++S  +S  FLLSQR+ FFS   ISSKPS SF  K T    +SS+ +  S    P  +  
Sbjct: 10  SSSCYTSKAFLLSQRSFFFST--ISSKPSSSFFFKPTSRFFSSSSPT--SLHYSPTPSPP 69

Query: 64  RNVVEILEERGLLESITSDNLRSACLSPLKVYCGFDPTAESLHLGNLLGLIVLSWFRRCG 123
            NV++ILE+RGLL+SITSDNLRSA LSPLKVYCGFDPTA+SLHLGNLLGLIVLSWFRRCG
Sbjct: 70  TNVIQILEQRGLLDSITSDNLRSASLSPLKVYCGFDPTAQSLHLGNLLGLIVLSWFRRCG 129

Query: 124 HTTVALIGGATARVGDPSGKSLERPELDLQTLETNTLGITNIITRILGNSGLDSNFSSDF 183
           H+TVALIGGATARVGDPSGKSLERPELDLQTLE NTLGITNIIT+ILGNSG DS+F  +F
Sbjct: 130 HSTVALIGGATARVGDPSGKSLERPELDLQTLEANTLGITNIITKILGNSGSDSDFCPNF 189

Query: 184 VILNNYDWWKEFRFLDFLKEVGRFARVGTMMAKESVKRRLESDQGMSYTEFTYQLLQGYD 243
           VILNNYDWWKEFRFLDFLK+VGRFARVG+M+AKESV+RRLES+QGMSYTEFTYQLLQGYD
Sbjct: 190 VILNNYDWWKEFRFLDFLKDVGRFARVGSMIAKESVRRRLESEQGMSYTEFTYQLLQGYD 249

Query: 244 FLYLYQNQGVSVQIGGSDQWGNITAGTELIRKILPQADGVYGLTFPLLLKSDGTKFGKSV 303
           FL+LYQN+GVSVQIGGSDQWGNITAGTELIRK LPQADGVYGLTFPLLLKSDGTKFGKS 
Sbjct: 250 FLHLYQNEGVSVQIGGSDQWGNITAGTELIRKRLPQADGVYGLTFPLLLKSDGTKFGKSE 309

Query: 304 DGAIWLSPSKLSPYKFYQYFFSVPDADVIRFLRILTFLDIEEIRDLESQMASPGYVPNTA 363
           DGAIWLSPS LSPYKFYQYFFSVPDADV+RFLRILTFLDIEEI+DLESQM  PGYVPNTA
Sbjct: 310 DGAIWLSPSMLSPYKFYQYFFSVPDADVVRFLRILTFLDIEEIQDLESQMMKPGYVPNTA 369

Query: 364 QRRLAEEVTRFVHGEDGLNEALEATEALKPGAETKLDWKTIVGIGEDVPCCSLEYDQVLN 423
           QRRLAEEVTRFVHGEDGL EAL+ATEALKPGAETKLDWKTI GI EDVPCCSLEYDQVLN
Sbjct: 370 QRRLAEEVTRFVHGEDGLREALKATEALKPGAETKLDWKTIEGIAEDVPCCSLEYDQVLN 429

Query: 424 LSVVDLAVMSGLLESKSAARRLLKQGGLYLNNSRVDSESKKIEAIDIIDGKVLLLSAGKK 483
           LSVVDL+V SGLLESKSAARRLLKQGGLYLNN RVDSESK++EA+DI+DGKVLLLSAGKK
Sbjct: 430 LSVVDLSVTSGLLESKSAARRLLKQGGLYLNNGRVDSESKRVEAVDIVDGKVLLLSAGKK 489

Query: 484 NKMVVRIS 492
           NK+VVRIS
Sbjct: 490 NKVVVRIS 493

[Close]
BLAST of CmoCh04G003940 vs. NCBI nr
Match: gi|659107761|ref|XP_008453844.1| (PREDICTED: probable tyrosine--tRNA ligase, mitochondrial [Cucumis melo])

HSP 1 Score: 796.6 bits (2056), Expect = 2.5e-227
Identity = 409/486 (84.16%), Postives = 444/486 (91.36%), Query Frame = 1 

