CmaCh04G001430 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh04G001430
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionRing finger protein, putative
LocationCma_Chr04 : 686821 .. 687468 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTGACACTGTTCCAAAAGCCCAAGAACCTTTCCCCTTCTTCCTCTACCCTTTTCCTCCGCCGCTACGATTCTCCGGACACCGTATCCGCCGCCGTGGGGATTCCTCTGTTTGTTTTGATGAGTTGGAGGTTGTAATGGCGACACTCCAAGCCCCCCCGTCCGTCCACTGGCACTTCACGGAGCTCGACGATCGGATCTTCCAAATCCGCGGCCGGACTATCTTCTTCATCGCCGTTCTATTCGCCGTCATCCTTCTCGTGACTTTTATTTTCCTTTACGCTCGATGGGTCTGCCGATACCATAGCCTCATGACCTTCTCTACTGCCGTCCCTGGCGTCCGGTCGTCCAGGTCGCCGCCGCAACAGGGGCTCGACCAGGCGGCAATTAACTGCCAGCCAATAACTTTGTACAAGGAGGCGGCGGCGGTGGAGGAAGCAGCCGCCACCCCCGCCGCCACCGCGGCGGAGTGCTGTATTTGCTTGGGTGTGTTTGAAGATGGGGAGAAGGTTAAGATTCTGGCGCTGTGCCATCATTGTTTCCACTCGGAGTGCGTGGACCAGTGGCTCCGGTTGCAGTCGAGCTGCCCGCTTTGTCGCATCTCCCTCCGCGCCGCCGATAACTCAAACAATCTTCAAATGGTGTGA

mRNA sequence

ATGTCTGACACTGTTCCAAAAGCCCAAGAACCTTTCCCCTTCTTCCTCTACCCTTTTCCTCCGCCGCTACGATTCTCCGGACACCGTATCCGCCGCCGTGGGGATTCCTCTGTTTGTTTTGATGAGTTGGAGGTTGTAATGGCGACACTCCAAGCCCCCCCGTCCGTCCACTGGCACTTCACGGAGCTCGACGATCGGATCTTCCAAATCCGCGGCCGGACTATCTTCTTCATCGCCGTTCTATTCGCCGTCATCCTTCTCGTGACTTTTATTTTCCTTTACGCTCGATGGGTCTGCCGATACCATAGCCTCATGACCTTCTCTACTGCCGTCCCTGGCGTCCGGTCGTCCAGGTCGCCGCCGCAACAGGGGCTCGACCAGGCGGCAATTAACTGCCAGCCAATAACTTTGTACAAGGAGGCGGCGGCGGTGGAGGAAGCAGCCGCCACCCCCGCCGCCACCGCGGCGGAGTGCTGTATTTGCTTGGGTGTGTTTGAAGATGGGGAGAAGGTTAAGATTCTGGCGCTGTGCCATCATTGTTTCCACTCGGAGTGCGTGGACCAGTGGCTCCGGTTGCAGTCGAGCTGCCCGCTTTGTCGCATCTCCCTCCGCGCCGCCGATAACTCAAACAATCTTCAAATGGTGTGA

Coding sequence (CDS)

ATGTCTGACACTGTTCCAAAAGCCCAAGAACCTTTCCCCTTCTTCCTCTACCCTTTTCCTCCGCCGCTACGATTCTCCGGACACCGTATCCGCCGCCGTGGGGATTCCTCTGTTTGTTTTGATGAGTTGGAGGTTGTAATGGCGACACTCCAAGCCCCCCCGTCCGTCCACTGGCACTTCACGGAGCTCGACGATCGGATCTTCCAAATCCGCGGCCGGACTATCTTCTTCATCGCCGTTCTATTCGCCGTCATCCTTCTCGTGACTTTTATTTTCCTTTACGCTCGATGGGTCTGCCGATACCATAGCCTCATGACCTTCTCTACTGCCGTCCCTGGCGTCCGGTCGTCCAGGTCGCCGCCGCAACAGGGGCTCGACCAGGCGGCAATTAACTGCCAGCCAATAACTTTGTACAAGGAGGCGGCGGCGGTGGAGGAAGCAGCCGCCACCCCCGCCGCCACCGCGGCGGAGTGCTGTATTTGCTTGGGTGTGTTTGAAGATGGGGAGAAGGTTAAGATTCTGGCGCTGTGCCATCATTGTTTCCACTCGGAGTGCGTGGACCAGTGGCTCCGGTTGCAGTCGAGCTGCCCGCTTTGTCGCATCTCCCTCCGCGCCGCCGATAACTCAAACAATCTTCAAATGGTGTGA

Protein sequence

MSDTVPKAQEPFPFFLYPFPPPLRFSGHRIRRRGDSSVCFDELEVVMATLQAPPSVHWHFTELDDRIFQIRGRTIFFIAVLFAVILLVTFIFLYARWVCRYHSLMTFSTAVPGVRSSRSPPQQGLDQAAINCQPITLYKEAAAVEEAAATPAATAAECCICLGVFEDGEKVKILALCHHCFHSECVDQWLRLQSSCPLCRISLRAADNSNNLQMV
Homology
[Close]
BLAST of CmaCh04G001430 vs. Swiss-Prot
Match: ATL66_ARATH (RING-H2 finger protein ATL66 OS=Arabidopsis thaliana GN=ATL66 PE=2 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 8.8e-28
Identity = 69/159 (43.40%), Postives = 91/159 (57.23%), Query Frame = 1 

