Cp4.1LG10g03810 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG10g03810
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Unknown protein
Location	Cp4.1LG10 : 1820435 .. 1820842 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAGCGGCCGGAGATGAAGGTGCCGACCTTGAATCGGACGCGACCGTCGATTTTGATGGACAACAAGACGGTGCCGACGGCCTGGTCTTGGTTGAGAGCGGCGCCGTTGTAGGGAGAGATCGGAACGGCGTTACCGACGACGAACGGCGACCAGATGTTGATGTCGTTGTGGCCTTGATAGTTAGGTTGAATGACGGTACGGAGAGTGATCTGTTGGTTCCGGTAGACGGCGTAGACATCGAGGCGGTCGTAGTAGATTCCGATCTTGTCGTTAGGGTTCCGGGAGGAGATGGTGACTTGGATACTGGAGGAGATAAAATTAGCGGCGGTGACGTTGAAGAGGAAGACGGTGGCGTCTTGGATGATGAATTTGGGCTTTGTCGGCTGAAGAATGGCCCAAATTAA

mRNA sequence

ATGGTAGCGGCCGGAGATGAAGGTGCCGACCTTGAATCGGACGCGACCGTCGATTTTGATGGACAACAAGACGGTGCCGACGGCCTGGTCTTGGTTGAGAGCGGCGCCGTTGTAGGGAGAGATCGGAACGGCGTTACCGACGACGAACGGCGACCAGATGTTGATGTCGTTGTGGCCTTGATAGTTAGGTTGAATGACGGTACGGAGAGTGATCTGTTGGTTCCGGTAGACGGCGTAGACATCGAGGCGGTCGTAGTAGATTCCGATCTTGTCGTTAGGGTTCCGGGAGGAGATGGTGACTTGGATACTGGAGGAGATAAAATTAGCGGCGGTGACGTTGAAGAGGAAGACGGTGGCGTCTTGGATGATGAATTTGGGCTTTGTCGGCTGAAGAATGGCCCAAATTAA

Coding sequence (CDS)

ATGGTAGCGGCCGGAGATGAAGGTGCCGACCTTGAATCGGACGCGACCGTCGATTTTGATGGACAACAAGACGGTGCCGACGGCCTGGTCTTGGTTGAGAGCGGCGCCGTTGTAGGGAGAGATCGGAACGGCGTTACCGACGACGAACGGCGACCAGATGTTGATGTCGTTGTGGCCTTGATAGTTAGGTTGAATGACGGTACGGAGAGTGATCTGTTGGTTCCGGTAGACGGCGTAGACATCGAGGCGGTCGTAGTAGATTCCGATCTTGTCGTTAGGGTTCCGGGAGGAGATGGTGACTTGGATACTGGAGGAGATAAAATTAGCGGCGGTGACGTTGAAGAGGAAGACGGTGGCGTCTTGGATGATGAATTTGGGCTTTGTCGGCTGAAGAATGGCCCAAATTAA

Protein sequence

MVAAGDEGADLESDATVDFDGQQDGADGLVLVESGAVVGRDRNGVTDDERRPDVDVVVALIVRLNDGTESDLLVPVDGVDIEAVVVDSDLVVRVPGGDGDLDTGGDKISGGDVEEEDGGVLDDEFGLCRLKNGPN

Homology

[Close]

BLAST of Cp4.1LG10g03810 vs. TrEMBL
Match: A0A0A0KKM0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G454480 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 3.4e-48
Identity = 102/135 (75.56%), Postives = 118/135 (87.41%), Query Frame = 1


Query: 1   MVAAGDEGADLESDATVDFDGQQDGADGLVLVESGAVVGRDRNGVTDDERRPDVDVVVAL 60
           MVAAGDEG D ESDA V+F+GQ DG +GL+L++ GAVVGRD N VTD+E RPDVD+VVAL
Sbjct: 1   MVAAGDEGTDFESDAAVEFNGQLDGTNGLILIKGGAVVGRDGNVVTDEEGRPDVDIVVAL 60

