CmoCh03G011120.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh03G011120.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr03 : 8958894 .. 8959301 (-)
Sequence length	369

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAGCGGCCGGAGATGAAGGTGCCGACCTTGAATCGGACGCGACCGTCGATTTTGATGGACAACAAGACGGTGCCGACGGCCTGGTCTTGATTGAGAGCGGCGCCGTTGTAGGGAGAGATCGGAACGGCGTTACCAACGACGAACGGTGACCAGATGTTGATGTCGTTGTGGCCTTGATAGTTAGGTTGAATGACGGTACGGAGAGTGATCTGTTGGTTCCGGTAGACGGCGTAGACATCGAGGCGGTCGTAGTAGATTCCGATCTTGTCGTTAGGGTTCCGGGAGGAGATGGTGACTTGGATACTGGAGGAGATAAAATTAGCGGCGCTGACGTTGAAGAGGAAGACGGTGGCGTCTTGGATGATGAATTTGGGCTTCGTCGGCTGAAGAATGGCCCAAATTAA

mRNA sequence

ATGGTAGCGGCCGGAGATGAAGGTGCCGACCTTGAATCGGACGCGACCGTCGATTTTGATGGACAACAAGACGGTGCCGACGGCCTGGTCTTGATTGAGAGCGGCGCCGTTGTAGGGAGAGATCGGAACGGCGTTACCAACGACGAACGGTTGAATGACGGTACGGAGAGTGATCTGTTGGTTCCGGTAGACGGCGTAGACATCGAGGCGGTCGTAGTAGATTCCGATCTTGTCGTTAGGGTTCCGGGAGGAGATGGTGACTTGGATACTGGAGGAGATAAAATTAGCGGCGCTGACGTTGAAGAGGAAGACGGTGGCGTCTTGGATGATGAATTTGGGCTTCGTCGGCTGAAGAATGGCCCAAATTAA

Coding sequence (CDS)

ATGGTAGCGGCCGGAGATGAAGGTGCCGACCTTGAATCGGACGCGACCGTCGATTTTGATGGACAACAAGACGGTGCCGACGGCCTGGTCTTGATTGAGAGCGGCGCCGTTGTAGGGAGAGATCGGAACGGCGTTACCAACGACGAACGGTTGAATGACGGTACGGAGAGTGATCTGTTGGTTCCGGTAGACGGCGTAGACATCGAGGCGGTCGTAGTAGATTCCGATCTTGTCGTTAGGGTTCCGGGAGGAGATGGTGACTTGGATACTGGAGGAGATAAAATTAGCGGCGCTGACGTTGAAGAGGAAGACGGTGGCGTCTTGGATGATGAATTTGGGCTTCGTCGGCTGAAGAATGGCCCAAATTAA

Homology

[Close]

BLAST of CmoCh03G011120.1 vs. TrEMBL
Match: A0A0A0KKM0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G454480 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 6.3e-38
Identity = 91/135 (67.41%), Postives = 105/135 (77.78%), Query Frame = 1


Query: 1   MVAAGDEGADLESDATVDFDGQQDGADGLVLIESGAVVGRDRNGVTNDER---------- 60
           MVAAGDEG D ESDA V+F+GQ DG +GL+LI+ GAVVGRD N VT++E           
Sbjct: 1   MVAAGDEGTDFESDAAVEFNGQLDGTNGLILIKGGAVVGRDGNVVTDEEGRPDVDIVVAL 60

Query: 61  ---LNDGTESDLLVPVDGVDIEAVVVDSDLVVRVPGGDGDLDTGGDKISGADVEEEDGGV 120
              LN GTESDLLV V+GVD+EAVV+DSDLVVRV G DGDLDTGGD++SG ++EE DGGV
Sbjct: 61  VGWLNAGTESDLLVMVNGVDVEAVVIDSDLVVRVTGIDGDLDTGGDEVSGGEIEEVDGGV 120

Query: 121 LDDEFGLRRLKNGPN 123
           LDDEFGL  LKNGPN
Sbjct: 121 LDDEFGLCGLKNGPN 135

[Close]

BLAST of CmoCh03G011120.1 vs. TrEMBL
Match: A0A162ADF4_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_013438 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.1e-13
Identity = 61/136 (44.85%), Postives = 77/136 (56.62%), Query Frame = 1