Query: 51  QAPPSVHWHFTELDDRIFQIRGRTIFFIAVLFAVILLVTFIFLYARWVCRYHSLMTFSTA 110
           QA   ++WH  + DDR FQI GRT+FF   LF+V+L    + LY    C     +    +
Sbjct: 9   QASMLLYWHENQYDDRNFQIHGRTLFFALALFSVVLFFALLTLYIHRNCLPRDSINLHAS 68

Query: 111 VPGVRSSRSPPQQGLDQAAINCQPITLYKEAAAVEEAAATPAATAAECCICLGVFEDGEK 170
            P  R +R     GLD A I   P+ L +   A EE          ECCICLG FE+GEK
Sbjct: 69  SPD-RLTRCR-SGGLDPAEIRSLPVVLCRRERAEEEEEK-------ECCICLGGFEEGEK 128

Query: 171 VKILALCHHCFHSECVDQWLRLQSSCPLCRISLRAADNS 210
           +K+L  C HC+H ECVD+WL+ +SSCPLCR+S+R   +S
Sbjct: 129 MKVLPPCSHCYHCECVDRWLKTESSCPLCRVSIRVDSSS 158

[Close]
BLAST of CmaCh04G001430 vs. Swiss-Prot
Match: ATL65_ARATH (RING-H2 finger protein ATL65 OS=Arabidopsis thaliana GN=ATL65 PE=2 SV=2)

HSP 1 Score: 78.2 bits (191), Expect = 1.2e-13
Identity = 55/159 (34.59%), Postives = 73/159 (45.91%), Query Frame = 1 

Query: 75  IFFIAVLFAVILLVTFIFL------------YARWVCRYHSLMTFSTAVPGVRSSR---- 134
           I  + VL A  L VT+  L            + RW CR   L+  S+A     SS     
Sbjct: 43  IAMVVVLAAAFLFVTYSRLISRRFLSPLFRRFRRWRCRRRRLLHLSSASSASTSSSDLRS 102

Query: 135 ------------SPPQQGLDQAAINCQPITLYKEAAAVEEAAA--TPAATAAECCICLGV 194
                       S    GLD + I   P+ LY  AA   + A   T AA   +C +CL  
Sbjct: 103 FSPFPFDSFHYSSYSPYGLDDSVIKTLPLFLYSAAACTGKPAVGKTSAANCRDCAVCLLE 162

Query: 195 FEDGEKVKILALCHHCFHSECVDQWLRLQSSCPLCRISL 204
           FE+G+ V+ L LC H FH EC+D+WLR   +CPLCR ++
Sbjct: 163 FEEGDYVRTLPLCFHAFHLECIDEWLRSHPNCPLCRTAI 201

[Close]
BLAST of CmaCh04G001430 vs. Swiss-Prot
Match: ATL64_ARATH (RING-H2 finger protein ATL64 OS=Arabidopsis thaliana GN=ATL64 PE=2 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.6e-13
Identity = 43/124 (34.68%), Postives = 65/124 (52.42%), Query Frame = 1 

Query: 78  IAVLFAVILLVTFIFLYARWVCRYHSLMTFSTAVPGVRS-SRSPPQQGLDQAAINCQPIT 137
           + VLF  ++++     YARW+ R H+          +R+ S SP  Q LDQA ++  PI 
Sbjct: 33  VIVLFVAVIMILCFHSYARWLFRRHNRRIRRRIRSHLRTLSASPRDQALDQAVLDKIPIF 92

Query: 138 LYKEAAAVEEAAATPAATAAECCICLGVFEDGEKVKILALCHHCFHSECVDQWLRLQSSC 197
           +Y            P     EC +CL  FE+ ++ ++L  C H FH +C+D W R +S+C
Sbjct: 93  VYSSKNP------PPPEEKEECSVCLSEFEEEDEGRLLPKCGHSFHVDCIDTWFRSRSTC 150

Query: 198 PLCR 201
           PLCR
Sbjct: 153 PLCR 150

[Close]
BLAST of CmaCh04G001430 vs. Swiss-Prot
Match: ATL2_ARATH (RING-H2 finger protein ATL2 OS=Arabidopsis thaliana GN=ATL2 PE=2 SV=2)

HSP 1 Score: 75.9 bits (185), Expect = 6.1e-13
Identity = 46/136 (33.82%), Postives = 65/136 (47.79%), Query Frame = 1 

Query: 78  IAVLFAVILLVTFIFLYARWVC----RYH---------SLMTFSTAVPGVRSSRSPPQQG 137
           I +LF V++L+ F+ LYARW      R H         + M F TA P   ++     +G
Sbjct: 35  IVILFFVVILMVFLHLYARWYLLRARRRHLRRRSRNRRATMVFFTADPSTAATSVVASRG 94

Query: 138 LDQAAINCQPITLYKEAAAVEEAAATPAATAAECCICLGVFEDGEKVKILALCHHCFHSE 197
           LD   I   P+  + +     E    P     EC +CL  FE+ E  ++L  C H FH +
Sbjct: 95  LDPNVIKSLPVFTFSD-----ETHKDPI----ECAVCLSEFEESETGRVLPNCQHTFHVD 154