Query: 61  IVRLNDGTESDLLVPVDGVDIEAVVVDSDLVVRVPGGDGDLDTGGDKISGGDVEEEDGGV 120
           +  LN GTESDLLV V+GVD+EAVV+DSDLVVRV G DGDLDTGGD++SGG++EE DGGV
Sbjct: 61  VGWLNAGTESDLLVMVNGVDVEAVVIDSDLVVRVTGIDGDLDTGGDEVSGGEIEEVDGGV 120

Query: 121 LDDEFGLCRLKNGPN 136
           LDDEFGLC LKNGPN
Sbjct: 121 LDDEFGLCGLKNGPN 135

[Close]

BLAST of Cp4.1LG10g03810 vs. TrEMBL
Match: A0A162ADF4_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_013438 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 3.9e-20
Identity = 66/136 (48.53%), Postives = 85/136 (62.50%), Query Frame = 1


Query: 1   MVAAGDEGADLESDATVDFDGQQDGADGLVLVESGAVVGRDRNGVTDDERRPDVDVVVAL 60
           M+    EG++  S  ++  D QQ    GLVL +   VV R R+    ++RRPDV V VAL
Sbjct: 56  MIPTRSEGSNFPSHPSIHLDHQQYVPAGLVLAQRHPVVRRHRDVGAVNKRRPDVGVFVAL 115

Query: 61  IVRLNDGTESDLLVPVDGVDIEAVVVDSDLVVRVPGGDGDLDTGGDKI-SGGDVEEEDGG 120
           +   + G  SDLL PV G D+E VVVDSD  V V G DGDL+ GG+++  GGDVE  DGG
Sbjct: 116 VGGEDGGEVSDLLAPVGGEDVELVVVDSDFAVGVSGSDGDLEVGGEEVGDGGDVEGVDGG 175

Query: 121 VLDDEFGLCRLKNGPN 136
           VL+ E GL  L+NGP+
Sbjct: 176 VLEGEAGLFGLENGPD 191

[Close]

BLAST of Cp4.1LG10g03810 vs. TrEMBL
Match: A0A0A0LE53_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G780520 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 3.3e-19
Identity = 62/135 (45.93%), Postives = 85/135 (62.96%), Query Frame = 1


Query: 1   MVAAGDEGADLESDATVDFDGQQDGADGLVLVESGAVVGRDRNGVTDDERRPDVDVVVAL 60
           +V   DE +DL S+  V+FD +   +   VL++     GRDR+G   DER P VDV++AL
Sbjct: 9   LVPPSDEASDLPSNLAVNFDQEHQCSGVPVLIQLRTDEGRDRHGGAGDERGPYVDVLMAL 68

Query: 61  IVRLNDGTESDLLVPVDGVDIEAVVVDSDLVVRVPGGDGDLDTGGDKISGGDVEEEDGGV 120
           +   +DG ESDLLV VDGVD+E VVVDSD  V V GG+ + + GG++   G VE  DG V
Sbjct: 69  VETRDDGPESDLLVSVDGVDVEFVVVDSDSAVWVAGGNSEEEIGGEEAGDGGVEGVDGDV 128

Query: 121 LDDEFGLCRLKNGPN 136
           L +E G    ++GP+
Sbjct: 129 LKEESGFGGTEDGPD 143

[Close]

BLAST of Cp4.1LG10g03810 vs. TrEMBL
Match: A0A0L9TTU3_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan02g014300 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.8e-17
Identity = 63/124 (50.81%), Postives = 78/124 (62.90%), Query Frame = 1


Query: 1   MVAAGDEGADLESDATVDFDGQQDGADGLVLVESGAVVGRDRNGVTDDERRPDVDVVVAL 60
           +VAAGDEGADL +D  V  DG +DG   LVL E+  V G D +    D+RRP+VD+ VAL
Sbjct: 45  VVAAGDEGADLPADPAVSSDGDEDGTRSLVLAEALEVEGCDGDVGAVDKRRPNVDLFVAL 104

Query: 61  IVRLNDGTESDLLVPVDGVDIEAVVVDSDLVVRVPGGDGDLDTGGDKISGGDVEEEDGGV 120
           I   + G E  LL  V  V  EAVVVDSD+VVRV G + DL+TG  ++  G VE  +G V
Sbjct: 105 IGGRDGGAEGHLLALVSDVGFEAVVVDSDVVVRVAGDERDLETGCQEVGDGGVEGVNGDV 164