Query: 1   MVAAGDEGADLESDATVDFDGQQDGADGLVLIESGAVVGRDRN-GVTNDERLN------- 60
           M+    EG++  S  ++  D QQ    GLVL +   VV R R+ G  N  R +       
Sbjct: 56  MIPTRSEGSNFPSHPSIHLDHQQYVPAGLVLAQRHPVVRRHRDVGAVNKRRPDVGVFVAL 115

Query: 61  ----DGTE-SDLLVPVDGVDIEAVVVDSDLVVRVPGGDGDLDTGGDKI-SGADVEEEDGG 120
               DG E SDLL PV G D+E VVVDSD  V V G DGDL+ GG+++  G DVE  DGG
Sbjct: 116 VGGEDGGEVSDLLAPVGGEDVELVVVDSDFAVGVSGSDGDLEVGGEEVGDGGDVEGVDGG 175

Query: 121 VLDDEFGLRRLKNGPN 123
           VL+ E GL  L+NGP+
Sbjct: 176 VLEGEAGLFGLENGPD 191

[Close]

BLAST of CmoCh03G011120.1 vs. TrEMBL
Match: A0A0A0LE53_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G780520 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.2e-13
Identity = 56/135 (41.48%), Postives = 75/135 (55.56%), Query Frame = 1


Query: 1   MVAAGDEGADLESDATVDFDGQQDGADGLVLIESGAVVGRDRNGVTNDER---------- 60
           +V   DE +DL S+  V+FD +   +   VLI+     GRDR+G   DER          
Sbjct: 9   LVPPSDEASDLPSNLAVNFDQEHQCSGVPVLIQLRTDEGRDRHGGAGDERGPYVDVLMAL 68

Query: 61  ---LNDGTESDLLVPVDGVDIEAVVVDSDLVVRVPGGDGDLDTGGDKISGADVEEEDGGV 120
               +DG ESDLLV VDGVD+E VVVDSD  V V GG+ + + GG++     VE  DG V
Sbjct: 69  VETRDDGPESDLLVSVDGVDVEFVVVDSDSAVWVAGGNSEEEIGGEEAGDGGVEGVDGDV 128

Query: 121 LDDEFGLRRLKNGPN 123
           L +E G    ++GP+
Sbjct: 129 LKEESGFGGTEDGPD 143

[Close]

BLAST of CmoCh03G011120.1 vs. TrEMBL
Match: A0A0L9TTU3_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan02g014300 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.9e-10
Identity = 55/124 (44.35%), Postives = 67/124 (54.03%), Query Frame = 1


Query: 1   MVAAGDEGADLESDATVDFDGQQDGADGLVLIESGAVVGRDRN-GVTNDERLN------- 60
           +VAAGDEGADL +D  V  DG +DG   LVL E+  V G D + G  +  R N       
Sbjct: 45  VVAAGDEGADLPADPAVSSDGDEDGTRSLVLAEALEVEGCDGDVGAVDKRRPNVDLFVAL 104

Query: 61  -----DGTESDLLVPVDGVDIEAVVVDSDLVVRVPGGDGDLDTGGDKISGADVEEEDGGV 112
                 G E  LL  V  V  EAVVVDSD+VVRV G + DL+TG  ++    VE  +G V
Sbjct: 105 IGGRDGGAEGHLLALVSDVGFEAVVVDSDVVVRVAGDERDLETGCQEVGDGGVEGVNGDV 164

[Close]

BLAST of CmoCh03G011120.1 vs. TrEMBL
Match: B7ZYJ5_MAIZE (Uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.2e-06
Identity = 51/135 (37.78%), Postives = 68/135 (50.37%), Query Frame = 1


Query: 1   MVAAGDEGADLESDATVDFDGQQDGADGLVLIESGAVVGRDRNGVTNDE---------RL 60
           +V AGDEG  L +D  VD DG +     LVL E G  VGR R+    +E         RL
Sbjct: 74  VVVAGDEGPGLPADPAVDADGDEQVPRRLVLCERGGEVGRQRDVGGGEEGRPDGGVVGRL 133

Query: 61  NDGTES----DLLVPVDGVDIEAVVVDSDLVVRVPGGDGDLDTGGDKISGADVEEEDGGV 120
            +G +     DL  PV GV + AVVVD+D VV V      L   G+   GADV+  D  V
Sbjct: 134 EEGRQRGGHRDLHRPVLGVHVGAVVVDADAVVGVARRQRGLHGDGEVGGGADVDAHDAHV 193

Query: 121 LDDEFGLRRLKNGPN 123
           +++E  L   ++ P+
Sbjct: 194 VEEEARLGGAEDEPD 208

[Close]

