CmoCh04G001390 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G001390
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionRING/U-box superfamily protein, putative
LocationCmo_Chr04 : 715119 .. 715613 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGACACTCCAAGCCCCCCCGTCCGTCCACTGGCACTTCACGGAGCTCGACGATCGGATCTTCCAAATCCGCGGCCGGACTTTCTTCTTCATCGCCGTTCTATTCGCCGTCATCCTTCTCGTGACTTTTATTTTCCTTTACGCTCGATGGGTCTGCCGATACCATAGCCTCACGACCTTCTCTGCTTCCGTCCCTGGCGTCCGGTCCTCCAGGTCGCCGCCGCAACAGGGGCTCGACCAGGCGACAATTAACTGCCAATCAATAACTCTGTACAAGGCGGCGGAGGAAGTAGACGCCGCCGCCACCGCGGCGGAGTGCTGTATTTGCTTGGGCGTGTTTGAAGACGGCGAGAAGGTTAAGATTCTGGCGCTGTGCCATCATTGTTTCCACTCGGAGTGCGTGGACCAGTGGCTCCGGTTGCAGTCGAGCTGCCCGCTTTGTCGGATCTCCCTCCGCGCCGCCGATAACTCAAGCAATCTTCAAATGGTGTGA

mRNA sequence

ATGGCGACACTCCAAGCCCCCCCGTCCGTCCACTGGCACTTCACGGAGCTCGACGATCGGATCTTCCAAATCCGCGGCCGGACTTTCTTCTTCATCGCCGTTCTATTCGCCGTCATCCTTCTCGTGACTTTTATTTTCCTTTACGCTCGATGGGTCTGCCGATACCATAGCCTCACGACCTTCTCTGCTTCCGTCCCTGGCGTCCGGTCCTCCAGGTCGCCGCCGCAACAGGGGCTCGACCAGGCGACAATTAACTGCCAATCAATAACTCTGTACAAGGCGGCGGAGGAAGTAGACGCCGCCGCCACCGCGGCGGAGTGCTGTATTTGCTTGGGCGTGTTTGAAGACGGCGAGAAGGTTAAGATTCTGGCGCTGTGCCATCATTGTTTCCACTCGGAGTGCGTGGACCAGTGGCTCCGGTTGCAGTCGAGCTGCCCGCTTTGTCGGATCTCCCTCCGCGCCGCCGATAACTCAAGCAATCTTCAAATGGTGTGA

Coding sequence (CDS)

ATGGCGACACTCCAAGCCCCCCCGTCCGTCCACTGGCACTTCACGGAGCTCGACGATCGGATCTTCCAAATCCGCGGCCGGACTTTCTTCTTCATCGCCGTTCTATTCGCCGTCATCCTTCTCGTGACTTTTATTTTCCTTTACGCTCGATGGGTCTGCCGATACCATAGCCTCACGACCTTCTCTGCTTCCGTCCCTGGCGTCCGGTCCTCCAGGTCGCCGCCGCAACAGGGGCTCGACCAGGCGACAATTAACTGCCAATCAATAACTCTGTACAAGGCGGCGGAGGAAGTAGACGCCGCCGCCACCGCGGCGGAGTGCTGTATTTGCTTGGGCGTGTTTGAAGACGGCGAGAAGGTTAAGATTCTGGCGCTGTGCCATCATTGTTTCCACTCGGAGTGCGTGGACCAGTGGCTCCGGTTGCAGTCGAGCTGCCCGCTTTGTCGGATCTCCCTCCGCGCCGCCGATAACTCAAGCAATCTTCAAATGGTGTGA
Homology
[Close]
BLAST of CmoCh04G001390 vs. Swiss-Prot
Match: ATL66_ARATH (RING-H2 finger protein ATL66 OS=Arabidopsis thaliana GN=ATL66 PE=2 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 5.7e-27
Identity = 70/156 (44.87%), Postives = 90/156 (57.69%), Query Frame = 1 

Query: 5   QAPPSVHWHFTELDDRIFQIRGRTFFFIAVLFAVILLVTFIFLYARWVCRYHSLTTFSAS 64
           QA   ++WH  + DDR FQI GRT FF   LF+V+L    + LY    C         AS
Sbjct: 9   QASMLLYWHENQYDDRNFQIHGRTLFFALALFSVVLFFALLTLYIHRNCLPRDSINLHAS 68

Query: 65  VPGVRSSRSPPQQGLDQATINCQSITLYKA--AEEVDAAATAAECCICLGVFEDGEKVKI 124
            P  R +R     GLD A I    + L +   AEE +      ECCICLG FE+GEK+K+
Sbjct: 69  SPD-RLTRCR-SGGLDPAEIRSLPVVLCRRERAEEEEEK----ECCICLGGFEEGEKMKV 128

