CmoCh03G011120 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh03G011120
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr03 : 8958894 .. 8959301 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAGCGGCCGGAGATGAAGGTGCCGACCTTGAATCGGACGCGACCGTCGATTTTGATGGACAACAAGACGGTGCCGACGGCCTGGTCTTGATTGAGAGCGGCGCCGTTGTAGGGAGAGATCGGAACGGCGTTACCAACGACGAACGGTGACCAGATGTTGATGTCGTTGTGGCCTTGATAGTTAGGTTGAATGACGGTACGGAGAGTGATCTGTTGGTTCCGGTAGACGGCGTAGACATCGAGGCGGTCGTAGTAGATTCCGATCTTGTCGTTAGGGTTCCGGGAGGAGATGGTGACTTGGATACTGGAGGAGATAAAATTAGCGGCGCTGACGTTGAAGAGGAAGACGGTGGCGTCTTGGATGATGAATTTGGGCTTCGTCGGCTGAAGAATGGCCCAAATTAA

mRNA sequence

ATGGTAGCGGCCGGAGATGAAGGTGCCGACCTTGAATCGGACGCGACCGTCGATTTTGATGGACAACAAGACGGTGCCGACGGCCTGGTCTTGATTGAGAGCGGCGCCGTTGTAGGGAGAGATCGGAACGGCGTTACCAACGACGAACGGTTGAATGACGGTACGGAGAGTGATCTGTTGGTTCCGGTAGACGGCGTAGACATCGAGGCGGTCGTAGTAGATTCCGATCTTGTCGTTAGGGTTCCGGGAGGAGATGGTGACTTGGATACTGGAGGAGATAAAATTAGCGGCGCTGACGTTGAAGAGGAAGACGGTGGCGTCTTGGATGATGAATTTGGGCTTCGTCGGCTGAAGAATGGCCCAAATTAA

Coding sequence (CDS)

ATGGTAGCGGCCGGAGATGAAGGTGCCGACCTTGAATCGGACGCGACCGTCGATTTTGATGGACAACAAGACGGTGCCGACGGCCTGGTCTTGATTGAGAGCGGCGCCGTTGTAGGGAGAGATCGGAACGGCGTTACCAACGACGAACGGTTGAATGACGGTACGGAGAGTGATCTGTTGGTTCCGGTAGACGGCGTAGACATCGAGGCGGTCGTAGTAGATTCCGATCTTGTCGTTAGGGTTCCGGGAGGAGATGGTGACTTGGATACTGGAGGAGATAAAATTAGCGGCGCTGACGTTGAAGAGGAAGACGGTGGCGTCTTGGATGATGAATTTGGGCTTCGTCGGCTGAAGAATGGCCCAAATTAA
Homology
[Close]
BLAST of CmoCh03G011120 vs. TrEMBL
Match: A0A0A0KKM0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G454480 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 6.3e-38
Identity = 91/135 (67.41%), Postives = 105/135 (77.78%), Query Frame = 1 

Query: 1   MVAAGDEGADLESDATVDFDGQQDGADGLVLIESGAVVGRDRNGVTNDER---------- 60
           MVAAGDEG D ESDA V+F+GQ DG +GL+LI+ GAVVGRD N VT++E           
Sbjct: 1   MVAAGDEGTDFESDAAVEFNGQLDGTNGLILIKGGAVVGRDGNVVTDEEGRPDVDIVVAL 60

Query: 61  ---LNDGTESDLLVPVDGVDIEAVVVDSDLVVRVPGGDGDLDTGGDKISGADVEEEDGGV 120
              LN GTESDLLV V+GVD+EAVV+DSDLVVRV G DGDLDTGGD++SG ++EE DGGV
Sbjct: 61  VGWLNAGTESDLLVMVNGVDVEAVVIDSDLVVRVTGIDGDLDTGGDEVSGGEIEEVDGGV 120

Query: 121 LDDEFGLRRLKNGPN 123
           LDDEFGL  LKNGPN
Sbjct: 121 LDDEFGLCGLKNGPN 135

[Close]
BLAST of CmoCh03G011120 vs. TrEMBL
Match: A0A162ADF4_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_013438 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.1e-13
Identity = 61/136 (44.85%), Postives = 77/136 (56.62%), Query Frame = 1 

