CmoCh04G000020 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G000020
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionNADH-ubiquinone oxidoreductase B18 subunit, putative
LocationCmo_Chr04 : 5855 .. 9068 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGTCTCGGGCTCCTCGAAGAAGATGATAGCGACGCAGGCTGAGATGGTCGAGGCTAGGGTTCCAATCCCTTACCGAGACCAGTGCGCTCACTTGTTGATCCCTCTTAATGTCGCCAATCAGAGTTCTACCTCCCATGGAAATGCGAAAACGAGCGCCATTCCTACGAGAAGTGTGAATATGAGCTCGTTATGGAGAGTACGAAACAGTCCGAGATTTGAGAAAAAGGAAGAACATGTCCTGTTTCATAAAATAAATAAGATAAAGAGGATCATTATTTCCCAAACTTGGGCACTACCAAGGAAACCAGTTATTTCCTAAGCTTGGGCTCTGGAAGCATAAGCTCTTATTGGGTGTCAAAACGGTACTAAAATTGGCCAAGTTGTTTTGAAAACAATTGGATATATCATAAATCTTTCTTTGAAAGACTAAGGACCTATGGTGGGGCATTTTGCAATGACTTGTGCACTATAAAATGAACTTACTCGATTGACTACTTGATAAAGGTCCATTCATCATTTCTTCTGGTCAGCTCAAGACTCTCAAAATTCACCACGAGCTTTATTTGTGAGAGGGACTGATCTTTTGTACCAATTTCTTAAGTTCTAATAGTAGTACCTTTTGTAAGGTTGGGCTACTGGAAGTTCTGTTAGACTCTTAGGATAGTAAAAGGAAATTATGAATGATCCACCCCAAAATGATTATATATTTTCCTCTTCTACCGTTTTAGAGTATGAATCTTTCATGGAAAGTGGGTTATCCTAGTTGCAAAAGATGCTTAAAAGTTACAACCTACAAGGATCTATTTTTCAGTGAACAAAGGATTATTTTCACTTATCATACTGGCCATAAAAGTTTTGTCGTTGTTTAATCTATGCTCTCAGTGCTCATTTTTGTTCAGTTAGAAAAAGAATTCCTCCCTCAGATGGCTCAAAGAATGCTTGGTATATCAAATACGAAAGGTTAGTTGACTTTTCTATTTGTTCGGTGTTCACTGCTTGCATTGTAGTACATCTTCAAAAACTCTTCCCAAATCTGCATCTTTGAACCCAAGCCCAAAGCCTCAAGATAAAACTCTCCTACCTCGAATTTATATAGAGTAATTTATTACAAAAAAAGAATAACAATTGAACTCTCTTTCTAAAGTAACCAGAAAGGAACAATTTTTTTTTTTTTTTTTTTTTGCAACAATCCTTAGATACAGCATTAAACCACCTTGTATTCCTTTCCAACCATATGTTTCTTTAGAAAGTTTTTAAAGCATTAGCCGAAGGCTATCAAAGTGAGTATGGCTCAATAATAATTGACATGTACTCTTGTTCAACGAAATCGTAAAAAGGCCTTCAGTTAATTTTTTAAAAAAGTTTAACAACATTTTCAAGGTGCACTCAAGTGATTGCATATGGTGAGAGATGATATGAGACACTTATCAATTTCTTGAGTGATATCCTAAGTGAGTGTGCTTAATACCTTTCACCCACGAGAGGAGAAGATCAGTCAAATAAAGAAGAGCGGTAAGGGGTGGAGGAGGAAGAGGCAAAAGGCAAAAGGCTCTTTCTTACATTTCCTAGAAGCACTACTGAAGTGCTCACTCACGGCTCCTATAAAAAAAAAAAAAAAAAAAAAAAAGTGCTAATTGCATGTTAGTCAACAAATGGCTGAATTTCTTCCCCAATAAATGTAAGTGTTTTTATTTATAACTTTATTGAGATGGTTGCTTGAGGCACAAGACTAGGTGTGGTTTTTATGCAAAACTAGATGTGGAAGAGAATTAGAAGCAACGATGTTTGGATGGCTTTCCATGGGCTGAGATAACTAGGTTTCATGGGTCTTCTGAGTATATTTTTTAAAAAATAAACATAAAAGACAGAATTAAACTGATAGGGTTCTTTTAGGTGAGTGCCTAATTGGAGGTGCTTGCCCAGCCTAATGTTGATGCGCAAAGGTTCTCGGTGCGCAGGCTCCAAGATGTTGTGTAATCATTTCTATACTATTTGATGCAATGACCACTGTTCTCACTCATAGGTAGTTTTATATAAAGAGCTGCCCCTAGAAAGGGAAAAATAGGAAAAGAGATCATTGCTTACGTTAATAGTCCAACGCACAAGTAGCTTCCTCATTCCATATGAATGCATCTTTCTTCAACCCCTAAGTGAGGGGAACAATTTTCCATATTTAGTGGGAAGTCGTTGGTAGAATCTTATCAATCCAAAGTACGTCCTAACACCTTCGATGATTTCAATGTAAGCTACTGTAGCATTCCTTGGATTTTGGTTGGATCCACTTCAACTCGCACTCCACCTTTGGCTGAGGGAATTGACACTTCTTGAGGTTTACATAAGCTCCCTTACCTTCAAAATTGAGAAAAGGGCTTCCAATTGTAATCCTTGAGAATCTAGATCAACATTGTGGATAAGGATTGTTTAATCAATGCAAACATGCCAACTACCATTTTTTTATTAACCAGGAGGATCAGAATGGGGTTGGTGTTGGGTTCTTGCTGTTGGGGATGTGTGTGGAGGGAGTAGGTGATGAAGGAGTCTTGCGAGGGTGGGTTTGGGATTGGAATTACATTGAAGAAGACTTGGAAGTTGATCTTTCCACTTTATTGCATAATGTCGAGTTACTTGTTGATTGTTTCACCTAAATCTGACAGGATATCATAAATTACTGACATGTCAAGGTTCGCTATTTCCTGGTGCCAGCAATAGGAAGGTATTTGAAAACGTAAACGACTTTTAAATCTGTTGGGCATATCCCTTATTCAGCATTTAGAATAAAGTTATTCACATATCCCTTATTCAGCATTTAGAATAAAGTTATTCAGCATCTGAATGTTGTTGATGTGTACTGATATCAATGGTTTCATAACTTTTCAGATACAATTTTTCCAAGTTCAAGTTTGAAAAGAAATTAAGAGAGTCGTAACTAATCGAGTTTTATGCTCCTCAGGAATTGGATTTGAATTTAGGTCTGTGAAGGGATGTCTTTGATGGGGTTGGTTTTCTGTATCTAGAAAAAAGATGACGAGTTCTCTGCTGTATTTTAAGTTCAAAGTGTTCCTTTTGATTTATGAATTTAAACCACATTATCGTTTCCTTCCACCAAATTTCAAATACTCAAAAAATTGACATATAAGAATTGGATGCTTGGAACTGCAATTAAAACTATTGATATATTTTATATAGGGTTGTATGAATTTGAAATCTAA