Query: 125 LALCHHCFHSECVDQWLRLQSSCPLCRISLRAADNS 159
           L  C HC+H ECVD+WL+ +SSCPLCR+S+R   +S
Sbjct: 129 LPPCSHCYHCECVDRWLKTESSCPLCRVSIRVDSSS 158

[Close]
BLAST of CmoCh04G001390 vs. Swiss-Prot
Match: ATL64_ARATH (RING-H2 finger protein ATL64 OS=Arabidopsis thaliana GN=ATL64 PE=2 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 8.0e-13
Identity = 41/119 (34.45%), Postives = 66/119 (55.46%), Query Frame = 1 

Query: 32  IAVLFAVILLVTFIFLYARWVCRYHSLTTFSASVPGVRS-SRSPPQQGLDQATINCQSIT 91
           + VLF  ++++     YARW+ R H+          +R+ S SP  Q LDQA ++   I 
Sbjct: 33  VIVLFVAVIMILCFHSYARWLFRRHNRRIRRRIRSHLRTLSASPRDQALDQAVLDKIPIF 92

Query: 92  LYKAAEEVDAAATAAECCICLGVFEDGEKVKILALCHHCFHSECVDQWLRLQSSCPLCR 150
           +Y +++         EC +CL  FE+ ++ ++L  C H FH +C+D W R +S+CPLCR
Sbjct: 93  VY-SSKNPPPPEEKEECSVCLSEFEEEDEGRLLPKCGHSFHVDCIDTWFRSRSTCPLCR 150

[Close]
BLAST of CmoCh04G001390 vs. Swiss-Prot
Match: ATL41_ORYSJ (E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica GN=Os04g0590900 PE=2 SV=2)

HSP 1 Score: 74.7 bits (182), Expect = 1.0e-12
Identity = 31/78 (39.74%), Postives = 46/78 (58.97%), Query Frame = 1 

Query: 75  PQQGLDQATINCQSITLYKAAEEVDAAATAAECCICLGVFEDGEKVKILALCHHCFHSEC 134
           P  GLD+  IN  ++  Y+     D      +C +CLG F DGE +++L  C H FH +C
Sbjct: 128 PPSGLDETLINKITVCKYRRG---DGFVHTTDCSVCLGEFSDGESLRLLPRCSHAFHQQC 187

Query: 135 VDQWLRLQSSCPLCRISL 153
           +D WL+  S+CPLCR ++
Sbjct: 188 IDTWLKSHSNCPLCRANI 202

[Close]
BLAST of CmoCh04G001390 vs. Swiss-Prot
Match: ATL15_ARATH (E3 ubiquitin-protein ligase ATL15 OS=Arabidopsis thaliana GN=ATL15 PE=1 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 4.0e-12
Identity = 50/141 (35.46%), Postives = 68/141 (48.23%), Query Frame = 1 

Query: 22  FQIRGRTFFFIAVLFAVILLVTFIF------LYARWVCRYHSLTTFSASVPG----VRSS 81
           F   GRT F       +I+LV+  F      +Y R  C  H+L   S   PG    VR +
Sbjct: 27  FDDEGRTSFSPTTAIIMIVLVSVFFALGCISVYMRR-CLQHALGMDSGGGPGNWLNVRQT 86

Query: 82  RSPPQQGLDQATINCQSITLYKAAEEVDAAATAAECCICLGVFEDGEKVKILALCHHCFH 141
             P   GLD + I       Y   + +     A EC +CL  FED E ++++  C H FH
Sbjct: 87  TEP---GLDASVIETFPTFPYSTVKTLRIGKEALECPVCLNEFEDDETLRLIPQCCHVFH 146

Query: 142 SECVDQWLRLQSSCPLCRISL 153
             C+D WLR Q++CPLCR +L
Sbjct: 147 PGCIDAWLRSQTTCPLCRANL 163

[Close]
BLAST of CmoCh04G001390 vs. Swiss-Prot
Match: ATL44_ARATH (Probable E3 ubiquitin-protein ligase ATL44 OS=Arabidopsis thaliana GN=ATL44 PE=2 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 4.0e-12
Identity = 34/79 (43.04%), Postives = 47/79 (59.49%), Query Frame = 1 

Query: 75  PQQGLDQATINCQSITLYKAAEEVDAAAT----AAECCICLGVFEDGEKVKILALCHHCF 134
           P +GL +  +     + + AAE    AA     + EC ICL  F DGE++++L LC H F
Sbjct: 66  PNKGLKKKALQSLPRSTFTAAESTSGAAAEEGDSTECAICLTDFADGEEIRVLPLCGHSF 125