Query: 1   MVAAGDEGADLESDATVDFDGQQDGADGLVLIESGAVVGRDRN-GVTNDERLN------- 60
           M+    EG++  S  ++  D QQ    GLVL +   VV R R+ G  N  R +       
Sbjct: 56  MIPTRSEGSNFPSHPSIHLDHQQYVPAGLVLAQRHPVVRRHRDVGAVNKRRPDVGVFVAL 115

Query: 61  ----DGTE-SDLLVPVDGVDIEAVVVDSDLVVRVPGGDGDLDTGGDKI-SGADVEEEDGG 120
               DG E SDLL PV G D+E VVVDSD  V V G DGDL+ GG+++  G DVE  DGG
Sbjct: 116 VGGEDGGEVSDLLAPVGGEDVELVVVDSDFAVGVSGSDGDLEVGGEEVGDGGDVEGVDGG 175

Query: 121 VLDDEFGLRRLKNGPN 123
           VL+ E GL  L+NGP+
Sbjct: 176 VLEGEAGLFGLENGPD 191

[Close]
BLAST of CmoCh03G011120 vs. TrEMBL
Match: A0A0A0LE53_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G780520 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.2e-13
Identity = 56/135 (41.48%), Postives = 75/135 (55.56%), Query Frame = 1 

Query: 1   MVAAGDEGADLESDATVDFDGQQDGADGLVLIESGAVVGRDRNGVTNDER---------- 60
           +V   DE +DL S+  V+FD +   +   VLI+     GRDR+G   DER          
Sbjct: 9   LVPPSDEASDLPSNLAVNFDQEHQCSGVPVLIQLRTDEGRDRHGGAGDERGPYVDVLMAL 68

Query: 61  ---LNDGTESDLLVPVDGVDIEAVVVDSDLVVRVPGGDGDLDTGGDKISGADVEEEDGGV 120
               +DG ESDLLV VDGVD+E VVVDSD  V V GG+ + + GG++     VE  DG V
Sbjct: 69  VETRDDGPESDLLVSVDGVDVEFVVVDSDSAVWVAGGNSEEEIGGEEAGDGGVEGVDGDV 128

Query: 121 LDDEFGLRRLKNGPN 123
           L +E G    ++GP+
Sbjct: 129 LKEESGFGGTEDGPD 143

[Close]
BLAST of CmoCh03G011120 vs. TrEMBL
Match: A0A0L9TTU3_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan02g014300 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.9e-10
Identity = 55/124 (44.35%), Postives = 67/124 (54.03%), Query Frame = 1 

Query: 1   MVAAGDEGADLESDATVDFDGQQDGADGLVLIESGAVVGRDRN-GVTNDERLN------- 60
           +VAAGDEGADL +D  V  DG +DG   LVL E+  V G D + G  +  R N       
Sbjct: 45  VVAAGDEGADLPADPAVSSDGDEDGTRSLVLAEALEVEGCDGDVGAVDKRRPNVDLFVAL 104

Query: 61  -----DGTESDLLVPVDGVDIEAVVVDSDLVVRVPGGDGDLDTGGDKISGADVEEEDGGV 112
                 G E  LL  V  V  EAVVVDSD+VVRV G + DL+TG  ++    VE  +G V
Sbjct: 105 IGGRDGGAEGHLLALVSDVGFEAVVVDSDVVVRVAGDERDLETGCQEVGDGGVEGVNGDV 164

[Close]
BLAST of CmoCh03G011120 vs. TrEMBL
Match: B7ZYJ5_MAIZE (Uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.2e-06
Identity = 51/135 (37.78%), Postives = 68/135 (50.37%), Query Frame = 1 

Query: 1   MVAAGDEGADLESDATVDFDGQQDGADGLVLIESGAVVGRDRNGVTNDE---------RL 60
           +V AGDEG  L +D  VD DG +     LVL E G  VGR R+    +E         RL
Sbjct: 74  VVVAGDEGPGLPADPAVDADGDEQVPRRLVLCERGGEVGRQRDVGGGEEGRPDGGVVGRL 133