Query: 121 LDDE 125
           L  E
Sbjct: 165 LKSE 168

[Close]

BLAST of Cp4.1LG10g03810 vs. TrEMBL
Match: A0A0A9GTR3_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 4.0e-09
Identity = 52/135 (38.52%), Postives = 72/135 (53.33%), Query Frame = 1


Query: 1   MVAAGDEGADLESDATVDFDGQQDGADGLVLVESGAVVGRDRNGVTDDERRPDVDVVVAL 60
           +V AGDEG    +   VD DG++     LVL +    VGR R+    +E RPD  V VAL
Sbjct: 67  VVVAGDEGPRFPAYPAVDADGEEQVPRRLVLRQRHGEVGRQRHVGRGEEGRPDGGVEVAL 126

Query: 61  IVRLNDGTESDLLVPVDGVDIEAVVVDSDLVVRVPGGDGDLDTGGDKISGGDVEEEDGGV 120
           +     G + DL   V G  ++AVVVD+D VV V     DL   G+   GGDV+ +DG V
Sbjct: 127 VGDGKRGGDGDLEAAVLGEGVDAVVVDADAVVGVARRQRDLHGDGEVGGGGDVDADDGDV 186

Query: 121 LDDEFGLCRLKNGPN 136
           ++ E  L   ++ P+
Sbjct: 187 VEVEARLAGAEDQPD 201

[Close]

BLAST of Cp4.1LG10g03810 vs. NCBI nr
Match: gi|700193097|gb|KGN48301.1| (hypothetical protein Csa_6G454480 [Cucumis sativus])

HSP 1 Score: 199.1 bits (505), Expect = 4.8e-48
Identity = 102/135 (75.56%), Postives = 118/135 (87.41%), Query Frame = 1


Query: 1   MVAAGDEGADLESDATVDFDGQQDGADGLVLVESGAVVGRDRNGVTDDERRPDVDVVVAL 60
           MVAAGDEG D ESDA V+F+GQ DG +GL+L++ GAVVGRD N VTD+E RPDVD+VVAL
Sbjct: 1   MVAAGDEGTDFESDAAVEFNGQLDGTNGLILIKGGAVVGRDGNVVTDEEGRPDVDIVVAL 60

Query: 61  IVRLNDGTESDLLVPVDGVDIEAVVVDSDLVVRVPGGDGDLDTGGDKISGGDVEEEDGGV 120
           +  LN GTESDLLV V+GVD+EAVV+DSDLVVRV G DGDLDTGGD++SGG++EE DGGV
Sbjct: 61  VGWLNAGTESDLLVMVNGVDVEAVVIDSDLVVRVTGIDGDLDTGGDEVSGGEIEEVDGGV 120

Query: 121 LDDEFGLCRLKNGPN 136
           LDDEFGLC LKNGPN
Sbjct: 121 LDDEFGLCGLKNGPN 135

[Close]

BLAST of Cp4.1LG10g03810 vs. NCBI nr
Match: gi|1021041419|gb|KZM99200.1| (hypothetical protein DCAR_013438 [Daucus carota subsp. sativus])

HSP 1 Score: 105.9 bits (263), Expect = 5.6e-20
Identity = 66/136 (48.53%), Postives = 85/136 (62.50%), Query Frame = 1


Query: 1   MVAAGDEGADLESDATVDFDGQQDGADGLVLVESGAVVGRDRNGVTDDERRPDVDVVVAL 60
           M+    EG++  S  ++  D QQ    GLVL +   VV R R+    ++RRPDV V VAL
Sbjct: 56  MIPTRSEGSNFPSHPSIHLDHQQYVPAGLVLAQRHPVVRRHRDVGAVNKRRPDVGVFVAL 115

Query: 61  IVRLNDGTESDLLVPVDGVDIEAVVVDSDLVVRVPGGDGDLDTGGDKI-SGGDVEEEDGG 120
           +   + G  SDLL PV G D+E VVVDSD  V V G DGDL+ GG+++  GGDVE  DGG
Sbjct: 116 VGGEDGGEVSDLLAPVGGEDVELVVVDSDFAVGVSGSDGDLEVGGEEVGDGGDVEGVDGG 175