Query: 198 CVDQWLRLQSSCPLCR 201
           C+D W    S+CPLCR
Sbjct: 155 CIDMWFHSHSTCPLCR 161

[Close]
BLAST of CmaCh04G001430 vs. Swiss-Prot
Match: ATL44_ARATH (Probable E3 ubiquitin-protein ligase ATL44 OS=Arabidopsis thaliana GN=ATL44 PE=2 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 5.2e-12
Identity = 35/80 (43.75%), Postives = 49/80 (61.25%), Query Frame = 1 

Query: 121 PQQGLDQAAINCQPITLYKEAAAVEEAAATPAATAAECCICLGVFEDGEKVKILALCHHC 180
           P +GL + A+   P + +  A +   AAA     + EC ICL  F DGE++++L LC H 
Sbjct: 66  PNKGLKKKALQSLPRSTFTAAESTSGAAAEEG-DSTECAICLTDFADGEEIRVLPLCGHS 125

Query: 181 FHSECVDQWLRLQSSCPLCR 201
           FH EC+D+WL  +SSCP CR
Sbjct: 126 FHVECIDKWLVSRSSCPSCR 144

[Close]
BLAST of CmaCh04G001430 vs. TrEMBL
Match: A0A0A0KLZ2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G210015 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 2.0e-58
Identity = 120/169 (71.01%), Postives = 129/169 (76.33%), Query Frame = 1 

Query: 47  MATLQAPPSVHWHFTELDDRIFQIRGRTIFFIAVLFAVILLVTFIFLYARWVCRYHSLMT 106
           MAT Q PPSV WHFTELDDR+FQIRGRT FF+AVLFAVILLVTFIFLYARWVCR+H L T
Sbjct: 1   MATSQVPPSVPWHFTELDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTT 60

Query: 107 FSTAVPGVRSSRSPPQQGLDQAAINCQPITLYKEAAAVEEAAATPAATAAECCICLGVFE 166
           FS  +P  R   SPPQQGL    I   PITLYK  AA E+A    A  A EC ICLGVFE
Sbjct: 61  FSAPLPVHRLPSSPPQQGLGATTIISLPITLYKPPAAKEDAPGAAANDAGECSICLGVFE 120

Query: 167 DGEKVKILALCHHCFHSECVDQWLRLQSSCPLCRISLRAADNSNNLQMV 216
           DGEKVKIL  C HC+HSECVD+WLR  SSCPLCR+SL   D SNNL+MV
Sbjct: 121 DGEKVKILPPCRHCYHSECVDRWLRSHSSCPLCRVSL-CIDPSNNLEMV 168

[Close]
BLAST of CmaCh04G001430 vs. TrEMBL
Match: A0A061FKY9_THECC (RING/U-box superfamily protein, putative OS=Theobroma cacao GN=TCM_042472 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 2.7e-39
Identity = 89/174 (51.15%), Postives = 115/174 (66.09%), Query Frame = 1 

Query: 47  MATLQAPPSVHWHFTELDDRIFQIRGRTIFFIAVLFAVILLVTFIFLYARWVCRYHSLMT 106
           MA+ Q     HWH+ EL+DR FQIRGRT+FFI VLF+ +L+ T IF+Y+RW+C +H   +
Sbjct: 1   MASSQDSQPFHWHYAELEDRDFQIRGRTLFFIIVLFSFVLVFTLIFVYSRWICSFHRDNS 60

Query: 107 FSTAVPGVRSSRSPPQ-----QGLDQAAINCQPITLYKEAAAVEEAAATPAATAAECCIC 166
            ST  P   +S +PPQ     +GLD   IN  PIT+       + AAA   A  +ECCIC
Sbjct: 61  -STRSP---TSHAPPQPRPEPRGLDPVTINALPITMVTRGR--KSAAAAAVALESECCIC 120

Query: 167 LGVFEDGEKVKILALCHHCFHSECVDQWLRLQSSCPLCRISLRAADNSNNLQMV 216
           LGVFEDGEKVK+L  C H +HSECVD+WL  +SSCPLCR SLRA    + + ++
Sbjct: 121 LGVFEDGEKVKVLPACQHSYHSECVDRWLSAESSCPLCRASLRAESELHQIPVI 168

[Close]
BLAST of CmaCh04G001430 vs. TrEMBL
Match: A0A067FNF6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031354mg PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 4.2e-37
Identity = 85/158 (53.80%), Postives = 107/158 (67.72%), Query Frame = 1 

Query: 47  MATLQAPPSVHWHFTELDDRIFQIRGRTIFFIAVLFAVILLVTFIFLYARWVCRYHSLMT 106
           MA+ ++ P  HWH+TELDD  FQIRGRT+F I V+FAV+LLV+F+FLYARW CR  S   
Sbjct: 1   MASQESQP-FHWHYTELDDHNFQIRGRTLFSIIVVFAVVLLVSFLFLYARWFCRRFSHQN 60

Query: 107 FSTAVPGVRSSRSPPQQGLDQAAINCQPITLYKEAAAVEEAAATPAATAAECCICLGVFE 166
            +  VP  + + +   +GLD   IN  PI L++     E++        +ECCICLGVFE
Sbjct: 61  SNPDVPRAQQALT---RGLDLTTINTLPIVLHRS----EKSTKDDKEEESECCICLGVFE 120

