CmaCh04G000010 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh04G000010
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionNADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7
LocationCma_Chr04 : 4846 .. 5136 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGTGTCGGGCTCCTCGAAGAAGATGATAGCGACGCAGGCTGAGATGGTCGAGGCTAGGGCTCCAATCCCTTACCGAGACCTGTGCGCTCACTTGTTGATCCTTCTTAATAAGTGTCGCCAATCAGAGTTCTACCTCCCATGGAAATGCGAAAACGAGCGCCATTCCTACGAGAAGTGTGAATATGAGCTCGTTATGGAGAGGATATTTCAGATGCTGAAGATCCGTGAGGAGGAGGCCAACTTGAAGAAGGGGATTAATCTCATTCCCAAAACTGCCAATGTATGA

mRNA sequence

ATGGAAGTGTCGGGCTCCTCGAAGAAGATGATAGCGACGCAGGCTGAGATGGTCGAGGCTAGGGCTCCAATCCCTTACCGAGACCTGTGCGCTCACTTGTTGATCCTTCTTAATAAGTGTCGCCAATCAGAGTTCTACCTCCCATGGAAATGCGAAAACGAGCGCCATTCCTACGAGAAGTGTGAATATGAGCTCGTTATGGAGAGGATATTTCAGATGCTGAAGATCCGTGAGGAGGAGGCCAACTTGAAGAAGGGGATTAATCTCATTCCCAAAACTGCCAATGTATGA

Coding sequence (CDS)

ATGGAAGTGTCGGGCTCCTCGAAGAAGATGATAGCGACGCAGGCTGAGATGGTCGAGGCTAGGGCTCCAATCCCTTACCGAGACCTGTGCGCTCACTTGTTGATCCTTCTTAATAAGTGTCGCCAATCAGAGTTCTACCTCCCATGGAAATGCGAAAACGAGCGCCATTCCTACGAGAAGTGTGAATATGAGCTCGTTATGGAGAGGATATTTCAGATGCTGAAGATCCGTGAGGAGGAGGCCAACTTGAAGAAGGGGATTAATCTCATTCCCAAAACTGCCAATGTATGA

Protein sequence

MEVSGSSKKMIATQAEMVEARAPIPYRDLCAHLLILLNKCRQSEFYLPWKCENERHSYEKCEYELVMERIFQMLKIREEEANLKKGINLIPKTANV
Homology
[Close]
BLAST of CmaCh04G000010 vs. Swiss-Prot
Match: NDUB7_ARATH (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 OS=Arabidopsis thaliana GN=At2g02050 PE=3 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 6.5e-31
Identity = 70/102 (68.63%), Postives = 78/102 (76.47%), Query Frame = 1 

Query: 1   MEVSGSSKKMIATQAEMVEARAPIPYRDLCAHLLILLNKCRQSEFYLPWKCENERHSYEK 60
           MEV GSSKKMIATQ EM  A+  +  RD+CAHLLI LNKCRQ+EFYLPWKCE+ERH YEK
Sbjct: 1   MEVPGSSKKMIATQEEMSAAKIALGSRDMCAHLLIPLNKCRQAEFYLPWKCEDERHVYEK 60

Query: 61  CEYELVMERIFQMLKIREEEANLKK-------GINLIPKTAN 96
           CEYELVMER+  M KIREEEA  K+        + LIPKTAN
Sbjct: 61  CEYELVMERMLAMKKIREEEALAKQNKLQGNAAVPLIPKTAN 102

[Close]
BLAST of CmaCh04G000010 vs. Swiss-Prot
Match: NDUB7_DICDI (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 OS=Dictyostelium discoideum GN=ndufb7 PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 4.2e-14
Identity = 35/74 (47.30%), Postives = 52/74 (70.27%), Query Frame = 1 