mRNA sequence

ATGGAAGTCTCGGGCTCCTCGAAGAAGATGATAGCGACGCAGGCTGAGATGGTCGAGGCTAGGGTTCCAATCCCTTACCGAGACCAGTGCGCTCACTTGTTGATCCCTCTTAATGTCGCCAATCAGAGTTCTACCTCCCATGGAAATGCGAAAACGAGCGCCATTCCTACGAGAAGGTTGTATGAATTTGAAATCTAA

Coding sequence (CDS)

ATGGAAGTCTCGGGCTCCTCGAAGAAGATGATAGCGACGCAGGCTGAGATGGTCGAGGCTAGGGTTCCAATCCCTTACCGAGACCAGTGCGCTCACTTGTTGATCCCTCTTAATGTCGCCAATCAGAGTTCTACCTCCCATGGAAATGCGAAAACGAGCGCCATTCCTACGAGAAGGTTGTATGAATTTGAAATCTAA
Homology
[Close]
BLAST of CmoCh04G000020 vs. Swiss-Prot
Match: NDUB7_ARATH (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 OS=Arabidopsis thaliana GN=At2g02050 PE=3 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.2e-07
Identity = 28/43 (65.12%), Postives = 32/43 (74.42%), Query Frame = 1 

Query: 1  MEVSGSSKKMIATQAEMVEARVPIPYRDQCAHLLIPLNVANQS 44
          MEV GSSKKMIATQ EM  A++ +  RD CAHLLIPLN   Q+
Sbjct: 1  MEVPGSSKKMIATQEEMSAAKIALGSRDMCAHLLIPLNKCRQA 43

[Close]
BLAST of CmoCh04G000020 vs. TrEMBL
Match: A0A0A0KMK8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G277970 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 2.4e-12
Identity = 39/43 (90.70%), Postives = 39/43 (90.70%), Query Frame = 1 

Query: 1  MEVSGSSKKMIATQAEMVEARVPIPYRDQCAHLLIPLNVANQS 44
          MEV GSSKKMIATQAEMVEARVPIPYRDQCAHLLIPLN   QS
Sbjct: 1  MEVQGSSKKMIATQAEMVEARVPIPYRDQCAHLLIPLNKCRQS 43