Query: 135 HSECVDQWLRLQSSCPLCR 150
           H EC+D+WL  +SSCP CR
Sbjct: 126 HVECIDKWLVSRSSCPSCR 144

[Close]
BLAST of CmoCh04G001390 vs. TrEMBL
Match: A0A0A0KLZ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G210015 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 2.8e-57
Identity = 121/169 (71.60%), Postives = 131/169 (77.51%), Query Frame = 1 

Query: 1   MATLQAPPSVHWHFTELDDRIFQIRGRTFFFIAVLFAVILLVTFIFLYARWVCRYHSLTT 60
           MAT Q PPSV WHFTELDDR+FQIRGRTFFF+AVLFAVILLVTFIFLYARWVCR+H LTT
Sbjct: 1   MATSQVPPSVPWHFTELDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTT 60

Query: 61  FSASVPGVRSSRSPPQQGLDQATINCQSITLYK---AAEEVDAAAT--AAECCICLGVFE 120
           FSA +P  R   SPPQQGL   TI    ITLYK   A E+   AA   A EC ICLGVFE
Sbjct: 61  FSAPLPVHRLPSSPPQQGLGATTIISLPITLYKPPAAKEDAPGAAANDAGECSICLGVFE 120

Query: 121 DGEKVKILALCHHCFHSECVDQWLRLQSSCPLCRISLRAADNSSNLQMV 165
           DGEKVKIL  C HC+HSECVD+WLR  SSCPLCR+SL   D S+NL+MV
Sbjct: 121 DGEKVKILPPCRHCYHSECVDRWLRSHSSCPLCRVSL-CIDPSNNLEMV 168

[Close]
BLAST of CmoCh04G001390 vs. TrEMBL
Match: A0A061FKY9_THECC (RING/U-box superfamily protein, putative OS=Theobroma cacao GN=TCM_042472 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.3e-38
Identity = 87/172 (50.58%), Postives = 111/172 (64.53%), Query Frame = 1 

Query: 1   MATLQAPPSVHWHFTELDDRIFQIRGRTFFFIAVLFAVILLVTFIFLYARWVCRYHSLTT 60
           MA+ Q     HWH+ EL+DR FQIRGRT FFI VLF+ +L+ T IF+Y+RW+C +H   +
Sbjct: 1   MASSQDSQPFHWHYAELEDRDFQIRGRTLFFIIVLFSFVLVFTLIFVYSRWICSFHRDNS 60

Query: 61  FSASVPGVRSSRSPPQ-----QGLDQATINCQSITLYKAAEEVDAAATAA---ECCICLG 120
            + S     +S +PPQ     +GLD  TIN   IT+     +  AAA  A   ECCICLG
Sbjct: 61  STRSP----TSHAPPQPRPEPRGLDPVTINALPITMVTRGRKSAAAAAVALESECCICLG 120

Query: 121 VFEDGEKVKILALCHHCFHSECVDQWLRLQSSCPLCRISLRAADNSSNLQMV 165
           VFEDGEKVK+L  C H +HSECVD+WL  +SSCPLCR SLRA      + ++
Sbjct: 121 VFEDGEKVKVLPACQHSYHSECVDRWLSAESSCPLCRASLRAESELHQIPVI 168

[Close]
BLAST of CmoCh04G001390 vs. TrEMBL
Match: A0A067FNF6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031354mg PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 2.5e-37
Identity = 85/154 (55.19%), Postives = 106/154 (68.83%), Query Frame = 1 

Query: 1   MATLQAPPSVHWHFTELDDRIFQIRGRTFFFIAVLFAVILLVTFIFLYARWVCRYHSLTT 60
           MA+ ++ P  HWH+TELDD  FQIRGRT F I V+FAV+LLV+F+FLYARW CR  S   
Sbjct: 1   MASQESQP-FHWHYTELDDHNFQIRGRTLFSIIVVFAVVLLVSFLFLYARWFCRRFSHQN 60

Query: 61  FSASVPGVRSSRSPPQQGLDQATINCQSITLYKAAEEV-DAAATAAECCICLGVFEDGEK 120
            +  VP  + + +   +GLD  TIN   I L+++ +   D     +ECCICLGVFEDG+K
Sbjct: 61  SNPDVPRAQQALT---RGLDLTTINTLPIVLHRSEKSTKDDKEEESECCICLGVFEDGDK 120

Query: 121 VKILALCHHCFHSECVDQWLRLQSSCPLCRISLR 154
           VKIL  C HC+H ECVD WL  +SSCPLCR SLR
Sbjct: 121 VKILPKCRHCYHCECVDAWLSARSSCPLCRNSLR 150