Query: 167 DGEKVKILALCHHCFHSECVDQWLRLQSSCPLCRISLR 205
           DG+KVKIL  C HC+H ECVD WL  +SSCPLCR SLR
Sbjct: 121 DGDKVKILPKCRHCYHCECVDAWLSARSSCPLCRNSLR 150

[Close]
BLAST of CmaCh04G001430 vs. TrEMBL
Match: W9SF32_9ROSA (RING-H2 finger protein ATL66 OS=Morus notabilis GN=L484_000021 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.2e-36
Identity = 80/151 (52.98%), Postives = 99/151 (65.56%), Query Frame = 1 

Query: 54  PSVHWHFTELDDRIFQIRGRTIFFIAVLFAVILLVTFIFLYARWVCRYHSLMTFSTAVPG 113
           P+  WH+T LDDR FQIRG+T+FFI V+F+ +L+VT + LYARW CRY  +     A   
Sbjct: 8   PTTQWHYTVLDDRSFQIRGKTLFFIVVIFSALLVVTLLLLYARWACRYRHVAASPYASQP 67

Query: 114 VRSSRSPPQQGLDQAAINCQPITLYKEAAAVEEAAATPAATAAECCICLGVFEDGEKVKI 173
             +  +PP QGLD  AI   P+  +K A + +         AAEC ICLGVFEDGEKVK+
Sbjct: 68  QTAPPNPPPQGLDAVAIKGLPVISHKSAPSSD--------MAAECSICLGVFEDGEKVKV 127

Query: 174 LALCHHCFHSECVDQWLRLQSSCPLCRISLR 205
           L  C HC+H ECVD+WL  Q SCPLCR SLR
Sbjct: 128 LPGCSHCYHPECVDRWLSAQPSCPLCRASLR 150

[Close]
BLAST of CmaCh04G001430 vs. TrEMBL
Match: A0A068V266_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00039150001 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 2.8e-36
Identity = 89/190 (46.84%), Postives = 113/190 (59.47%), Query Frame = 1 

Query: 19  FPPPLRFSGHRIRRRGDSSVCFDELEVVMATL----QAPPSVHWHFTELDDRIFQIRGRT 78
           FPPP     HR   R  +    +E +   A      Q  P+ HWH+++ DD  FQIRGRT
Sbjct: 64  FPPPCLRHPHR---RSKTVATKNEKKKTKALTAMSNQDSPTFHWHYSDFDDSNFQIRGRT 123

Query: 79  IFFIAVLFAVILLVTFIFLYARWVCRYHSLMTFSTAVPGVRSSRSPPQQGLDQAAINCQP 138
           +FF  VLF VIL +T I+LYARWVCR     +    +P   S   P  QGLD  AI+  P
Sbjct: 124 LFFAVVLFCVILFITLIYLYARWVCRLPPFSSRPRLLPDAPSG-PPAPQGLDLNAISNLP 183

Query: 139 ITLYKEAAAVEEAAATPAATAAECCICLGVFEDGEKVKILALCHHCFHSECVDQWLRLQS 198
           I L++        A++      EC ICLG+F+DGEKVK+L  C+H +HSEC+D+WLR QS
Sbjct: 184 IILHR--------ASSANPNEGECAICLGIFQDGEKVKVLPDCNHRYHSECIDEWLRTQS 241

Query: 199 SCPLCRISLR 205
           SCPLCR SLR
Sbjct: 244 SCPLCRASLR 241

[Close]
BLAST of CmaCh04G001430 vs. TAIR10
Match: AT3G11110.1 (AT3G11110.1 RING/U-box superfamily protein)

HSP 1 Score: 125.2 bits (313), Expect = 5.0e-29
Identity = 69/159 (43.40%), Postives = 91/159 (57.23%), Query Frame = 1 

Query: 51  QAPPSVHWHFTELDDRIFQIRGRTIFFIAVLFAVILLVTFIFLYARWVCRYHSLMTFSTA 110
           QA   ++WH  + DDR FQI GRT+FF   LF+V+L    + LY    C     +    +
Sbjct: 9   QASMLLYWHENQYDDRNFQIHGRTLFFALALFSVVLFFALLTLYIHRNCLPRDSINLHAS 68

Query: 111 VPGVRSSRSPPQQGLDQAAINCQPITLYKEAAAVEEAAATPAATAAECCICLGVFEDGEK 170
            P  R +R     GLD A I   P+ L +   A EE          ECCICLG FE+GEK
Sbjct: 69  SPD-RLTRCR-SGGLDPAEIRSLPVVLCRRERAEEEEEK-------ECCICLGGFEEGEK 128

Query: 171 VKILALCHHCFHSECVDQWLRLQSSCPLCRISLRAADNS 210
           +K+L  C HC+H ECVD+WL+ +SSCPLCR+S+R   +S
Sbjct: 129 MKVLPPCSHCYHCECVDRWLKTESSCPLCRVSIRVDSSS 158

[Close]
BLAST of CmaCh04G001430 vs. TAIR10
Match: AT3G18930.1 (AT3G18930.1 RING/U-box superfamily protein)

HSP 1 Score: 78.2 bits (191), Expect = 7.0e-15
Identity = 55/159 (34.59%), Postives = 73/159 (45.91%), Query Frame = 1 