[Close]
BLAST of CmoCh04G000020 vs. TrEMBL
Match: A0A067EXL1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034138mg PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.7e-11
Identity = 37/43 (86.05%), Postives = 38/43 (88.37%), Query Frame = 1 

Query: 1  MEVSGSSKKMIATQAEMVEARVPIPYRDQCAHLLIPLNVANQS 44
          MEV GSSKKMIATQ EMVEARVPIPYRDQCAHLLIPLN   Q+
Sbjct: 1  MEVPGSSKKMIATQEEMVEARVPIPYRDQCAHLLIPLNKCRQA 43

[Close]
BLAST of CmoCh04G000020 vs. TrEMBL
Match: V4UAW1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017277mg PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.7e-11
Identity = 37/43 (86.05%), Postives = 38/43 (88.37%), Query Frame = 1 

Query: 1  MEVSGSSKKMIATQAEMVEARVPIPYRDQCAHLLIPLNVANQS 44
          MEV GSSKKMIATQ EMVEARVPIPYRDQCAHLLIPLN   Q+
Sbjct: 1  MEVPGSSKKMIATQEEMVEARVPIPYRDQCAHLLIPLNKCRQA 43

[Close]
BLAST of CmoCh04G000020 vs. TrEMBL
Match: A0A068UCN2_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00020437001 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 6.0e-11
Identity = 36/43 (83.72%), Postives = 38/43 (88.37%), Query Frame = 1 

Query: 1  MEVSGSSKKMIATQAEMVEARVPIPYRDQCAHLLIPLNVANQS 44
          MEV GSSKKMIATQ EMVEA+VPIPYRDQCAHLLIPLN   Q+
Sbjct: 1  MEVPGSSKKMIATQEEMVEAKVPIPYRDQCAHLLIPLNKCRQA 43

[Close]
BLAST of CmoCh04G000020 vs. TrEMBL
Match: A0A067KTF2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04846 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 6.0e-11
Identity = 36/43 (83.72%), Postives = 38/43 (88.37%), Query Frame = 1 

Query: 1  MEVSGSSKKMIATQAEMVEARVPIPYRDQCAHLLIPLNVANQS 44
          MEV GSSK MIATQAEMVEA+VPIPYRDQCAHLLIPLN   Q+
Sbjct: 1  MEVQGSSKPMIATQAEMVEAKVPIPYRDQCAHLLIPLNKCRQA 43

[Close]
BLAST of CmoCh04G000020 vs. TAIR10
Match: AT2G02050.1 (AT2G02050.1 NADH-ubiquinone oxidoreductase B18 subunit, putative)

HSP 1 Score: 56.6 bits (135), Expect = 6.6e-09
Identity = 28/43 (65.12%), Postives = 32/43 (74.42%), Query Frame = 1 

Query: 1  MEVSGSSKKMIATQAEMVEARVPIPYRDQCAHLLIPLNVANQS 44
          MEV GSSKKMIATQ EM  A++ +  RD CAHLLIPLN   Q+
Sbjct: 1  MEVPGSSKKMIATQEEMSAAKIALGSRDMCAHLLIPLNKCRQA 43

[Close]
BLAST of CmoCh04G000020 vs. NCBI nr
Match: gi|449445264|ref|XP_004140393.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 79.0 bits (193), Expect = 3.5e-12
Identity = 39/43 (90.70%), Postives = 39/43 (90.70%), Query Frame = 1 

Query: 1  MEVSGSSKKMIATQAEMVEARVPIPYRDQCAHLLIPLNVANQS 44
          MEV GSSKKMIATQAEMVEARVPIPYRDQCAHLLIPLN   QS
Sbjct: 1  MEVQGSSKKMIATQAEMVEARVPIPYRDQCAHLLIPLNKCRQS 43

[Close]
BLAST of CmoCh04G000020 vs. NCBI nr
Match: gi|659120462|ref|XP_008460206.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 77.0 bits (188), Expect = 1.3e-11
Identity = 38/43 (88.37%), Postives = 38/43 (88.37%), Query Frame = 1 

Query: 1  MEVSGSSKKMIATQAEMVEARVPIPYRDQCAHLLIPLNVANQS 44
          ME  GSSKKMIATQAEMVEARVPIPYRDQCAHLLIPLN   QS
Sbjct: 1  MEFQGSSKKMIATQAEMVEARVPIPYRDQCAHLLIPLNKCRQS 43

[Close]
BLAST of CmoCh04G000020 vs. NCBI nr
Match: gi|567911451|ref|XP_006448039.1| (hypothetical protein CICLE_v10017277mg [Citrus clementina])

HSP 1 Score: 75.5 bits (184), Expect = 3.9e-11
Identity = 37/43 (86.05%), Postives = 38/43 (88.37%), Query Frame = 1 