Query: 7  SKKMIATQAEMVEARAPIPYRDLCAHLLILLNKCRQSEFYLPWKCENERHSYEKCEYELV 66
          S+KMIATQ +  +   P+ +RD CAHLLI LN CR S +Y PWKC +E+H+YE C+Y+  
Sbjct: 15 SRKMIATQQQCEDKNLPLSFRDYCAHLLIPLNDCRVSTYYAPWKCMDEKHAYEGCQYD-- 74

Query: 67 MERIFQMLKIREEE 81
           E +++ +K  E++
Sbjct: 75 -EYLYRKIKKSEQD 85

[Close]
BLAST of CmaCh04G000010 vs. TrEMBL
Match: A0A0A0KMK8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G277970 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 1.1e-40
Identity = 85/96 (88.54%), Postives = 89/96 (92.71%), Query Frame = 1 

Query: 1  MEVSGSSKKMIATQAEMVEARAPIPYRDLCAHLLILLNKCRQSEFYLPWKCENERHSYEK 60
          MEV GSSKKMIATQAEMVEAR PIPYRD CAHLLI LNKCRQSEFYLPWKCE+ERHSYEK
Sbjct: 1  MEVQGSSKKMIATQAEMVEARVPIPYRDQCAHLLIPLNKCRQSEFYLPWKCEDERHSYEK 60

Query: 61 CEYELVMERIFQMLKIREEEANLKKGINLIPKTANV 97
          CEYELVMER+ QM KIREE+A LKKGI+LIPKTANV
Sbjct: 61 CEYELVMERMLQMQKIREEQAKLKKGIHLIPKTANV 96

[Close]
BLAST of CmaCh04G000010 vs. TrEMBL
Match: A0A067EXL1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034138mg PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 1.6e-36
Identity = 82/102 (80.39%), Postives = 85/102 (83.33%), Query Frame = 1 

Query: 1   MEVSGSSKKMIATQAEMVEARAPIPYRDLCAHLLILLNKCRQSEFYLPWKCENERHSYEK 60
           MEV GSSKKMIATQ EMVEAR PIPYRD CAHLLI LNKCRQ+EFYLPWKCENERHSYEK
Sbjct: 1   MEVPGSSKKMIATQEEMVEARVPIPYRDQCAHLLIPLNKCRQAEFYLPWKCENERHSYEK 60

Query: 61  CEYELVMERIFQMLKIREEEANLKKG-------INLIPKTAN 96
           CEYELVMER+ QM KIREEEA LK+        I LIPKTAN
Sbjct: 61  CEYELVMERMLQMQKIREEEAKLKQSQTQKGAPIPLIPKTAN 102

[Close]
BLAST of CmaCh04G000010 vs. TrEMBL
Match: V4UAW1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017277mg PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 1.6e-36
Identity = 82/102 (80.39%), Postives = 85/102 (83.33%), Query Frame = 1 

Query: 1   MEVSGSSKKMIATQAEMVEARAPIPYRDLCAHLLILLNKCRQSEFYLPWKCENERHSYEK 60
           MEV GSSKKMIATQ EMVEAR PIPYRD CAHLLI LNKCRQ+EFYLPWKCENERHSYEK
Sbjct: 1   MEVPGSSKKMIATQEEMVEARVPIPYRDQCAHLLIPLNKCRQAEFYLPWKCENERHSYEK 60

Query: 61  CEYELVMERIFQMLKIREEEANLKKG-------INLIPKTAN 96
           CEYELVMER+ QM KIREEEA LK+        I LIPKTAN
Sbjct: 61  CEYELVMERMLQMQKIREEEAKLKQSQTQKGAPIPLIPKTAN 102

[Close]
BLAST of CmaCh04G000010 vs. TrEMBL
Match: A0A067KTF2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04846 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 6.1e-36
Identity = 80/101 (79.21%), Postives = 85/101 (84.16%), Query Frame = 1 