Query: 61  NDGTES----DLLVPVDGVDIEAVVVDSDLVVRVPGGDGDLDTGGDKISGADVEEEDGGV 120
            +G +     DL  PV GV + AVVVD+D VV V      L   G+   GADV+  D  V
Sbjct: 134 EEGRQRGGHRDLHRPVLGVHVGAVVVDADAVVGVARRQRGLHGDGEVGGGADVDAHDAHV 193

Query: 121 LDDEFGLRRLKNGPN 123
           +++E  L   ++ P+
Sbjct: 194 VEEEARLGGAEDEPD 208

[Close]
BLAST of CmoCh03G011120 vs. NCBI nr
Match: gi|700193097|gb|KGN48301.1| (hypothetical protein Csa_6G454480 [Cucumis sativus])

HSP 1 Score: 164.9 bits (416), Expect = 9.1e-38
Identity = 91/135 (67.41%), Postives = 105/135 (77.78%), Query Frame = 1 

Query: 1   MVAAGDEGADLESDATVDFDGQQDGADGLVLIESGAVVGRDRNGVTNDER---------- 60
           MVAAGDEG D ESDA V+F+GQ DG +GL+LI+ GAVVGRD N VT++E           
Sbjct: 1   MVAAGDEGTDFESDAAVEFNGQLDGTNGLILIKGGAVVGRDGNVVTDEEGRPDVDIVVAL 60

Query: 61  ---LNDGTESDLLVPVDGVDIEAVVVDSDLVVRVPGGDGDLDTGGDKISGADVEEEDGGV 120
              LN GTESDLLV V+GVD+EAVV+DSDLVVRV G DGDLDTGGD++SG ++EE DGGV
Sbjct: 61  VGWLNAGTESDLLVMVNGVDVEAVVIDSDLVVRVTGIDGDLDTGGDEVSGGEIEEVDGGV 120

Query: 121 LDDEFGLRRLKNGPN 123
           LDDEFGL  LKNGPN
Sbjct: 121 LDDEFGLCGLKNGPN 135

[Close]
BLAST of CmoCh03G011120 vs. NCBI nr
Match: gi|1021041419|gb|KZM99200.1| (hypothetical protein DCAR_013438 [Daucus carota subsp. sativus])

HSP 1 Score: 84.3 bits (207), Expect = 1.6e-13
Identity = 61/136 (44.85%), Postives = 77/136 (56.62%), Query Frame = 1 

Query: 1   MVAAGDEGADLESDATVDFDGQQDGADGLVLIESGAVVGRDRN-GVTNDERLN------- 60
           M+    EG++  S  ++  D QQ    GLVL +   VV R R+ G  N  R +       
Sbjct: 56  MIPTRSEGSNFPSHPSIHLDHQQYVPAGLVLAQRHPVVRRHRDVGAVNKRRPDVGVFVAL 115

Query: 61  ----DGTE-SDLLVPVDGVDIEAVVVDSDLVVRVPGGDGDLDTGGDKI-SGADVEEEDGG 120
               DG E SDLL PV G D+E VVVDSD  V V G DGDL+ GG+++  G DVE  DGG
Sbjct: 116 VGGEDGGEVSDLLAPVGGEDVELVVVDSDFAVGVSGSDGDLEVGGEEVGDGGDVEGVDGG 175

Query: 121 VLDDEFGLRRLKNGPN 123
           VL+ E GL  L+NGP+
Sbjct: 176 VLEGEAGLFGLENGPD 191

[Close]
BLAST of CmoCh03G011120 vs. NCBI nr
Match: gi|700204066|gb|KGN59199.1| (hypothetical protein Csa_3G780520 [Cucumis sativus])

HSP 1 Score: 82.8 bits (203), Expect = 4.6e-13
Identity = 56/135 (41.48%), Postives = 75/135 (55.56%), Query Frame = 1 

Query: 1   MVAAGDEGADLESDATVDFDGQQDGADGLVLIESGAVVGRDRNGVTNDER---------- 60
           +V   DE +DL S+  V+FD +   +   VLI+     GRDR+G   DER          
Sbjct: 9   LVPPSDEASDLPSNLAVNFDQEHQCSGVPVLIQLRTDEGRDRHGGAGDERGPYVDVLMAL 68