Query: 1  MEVSGSSKKMIATQAEMVEARVPIPYRDQCAHLLIPLNVANQS 44
          MEV GSSKKMIATQ EMVEARVPIPYRDQCAHLLIPLN   Q+
Sbjct: 1  MEVPGSSKKMIATQEEMVEARVPIPYRDQCAHLLIPLNKCRQA 43

[Close]
BLAST of CmoCh04G000020 vs. NCBI nr
Match: gi|802597738|ref|XP_012072408.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 74.3 bits (181), Expect = 8.6e-11
Identity = 36/43 (83.72%), Postives = 38/43 (88.37%), Query Frame = 1 

Query: 1  MEVSGSSKKMIATQAEMVEARVPIPYRDQCAHLLIPLNVANQS 44
          MEV GSSK MIATQAEMVEA+VPIPYRDQCAHLLIPLN   Q+
Sbjct: 1  MEVQGSSKPMIATQAEMVEAKVPIPYRDQCAHLLIPLNKCRQA 43

[Close]
BLAST of CmoCh04G000020 vs. NCBI nr
Match: gi|823158129|ref|XP_012478939.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 74.3 bits (181), Expect = 8.6e-11
Identity = 36/43 (83.72%), Postives = 38/43 (88.37%), Query Frame = 1 

Query: 1  MEVSGSSKKMIATQAEMVEARVPIPYRDQCAHLLIPLNVANQS 44
          MEV GSSKKMIATQAEMVE +VPIPYRDQCAHLLIPLN   Q+
Sbjct: 1  MEVEGSSKKMIATQAEMVENKVPIPYRDQCAHLLIPLNKCRQA 43

The following BLAST results are available for this feature:
BLAST of CmoCh04G000020 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NDUB7_ARATH1.2e-0765.12NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 OS=Arabidopsis thali... [more]
BLAST of CmoCh04G000020 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KMK8_CUCSA2.4e-1290.70Uncharacterized protein OS=Cucumis sativus GN=Csa_5G277970 PE=4 SV=1[more]
A0A067EXL1_CITSI2.7e-1186.05Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034138mg PE=4 SV=1[more]
V4UAW1_9ROSI2.7e-1186.05Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017277mg PE=4 SV=1[more]
A0A068UCN2_COFCA6.0e-1183.72Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00020437001 PE=4 SV=1[more]
A0A067KTF2_JATCU6.0e-1183.72Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04846 PE=4 SV=1[more]
BLAST of CmoCh04G000020 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G02050.16.6e-0965.12 NADH-ubiquinone oxidoreductase B18 subunit, putative[more]
BLAST of CmoCh04G000020 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449445264|ref|XP_004140393.1|3.5e-1290.70PREDICTED: NADH dehydrogenase [ubiquinone][more]
gi|659120462|ref|XP_008460206.1|1.3e-1188.37PREDICTED: NADH dehydrogenase [ubiquinone][more]
gi|567911451|ref|XP_006448039.1|3.9e-1186.05hypothetical protein CICLE_v10017277mg [Citrus clementina][more]
gi|802597738|ref|XP_012072408.1|8.6e-1183.72PREDICTED: NADH dehydrogenase [ubiquinone][more]
gi|823158129|ref|XP_012478939.1|8.6e-1183.72PREDICTED: NADH dehydrogenase [ubiquinone][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008698NADH_UbQ_OxRdtase_B18_su
Vocabulary: Molecular Function
TermDefinition
GO:0003954NADH dehydrogenase activity
GO:0008137NADH dehydrogenase (ubiquinone) activity
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006120 mitochondrial electron transport, NADH to ubiquinone
biological_process GO:0015992 proton transport
biological_process GO:0006814 sodium ion transport
biological_process GO:0006744 ubiquinone biosynthetic process
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0005747 mitochondrial respiratory chain complex I
cellular_component GO:0005739 mitochondrion
molecular_function GO:0008137 NADH dehydrogenase (ubiquinone) activity
molecular_function GO:0003954 NADH dehydrogenase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G000020.1CmoCh04G000020.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008698NADH:ubiquinone oxidoreductase, B18 subunitPANTHERPTHR20900NADH:UBIQUINONE OXIDOREDUCTASE B18-LIKE SUBUNITcoord: 1..38
score: 1.4
IPR008698NADH:ubiquinone oxidoreductase, B18 subunitPFAMPF05676NDUF_B7coord: 11..39
score: 8.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh04G000020CmaCh04G000010Cucurbita maxima (Rimu)cmacmoB728
CmoCh04G000020Cla016936Watermelon (97103) v1cmowmB736
CmoCh04G000020ClCG11G000640Watermelon (Charleston Gray)cmowcgB627
CmoCh04G000020Cla97C11G206950Watermelon (97103) v2cmowmbB703
CmoCh04G000020CsGy5G009200Cucumber (Gy14) v2cgybcmoB641
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None