Query: 6   SARSSMTFLLSQRTLFFSNSIISSKPSLSFSLKSTFSCLASSASSLQSSTLEPQTASRRN 65
           S  +S  FLLSQR+ FFS   ISSKPS SF LK T    ASS+ +  S    P  +   N
Sbjct: 12  SCYTSKAFLLSQRSFFFST--ISSKPSSSFFLKPTSRFFASSSPT--SLRYSPTPSPPTN 71

Query: 66  VVEILEERGLLESITSDNLRSACLSPLKVYCGFDPTAESLHLGNLLGLIVLSWFRRCGHT 125
           V++ILE+RGLL+SITSDNLRSA LSPLKVYCGFDPTA+SLHLGNLLGLIVLSWFRRCGH+
Sbjct: 72  VIQILEQRGLLDSITSDNLRSASLSPLKVYCGFDPTAQSLHLGNLLGLIVLSWFRRCGHS 131

Query: 126 TVALIGGATARVGDPSGKSLERPELDLQTLETNTLGITNIITRILGNSGLDSNFSSDFVI 185
           TVALIGGATAR+GDPSGKSLERPELDLQTLE NTLGITNIIT+ILGNSG DS+F  +F+I
Sbjct: 132 TVALIGGATARIGDPSGKSLERPELDLQTLEANTLGITNIITKILGNSGSDSDFCPNFLI 191

Query: 186 LNNYDWWKEFRFLDFLKEVGRFARVGTMMAKESVKRRLESDQGMSYTEFTYQLLQGYDFL 245
           LNNYDWWKEFRFLDFLK+VGRFARVG+M+AKESV+RRLES+QGMSYTEFTYQLLQGYDFL
Sbjct: 192 LNNYDWWKEFRFLDFLKDVGRFARVGSMIAKESVRRRLESEQGMSYTEFTYQLLQGYDFL 251

Query: 246 YLYQNQGVSVQIGGSDQWGNITAGTELIRKILPQADGVYGLTFPLLLKSDGTKFGKSVDG 305
           +LYQN+GVSVQIGGSDQWGNITAGTELIRK LPQADGVYGLTFPLLLKSDGTKFGKS DG
Sbjct: 252 HLYQNEGVSVQIGGSDQWGNITAGTELIRKRLPQADGVYGLTFPLLLKSDGTKFGKSEDG 311

Query: 306 AIWLSPSKLSPYKFYQYFFSVPDADVIRFLRILTFLDIEEIRDLESQMASPGYVPNTAQR 365
           AIWLSPS LSPYKFYQYFFSVPDADV+RFLRILTFLDIEEI+DLESQM  PGYVPNT QR
Sbjct: 312 AIWLSPSMLSPYKFYQYFFSVPDADVVRFLRILTFLDIEEIQDLESQMTKPGYVPNTVQR 371

Query: 366 RLAEEVTRFVHGEDGLNEALEATEALKPGAETKLDWKTIVGIGEDVPCCSLEYDQVLNLS 425
           RLAEEVTRFVHGE+GL+EAL+ATEALKPGAETKLDWKTI GI EDVPCCSLEYDQVLNLS
Sbjct: 372 RLAEEVTRFVHGENGLSEALKATEALKPGAETKLDWKTIEGIAEDVPCCSLEYDQVLNLS 431

Query: 426 VVDLAVMSGLLESKSAARRLLKQGGLYLNNSRVDSESKKIEAIDIIDGKVLLLSAGKKNK 485
           VVDL+V +GLLESKSAARRLLKQGGLYLNN RVDSESK++EA+D+IDGKVLLLSAGKKNK
Sbjct: 432 VVDLSVTTGLLESKSAARRLLKQGGLYLNNGRVDSESKRVEAVDVIDGKVLLLSAGKKNK 491

Query: 486 MVVRIS 492
           +VVRIS
Sbjct: 492 VVVRIS 493

[Close]
BLAST of CmoCh04G003940 vs. NCBI nr
Match: gi|629089480|gb|KCW55733.1| (hypothetical protein EUGRSUZ_I01565, partial [Eucalyptus grandis])