Query: 121 VLDDEFGLCRLKNGPN 136
           VL+ E GL  L+NGP+
Sbjct: 176 VLEGEAGLFGLENGPD 191

[Close]

BLAST of Cp4.1LG10g03810 vs. NCBI nr
Match: gi|700204066|gb|KGN59199.1| (hypothetical protein Csa_3G780520 [Cucumis sativus])

HSP 1 Score: 102.8 bits (255), Expect = 4.7e-19
Identity = 62/135 (45.93%), Postives = 85/135 (62.96%), Query Frame = 1


Query: 1   MVAAGDEGADLESDATVDFDGQQDGADGLVLVESGAVVGRDRNGVTDDERRPDVDVVVAL 60
           +V   DE +DL S+  V+FD +   +   VL++     GRDR+G   DER P VDV++AL
Sbjct: 9   LVPPSDEASDLPSNLAVNFDQEHQCSGVPVLIQLRTDEGRDRHGGAGDERGPYVDVLMAL 68

Query: 61  IVRLNDGTESDLLVPVDGVDIEAVVVDSDLVVRVPGGDGDLDTGGDKISGGDVEEEDGGV 120
           +   +DG ESDLLV VDGVD+E VVVDSD  V V GG+ + + GG++   G VE  DG V
Sbjct: 69  VETRDDGPESDLLVSVDGVDVEFVVVDSDSAVWVAGGNSEEEIGGEEAGDGGVEGVDGDV 128

Query: 121 LDDEFGLCRLKNGPN 136
           L +E G    ++GP+
Sbjct: 129 LKEESGFGGTEDGPD 143

[Close]

BLAST of Cp4.1LG10g03810 vs. NCBI nr
Match: gi|920690768|gb|KOM33993.1| (hypothetical protein LR48_Vigan02g014300 [Vigna angularis])

HSP 1 Score: 97.1 bits (240), Expect = 2.6e-17
Identity = 63/124 (50.81%), Postives = 78/124 (62.90%), Query Frame = 1


Query: 1   MVAAGDEGADLESDATVDFDGQQDGADGLVLVESGAVVGRDRNGVTDDERRPDVDVVVAL 60
           +VAAGDEGADL +D  V  DG +DG   LVL E+  V G D +    D+RRP+VD+ VAL
Sbjct: 45  VVAAGDEGADLPADPAVSSDGDEDGTRSLVLAEALEVEGCDGDVGAVDKRRPNVDLFVAL 104

Query: 61  IVRLNDGTESDLLVPVDGVDIEAVVVDSDLVVRVPGGDGDLDTGGDKISGGDVEEEDGGV 120
           I   + G E  LL  V  V  EAVVVDSD+VVRV G + DL+TG  ++  G VE  +G V
Sbjct: 105 IGGRDGGAEGHLLALVSDVGFEAVVVDSDVVVRVAGDERDLETGCQEVGDGGVEGVNGDV 164

Query: 121 LDDE 125
           L  E
Sbjct: 165 LKSE 168

[Close]

BLAST of Cp4.1LG10g03810 vs. NCBI nr
Match: gi|219885239|gb|ACL52994.1| (unknown [Zea mays])

HSP 1 Score: 68.9 bits (167), Expect = 7.5e-09
Identity = 54/135 (40.00%), Postives = 69/135 (51.11%), Query Frame = 1


Query: 1   MVAAGDEGADLESDATVDFDGQQDGADGLVLVESGAVVGRDRNGVTDDERRPDVDVVVAL 60
           +V AGDEG  L +D  VD DG +     LVL E G  VGR R+    +E RPD  VV  L
Sbjct: 74  VVVAGDEGPGLPADPAVDADGDEQVPRRLVLCERGGEVGRQRDVGGGEEGRPDGGVVGRL 133

Query: 61  IVRLNDGTESDLLVPVDGVDIEAVVVDSDLVVRVPGGDGDLDTGGDKISGGDVEEEDGGV 120
                 G   DL  PV GV + AVVVD+D VV V      L   G+   G DV+  D  V
Sbjct: 134 EEGRQRGGHRDLHRPVLGVHVGAVVVDADAVVGVARRQRGLHGDGEVGGGADVDAHDAHV 193