Query: 75  IFFIAVLFAVILLVTFIFL------------YARWVCRYHSLMTFSTAVPGVRSSR---- 134
           I  + VL A  L VT+  L            + RW CR   L+  S+A     SS     
Sbjct: 43  IAMVVVLAAAFLFVTYSRLISRRFLSPLFRRFRRWRCRRRRLLHLSSASSASTSSSDLRS 102

Query: 135 ------------SPPQQGLDQAAINCQPITLYKEAAAVEEAAA--TPAATAAECCICLGV 194
                       S    GLD + I   P+ LY  AA   + A   T AA   +C +CL  
Sbjct: 103 FSPFPFDSFHYSSYSPYGLDDSVIKTLPLFLYSAAACTGKPAVGKTSAANCRDCAVCLLE 162

Query: 195 FEDGEKVKILALCHHCFHSECVDQWLRLQSSCPLCRISL 204
           FE+G+ V+ L LC H FH EC+D+WLR   +CPLCR ++
Sbjct: 163 FEEGDYVRTLPLCFHAFHLECIDEWLRSHPNCPLCRTAI 201

[Close]
BLAST of CmaCh04G001430 vs. TAIR10
Match: AT2G47560.1 (AT2G47560.1 RING/U-box superfamily protein)

HSP 1 Score: 76.6 bits (187), Expect = 2.0e-14
Identity = 43/124 (34.68%), Postives = 65/124 (52.42%), Query Frame = 1 

Query: 78  IAVLFAVILLVTFIFLYARWVCRYHSLMTFSTAVPGVRS-SRSPPQQGLDQAAINCQPIT 137
           + VLF  ++++     YARW+ R H+          +R+ S SP  Q LDQA ++  PI 
Sbjct: 33  VIVLFVAVIMILCFHSYARWLFRRHNRRIRRRIRSHLRTLSASPRDQALDQAVLDKIPIF 92

Query: 138 LYKEAAAVEEAAATPAATAAECCICLGVFEDGEKVKILALCHHCFHSECVDQWLRLQSSC 197
           +Y            P     EC +CL  FE+ ++ ++L  C H FH +C+D W R +S+C
Sbjct: 93  VYSSKNP------PPPEEKEECSVCLSEFEEEDEGRLLPKCGHSFHVDCIDTWFRSRSTC 150

Query: 198 PLCR 201
           PLCR
Sbjct: 153 PLCR 150

[Close]
BLAST of CmaCh04G001430 vs. TAIR10
Match: AT3G16720.1 (AT3G16720.1 TOXICOS EN LEVADURA 2)

HSP 1 Score: 75.9 bits (185), Expect = 3.5e-14
Identity = 46/136 (33.82%), Postives = 65/136 (47.79%), Query Frame = 1 

Query: 78  IAVLFAVILLVTFIFLYARWVC----RYH---------SLMTFSTAVPGVRSSRSPPQQG 137
           I +LF V++L+ F+ LYARW      R H         + M F TA P   ++     +G
Sbjct: 35  IVILFFVVILMVFLHLYARWYLLRARRRHLRRRSRNRRATMVFFTADPSTAATSVVASRG 94

Query: 138 LDQAAINCQPITLYKEAAAVEEAAATPAATAAECCICLGVFEDGEKVKILALCHHCFHSE 197
           LD   I   P+  + +     E    P     EC +CL  FE+ E  ++L  C H FH +
Sbjct: 95  LDPNVIKSLPVFTFSD-----ETHKDPI----ECAVCLSEFEESETGRVLPNCQHTFHVD 154

Query: 198 CVDQWLRLQSSCPLCR 201
           C+D W    S+CPLCR
Sbjct: 155 CIDMWFHSHSTCPLCR 161

[Close]
BLAST of CmaCh04G001430 vs. TAIR10
Match: AT2G17450.1 (AT2G17450.1 RING-H2 finger A3A)

HSP 1 Score: 72.8 bits (177), Expect = 2.9e-13
Identity = 35/80 (43.75%), Postives = 49/80 (61.25%), Query Frame = 1 

Query: 121 PQQGLDQAAINCQPITLYKEAAAVEEAAATPAATAAECCICLGVFEDGEKVKILALCHHC 180
           P +GL + A+   P + +  A +   AAA     + EC ICL  F DGE++++L LC H 
Sbjct: 66  PNKGLKKKALQSLPRSTFTAAESTSGAAAEEG-DSTECAICLTDFADGEEIRVLPLCGHS 125

Query: 181 FHSECVDQWLRLQSSCPLCR 201
           FH EC+D+WL  +SSCP CR
Sbjct: 126 FHVECIDKWLVSRSSCPSCR 144

[Close]
BLAST of CmaCh04G001430 vs. NCBI nr
Match: gi|659109653|ref|XP_008454808.1| (PREDICTED: RING-H2 finger protein ATL66 [Cucumis melo])

HSP 1 Score: 234.6 bits (597), Expect = 1.6e-58
Identity = 123/170 (72.35%), Postives = 134/170 (78.82%), Query Frame = 1 