HSP 1 Score: 701.8 bits (1810), Expect = 8.3e-199
Identity = 360/464 (77.59%), Postives = 403/464 (86.85%), Query Frame = 1 

Query: 42  SCLASSASSLQSSTLEPQ-----TASRR---NVVEILEERGLLESITSDNLRSACLSP-- 101
           S L S++ S  S+TL PQ     ++ RR   NVV++LEERGLLES+TS+NLRSAC S   
Sbjct: 17  SPLNSASRSAHSTTLSPQPPPSSSSGRRPRPNVVDVLEERGLLESVTSENLRSACSSGSG 76

Query: 102 LKVYCGFDPTAESLHLGNLLGLIVLSWFRRCGHTTVALIGGATARVGDPSGKSLERPELD 161
           L+VYCGFDPTAESLHLGNLLG+IVLSWFRRCGH TVAL+GGATARVGDPSGKSLERPELD
Sbjct: 77  LRVYCGFDPTAESLHLGNLLGIIVLSWFRRCGHRTVALLGGATARVGDPSGKSLERPELD 136

Query: 162 LQTLETNTLGITNIITRILGNSGL----DSNFSSDFVILNNYDWWKEFRFLDFLKEVGRF 221
           L+TLE NT GI   +TRILG  G     D +    FVILNNYDWWK+ + LDFLK VGR+
Sbjct: 137 LETLERNTAGIAATVTRILGKGGDGDDDDDDGDGSFVILNNYDWWKDVKLLDFLKRVGRY 196

Query: 222 ARVGTMMAKESVKRRLESDQGMSYTEFTYQLLQGYDFLYLYQNQGVSVQIGGSDQWGNIT 281
           ARVGTM+AKESVK+RLES+QGMSYTEFTYQLLQGYDFL+L+QN+GV+VQIGGSDQWGNIT
Sbjct: 197 ARVGTMVAKESVKKRLESEQGMSYTEFTYQLLQGYDFLHLFQNEGVNVQIGGSDQWGNIT 256

Query: 282 AGTELIRKILPQADGVYGLTFPLLLKSDGTKFGKSVDGAIWLSPSKLSPYKFYQYFFSVP 341
           AGTELIRKIL Q +G YGLTFPLLLKSDGTKFGKS DGAIWLSPS LSPYKFYQYFFSVP
Sbjct: 257 AGTELIRKIL-QLEGAYGLTFPLLLKSDGTKFGKSEDGAIWLSPSMLSPYKFYQYFFSVP 316

Query: 342 DADVIRFLRILTFLDIEEIRDLESQMASPGYVPNTAQRRLAEEVTRFVHGEDGLNEALEA 401
           D D+IRFL++LTFL+IEEI ++E  M  PGYVPNTAQRRLAEEVTRFVHGEDGL EAL+A
Sbjct: 317 DTDIIRFLKVLTFLEIEEINEIEKDMKRPGYVPNTAQRRLAEEVTRFVHGEDGLQEALKA 376

Query: 402 TEALKPGAETKLDWKTIVGIGEDVPCCSLEYDQVLNLSVVDLAVMSGLLESKSAARRLLK 461
           TEAL+PGAETKLDWKTI GI EDVP CSL YD VLN S+VDL+V++GL+ESKSAARRLLK
Sbjct: 377 TEALRPGAETKLDWKTIEGIAEDVPSCSLNYDDVLNCSLVDLSVLAGLMESKSAARRLLK 436

Query: 462 QGGLYLNNSRVDSESKKIEAIDIIDGKVLLLSAGKKNKMVVRIS 492
           QGG+YLNN RVD ESK+IEA DI+DGKVLLLSAGKKNK+VVRIS
Sbjct: 437 QGGMYLNNGRVDGESKRIEAEDIVDGKVLLLSAGKKNKVVVRIS 479

[Close]
BLAST of CmoCh04G003940 vs. NCBI nr
Match: gi|356551940|ref|XP_003544330.1| (PREDICTED: tyrosine--tRNA ligase, chloroplastic/mitochondrial-like [Glycine max])

HSP 1 Score: 696.8 bits (1797), Expect = 2.7e-197
Identity = 362/455 (79.56%), Postives = 398/455 (87.47%), Query Frame = 1 