Query: 121 LDDEFGLCRLKNGPN 136
           +++E  L   ++ P+
Sbjct: 194 VEEEARLGGAEDEPD 208

The following BLAST results are available for this feature:

BLAST of Cp4.1LG10g03810 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG10g03810 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KKM0_CUCSA	3.4e-48	75.56	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G454480 PE=4 SV=1	[more]
A0A162ADF4_DAUCA	3.9e-20	48.53	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_013438 PE=4 SV=1	[more]
A0A0A0LE53_CUCSA	3.3e-19	45.93	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G780520 PE=4 SV=1	[more]
A0A0L9TTU3_PHAAN	1.8e-17	50.81	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan02g014300 PE=4 SV=1	[more]
A0A0A9GTR3_ARUDO	4.0e-09	38.52	Uncharacterized protein OS=Arundo donax PE=4 SV=1	[more]

BLAST of Cp4.1LG10g03810 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG10g03810 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700193097\|gb\|KGN48301.1\|	4.8e-48	75.56	hypothetical protein Csa_6G454480 [Cucumis sativus]	[more]
gi\|1021041419\|gb\|KZM99200.1\|	5.6e-20	48.53	hypothetical protein DCAR_013438 [Daucus carota subsp. sativus]	[more]
gi\|700204066\|gb\|KGN59199.1\|	4.7e-19	45.93	hypothetical protein Csa_3G780520 [Cucumis sativus]	[more]
gi\|920690768\|gb\|KOM33993.1\|	2.6e-17	50.81	hypothetical protein LR48_Vigan02g014300 [Vigna angularis]	[more]
gi\|219885239\|gb\|ACL52994.1\|	7.5e-09	40.00	unknown [Zea mays]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG10g03810.1	Cp4.1LG10g03810.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG10g03810	CmaCh03G011220	Cucurbita maxima (Rimu)	cmacpeB656
Cp4.1LG10g03810	CmoCh03G011120	Cucurbita moschata (Rifu)	cmocpeB606
Cp4.1LG10g03810	Csa6G454480	Cucumber (Chinese Long) v2	cpecuB085
Cp4.1LG10g03810	ClCG01G014970	Watermelon (Charleston Gray)	cpewcgB061

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cp4.1LG10g03810	Cp4.1LG19g04840	Cucurbita pepo (Zucchini)	cpecpeB076

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG10g03810	Cucurbita pepo (Zucchini)	cpecpeB092
Cp4.1LG10g03810	Cucumber (Gy14) v1	cgycpeB0145
Cp4.1LG10g03810	Cucurbita maxima (Rimu)	cmacpeB254
Cp4.1LG10g03810	Cucurbita maxima (Rimu)	cmacpeB866
Cp4.1LG10g03810	Cucurbita moschata (Rifu)	cmocpeB218
Cp4.1LG10g03810	Cucurbita moschata (Rifu)	cmocpeB806
Cp4.1LG10g03810	Wild cucumber (PI 183967)	cpecpiB059
Cp4.1LG10g03810	Wild cucumber (PI 183967)	cpecpiB081
Cp4.1LG10g03810	Bottle gourd (USVL1VR-Ls)	cpelsiB054
Cp4.1LG10g03810	Bottle gourd (USVL1VR-Ls)	cpelsiB062
Cp4.1LG10g03810	Watermelon (Charleston Gray)	cpewcgB057
Cp4.1LG10g03810	Watermelon (97103) v1	cpewmB075
Cp4.1LG10g03810	Melon (DHL92) v3.5.1	cpemeB054
Cp4.1LG10g03810	Melon (DHL92) v3.5.1	cpemeB069
Cp4.1LG10g03810	Cucumber (Gy14) v2	cgybcpeB710
Cp4.1LG10g03810	Melon (DHL92) v3.6.1	cpemedB071
Cp4.1LG10g03810	Melon (DHL92) v3.6.1	cpemedB090
Cp4.1LG10g03810	Silver-seed gourd	carcpeB0337
Cp4.1LG10g03810	Silver-seed gourd	carcpeB0348
Cp4.1LG10g03810	Silver-seed gourd	carcpeB1128
Cp4.1LG10g03810	Cucumber (Chinese Long) v3	cpecucB0093
Cp4.1LG10g03810	Wax gourd	cpewgoB0101