CmaCh03G011220 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh03G011220
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUnknown protein
LocationCma_Chr03 : 7635343 .. 7635750 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAGCGGCCGGAGATGAAGGTGCCGACCTTGAATCGGACGCGACCGTCGATTTTGATGGACAACAAGACGGTGCCGACGGCCTGGTCTTGATTGAGAGCGGCGCCGTTGTAGGGAGAGATCGGAACGGCGTTACCGACGACGAACGGTGACCAGATGTTGATGTCGTTGTGGCCTTGATAGTTAGGTTGAATGACGGTACGGAGAGTGATCTGTTGGTTCCGGTAGACGGCGTAGACATCGAGGCGGTCGTAGTAGATTCCGATCTTGTCGTTAGGGTTCCGGGAGGAGATGGTGACTTGGATACTGGAGGAGATAAAATTAGCGGCGGTGACGTTGAAGAGGAAGACGGTGGCGTCTTGGATGATGAATTTGGGCTTTGTCGGCTGAAGAATGGCCCAAATTAA

mRNA sequence

ATGGTAGCGGCCGGAGATGAAGGTGCCGACCTTGAATCGGACGCGACCGTCGATTTTGATGGACAACAAGACGGTGCCGACGGCCTGGTCTTGATTGAGAGCGGCGCCGTTGTAGGGAGAGATCGGAACGGCGTTACCGACGACGAACGGTTGAATGACGGTACGGAGAGTGATCTGTTGGTTCCGGTAGACGGCGTAGACATCGAGGCGGTCGTAGTAGATTCCGATCTTGTCGTTAGGGTTCCGGGAGGAGATGGTGACTTGGATACTGGAGGAGATAAAATTAGCGGCGGTGACGTTGAAGAGGAAGACGGTGGCGTCTTGGATGATGAATTTGGGCTTTGTCGGCTGAAGAATGGCCCAAATTAA

Coding sequence (CDS)

ATGGTAGCGGCCGGAGATGAAGGTGCCGACCTTGAATCGGACGCGACCGTCGATTTTGATGGACAACAAGACGGTGCCGACGGCCTGGTCTTGATTGAGAGCGGCGCCGTTGTAGGGAGAGATCGGAACGGCGTTACCGACGACGAACGGTTGAATGACGGTACGGAGAGTGATCTGTTGGTTCCGGTAGACGGCGTAGACATCGAGGCGGTCGTAGTAGATTCCGATCTTGTCGTTAGGGTTCCGGGAGGAGATGGTGACTTGGATACTGGAGGAGATAAAATTAGCGGCGGTGACGTTGAAGAGGAAGACGGTGGCGTCTTGGATGATGAATTTGGGCTTTGTCGGCTGAAGAATGGCCCAAATTAA

Protein sequence

MVAAGDEGADLESDATVDFDGQQDGADGLVLIESGAVVGRDRNGVTDDERLNDGTESDLLVPVDGVDIEAVVVDSDLVVRVPGGDGDLDTGGDKISGGDVEEEDGGVLDDEFGLCRLKNGPN
Homology
[Close]
BLAST of CmaCh03G011220 vs. TrEMBL
Match: A0A0A0KKM0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G454480 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 1.8e-40
Identity = 94/135 (69.63%), Postives = 107/135 (79.26%), Query Frame = 1 

Query: 1   MVAAGDEGADLESDATVDFDGQQDGADGLVLIESGAVVGRDRNGVTDDER---------- 60
           MVAAGDEG D ESDA V+F+GQ DG +GL+LI+ GAVVGRD N VTD+E           
Sbjct: 1   MVAAGDEGTDFESDAAVEFNGQLDGTNGLILIKGGAVVGRDGNVVTDEEGRPDVDIVVAL 60

Query: 61  ---LNDGTESDLLVPVDGVDIEAVVVDSDLVVRVPGGDGDLDTGGDKISGGDVEEEDGGV 120
              LN GTESDLLV V+GVD+EAVV+DSDLVVRV G DGDLDTGGD++SGG++EE DGGV
Sbjct: 61  VGWLNAGTESDLLVMVNGVDVEAVVIDSDLVVRVTGIDGDLDTGGDEVSGGEIEEVDGGV 120