[Close]
BLAST of CmoCh04G001390 vs. TrEMBL
Match: W9SF32_9ROSA (RING-H2 finger protein ATL66 OS=Morus notabilis GN=L484_000021 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 3.6e-36
Identity = 78/146 (53.42%), Postives = 96/146 (65.75%), Query Frame = 1 

Query: 8   PSVHWHFTELDDRIFQIRGRTFFFIAVLFAVILLVTFIFLYARWVCRYHSLTTFSASVPG 67
           P+  WH+T LDDR FQIRG+T FFI V+F+ +L+VT + LYARW CRY  +     +   
Sbjct: 8   PTTQWHYTVLDDRSFQIRGKTLFFIVVIFSALLVVTLLLLYARWACRYRHVAASPYASQP 67

Query: 68  VRSSRSPPQQGLDQATINCQSITLYKAAEEVDAAATAAECCICLGVFEDGEKVKILALCH 127
             +  +PP QGLD   I    +  +K+A   D    AAEC ICLGVFEDGEKVK+L  C 
Sbjct: 68  QTAPPNPPPQGLDAVAIKGLPVISHKSAPSSD---MAAECSICLGVFEDGEKVKVLPGCS 127

Query: 128 HCFHSECVDQWLRLQSSCPLCRISLR 154
           HC+H ECVD+WL  Q SCPLCR SLR
Sbjct: 128 HCYHPECVDRWLSAQPSCPLCRASLR 150

[Close]
BLAST of CmoCh04G001390 vs. TrEMBL
Match: B9SQP8_RICCO (RING-H2 finger protein ATL2N, putative OS=Ricinus communis GN=RCOM_0838840 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 8.0e-36
Identity = 80/153 (52.29%), Postives = 97/153 (63.40%), Query Frame = 1 

Query: 1   MATLQAPPSVHWHF-TELDDRIFQIRGRTFFFIAVLFAVILLVTFIFLYARWVCRYHSLT 60
           M++ +     HWHF TE  D  F+I GRT FF+ VLFA+++LVT +FLYARWVC Y    
Sbjct: 1   MSSQEYSQPFHWHFSTEPHDNGFEIHGRTLFFVVVLFALVILVTLLFLYARWVCHYQHHH 60

Query: 61  TFSASVPGVRSSRSPPQQGLDQATINCQSITLYKAAEEVDAAATAAECCICLGVFEDGEK 120
             S+         SP  QGL    I   SITL++++          ECCICLGVFEDG+K
Sbjct: 61  FPSSQANHAPHDLSPCHQGLHPTVIKAMSITLHRSSSSSLGYYCTTECCICLGVFEDGDK 120

Query: 121 VKILALCHHCFHSECVDQWLRLQSSCPLCRISL 153
           VK+L  C HCFHSECVD+WL  QSSCPLCR SL
Sbjct: 121 VKVLPECSHCFHSECVDKWLTAQSSCPLCRASL 153

[Close]
BLAST of CmoCh04G001390 vs. TAIR10
Match: AT3G11110.1 (AT3G11110.1 RING/U-box superfamily protein)

HSP 1 Score: 122.1 bits (305), Expect = 3.2e-28
Identity = 70/156 (44.87%), Postives = 90/156 (57.69%), Query Frame = 1 

Query: 5   QAPPSVHWHFTELDDRIFQIRGRTFFFIAVLFAVILLVTFIFLYARWVCRYHSLTTFSAS 64
           QA   ++WH  + DDR FQI GRT FF   LF+V+L    + LY    C         AS
Sbjct: 9   QASMLLYWHENQYDDRNFQIHGRTLFFALALFSVVLFFALLTLYIHRNCLPRDSINLHAS 68

Query: 65  VPGVRSSRSPPQQGLDQATINCQSITLYKA--AEEVDAAATAAECCICLGVFEDGEKVKI 124
            P  R +R     GLD A I    + L +   AEE +      ECCICLG FE+GEK+K+
Sbjct: 69  SPD-RLTRCR-SGGLDPAEIRSLPVVLCRRERAEEEEEK----ECCICLGGFEEGEKMKV 128

Query: 125 LALCHHCFHSECVDQWLRLQSSCPLCRISLRAADNS 159
           L  C HC+H ECVD+WL+ +SSCPLCR+S+R   +S
Sbjct: 129 LPPCSHCYHCECVDRWLKTESSCPLCRVSIRVDSSS 158

[Close]
BLAST of CmoCh04G001390 vs. TAIR10
Match: AT2G47560.1 (AT2G47560.1 RING/U-box superfamily protein)