Query: 46  SSASSLQSSTLEPQ-TASRRNVVEILEERGLLESITSDNLRSACLSP--LKVYCGFDPTA 105
           ++ S+LQ    +P+   S  NV+ ILEERGL+ESITSD LRSACL+P  LKVYCGFDPTA
Sbjct: 39  TTCSTLQQQQQQPRRNNSNNNVIGILEERGLVESITSDALRSACLTPPPLKVYCGFDPTA 98

Query: 106 ESLHLGNLLGLIVLSWFRRCGHTTVALIGGATARVGDPSGKSLERPELDLQTLETNTLGI 165
           ESLHLGNLLGLIVLSWFRRCGH  VALIGGATARVGDPSGKSLERPELD +TLE N +GI
Sbjct: 99  ESLHLGNLLGLIVLSWFRRCGHRAVALIGGATARVGDPSGKSLERPELDAETLERNQMGI 158

Query: 166 TNIITRILGNS------GLDSNFSSDFVILNNYDWWKEFRFLDFLKEVGRFARVGTMMAK 225
           +N I  ILG +      G DS+  S  VILNNY+WWKEF  LDFLK VGRFARVG+MMAK
Sbjct: 159 SNTIHEILGRAQNSNLVGPDSD--SSVVILNNYNWWKEFSLLDFLKRVGRFARVGSMMAK 218

Query: 226 ESVKRRLESDQGMSYTEFTYQLLQGYDFLYLYQNQGVSVQIGGSDQWGNITAGTELIRKI 285
           ESV++RLES+QGMSYTEFTYQLLQGYDFL+L+QN+GVSVQIGGSDQWGNITAGTELIRKI
Sbjct: 219 ESVRKRLESEQGMSYTEFTYQLLQGYDFLHLFQNEGVSVQIGGSDQWGNITAGTELIRKI 278

Query: 286 LPQADGVYGLTFPLLLKSDGTKFGKSVDGAIWLSPSKLSPYKFYQYFFSVPDADVIRFLR 345
           L Q +G YGLTFPLLLKSDGTKFGKS DGAIWLSP+ LSPYKFYQYFFSVPD DVIRFL+
Sbjct: 279 L-QVEGAYGLTFPLLLKSDGTKFGKSEDGAIWLSPTFLSPYKFYQYFFSVPDDDVIRFLK 338

Query: 346 ILTFLDIEEIRDLESQMASPGYVPNTAQRRLAEEVTRFVHGEDGLNEALEATEALKPGAE 405
           ILTFLDIEEI  LE +M  PGYVPNTAQRRLAEEVTRFVHGEDGL EAL+ATEAL+PG+E
Sbjct: 339 ILTFLDIEEIVSLEGEMGKPGYVPNTAQRRLAEEVTRFVHGEDGLAEALKATEALRPGSE 398

Query: 406 TKLDWKTIVGIGEDVPCCSLEYDQVLNLSVVDLAVMSGLLESKSAARRLLKQGGLYLNNS 465
           TKLDWKTI GI EDVP CSL YD VLNLS+VDL+V SGL ESKSAARRLLKQGGLYLNN+
Sbjct: 399 TKLDWKTIEGIAEDVPSCSLAYDAVLNLSLVDLSVSSGLFESKSAARRLLKQGGLYLNNN 458

Query: 466 RVDSESKKIEAIDIIDGKVLLLSAGKKNKMVVRIS 492
           RVDSESK+IEA DI+DGKVLLLSAGKKNK++VRI+
Sbjct: 459 RVDSESKRIEAADIVDGKVLLLSAGKKNKVLVRIA 490

[Close]
BLAST of CmoCh04G003940 vs. NCBI nr
Match: gi|702464441|ref|XP_010028900.1| (PREDICTED: probable tyrosine--tRNA ligase, mitochondrial [Eucalyptus grandis])

HSP 1 Score: 696.4 bits (1796), Expect = 3.5e-197
Identity = 371/507 (73.18%), Postives = 421/507 (83.04%), Query Frame = 1 