BLAST of CmoCh03G011120.1 vs. NCBI nr
Match: gi|700193097|gb|KGN48301.1| (hypothetical protein Csa_6G454480 [Cucumis sativus])

HSP 1 Score: 164.9 bits (416), Expect = 9.1e-38
Identity = 91/135 (67.41%), Postives = 105/135 (77.78%), Query Frame = 1


Query: 1   MVAAGDEGADLESDATVDFDGQQDGADGLVLIESGAVVGRDRNGVTNDER---------- 60
           MVAAGDEG D ESDA V+F+GQ DG +GL+LI+ GAVVGRD N VT++E           
Sbjct: 1   MVAAGDEGTDFESDAAVEFNGQLDGTNGLILIKGGAVVGRDGNVVTDEEGRPDVDIVVAL 60

Query: 61  ---LNDGTESDLLVPVDGVDIEAVVVDSDLVVRVPGGDGDLDTGGDKISGADVEEEDGGV 120
              LN GTESDLLV V+GVD+EAVV+DSDLVVRV G DGDLDTGGD++SG ++EE DGGV
Sbjct: 61  VGWLNAGTESDLLVMVNGVDVEAVVIDSDLVVRVTGIDGDLDTGGDEVSGGEIEEVDGGV 120

Query: 121 LDDEFGLRRLKNGPN 123
           LDDEFGL  LKNGPN
Sbjct: 121 LDDEFGLCGLKNGPN 135

[Close]

BLAST of CmoCh03G011120.1 vs. NCBI nr
Match: gi|1021041419|gb|KZM99200.1| (hypothetical protein DCAR_013438 [Daucus carota subsp. sativus])

HSP 1 Score: 84.3 bits (207), Expect = 1.6e-13
Identity = 61/136 (44.85%), Postives = 77/136 (56.62%), Query Frame = 1


Query: 1   MVAAGDEGADLESDATVDFDGQQDGADGLVLIESGAVVGRDRN-GVTNDERLN------- 60
           M+    EG++  S  ++  D QQ    GLVL +   VV R R+ G  N  R +       
Sbjct: 56  MIPTRSEGSNFPSHPSIHLDHQQYVPAGLVLAQRHPVVRRHRDVGAVNKRRPDVGVFVAL 115

Query: 61  ----DGTE-SDLLVPVDGVDIEAVVVDSDLVVRVPGGDGDLDTGGDKI-SGADVEEEDGG 120
               DG E SDLL PV G D+E VVVDSD  V V G DGDL+ GG+++  G DVE  DGG
Sbjct: 116 VGGEDGGEVSDLLAPVGGEDVELVVVDSDFAVGVSGSDGDLEVGGEEVGDGGDVEGVDGG 175

Query: 121 VLDDEFGLRRLKNGPN 123
           VL+ E GL  L+NGP+
Sbjct: 176 VLEGEAGLFGLENGPD 191

[Close]

BLAST of CmoCh03G011120.1 vs. NCBI nr
Match: gi|700204066|gb|KGN59199.1| (hypothetical protein Csa_3G780520 [Cucumis sativus])

HSP 1 Score: 82.8 bits (203), Expect = 4.6e-13
Identity = 56/135 (41.48%), Postives = 75/135 (55.56%), Query Frame = 1


Query: 1   MVAAGDEGADLESDATVDFDGQQDGADGLVLIESGAVVGRDRNGVTNDER---------- 60
           +V   DE +DL S+  V+FD +   +   VLI+     GRDR+G   DER          
Sbjct: 9   LVPPSDEASDLPSNLAVNFDQEHQCSGVPVLIQLRTDEGRDRHGGAGDERGPYVDVLMAL 68

Query: 61  ---LNDGTESDLLVPVDGVDIEAVVVDSDLVVRVPGGDGDLDTGGDKISGADVEEEDGGV 120
               +DG ESDLLV VDGVD+E VVVDSD  V V GG+ + + GG++     VE  DG V
Sbjct: 69  VETRDDGPESDLLVSVDGVDVEFVVVDSDSAVWVAGGNSEEEIGGEEAGDGGVEGVDGDV 128

Query: 121 LDDEFGLRRLKNGPN 123
           L +E G    ++GP+
Sbjct: 129 LKEESGFGGTEDGPD 143

[Close]