HSP 1 Score: 75.1 bits (183), Expect = 4.5e-14
Identity = 41/119 (34.45%), Postives = 66/119 (55.46%), Query Frame = 1 

Query: 32  IAVLFAVILLVTFIFLYARWVCRYHSLTTFSASVPGVRS-SRSPPQQGLDQATINCQSIT 91
           + VLF  ++++     YARW+ R H+          +R+ S SP  Q LDQA ++   I 
Sbjct: 33  VIVLFVAVIMILCFHSYARWLFRRHNRRIRRRIRSHLRTLSASPRDQALDQAVLDKIPIF 92

Query: 92  LYKAAEEVDAAATAAECCICLGVFEDGEKVKILALCHHCFHSECVDQWLRLQSSCPLCR 150
           +Y +++         EC +CL  FE+ ++ ++L  C H FH +C+D W R +S+CPLCR
Sbjct: 93  VY-SSKNPPPPEEKEECSVCLSEFEEEDEGRLLPKCGHSFHVDCIDTWFRSRSTCPLCR 150

[Close]
BLAST of CmoCh04G001390 vs. TAIR10
Match: AT1G22500.1 (AT1G22500.1 RING/U-box superfamily protein)

HSP 1 Score: 72.8 bits (177), Expect = 2.2e-13
Identity = 50/141 (35.46%), Postives = 68/141 (48.23%), Query Frame = 1 

Query: 22  FQIRGRTFFFIAVLFAVILLVTFIF------LYARWVCRYHSLTTFSASVPG----VRSS 81
           F   GRT F       +I+LV+  F      +Y R  C  H+L   S   PG    VR +
Sbjct: 27  FDDEGRTSFSPTTAIIMIVLVSVFFALGCISVYMRR-CLQHALGMDSGGGPGNWLNVRQT 86

Query: 82  RSPPQQGLDQATINCQSITLYKAAEEVDAAATAAECCICLGVFEDGEKVKILALCHHCFH 141
             P   GLD + I       Y   + +     A EC +CL  FED E ++++  C H FH
Sbjct: 87  TEP---GLDASVIETFPTFPYSTVKTLRIGKEALECPVCLNEFEDDETLRLIPQCCHVFH 146

Query: 142 SECVDQWLRLQSSCPLCRISL 153
             C+D WLR Q++CPLCR +L
Sbjct: 147 PGCIDAWLRSQTTCPLCRANL 163

[Close]
BLAST of CmoCh04G001390 vs. TAIR10
Match: AT2G17450.1 (AT2G17450.1 RING-H2 finger A3A)

HSP 1 Score: 72.8 bits (177), Expect = 2.2e-13
Identity = 34/79 (43.04%), Postives = 47/79 (59.49%), Query Frame = 1 

Query: 75  PQQGLDQATINCQSITLYKAAEEVDAAAT----AAECCICLGVFEDGEKVKILALCHHCF 134
           P +GL +  +     + + AAE    AA     + EC ICL  F DGE++++L LC H F
Sbjct: 66  PNKGLKKKALQSLPRSTFTAAESTSGAAAEEGDSTECAICLTDFADGEEIRVLPLCGHSF 125

Query: 135 HSECVDQWLRLQSSCPLCR 150
           H EC+D+WL  +SSCP CR
Sbjct: 126 HVECIDKWLVSRSSCPSCR 144

[Close]
BLAST of CmoCh04G001390 vs. TAIR10
Match: AT4G40070.1 (AT4G40070.1 RING/U-box superfamily protein)

HSP 1 Score: 72.4 bits (176), Expect = 2.9e-13
Identity = 43/127 (33.86%), Postives = 65/127 (51.18%), Query Frame = 1 

Query: 33  AVLFAVILLVTFIFLYARWVCRYH--SLTTFSASVPGVRSSRSPPQQGLDQATINCQSIT 92
           AVL  +  L   + +Y R   R +  S T +  +     SSR   + GLD A +    + 
Sbjct: 51  AVLVTLFFLTGLLSVYIRHCARSNPDSSTRYFRNRANDGSSR---RGGLDNAVVESFPVF 110

Query: 93  LYKAAEEVDAAATAAECCICLGVFEDGEKVKILALCHHCFHSECVDQWLRLQSSCPLCRI 152
            Y + +E    +   EC ICL   ED E V++L +C+H FH +C+D WL   ++CP+CR 
Sbjct: 111 AYSSVKESKIGSKDLECAICLNELEDHETVRLLPICNHLFHIDCIDTWLYSHATCPVCRS 170