Query: 2   AMAASARSSMTFLLSQRTLFFSNSIISSKPSLSF-SLKSTF--SCLASSASSLQSSTLEP 61
           A  A+A +   F  +  +L    S +  +PS  F +L  T   S L S++ S  S+TL P
Sbjct: 5   AATAAAATCRLFSFNPASL----SPLRRRPSFLFPALAPTLLPSPLNSASRSAHSTTLSP 64

Query: 62  Q-----TASRR---NVVEILEERGLLESITSDNLRSACLSP--LKVYCGFDPTAESLHLG 121
           Q     ++ RR   NVV++LEERGLLES+TS+NLRSAC S   L+VYCGFDPTAESLHLG
Sbjct: 65  QPPPSSSSGRRPRPNVVDVLEERGLLESVTSENLRSACSSGSGLRVYCGFDPTAESLHLG 124

Query: 122 NLLGLIVLSWFRRCGHTTVALIGGATARVGDPSGKSLERPELDLQTLETNTLGITNIITR 181
           NLLG+IVLSWFRRCGH TVAL+GGATARVGDPSGKSLERPELDL+TLE NT GI   +TR
Sbjct: 125 NLLGIIVLSWFRRCGHRTVALLGGATARVGDPSGKSLERPELDLETLERNTAGIAATVTR 184

Query: 182 ILGNSGL----DSNFSSDFVILNNYDWWKEFRFLDFLKEVGRFARVGTMMAKESVKRRLE 241
           ILG  G     D +    FVILNNYDWWK+ + LDFLK VGR+ARVGTM+AKESVK+RLE
Sbjct: 185 ILGKGGDGDDDDDDGDGSFVILNNYDWWKDVKLLDFLKRVGRYARVGTMVAKESVKKRLE 244

Query: 242 SDQGMSYTEFTYQLLQGYDFLYLYQNQGVSVQIGGSDQWGNITAGTELIRKILPQADGVY 301
           S+QGMSYTEFTYQLLQGYDFL+L+QN+GV+VQIGGSDQWGNITAGTELIRKIL Q +G Y
Sbjct: 245 SEQGMSYTEFTYQLLQGYDFLHLFQNEGVNVQIGGSDQWGNITAGTELIRKIL-QLEGAY 304

Query: 302 GLTFPLLLKSDGTKFGKSVDGAIWLSPSKLSPYKFYQYFFSVPDADVIRFLRILTFLDIE 361
           GLTFPLLLKSDGTKFGKS DGAIWLSPS LSPYKFYQYFFSVPD D+IRFL++LTFL+IE
Sbjct: 305 GLTFPLLLKSDGTKFGKSEDGAIWLSPSMLSPYKFYQYFFSVPDTDIIRFLKVLTFLEIE 364

Query: 362 EIRDLESQMASPGYVPNTAQRRLAEEVTRFVHGEDGLNEALEATEALKPGAETKLDWKTI 421
           EI ++E  M  PGYVPNTAQRRLAEEVTRFVHGEDGL EAL+ATEAL+PGAETKLDWKTI
Sbjct: 365 EINEIEKDMKRPGYVPNTAQRRLAEEVTRFVHGEDGLQEALKATEALRPGAETKLDWKTI 424

Query: 422 VGIGEDVPCCSLEYDQVLNLSVVDLAVMSGLLESKSAARRLLKQGGLYLNNSRVDSESKK 481
            GI EDVP CSL YD VLN S+VDL+V++GL+ESKSAARRLLKQGG+YLNN RVD ESK+
Sbjct: 425 EGIAEDVPSCSLNYDDVLNCSLVDLSVLAGLMESKSAARRLLKQGGMYLNNGRVDGESKR 484

Query: 482 IEAIDIIDGKVLLLSAGKKNKMVVRIS 492
           IEA DI+DGKVLLLSAGKKNK+VVRIS
Sbjct: 485 IEAEDIVDGKVLLLSAGKKNKVVVRIS 506