Query: 61  ---LNDGTESDLLVPVDGVDIEAVVVDSDLVVRVPGGDGDLDTGGDKISGADVEEEDGGV 120
               +DG ESDLLV VDGVD+E VVVDSD  V V GG+ + + GG++     VE  DG V
Sbjct: 69  VETRDDGPESDLLVSVDGVDVEFVVVDSDSAVWVAGGNSEEEIGGEEAGDGGVEGVDGDV 128

Query: 121 LDDEFGLRRLKNGPN 123
           L +E G    ++GP+
Sbjct: 129 LKEESGFGGTEDGPD 143

[Close]
BLAST of CmoCh03G011120 vs. NCBI nr
Match: gi|920690768|gb|KOM33993.1| (hypothetical protein LR48_Vigan02g014300 [Vigna angularis])

HSP 1 Score: 73.6 bits (179), Expect = 2.8e-10
Identity = 55/124 (44.35%), Postives = 67/124 (54.03%), Query Frame = 1 

Query: 1   MVAAGDEGADLESDATVDFDGQQDGADGLVLIESGAVVGRDRN-GVTNDERLN------- 60
           +VAAGDEGADL +D  V  DG +DG   LVL E+  V G D + G  +  R N       
Sbjct: 45  VVAAGDEGADLPADPAVSSDGDEDGTRSLVLAEALEVEGCDGDVGAVDKRRPNVDLFVAL 104

Query: 61  -----DGTESDLLVPVDGVDIEAVVVDSDLVVRVPGGDGDLDTGGDKISGADVEEEDGGV 112
                 G E  LL  V  V  EAVVVDSD+VVRV G + DL+TG  ++    VE  +G V
Sbjct: 105 IGGRDGGAEGHLLALVSDVGFEAVVVDSDVVVRVAGDERDLETGCQEVGDGGVEGVNGDV 164

[Close]
BLAST of CmoCh03G011120 vs. NCBI nr
Match: gi|219885239|gb|ACL52994.1| (unknown [Zea mays])

HSP 1 Score: 60.1 bits (144), Expect = 3.2e-06
Identity = 51/135 (37.78%), Postives = 68/135 (50.37%), Query Frame = 1 

Query: 1   MVAAGDEGADLESDATVDFDGQQDGADGLVLIESGAVVGRDRNGVTNDE---------RL 60
           +V AGDEG  L +D  VD DG +     LVL E G  VGR R+    +E         RL
Sbjct: 74  VVVAGDEGPGLPADPAVDADGDEQVPRRLVLCERGGEVGRQRDVGGGEEGRPDGGVVGRL 133

Query: 61  NDGTES----DLLVPVDGVDIEAVVVDSDLVVRVPGGDGDLDTGGDKISGADVEEEDGGV 120
            +G +     DL  PV GV + AVVVD+D VV V      L   G+   GADV+  D  V
Sbjct: 134 EEGRQRGGHRDLHRPVLGVHVGAVVVDADAVVGVARRQRGLHGDGEVGGGADVDAHDAHV 193