Query: 121 LDDEFGLCRLKNGPN 123
           LDDEFGLC LKNGPN
Sbjct: 121 LDDEFGLCGLKNGPN 135

[Close]
BLAST of CmaCh03G011220 vs. TrEMBL
Match: A0A162ADF4_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_013438 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 6.4e-14
Identity = 59/136 (43.38%), Postives = 76/136 (55.88%), Query Frame = 1 

Query: 1   MVAAGDEGADLESDATVDFDGQQDGADGLVLIESGAVVGRDRNGVTDDERLND------- 60
           M+    EG++  S  ++  D QQ    GLVL +   VV R R+    ++R  D       
Sbjct: 56  MIPTRSEGSNFPSHPSIHLDHQQYVPAGLVLAQRHPVVRRHRDVGAVNKRRPDVGVFVAL 115

Query: 61  ------GTESDLLVPVDGVDIEAVVVDSDLVVRVPGGDGDLDTGGDKI-SGGDVEEEDGG 120
                 G  SDLL PV G D+E VVVDSD  V V G DGDL+ GG+++  GGDVE  DGG
Sbjct: 116 VGGEDGGEVSDLLAPVGGEDVELVVVDSDFAVGVSGSDGDLEVGGEEVGDGGDVEGVDGG 175

Query: 121 VLDDEFGLCRLKNGPN 123
           VL+ E GL  L+NGP+
Sbjct: 176 VLEGEAGLFGLENGPD 191

[Close]
BLAST of CmaCh03G011220 vs. TrEMBL
Match: A0A0A0LE53_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G780520 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.4e-13
Identity = 57/135 (42.22%), Postives = 76/135 (56.30%), Query Frame = 1 

Query: 1   MVAAGDEGADLESDATVDFDGQQDGADGLVLIESGAVVGRDRNGVTDDER---------- 60
           +V   DE +DL S+  V+FD +   +   VLI+     GRDR+G   DER          
Sbjct: 9   LVPPSDEASDLPSNLAVNFDQEHQCSGVPVLIQLRTDEGRDRHGGAGDERGPYVDVLMAL 68

Query: 61  ---LNDGTESDLLVPVDGVDIEAVVVDSDLVVRVPGGDGDLDTGGDKISGGDVEEEDGGV 120
               +DG ESDLLV VDGVD+E VVVDSD  V V GG+ + + GG++   G VE  DG V
Sbjct: 69  VETRDDGPESDLLVSVDGVDVEFVVVDSDSAVWVAGGNSEEEIGGEEAGDGGVEGVDGDV 128

Query: 121 LDDEFGLCRLKNGPN 123
           L +E G    ++GP+
Sbjct: 129 LKEESGFGGTEDGPD 143

[Close]
BLAST of CmaCh03G011220 vs. TrEMBL
Match: A0A0L9TTU3_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan02g014300 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.7e-11
Identity = 57/124 (45.97%), Postives = 68/124 (54.84%), Query Frame = 1 

Query: 1   MVAAGDEGADLESDATVDFDGQQDGADGLVLIESGAVVGRDRN-GVTDDERLN------- 60
           +VAAGDEGADL +D  V  DG +DG   LVL E+  V G D + G  D  R N       
Sbjct: 45  VVAAGDEGADLPADPAVSSDGDEDGTRSLVLAEALEVEGCDGDVGAVDKRRPNVDLFVAL 104

Query: 61  -----DGTESDLLVPVDGVDIEAVVVDSDLVVRVPGGDGDLDTGGDKISGGDVEEEDGGV 112
                 G E  LL  V  V  EAVVVDSD+VVRV G + DL+TG  ++  G VE  +G V
Sbjct: 105 IGGRDGGAEGHLLALVSDVGFEAVVVDSDVVVRVAGDERDLETGCQEVGDGGVEGVNGDV 164

[Close]
BLAST of CmaCh03G011220 vs. NCBI nr
Match: gi|700193097|gb|KGN48301.1| (hypothetical protein Csa_6G454480 [Cucumis sativus])

HSP 1 Score: 173.3 bits (438), Expect = 2.6e-40
Identity = 94/135 (69.63%), Postives = 107/135 (79.26%), Query Frame = 1 