The following BLAST results are available for this feature:
BLAST of CmoCh04G003940 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SYYM_ARATH3.1e-18571.00Tyrosine--tRNA ligase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=EM... [more]
SYY_PARUW5.7e-13152.93Tyrosine--tRNA ligase OS=Protochlamydia amoebophila (strain UWE25) GN=tyrS PE=3 ... [more]
SYY_ROSS12.3e-9243.46Tyrosine--tRNA ligase OS=Roseiflexus sp. (strain RS-1) GN=tyrS PE=3 SV=1[more]
SYY_BACTN4.0e-9244.39Tyrosine--tRNA ligase OS=Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2... [more]
SYY_BACFR5.2e-9244.44Tyrosine--tRNA ligase OS=Bacteroides fragilis (strain YCH46) GN=tyrS PE=3 SV=1[more]
BLAST of CmoCh04G003940 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KU70_CUCSA2.7e-22884.43Tyrosine--tRNA ligase OS=Cucumis sativus GN=Csa_4G025150 PE=3 SV=1[more]
A0A059APG6_EUCGR5.8e-19977.59Tyrosine--tRNA ligase (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_I01565 PE=3 SV... [more]
K7M864_SOYBN1.9e-19779.56Tyrosine--tRNA ligase OS=Glycine max GN=GLYMA_14G202100 PE=3 SV=1[more]
A0A061FA14_THECC1.6e-19676.76Tyrosine--tRNA ligase OS=Theobroma cacao GN=TCM_032159 PE=3 SV=1[more]
F6H622_VITVI7.8e-19674.65Tyrosine--tRNA ligase OS=Vitis vinifera GN=VIT_14s0036g00480 PE=3 SV=1[more]
BLAST of CmoCh04G003940 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G02660.11.7e-18671.00 Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial[more]
BLAST of CmoCh04G003940 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449458313|ref|XP_004146892.1|3.8e-22884.43PREDICTED: probable tyrosine--tRNA ligase, mitochondrial [Cucumis sativus][more]
gi|659107761|ref|XP_008453844.1|2.5e-22784.16PREDICTED: probable tyrosine--tRNA ligase, mitochondrial [Cucumis melo][more]
gi|629089480|gb|KCW55733.1|8.3e-19977.59hypothetical protein EUGRSUZ_I01565, partial [Eucalyptus grandis][more]
gi|356551940|ref|XP_003544330.1|2.7e-19779.56PREDICTED: tyrosine--tRNA ligase, chloroplastic/mitochondrial-like [Glycine max][more]
gi|702464441|ref|XP_010028900.1|3.5e-19773.18PREDICTED: probable tyrosine--tRNA ligase, mitochondrial [Eucalyptus grandis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001412aa-tRNA-synth_I_CS
IPR002305aa-tRNA-synth_Ic
IPR002307Tyr-tRNA-ligase
IPR002942S4_RNA-bd
IPR014729Rossmann-like_a/b/a_fold
IPR024088Tyr-tRNA-ligase_bac-type
IPR024107Tyr-tRNA-ligase_bac_1
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0004812aminoacyl-tRNA ligase activity
GO:0005524ATP binding
GO:0004831tyrosine-tRNA ligase activity
GO:0003723RNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006418tRNA aminoacylation for protein translation
GO:0006437tyrosyl-tRNA aminoacylation
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009658 chloroplast organization
biological_process GO:0000162 tryptophan biosynthetic process
biological_process GO:0006418 tRNA aminoacylation for protein translation
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0006437 tyrosyl-tRNA aminoacylation
biological_process GO:0006571 tyrosine biosynthetic process
biological_process GO:0010228 vegetative to reproductive phase transition of meristem
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0048481 plant ovule development
biological_process GO:0006655 phosphatidylglycerol biosynthetic process
biological_process GO:0009094 L-phenylalanine biosynthetic process
biological_process GO:0016226 iron-sulfur cluster assembly
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005829 cytosol
molecular_function GO:0005524 ATP binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0004831 tyrosine-tRNA ligase activity
molecular_function GO:0004812 aminoacyl-tRNA ligase activity
molecular_function GO:0000166 nucleotide binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G003940.1CmoCh04G003940.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001412Aminoacyl-tRNA synthetase, class I, conserved sitePROSITEPS00178AA_TRNA_LIGASE_Icoord: 100..110
scor
IPR002305Aminoacyl-tRNA synthetase, class IcPFAMPF00579tRNA-synt_1bcoord: 91..390
score: 2.6
IPR002307Tyrosine-tRNA ligasePRINTSPR01040TRNASYNTHTYRcoord: 228..243
score: 1.5E-26coord: 284..296
score: 1.5E-26coord: 104..126
score: 1.5E-26coord: 249..271
score: 1.5
IPR002307Tyrosine-tRNA ligaseTIGRFAMsTIGR00234TIGR00234coord: 65..489
score: 1.2E
IPR002942RNA-binding S4 domainGENE3DG3DSA:3.10.290.10coord: 385..490
score: 1.0
IPR002942RNA-binding S4 domainPFAMPF01479S4coord: 431..469
score: 3.
IPR002942RNA-binding S4 domainPROFILEPS50889S4coord: 424..490
score: 11
IPR014729Rossmann-like alpha/beta/alpha sandwich foldGENE3DG3DSA:3.40.50.620coord: 48..300
score: 5.9
IPR024088Tyrosine-tRNA ligase, bacterial-typePANTHERPTHR11766TYROSYL-TRNA SYNTHETASEcoord: 26..490
score: 1.8E
IPR024107Tyrosine-tRNA ligase, bacterial-type, type 1HAMAPMF_02006Tyr_tRNA_synth_type1coord: 64..490
score: 39
NoneNo IPR availableGENE3DG3DSA:1.10.240.10coord: 301..384
score: 2.8
NoneNo IPR availablePANTHERPTHR11766:SF0TYROSINE--TRNA LIGASE, MITOCHONDRIALcoord: 26..490
score: 1.8E
NoneNo IPR availableunknownSSF52374Nucleotidylyl transferasecoord: 65..390
score: 2.63
NoneNo IPR availableunknownSSF55174Alpha-L RNA-binding motifcoord: 393..489
score: 1.18