Query: 153 SLRAADN 158
           +L A  N
Sbjct: 171 NLTAKSN 174

[Close]
BLAST of CmoCh04G001390 vs. NCBI nr
Match: gi|659109653|ref|XP_008454808.1| (PREDICTED: RING-H2 finger protein ATL66 [Cucumis melo])

HSP 1 Score: 234.6 bits (597), Expect = 1.3e-58
Identity = 125/169 (73.96%), Postives = 135/169 (79.88%), Query Frame = 1 

Query: 1   MATLQAPPSVHWHFTELDDRIFQIRGRTFFFIAVLFAVILLVTFIFLYARWVCRYHSLTT 60
           MAT Q PPSV WHFTELDDR+FQIRGRTFFF+AVLFAVILLVTFIFLYARWVCR+H LTT
Sbjct: 1   MATSQVPPSVPWHFTELDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTT 60

Query: 61  FSASVPGVRSSRSPP-QQGLDQATINCQSITLYKA-AEEVD---AAATAAECCICLGVFE 120
           FSAS+P  R  RSPP QQGL    IN   ITLYKA A E D   AA+ A EC ICLGVFE
Sbjct: 61  FSASLPVRRQPRSPPQQQGLGATAINSLPITLYKAPAAEEDPPAAASDAGECSICLGVFE 120

Query: 121 DGEKVKILALCHHCFHSECVDQWLRLQSSCPLCRISLRAADNSSNLQMV 165
           DGEKVKIL  C HC+HSECVD+WLR  SSCPLCR+SL   D S+NL+MV
Sbjct: 121 DGEKVKILPPCRHCYHSECVDRWLRSHSSCPLCRVSL-CIDPSNNLEMV 168

[Close]
BLAST of CmoCh04G001390 vs. NCBI nr
Match: gi|700195498|gb|KGN50675.1| (hypothetical protein Csa_5G210015 [Cucumis sativus])

HSP 1 Score: 229.6 bits (584), Expect = 4.0e-57
Identity = 121/169 (71.60%), Postives = 131/169 (77.51%), Query Frame = 1 

Query: 1   MATLQAPPSVHWHFTELDDRIFQIRGRTFFFIAVLFAVILLVTFIFLYARWVCRYHSLTT 60
           MAT Q PPSV WHFTELDDR+FQIRGRTFFF+AVLFAVILLVTFIFLYARWVCR+H LTT
Sbjct: 1   MATSQVPPSVPWHFTELDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTT 60

Query: 61  FSASVPGVRSSRSPPQQGLDQATINCQSITLYK---AAEEVDAAAT--AAECCICLGVFE 120
           FSA +P  R   SPPQQGL   TI    ITLYK   A E+   AA   A EC ICLGVFE
Sbjct: 61  FSAPLPVHRLPSSPPQQGLGATTIISLPITLYKPPAAKEDAPGAAANDAGECSICLGVFE 120

Query: 121 DGEKVKILALCHHCFHSECVDQWLRLQSSCPLCRISLRAADNSSNLQMV 165
           DGEKVKIL  C HC+HSECVD+WLR  SSCPLCR+SL   D S+NL+MV
Sbjct: 121 DGEKVKILPPCRHCYHSECVDRWLRSHSSCPLCRVSL-CIDPSNNLEMV 168

[Close]
BLAST of CmoCh04G001390 vs. NCBI nr
Match: gi|778708415|ref|XP_004148199.2| (PREDICTED: RING-H2 finger protein ATL66 [Cucumis sativus])

HSP 1 Score: 227.6 bits (579), Expect = 1.5e-56
Identity = 120/168 (71.43%), Postives = 130/168 (77.38%), Query Frame = 1 

Query: 1   MATLQAPPSVHWHFTELDDRIFQIRGRTFFFIAVLFAVILLVTFIFLYARWVCRYHSLTT 60
           MAT Q PPSV WHFTELDDR+FQIRGRTFFF+AVLFAVILLVTFIFLYARWVCR+H LTT
Sbjct: 1   MATSQVPPSVPWHFTELDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTT 60

Query: 61  FSASVPGVRSSRSPPQQGLDQATINCQSITLYK---AAEEVDAAAT--AAECCICLGVFE 120
           FSA +P  R   SPPQQGL   TI    ITLYK   A E+   AA   A EC ICLGVFE
Sbjct: 61  FSAPLPVHRLPSSPPQQGLGATTIISLPITLYKPPAAKEDAPGAAANDAGECSICLGVFE 120

Query: 121 DGEKVKILALCHHCFHSECVDQWLRLQSSCPLCRISLRAADNSSNLQM 164
           DGEKVKIL  C HC+HSECVD+WLR  SSCPLCR+SL   D S+NL+M
Sbjct: 121 DGEKVKILPPCRHCYHSECVDRWLRSHSSCPLCRVSL-CIDPSNNLEM 167