Query: 47  MATLQAPPSVHWHFTELDDRIFQIRGRTIFFIAVLFAVILLVTFIFLYARWVCRYHSLMT 106
           MAT Q PPSV WHFTELDDR+FQIRGRT FF+AVLFAVILLVTFIFLYARWVCR+H L T
Sbjct: 1   MATSQVPPSVPWHFTELDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTT 60

Query: 107 FSTAVPGVRSSRSPP-QQGLDQAAINCQPITLYKEAAAVEEAAATPAATAAECCICLGVF 166
           FS ++P  R  RSPP QQGL   AIN  PITLYK  AA E+  A  A+ A EC ICLGVF
Sbjct: 61  FSASLPVRRQPRSPPQQQGLGATAINSLPITLYKAPAAEEDPPAA-ASDAGECSICLGVF 120

Query: 167 EDGEKVKILALCHHCFHSECVDQWLRLQSSCPLCRISLRAADNSNNLQMV 216
           EDGEKVKIL  C HC+HSECVD+WLR  SSCPLCR+SL   D SNNL+MV
Sbjct: 121 EDGEKVKILPPCRHCYHSECVDRWLRSHSSCPLCRVSL-CIDPSNNLEMV 168

[Close]
BLAST of CmaCh04G001430 vs. NCBI nr
Match: gi|700195498|gb|KGN50675.1| (hypothetical protein Csa_5G210015 [Cucumis sativus])

HSP 1 Score: 233.8 bits (595), Expect = 2.8e-58
Identity = 120/169 (71.01%), Postives = 129/169 (76.33%), Query Frame = 1 

Query: 47  MATLQAPPSVHWHFTELDDRIFQIRGRTIFFIAVLFAVILLVTFIFLYARWVCRYHSLMT 106
           MAT Q PPSV WHFTELDDR+FQIRGRT FF+AVLFAVILLVTFIFLYARWVCR+H L T
Sbjct: 1   MATSQVPPSVPWHFTELDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTT 60

Query: 107 FSTAVPGVRSSRSPPQQGLDQAAINCQPITLYKEAAAVEEAAATPAATAAECCICLGVFE 166
           FS  +P  R   SPPQQGL    I   PITLYK  AA E+A    A  A EC ICLGVFE
Sbjct: 61  FSAPLPVHRLPSSPPQQGLGATTIISLPITLYKPPAAKEDAPGAAANDAGECSICLGVFE 120

Query: 167 DGEKVKILALCHHCFHSECVDQWLRLQSSCPLCRISLRAADNSNNLQMV 216
           DGEKVKIL  C HC+HSECVD+WLR  SSCPLCR+SL   D SNNL+MV
Sbjct: 121 DGEKVKILPPCRHCYHSECVDRWLRSHSSCPLCRVSL-CIDPSNNLEMV 168

[Close]
BLAST of CmaCh04G001430 vs. NCBI nr
Match: gi|778708415|ref|XP_004148199.2| (PREDICTED: RING-H2 finger protein ATL66 [Cucumis sativus])

HSP 1 Score: 232.3 bits (591), Expect = 8.2e-58
Identity = 119/168 (70.83%), Postives = 128/168 (76.19%), Query Frame = 1 

Query: 47  MATLQAPPSVHWHFTELDDRIFQIRGRTIFFIAVLFAVILLVTFIFLYARWVCRYHSLMT 106
           MAT Q PPSV WHFTELDDR+FQIRGRT FF+AVLFAVILLVTFIFLYARWVCR+H L T
Sbjct: 1   MATSQVPPSVPWHFTELDDRLFQIRGRTFFFVAVLFAVILLVTFIFLYARWVCRFHQLTT 60

Query: 107 FSTAVPGVRSSRSPPQQGLDQAAINCQPITLYKEAAAVEEAAATPAATAAECCICLGVFE 166
           FS  +P  R   SPPQQGL    I   PITLYK  AA E+A    A  A EC ICLGVFE
Sbjct: 61  FSAPLPVHRLPSSPPQQGLGATTIISLPITLYKPPAAKEDAPGAAANDAGECSICLGVFE 120

Query: 167 DGEKVKILALCHHCFHSECVDQWLRLQSSCPLCRISLRAADNSNNLQM 215
           DGEKVKIL  C HC+HSECVD+WLR  SSCPLCR+SL   D SNNL+M
Sbjct: 121 DGEKVKILPPCRHCYHSECVDRWLRSHSSCPLCRVSL-CIDPSNNLEM 167

[Close]
BLAST of CmaCh04G001430 vs. NCBI nr
Match: gi|590561805|ref|XP_007008916.1| (RING/U-box superfamily protein, putative [Theobroma cacao])

HSP 1 Score: 170.2 bits (430), Expect = 3.8e-39
Identity = 89/174 (51.15%), Postives = 115/174 (66.09%), Query Frame = 1 

Query: 47  MATLQAPPSVHWHFTELDDRIFQIRGRTIFFIAVLFAVILLVTFIFLYARWVCRYHSLMT 106
           MA+ Q     HWH+ EL+DR FQIRGRT+FFI VLF+ +L+ T IF+Y+RW+C +H   +
Sbjct: 1   MASSQDSQPFHWHYAELEDRDFQIRGRTLFFIIVLFSFVLVFTLIFVYSRWICSFHRDNS 60