Query: 1   MEVSGSSKKMIATQAEMVEARAPIPYRDLCAHLLILLNKCRQSEFYLPWKCENERHSYEK 60
           MEV GSSK MIATQAEMVEA+ PIPYRD CAHLLI LNKCRQ+EFYLPWKCENERHSYEK
Sbjct: 1   MEVQGSSKPMIATQAEMVEAKVPIPYRDQCAHLLIPLNKCRQAEFYLPWKCENERHSYEK 60

Query: 61  CEYELVMERIFQMLKIREEEANLKK------GINLIPKTAN 96
           CEYEL+MER+ QM KIREEEA LK+       I LIPKTAN
Sbjct: 61  CEYELLMERMLQMQKIREEEAKLKQAQKQGGSIPLIPKTAN 101

[Close]
BLAST of CmaCh04G000010 vs. TrEMBL
Match: A0A0D2NDD0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G154900 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 4.0e-35
Identity = 79/101 (78.22%), Postives = 84/101 (83.17%), Query Frame = 1 

Query: 1   MEVSGSSKKMIATQAEMVEARAPIPYRDLCAHLLILLNKCRQSEFYLPWKCENERHSYEK 60
           MEV GSSKKMIATQAEMVE + PIPYRD CAHLLI LNKCRQ+EFYLPWKCE ERHSYEK
Sbjct: 1   MEVEGSSKKMIATQAEMVENKVPIPYRDQCAHLLIPLNKCRQAEFYLPWKCEIERHSYEK 60

Query: 61  CEYELVMERIFQMLKIREEEANLKK------GINLIPKTAN 96
           CEYELVMER+ QM KIREEEA LK+       + LIPKTAN
Sbjct: 61  CEYELVMERMLQMQKIREEEAKLKQAGKQGVSVPLIPKTAN 101

[Close]
BLAST of CmaCh04G000010 vs. TAIR10
Match: AT2G02050.1 (AT2G02050.1 NADH-ubiquinone oxidoreductase B18 subunit, putative)

HSP 1 Score: 134.4 bits (337), Expect = 3.7e-32
Identity = 70/102 (68.63%), Postives = 78/102 (76.47%), Query Frame = 1 

Query: 1   MEVSGSSKKMIATQAEMVEARAPIPYRDLCAHLLILLNKCRQSEFYLPWKCENERHSYEK 60
           MEV GSSKKMIATQ EM  A+  +  RD+CAHLLI LNKCRQ+EFYLPWKCE+ERH YEK
Sbjct: 1   MEVPGSSKKMIATQEEMSAAKIALGSRDMCAHLLIPLNKCRQAEFYLPWKCEDERHVYEK 60

Query: 61  CEYELVMERIFQMLKIREEEANLKK-------GINLIPKTAN 96
           CEYELVMER+  M KIREEEA  K+        + LIPKTAN
Sbjct: 61  CEYELVMERMLAMKKIREEEALAKQNKLQGNAAVPLIPKTAN 102

[Close]
BLAST of CmaCh04G000010 vs. NCBI nr
Match: gi|449445264|ref|XP_004140393.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 173.7 bits (439), Expect = 1.5e-40
Identity = 85/96 (88.54%), Postives = 89/96 (92.71%), Query Frame = 1 

Query: 1  MEVSGSSKKMIATQAEMVEARAPIPYRDLCAHLLILLNKCRQSEFYLPWKCENERHSYEK 60
          MEV GSSKKMIATQAEMVEAR PIPYRD CAHLLI LNKCRQSEFYLPWKCE+ERHSYEK
Sbjct: 1  MEVQGSSKKMIATQAEMVEARVPIPYRDQCAHLLIPLNKCRQSEFYLPWKCEDERHSYEK 60

Query: 61 CEYELVMERIFQMLKIREEEANLKKGINLIPKTANV 97
          CEYELVMER+ QM KIREE+A LKKGI+LIPKTANV
Sbjct: 61 CEYELVMERMLQMQKIREEQAKLKKGIHLIPKTANV 96

[Close]
BLAST of CmaCh04G000010 vs. NCBI nr
Match: gi|659120462|ref|XP_008460206.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 167.9 bits (424), Expect = 8.5e-39
Identity = 82/96 (85.42%), Postives = 87/96 (90.62%), Query Frame = 1 