[Close]
BLAST of CmoCh04G001390 vs. NCBI nr
Match: gi|698500514|ref|XP_009796011.1| (PREDICTED: RING-H2 finger protein ATL66-like [Nicotiana sylvestris])

HSP 1 Score: 172.2 bits (435), Expect = 7.7e-40
Identity = 80/145 (55.17%), Postives = 104/145 (71.72%), Query Frame = 1 

Query: 9   SVHWHFTELDDRIFQIRGRTFFFIAVLFAVILLVTFIFLYARWVCRYHSLTTFSASVPGV 68
           S HWH+ E DD  FQIRGRT FF+ VLFA+IL+ T +FLYARWVC++ S ++  A+    
Sbjct: 27  SFHWHYAEFDDNDFQIRGRTLFFVVVLFAIILIATLLFLYARWVCKFRSPSSAEAARSSH 86

Query: 69  RSSRSPPQQGLDQATINCQSITLYKAAEEVDAAATAAECCICLGVFEDGEKVKILALCHH 128
             S  PP QGLD A I+   I L+++++     A   ECCICLG+F+DG+KVK+L  C H
Sbjct: 87  APSVPPPPQGLDPAFIDNLPIILHRSSDCRGNTAAEVECCICLGIFQDGDKVKVLPSCQH 146

Query: 129 CFHSECVDQWLRLQSSCPLCRISLR 154
           C+HSECVD+WLR QSSCPLCR S++
Sbjct: 147 CYHSECVDKWLRNQSSCPLCRASIQ 171

[Close]
BLAST of CmoCh04G001390 vs. NCBI nr
Match: gi|697113112|ref|XP_009610438.1| (PREDICTED: RING-H2 finger protein ATL66-like [Nicotiana tomentosiformis])

HSP 1 Score: 171.8 bits (434), Expect = 1.0e-39
Identity = 83/146 (56.85%), Postives = 104/146 (71.23%), Query Frame = 1 

Query: 9   SVHWHFTELDDRIFQIRGRTFFFIAVLFAVILLVTFIFLYARWVCRYHS-LTTFSASVPG 68
           S HWH+ E DD  FQIRGRT FF+ VLFA+IL+ T +FLYARWVC++ S L+  +A    
Sbjct: 27  SFHWHYAEFDDNDFQIRGRTLFFVVVLFAIILIATLLFLYARWVCKFRSPLSAEAARSAH 86

Query: 69  VRSSRSPPQQGLDQATINCQSITLYKAAEEVDAAATAAECCICLGVFEDGEKVKILALCH 128
             SS  PP QGLD A I+   I L++ ++     A   ECCICLG+F+DG+KVK+L  C 
Sbjct: 87  APSSVPPPPQGLDPAFIDNLPIILHRTSDCRGNTAAEVECCICLGIFQDGDKVKVLPSCQ 146

Query: 129 HCFHSECVDQWLRLQSSCPLCRISLR 154
           HC+HSECVD+WLR QSSCPLCR SL+
Sbjct: 147 HCYHSECVDKWLRNQSSCPLCRASLQ 172