Query: 1   MVAAGDEGADLESDATVDFDGQQDGADGLVLIESGAVVGRDRNGVTDDER---------- 60
           MVAAGDEG D ESDA V+F+GQ DG +GL+LI+ GAVVGRD N VTD+E           
Sbjct: 1   MVAAGDEGTDFESDAAVEFNGQLDGTNGLILIKGGAVVGRDGNVVTDEEGRPDVDIVVAL 60

Query: 61  ---LNDGTESDLLVPVDGVDIEAVVVDSDLVVRVPGGDGDLDTGGDKISGGDVEEEDGGV 120
              LN GTESDLLV V+GVD+EAVV+DSDLVVRV G DGDLDTGGD++SGG++EE DGGV
Sbjct: 61  VGWLNAGTESDLLVMVNGVDVEAVVIDSDLVVRVTGIDGDLDTGGDEVSGGEIEEVDGGV 120

Query: 121 LDDEFGLCRLKNGPN 123
           LDDEFGLC LKNGPN
Sbjct: 121 LDDEFGLCGLKNGPN 135

[Close]
BLAST of CmaCh03G011220 vs. NCBI nr
Match: gi|1021041419|gb|KZM99200.1| (hypothetical protein DCAR_013438 [Daucus carota subsp. sativus])

HSP 1 Score: 85.1 bits (209), Expect = 9.2e-14
Identity = 59/136 (43.38%), Postives = 76/136 (55.88%), Query Frame = 1 

Query: 1   MVAAGDEGADLESDATVDFDGQQDGADGLVLIESGAVVGRDRNGVTDDERLND------- 60
           M+    EG++  S  ++  D QQ    GLVL +   VV R R+    ++R  D       
Sbjct: 56  MIPTRSEGSNFPSHPSIHLDHQQYVPAGLVLAQRHPVVRRHRDVGAVNKRRPDVGVFVAL 115

Query: 61  ------GTESDLLVPVDGVDIEAVVVDSDLVVRVPGGDGDLDTGGDKI-SGGDVEEEDGG 120
                 G  SDLL PV G D+E VVVDSD  V V G DGDL+ GG+++  GGDVE  DGG
Sbjct: 116 VGGEDGGEVSDLLAPVGGEDVELVVVDSDFAVGVSGSDGDLEVGGEEVGDGGDVEGVDGG 175

Query: 121 VLDDEFGLCRLKNGPN 123
           VL+ E GL  L+NGP+
Sbjct: 176 VLEGEAGLFGLENGPD 191

[Close]
BLAST of CmaCh03G011220 vs. NCBI nr
Match: gi|700204066|gb|KGN59199.1| (hypothetical protein Csa_3G780520 [Cucumis sativus])

HSP 1 Score: 84.0 bits (206), Expect = 2.0e-13
Identity = 57/135 (42.22%), Postives = 76/135 (56.30%), Query Frame = 1 

Query: 1   MVAAGDEGADLESDATVDFDGQQDGADGLVLIESGAVVGRDRNGVTDDER---------- 60
           +V   DE +DL S+  V+FD +   +   VLI+     GRDR+G   DER          
Sbjct: 9   LVPPSDEASDLPSNLAVNFDQEHQCSGVPVLIQLRTDEGRDRHGGAGDERGPYVDVLMAL 68

Query: 61  ---LNDGTESDLLVPVDGVDIEAVVVDSDLVVRVPGGDGDLDTGGDKISGGDVEEEDGGV 120
               +DG ESDLLV VDGVD+E VVVDSD  V V GG+ + + GG++   G VE  DG V
Sbjct: 69  VETRDDGPESDLLVSVDGVDVEFVVVDSDSAVWVAGGNSEEEIGGEEAGDGGVEGVDGDV 128

Query: 121 LDDEFGLCRLKNGPN 123
           L +E G    ++GP+
Sbjct: 129 LKEESGFGGTEDGPD 143

[Close]
BLAST of CmaCh03G011220 vs. NCBI nr
Match: gi|920690768|gb|KOM33993.1| (hypothetical protein LR48_Vigan02g014300 [Vigna angularis])

HSP 1 Score: 77.0 bits (188), Expect = 2.5e-11
Identity = 57/124 (45.97%), Postives = 68/124 (54.84%), Query Frame = 1 

Query: 1   MVAAGDEGADLESDATVDFDGQQDGADGLVLIESGAVVGRDRN-GVTDDERLN------- 60
           +VAAGDEGADL +D  V  DG +DG   LVL E+  V G D + G  D  R N       
Sbjct: 45  VVAAGDEGADLPADPAVSSDGDEDGTRSLVLAEALEVEGCDGDVGAVDKRRPNVDLFVAL 104