Query: 107 FSTAVPGVRSSRSPPQ-----QGLDQAAINCQPITLYKEAAAVEEAAATPAATAAECCIC 166
            ST  P   +S +PPQ     +GLD   IN  PIT+       + AAA   A  +ECCIC
Sbjct: 61  -STRSP---TSHAPPQPRPEPRGLDPVTINALPITMVTRGR--KSAAAAAVALESECCIC 120

Query: 167 LGVFEDGEKVKILALCHHCFHSECVDQWLRLQSSCPLCRISLRAADNSNNLQMV 216
           LGVFEDGEKVK+L  C H +HSECVD+WL  +SSCPLCR SLRA    + + ++
Sbjct: 121 LGVFEDGEKVKVLPACQHSYHSECVDRWLSAESSCPLCRASLRAESELHQIPVI 168

[Close]
BLAST of CmaCh04G001430 vs. NCBI nr
Match: gi|698500514|ref|XP_009796011.1| (PREDICTED: RING-H2 finger protein ATL66-like [Nicotiana sylvestris])

HSP 1 Score: 169.1 bits (427), Expect = 8.5e-39
Identity = 82/150 (54.67%), Postives = 103/150 (68.67%), Query Frame = 1 

Query: 55  SVHWHFTELDDRIFQIRGRTIFFIAVLFAVILLVTFIFLYARWVCRYHSLMTFSTAVPGV 114
           S HWH+ E DD  FQIRGRT+FF+ VLFA+IL+ T +FLYARWVC++ S  +   A    
Sbjct: 27  SFHWHYAEFDDNDFQIRGRTLFFVVVLFAIILIATLLFLYARWVCKFRSPSSAEAARSSH 86

Query: 115 RSSRSPPQQGLDQAAINCQPITLYKEAAAVEEAAATPAATAAECCICLGVFEDGEKVKIL 174
             S  PP QGLD A I+  PI L++ +      AA       ECCICLG+F+DG+KVK+L
Sbjct: 87  APSVPPPPQGLDPAFIDNLPIILHRSSDCRGNTAAE-----VECCICLGIFQDGDKVKVL 146

Query: 175 ALCHHCFHSECVDQWLRLQSSCPLCRISLR 205
             C HC+HSECVD+WLR QSSCPLCR S++
Sbjct: 147 PSCQHCYHSECVDKWLRNQSSCPLCRASIQ 171

The following BLAST results are available for this feature:
BLAST of CmaCh04G001430 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ATL66_ARATH8.8e-2843.40RING-H2 finger protein ATL66 OS=Arabidopsis thaliana GN=ATL66 PE=2 SV=1[more]
ATL65_ARATH1.2e-1334.59RING-H2 finger protein ATL65 OS=Arabidopsis thaliana GN=ATL65 PE=2 SV=2[more]
ATL64_ARATH3.6e-1334.68RING-H2 finger protein ATL64 OS=Arabidopsis thaliana GN=ATL64 PE=2 SV=1[more]
ATL2_ARATH6.1e-1333.82RING-H2 finger protein ATL2 OS=Arabidopsis thaliana GN=ATL2 PE=2 SV=2[more]
ATL44_ARATH5.2e-1243.75Probable E3 ubiquitin-protein ligase ATL44 OS=Arabidopsis thaliana GN=ATL44 PE=2... [more]
BLAST of CmaCh04G001430 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KLZ2_CUCSA2.0e-5871.01Uncharacterized protein OS=Cucumis sativus GN=Csa_5G210015 PE=4 SV=1[more]
A0A061FKY9_THECC2.7e-3951.15RING/U-box superfamily protein, putative OS=Theobroma cacao GN=TCM_042472 PE=4 S... [more]
A0A067FNF6_CITSI4.2e-3753.80Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031354mg PE=4 SV=1[more]
W9SF32_9ROSA1.2e-3652.98RING-H2 finger protein ATL66 OS=Morus notabilis GN=L484_000021 PE=4 SV=1[more]
A0A068V266_COFCA2.8e-3646.84Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00039150001 PE=4 SV=1[more]
BLAST of CmaCh04G001430 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G11110.15.0e-2943.40 RING/U-box superfamily protein[more]
AT3G18930.17.0e-1534.59 RING/U-box superfamily protein[more]
AT2G47560.12.0e-1434.68 RING/U-box superfamily protein[more]
AT3G16720.13.5e-1433.82 TOXICOS EN LEVADURA 2[more]
AT2G17450.12.9e-1343.75 RING-H2 finger A3A[more]
BLAST of CmaCh04G001430 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659109653|ref|XP_008454808.1|1.6e-5872.35PREDICTED: RING-H2 finger protein ATL66 [Cucumis melo][more]
gi|700195498|gb|KGN50675.1|2.8e-5871.01hypothetical protein Csa_5G210015 [Cucumis sativus][more]
gi|778708415|ref|XP_004148199.2|8.2e-5870.83PREDICTED: RING-H2 finger protein ATL66 [Cucumis sativus][more]
gi|590561805|ref|XP_007008916.1|3.8e-3951.15RING/U-box superfamily protein, putative [Theobroma cacao][more]
gi|698500514|ref|XP_009796011.1|8.5e-3954.67PREDICTED: RING-H2 finger protein ATL66-like [Nicotiana sylvestris][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G001430.1CmaCh04G001430.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 157..200
score: 1.2
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 158..199
score: 6.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 158..200
score: 11
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 155..202
score: 1.6
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 70..214
score: 1.4
NoneNo IPR availablePANTHERPTHR14155:SF100RING-H2 FINGER PROTEIN ATL66coord: 70..214
score: 1.4
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 131..205
score: 2.22