Query: 1  MEVSGSSKKMIATQAEMVEARAPIPYRDLCAHLLILLNKCRQSEFYLPWKCENERHSYEK 60
          ME  GSSKKMIATQAEMVEAR PIPYRD CAHLLI LNKCRQSEFYLPWKCE+ERHSYEK
Sbjct: 1  MEFQGSSKKMIATQAEMVEARVPIPYRDQCAHLLIPLNKCRQSEFYLPWKCEDERHSYEK 60

Query: 61 CEYELVMERIFQMLKIREEEANLKKGINLIPKTANV 97
          CEYELVMER+ QM KIREE+A LK+GI+LIPK ANV
Sbjct: 61 CEYELVMERMLQMQKIREEQAKLKEGIHLIPKPANV 96

[Close]
BLAST of CmaCh04G000010 vs. NCBI nr
Match: gi|567911451|ref|XP_006448039.1| (hypothetical protein CICLE_v10017277mg [Citrus clementina])

HSP 1 Score: 159.8 bits (403), Expect = 2.3e-36
Identity = 82/102 (80.39%), Postives = 85/102 (83.33%), Query Frame = 1 

Query: 1   MEVSGSSKKMIATQAEMVEARAPIPYRDLCAHLLILLNKCRQSEFYLPWKCENERHSYEK 60
           MEV GSSKKMIATQ EMVEAR PIPYRD CAHLLI LNKCRQ+EFYLPWKCENERHSYEK
Sbjct: 1   MEVPGSSKKMIATQEEMVEARVPIPYRDQCAHLLIPLNKCRQAEFYLPWKCENERHSYEK 60

Query: 61  CEYELVMERIFQMLKIREEEANLKKG-------INLIPKTAN 96
           CEYELVMER+ QM KIREEEA LK+        I LIPKTAN
Sbjct: 61  CEYELVMERMLQMQKIREEEAKLKQSQTQKGAPIPLIPKTAN 102

[Close]
BLAST of CmaCh04G000010 vs. NCBI nr
Match: gi|802597738|ref|XP_012072408.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 157.9 bits (398), Expect = 8.8e-36
Identity = 80/101 (79.21%), Postives = 85/101 (84.16%), Query Frame = 1 

Query: 1   MEVSGSSKKMIATQAEMVEARAPIPYRDLCAHLLILLNKCRQSEFYLPWKCENERHSYEK 60
           MEV GSSK MIATQAEMVEA+ PIPYRD CAHLLI LNKCRQ+EFYLPWKCENERHSYEK
Sbjct: 1   MEVQGSSKPMIATQAEMVEAKVPIPYRDQCAHLLIPLNKCRQAEFYLPWKCENERHSYEK 60

Query: 61  CEYELVMERIFQMLKIREEEANLKK------GINLIPKTAN 96
           CEYEL+MER+ QM KIREEEA LK+       I LIPKTAN
Sbjct: 61  CEYELLMERMLQMQKIREEEAKLKQAQKQGGSIPLIPKTAN 101

[Close]
BLAST of CmaCh04G000010 vs. NCBI nr
Match: gi|823158129|ref|XP_012478939.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 155.2 bits (391), Expect = 5.7e-35
Identity = 79/101 (78.22%), Postives = 84/101 (83.17%), Query Frame = 1 

Query: 1   MEVSGSSKKMIATQAEMVEARAPIPYRDLCAHLLILLNKCRQSEFYLPWKCENERHSYEK 60
           MEV GSSKKMIATQAEMVE + PIPYRD CAHLLI LNKCRQ+EFYLPWKCE ERHSYEK
Sbjct: 1   MEVEGSSKKMIATQAEMVENKVPIPYRDQCAHLLIPLNKCRQAEFYLPWKCEIERHSYEK 60