BLAST of CmoCh03G011120.1 vs. NCBI nr
Match: gi|920690768|gb|KOM33993.1| (hypothetical protein LR48_Vigan02g014300 [Vigna angularis])

HSP 1 Score: 73.6 bits (179), Expect = 2.8e-10
Identity = 55/124 (44.35%), Postives = 67/124 (54.03%), Query Frame = 1


Query: 1   MVAAGDEGADLESDATVDFDGQQDGADGLVLIESGAVVGRDRN-GVTNDERLN------- 60
           +VAAGDEGADL +D  V  DG +DG   LVL E+  V G D + G  +  R N       
Sbjct: 45  VVAAGDEGADLPADPAVSSDGDEDGTRSLVLAEALEVEGCDGDVGAVDKRRPNVDLFVAL 104

Query: 61  -----DGTESDLLVPVDGVDIEAVVVDSDLVVRVPGGDGDLDTGGDKISGADVEEEDGGV 112
                 G E  LL  V  V  EAVVVDSD+VVRV G + DL+TG  ++    VE  +G V
Sbjct: 105 IGGRDGGAEGHLLALVSDVGFEAVVVDSDVVVRVAGDERDLETGCQEVGDGGVEGVNGDV 164

[Close]

BLAST of CmoCh03G011120.1 vs. NCBI nr
Match: gi|219885239|gb|ACL52994.1| (unknown [Zea mays])

HSP 1 Score: 60.1 bits (144), Expect = 3.2e-06
Identity = 51/135 (37.78%), Postives = 68/135 (50.37%), Query Frame = 1


Query: 1   MVAAGDEGADLESDATVDFDGQQDGADGLVLIESGAVVGRDRNGVTNDE---------RL 60
           +V AGDEG  L +D  VD DG +     LVL E G  VGR R+    +E         RL
Sbjct: 74  VVVAGDEGPGLPADPAVDADGDEQVPRRLVLCERGGEVGRQRDVGGGEEGRPDGGVVGRL 133

Query: 61  NDGTES----DLLVPVDGVDIEAVVVDSDLVVRVPGGDGDLDTGGDKISGADVEEEDGGV 120
            +G +     DL  PV GV + AVVVD+D VV V      L   G+   GADV+  D  V
Sbjct: 134 EEGRQRGGHRDLHRPVLGVHVGAVVVDADAVVGVARRQRGLHGDGEVGGGADVDAHDAHV 193

Query: 121 LDDEFGLRRLKNGPN 123
           +++E  L   ++ P+
Sbjct: 194 VEEEARLGGAEDEPD 208

The following BLAST results are available for this feature:

BLAST of CmoCh03G011120.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh03G011120.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KKM0_CUCSA	6.3e-38	67.41	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G454480 PE=4 SV=1	[more]
A0A162ADF4_DAUCA	1.1e-13	44.85	Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_013438 PE=4 SV=1	[more]
A0A0A0LE53_CUCSA	3.2e-13	41.48	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G780520 PE=4 SV=1	[more]
A0A0L9TTU3_PHAAN	1.9e-10	44.35	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan02g014300 PE=4 SV=1	[more]
B7ZYJ5_MAIZE	2.2e-06	37.78	Uncharacterized protein OS=Zea mays PE=2 SV=1	[more]

BLAST of CmoCh03G011120.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh03G011120.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700193097\|gb\|KGN48301.1\|	9.1e-38	67.41	hypothetical protein Csa_6G454480 [Cucumis sativus]	[more]
gi\|1021041419\|gb\|KZM99200.1\|	1.6e-13	44.85	hypothetical protein DCAR_013438 [Daucus carota subsp. sativus]	[more]
gi\|700204066\|gb\|KGN59199.1\|	4.6e-13	41.48	hypothetical protein Csa_3G780520 [Cucumis sativus]	[more]
gi\|920690768\|gb\|KOM33993.1\|	2.8e-10	44.35	hypothetical protein LR48_Vigan02g014300 [Vigna angularis]	[more]
gi\|219885239\|gb\|ACL52994.1\|	3.2e-06	37.78	unknown [Zea mays]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh03G011120	CmoCh03G011120	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh03G011120.1	CmoCh03G011120.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh03G011120.1.CDS.2	CmoCh03G011120.1.CDS.2	CDS
CmoCh03G011120.1.CDS.1	CmoCh03G011120.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh03G011120.1.exon.2	CmoCh03G011120.1.exon.2	exon
CmoCh03G011120.1.exon.1	CmoCh03G011120.1.exon.1	exon