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh04G001430Cucsa.368380Cucumber (Gy14) v1cgycmaB1024
CmaCh04G001430Cla004365Watermelon (97103) v1cmawmB691
CmaCh04G001430MELO3C018366Melon (DHL92) v3.5.1cmameB644
CmaCh04G001430ClCG07G004370Watermelon (Charleston Gray)cmawcgB674
CmaCh04G001430CSPI05G10840Wild cucumber (PI 183967)cmacpiB757
CmaCh04G001430CmoCh04G001390Cucurbita moschata (Rifu)cmacmoB728
CmaCh04G001430Lsi04G010850Bottle gourd (USVL1VR-Ls)cmalsiB671
CmaCh04G001430MELO3C018366.2Melon (DHL92) v3.6.1cmamedB728
CmaCh04G001430CsaV3_5G010310Cucumber (Chinese Long) v3cmacucB0883
CmaCh04G001430Cla97C07G132830Watermelon (97103) v2cmawmbB781
CmaCh04G001430Bhi07G000489Wax gourdcmawgoB0890
CmaCh04G001430CsGy5G008170Cucumber (Gy14) v2cgybcmaB674
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh04G001430Cucumber (Chinese Long) v3cmacucB0821
CmaCh04G001430Cucumber (Chinese Long) v3cmacucB0913
CmaCh04G001430Watermelon (97103) v2cmawmbB729
CmaCh04G001430Watermelon (97103) v2cmawmbB748
CmaCh04G001430Wax gourdcmawgoB0865
CmaCh04G001430Wax gourdcmawgoB0886
CmaCh04G001430Cucurbita maxima (Rimu)cmacmaB236
CmaCh04G001430Cucurbita maxima (Rimu)cmacmaB274
CmaCh04G001430Cucurbita maxima (Rimu)cmacmaB488
CmaCh04G001430Cucurbita maxima (Rimu)cmacmaB531
CmaCh04G001430Cucurbita maxima (Rimu)cmacmaB534
CmaCh04G001430Cucurbita maxima (Rimu)cmacmaB543
CmaCh04G001430Cucumber (Gy14) v1cgycmaB0376
CmaCh04G001430Cucurbita moschata (Rifu)cmacmoB683
CmaCh04G001430Cucurbita moschata (Rifu)cmacmoB721
CmaCh04G001430Cucurbita moschata (Rifu)cmacmoB730
CmaCh04G001430Cucurbita moschata (Rifu)cmacmoB736
CmaCh04G001430Cucurbita moschata (Rifu)cmacmoB751
CmaCh04G001430Wild cucumber (PI 183967)cmacpiB697
CmaCh04G001430Wild cucumber (PI 183967)cmacpiB708
CmaCh04G001430Wild cucumber (PI 183967)cmacpiB784
CmaCh04G001430Cucumber (Chinese Long) v2cmacuB688
CmaCh04G001430Cucumber (Chinese Long) v2cmacuB747
CmaCh04G001430Cucumber (Chinese Long) v2cmacuB774
CmaCh04G001430Melon (DHL92) v3.5.1cmameB666
CmaCh04G001430Melon (DHL92) v3.5.1cmameB683
CmaCh04G001430Melon (DHL92) v3.5.1cmameB688
CmaCh04G001430Watermelon (Charleston Gray)cmawcgB617
CmaCh04G001430Watermelon (Charleston Gray)cmawcgB625
CmaCh04G001430Watermelon (97103) v1cmawmB663
CmaCh04G001430Watermelon (97103) v1cmawmB675
CmaCh04G001430Watermelon (97103) v1cmawmB742
CmaCh04G001430Cucurbita pepo (Zucchini)cmacpeB720
CmaCh04G001430Cucurbita pepo (Zucchini)cmacpeB722
CmaCh04G001430Cucurbita pepo (Zucchini)cmacpeB742
CmaCh04G001430Cucurbita pepo (Zucchini)cmacpeB746
CmaCh04G001430Cucurbita pepo (Zucchini)cmacpeB758
CmaCh04G001430Cucurbita pepo (Zucchini)cmacpeB753
CmaCh04G001430Bottle gourd (USVL1VR-Ls)cmalsiB632
CmaCh04G001430Bottle gourd (USVL1VR-Ls)cmalsiB650
CmaCh04G001430Bottle gourd (USVL1VR-Ls)cmalsiB660
CmaCh04G001430Cucumber (Gy14) v2cgybcmaB133
CmaCh04G001430Cucumber (Gy14) v2cgybcmaB842
CmaCh04G001430Melon (DHL92) v3.6.1cmamedB751
CmaCh04G001430Melon (DHL92) v3.6.1cmamedB767
CmaCh04G001430Melon (DHL92) v3.6.1cmamedB774
CmaCh04G001430Silver-seed gourdcarcmaB0115
CmaCh04G001430Silver-seed gourdcarcmaB0214
CmaCh04G001430Silver-seed gourdcarcmaB0480
CmaCh04G001430Silver-seed gourdcarcmaB0949
CmaCh04G001430Silver-seed gourdcarcmaB1385