Query: 61  CEYELVMERIFQMLKIREEEANLKK------GINLIPKTAN 96
           CEYELVMER+ QM KIREEEA LK+       + LIPKTAN
Sbjct: 61  CEYELVMERMLQMQKIREEEAKLKQAGKQGVSVPLIPKTAN 101

The following BLAST results are available for this feature:
BLAST of CmaCh04G000010 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NDUB7_ARATH6.5e-3168.63NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 OS=Arabidopsis thali... [more]
NDUB7_DICDI4.2e-1447.30NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 OS=Dictyostelium dis... [more]
BLAST of CmaCh04G000010 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KMK8_CUCSA1.1e-4088.54Uncharacterized protein OS=Cucumis sativus GN=Csa_5G277970 PE=4 SV=1[more]
A0A067EXL1_CITSI1.6e-3680.39Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034138mg PE=4 SV=1[more]
V4UAW1_9ROSI1.6e-3680.39Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017277mg PE=4 SV=1[more]
A0A067KTF2_JATCU6.1e-3679.21Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04846 PE=4 SV=1[more]
A0A0D2NDD0_GOSRA4.0e-3578.22Uncharacterized protein OS=Gossypium raimondii GN=B456_005G154900 PE=4 SV=1[more]
BLAST of CmaCh04G000010 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G02050.13.7e-3268.63 NADH-ubiquinone oxidoreductase B18 subunit, putative[more]
BLAST of CmaCh04G000010 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449445264|ref|XP_004140393.1|1.5e-4088.54PREDICTED: NADH dehydrogenase [ubiquinone][more]
gi|659120462|ref|XP_008460206.1|8.5e-3985.42PREDICTED: NADH dehydrogenase [ubiquinone][more]
gi|567911451|ref|XP_006448039.1|2.3e-3680.39hypothetical protein CICLE_v10017277mg [Citrus clementina][more]
gi|802597738|ref|XP_012072408.1|8.8e-3679.21PREDICTED: NADH dehydrogenase [ubiquinone][more]
gi|823158129|ref|XP_012478939.1|5.7e-3578.22PREDICTED: NADH dehydrogenase [ubiquinone][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008698NADH_UbQ_OxRdtase_B18_su
Vocabulary: Molecular Function
TermDefinition
GO:0003954NADH dehydrogenase activity
GO:0008137NADH dehydrogenase (ubiquinone) activity
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006120 mitochondrial electron transport, NADH to ubiquinone
biological_process GO:0015992 proton transport
biological_process GO:0006814 sodium ion transport
biological_process GO:0006744 ubiquinone biosynthetic process
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0005747 mitochondrial respiratory chain complex I
cellular_component GO:0005739 mitochondrion
molecular_function GO:0008137 NADH dehydrogenase (ubiquinone) activity
molecular_function GO:0003954 NADH dehydrogenase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G000010.1CmaCh04G000010.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008698NADH:ubiquinone oxidoreductase, B18 subunitPANTHERPTHR20900NADH:UBIQUINONE OXIDOREDUCTASE B18-LIKE SUBUNITcoord: 1..95
score: 5.6
IPR008698NADH:ubiquinone oxidoreductase, B18 subunitPFAMPF05676NDUF_B7coord: 11..71
score: 1.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh04G000010Cla016936Watermelon (97103) v1cmawmB743
CmaCh04G000010ClCG11G000640Watermelon (Charleston Gray)cmawcgB626
CmaCh04G000010CSPI05G12260Wild cucumber (PI 183967)cmacpiB751
CmaCh04G000010CmoCh04G000020Cucurbita moschata (Rifu)cmacmoB728
CmaCh04G000010Cp4.1LG01g06490Cucurbita pepo (Zucchini)cmacpeB720
CmaCh04G000010Cla97C11G206950Watermelon (97103) v2cmawmbB730
CmaCh04G000010CsGy5G009200Cucumber (Gy14) v2cgybcmaB664
CmaCh04G000010Carg27082Silver-seed gourdcarcmaB1030
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None