The following BLAST results are available for this feature:
BLAST of CmoCh04G001390 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ATL66_ARATH5.7e-2744.87RING-H2 finger protein ATL66 OS=Arabidopsis thaliana GN=ATL66 PE=2 SV=1[more]
ATL64_ARATH8.0e-1334.45RING-H2 finger protein ATL64 OS=Arabidopsis thaliana GN=ATL64 PE=2 SV=1[more]
ATL41_ORYSJ1.0e-1239.74E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica GN=Os04... [more]
ATL15_ARATH4.0e-1235.46E3 ubiquitin-protein ligase ATL15 OS=Arabidopsis thaliana GN=ATL15 PE=1 SV=1[more]
ATL44_ARATH4.0e-1243.04Probable E3 ubiquitin-protein ligase ATL44 OS=Arabidopsis thaliana GN=ATL44 PE=2... [more]
BLAST of CmoCh04G001390 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KLZ2_CUCSA2.8e-5771.60Uncharacterized protein OS=Cucumis sativus GN=Csa_5G210015 PE=4 SV=1[more]
A0A061FKY9_THECC1.3e-3850.58RING/U-box superfamily protein, putative OS=Theobroma cacao GN=TCM_042472 PE=4 S... [more]
A0A067FNF6_CITSI2.5e-3755.19Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031354mg PE=4 SV=1[more]
W9SF32_9ROSA3.6e-3653.42RING-H2 finger protein ATL66 OS=Morus notabilis GN=L484_000021 PE=4 SV=1[more]
B9SQP8_RICCO8.0e-3652.29RING-H2 finger protein ATL2N, putative OS=Ricinus communis GN=RCOM_0838840 PE=4 ... [more]
BLAST of CmoCh04G001390 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G11110.13.2e-2844.87 RING/U-box superfamily protein[more]
AT2G47560.14.5e-1434.45 RING/U-box superfamily protein[more]
AT1G22500.12.2e-1335.46 RING/U-box superfamily protein[more]
AT2G17450.12.2e-1343.04 RING-H2 finger A3A[more]
AT4G40070.12.9e-1333.86 RING/U-box superfamily protein[more]
BLAST of CmoCh04G001390 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659109653|ref|XP_008454808.1|1.3e-5873.96PREDICTED: RING-H2 finger protein ATL66 [Cucumis melo][more]
gi|700195498|gb|KGN50675.1|4.0e-5771.60hypothetical protein Csa_5G210015 [Cucumis sativus][more]
gi|778708415|ref|XP_004148199.2|1.5e-5671.43PREDICTED: RING-H2 finger protein ATL66 [Cucumis sativus][more]
gi|698500514|ref|XP_009796011.1|7.7e-4055.17PREDICTED: RING-H2 finger protein ATL66-like [Nicotiana sylvestris][more]
gi|697113112|ref|XP_009610438.1|1.0e-3956.85PREDICTED: RING-H2 finger protein ATL66-like [Nicotiana tomentosiformis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G001390.1CmoCh04G001390.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 106..149
score: 7.6
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 107..148
score: 6.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 107..149
score: 11
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 104..151
score: 9.8
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 24..163
score: 1.1
NoneNo IPR availablePANTHERPTHR14155:SF100RING-H2 FINGER PROTEIN ATL66coord: 24..163
score: 1.1
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 106..154
score: 3.53

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh04G001390Cucsa.368380Cucumber (Gy14) v1cgycmoB1022
CmoCh04G001390CmaCh04G001430Cucurbita maxima (Rimu)cmacmoB728
CmoCh04G001390Cla004365Watermelon (97103) v1cmowmB685
CmoCh04G001390MELO3C018366Melon (DHL92) v3.5.1cmomeB635
CmoCh04G001390ClCG07G004370Watermelon (Charleston Gray)cmowcgB676
CmoCh04G001390CSPI05G10840Wild cucumber (PI 183967)cmocpiB747
CmoCh04G001390Lsi04G010850Bottle gourd (USVL1VR-Ls)cmolsiB663
CmoCh04G001390MELO3C018366.2Melon (DHL92) v3.6.1cmomedB722
CmoCh04G001390CsaV3_5G010310Cucumber (Chinese Long) v3cmocucB0873
CmoCh04G001390Cla97C07G132830Watermelon (97103) v2cmowmbB755
CmoCh04G001390Bhi07G000489Wax gourdcmowgoB0889
CmoCh04G001390CsGy5G008170Cucumber (Gy14) v2cgybcmoB652
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh04G001390Cucurbita pepo (Zucchini)cmocpeB673
CmoCh04G001390Cucurbita pepo (Zucchini)cmocpeB674
CmoCh04G001390Cucurbita pepo (Zucchini)cmocpeB695
CmoCh04G001390Bottle gourd (USVL1VR-Ls)cmolsiB639
CmoCh04G001390Cucumber (Gy14) v2cgybcmoB125
CmoCh04G001390Silver-seed gourdcarcmoB0123
CmoCh04G001390Silver-seed gourdcarcmoB0924
CmoCh04G001390Cucumber (Chinese Long) v3cmocucB0806
CmoCh04G001390Watermelon (97103) v2cmowmbB721
CmoCh04G001390Wax gourdcmowgoB0884
CmoCh04G001390Cucurbita moschata (Rifu)cmocmoB187
CmoCh04G001390Cucurbita moschata (Rifu)cmocmoB464
CmoCh04G001390Cucurbita maxima (Rimu)cmacmoB239
CmoCh04G001390Cucurbita maxima (Rimu)cmacmoB731
CmoCh04G001390Wild cucumber (PI 183967)cmocpiB692
CmoCh04G001390Cucumber (Chinese Long) v2cmocuB678
CmoCh04G001390Cucumber (Chinese Long) v2cmocuB737
CmoCh04G001390Melon (DHL92) v3.5.1cmomeB661
CmoCh04G001390Watermelon (Charleston Gray)cmowcgB649
CmoCh04G001390Watermelon (97103) v1cmowmB669