Query: 121 LDDEFGLRRLKNGPN 123
           +++E  L   ++ P+
Sbjct: 194 VEEEARLGGAEDEPD 208

The following BLAST results are available for this feature:
BLAST of CmoCh03G011120 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh03G011120 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KKM0_CUCSA6.3e-3867.41Uncharacterized protein OS=Cucumis sativus GN=Csa_6G454480 PE=4 SV=1[more]
A0A162ADF4_DAUCA1.1e-1344.85Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_013438 PE=4 SV=1[more]
A0A0A0LE53_CUCSA3.2e-1341.48Uncharacterized protein OS=Cucumis sativus GN=Csa_3G780520 PE=4 SV=1[more]
A0A0L9TTU3_PHAAN1.9e-1044.35Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan02g014300 PE=4 SV=1[more]
B7ZYJ5_MAIZE2.2e-0637.78Uncharacterized protein OS=Zea mays PE=2 SV=1[more]
BLAST of CmoCh03G011120 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh03G011120 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700193097|gb|KGN48301.1|9.1e-3867.41hypothetical protein Csa_6G454480 [Cucumis sativus][more]
gi|1021041419|gb|KZM99200.1|1.6e-1344.85hypothetical protein DCAR_013438 [Daucus carota subsp. sativus][more]
gi|700204066|gb|KGN59199.1|4.6e-1341.48hypothetical protein Csa_3G780520 [Cucumis sativus][more]
gi|920690768|gb|KOM33993.1|2.8e-1044.35hypothetical protein LR48_Vigan02g014300 [Vigna angularis][more]
gi|219885239|gb|ACL52994.1|3.2e-0637.78unknown [Zea mays][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh03G011120.1CmoCh03G011120.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh03G011120CmaCh03G011220Cucurbita maxima (Rimu)cmacmoB653
CmoCh03G011120Csa6G454480Cucumber (Chinese Long) v2cmocuB670
CmoCh03G011120ClCG01G014970Watermelon (Charleston Gray)cmowcgB575
CmoCh03G011120Cp4.1LG10g03810Cucurbita pepo (Zucchini)cmocpeB606
CmoCh03G011120Cp4.1LG19g04840Cucurbita pepo (Zucchini)cmocpeB624
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh03G011120Melon (DHL92) v3.5.1cmomeB590
CmoCh03G011120Melon (DHL92) v3.5.1cmomeB598
CmoCh03G011120Watermelon (Charleston Gray)cmowcgB568
CmoCh03G011120Watermelon (Charleston Gray)cmowcgB581
CmoCh03G011120Watermelon (97103) v1cmowmB605
CmoCh03G011120Watermelon (97103) v1cmowmB620
CmoCh03G011120Watermelon (97103) v1cmowmB641
CmoCh03G011120Cucurbita pepo (Zucchini)cmocpeB635
CmoCh03G011120Cucurbita pepo (Zucchini)cmocpeB641
CmoCh03G011120Bottle gourd (USVL1VR-Ls)cmolsiB576
CmoCh03G011120Bottle gourd (USVL1VR-Ls)cmolsiB582
CmoCh03G011120Bottle gourd (USVL1VR-Ls)cmolsiB597
CmoCh03G011120Cucumber (Gy14) v2cgybcmoB384
CmoCh03G011120Cucumber (Gy14) v2cgybcmoB811
CmoCh03G011120Melon (DHL92) v3.6.1cmomedB676
CmoCh03G011120Melon (DHL92) v3.6.1cmomedB687
CmoCh03G011120Silver-seed gourdcarcmoB0336
CmoCh03G011120Silver-seed gourdcarcmoB0349
CmoCh03G011120Silver-seed gourdcarcmoB1095
CmoCh03G011120Silver-seed gourdcarcmoB1238
CmoCh03G011120Cucumber (Chinese Long) v3cmocucB0771
CmoCh03G011120Cucumber (Chinese Long) v3cmocucB0794
CmoCh03G011120Watermelon (97103) v2cmowmbB642
CmoCh03G011120Watermelon (97103) v2cmowmbB643
CmoCh03G011120Watermelon (97103) v2cmowmbB654
CmoCh03G011120Wax gourdcmowgoB0784
CmoCh03G011120Wax gourdcmowgoB0768
CmoCh03G011120Cucurbita moschata (Rifu)cmocmoB217
CmoCh03G011120Cucurbita moschata (Rifu)cmocmoB430
CmoCh03G011120Cucurbita moschata (Rifu)cmocmoB454
CmoCh03G011120Cucurbita moschata (Rifu)cmocmoB455
CmoCh03G011120Cucumber (Gy14) v1cgycmoB0148
CmoCh03G011120Cucumber (Gy14) v1cgycmoB0680
CmoCh03G011120Cucurbita maxima (Rimu)cmacmoB263
CmoCh03G011120Cucurbita maxima (Rimu)cmacmoB827
CmoCh03G011120Cucurbita maxima (Rimu)cmacmoB858
CmoCh03G011120Wild cucumber (PI 183967)cmocpiB659
CmoCh03G011120Wild cucumber (PI 183967)cmocpiB681