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh04G003940Cucsa.093940Cucumber (Gy14) v1cgycmoB0197
CmoCh04G003940CmaCh04G003730Cucurbita maxima (Rimu)cmacmoB728
CmoCh04G003940Cla010694Watermelon (97103) v1cmowmB687
CmoCh04G003940Csa4G025150Cucumber (Chinese Long) v2cmocuB700
CmoCh04G003940MELO3C017627Melon (DHL92) v3.5.1cmomeB694
CmoCh04G003940ClCG07G017190Watermelon (Charleston Gray)cmowcgB671
CmoCh04G003940CSPI04G04300Wild cucumber (PI 183967)cmocpiB708
CmoCh04G003940Lsi07G001370Bottle gourd (USVL1VR-Ls)cmolsiB690
CmoCh04G003940Cp4.1LG01g03350Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G003940MELO3C017627.2Melon (DHL92) v3.6.1cmomedB788
CmoCh04G003940CsaV3_4G004390Cucumber (Chinese Long) v3cmocucB0828
CmoCh04G003940Cla97C07G144210Watermelon (97103) v2cmowmbB749
CmoCh04G003940Bhi01G001987Wax gourdcmowgoB0851
CmoCh04G003940CsGy4G004210Cucumber (Gy14) v2cgybcmoB516
CmoCh04G003940Carg08047Silver-seed gourdcarcmoB0514
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G003940Cucurbita pepo (Zucchini)cmocpeB668
CmoCh04G003940Cucurbita pepo (Zucchini)cmocpeB707
CmoCh04G003940Bottle gourd (USVL1VR-Ls)cmolsiB614
CmoCh04G003940Silver-seed gourdcarcmoB0972
CmoCh04G003940Silver-seed gourdcarcmoB1177
CmoCh04G003940Cucumber (Chinese Long) v3cmocucB0871
CmoCh04G003940Watermelon (97103) v2cmowmbB678
CmoCh04G003940Wax gourdcmowgoB0810
CmoCh04G003940Cucurbita moschata (Rifu)cmocmoB286
CmoCh04G003940Cucurbita moschata (Rifu)cmocmoB435
CmoCh04G003940Cucurbita maxima (Rimu)cmacmoB338
CmoCh04G003940Watermelon (Charleston Gray)cmowcgB639