Query: 61  -----DGTESDLLVPVDGVDIEAVVVDSDLVVRVPGGDGDLDTGGDKISGGDVEEEDGGV 112
                 G E  LL  V  V  EAVVVDSD+VVRV G + DL+TG  ++  G VE  +G V
Sbjct: 105 IGGRDGGAEGHLLALVSDVGFEAVVVDSDVVVRVAGDERDLETGCQEVGDGGVEGVNGDV 164

The following BLAST results are available for this feature:
BLAST of CmaCh03G011220 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh03G011220 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KKM0_CUCSA1.8e-4069.63Uncharacterized protein OS=Cucumis sativus GN=Csa_6G454480 PE=4 SV=1[more]
A0A162ADF4_DAUCA6.4e-1443.38Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_013438 PE=4 SV=1[more]
A0A0A0LE53_CUCSA1.4e-1342.22Uncharacterized protein OS=Cucumis sativus GN=Csa_3G780520 PE=4 SV=1[more]
A0A0L9TTU3_PHAAN1.7e-1145.97Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan02g014300 PE=4 SV=1[more]
BLAST of CmaCh03G011220 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh03G011220 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700193097|gb|KGN48301.1|2.6e-4069.63hypothetical protein Csa_6G454480 [Cucumis sativus][more]
gi|1021041419|gb|KZM99200.1|9.2e-1443.38hypothetical protein DCAR_013438 [Daucus carota subsp. sativus][more]
gi|700204066|gb|KGN59199.1|2.0e-1342.22hypothetical protein Csa_3G780520 [Cucumis sativus][more]
gi|920690768|gb|KOM33993.1|2.5e-1145.97hypothetical protein LR48_Vigan02g014300 [Vigna angularis][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh03G011220.1CmaCh03G011220.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh03G011220Csa6G454480Cucumber (Chinese Long) v2cmacuB681
CmaCh03G011220ClCG01G014970Watermelon (Charleston Gray)cmawcgB579
CmaCh03G011220CmoCh03G011120Cucurbita moschata (Rifu)cmacmoB653
CmaCh03G011220Cp4.1LG10g03810Cucurbita pepo (Zucchini)cmacpeB656
CmaCh03G011220Cp4.1LG19g04840Cucurbita pepo (Zucchini)cmacpeB671
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh03G011220Cucurbita pepo (Zucchini)cmacpeB681
CmaCh03G011220Cucurbita pepo (Zucchini)cmacpeB689
CmaCh03G011220Bottle gourd (USVL1VR-Ls)cmalsiB594
CmaCh03G011220Bottle gourd (USVL1VR-Ls)cmalsiB597
CmaCh03G011220Bottle gourd (USVL1VR-Ls)cmalsiB609
CmaCh03G011220Cucumber (Gy14) v2cgybcmaB406
CmaCh03G011220Cucumber (Gy14) v2cgybcmaB831
CmaCh03G011220Melon (DHL92) v3.6.1cmamedB684
CmaCh03G011220Melon (DHL92) v3.6.1cmamedB695
CmaCh03G011220Silver-seed gourdcarcmaB0333
CmaCh03G011220Silver-seed gourdcarcmaB1125
CmaCh03G011220Silver-seed gourdcarcmaB1269
CmaCh03G011220Cucumber (Chinese Long) v3cmacucB0788
CmaCh03G011220Cucumber (Chinese Long) v3cmacucB0810
CmaCh03G011220Watermelon (97103) v2cmawmbB670
CmaCh03G011220Watermelon (97103) v2cmawmbB671
CmaCh03G011220Watermelon (97103) v2cmawmbB680
CmaCh03G011220Wax gourdcmawgoB0775
CmaCh03G011220Wax gourdcmawgoB0792
CmaCh03G011220Cucurbita maxima (Rimu)cmacmaB270
CmaCh03G011220Cucurbita maxima (Rimu)cmacmaB498
CmaCh03G011220Cucurbita maxima (Rimu)cmacmaB521
CmaCh03G011220Cucurbita maxima (Rimu)cmacmaB523
CmaCh03G011220Cucumber (Gy14) v1cgycmaB0153
CmaCh03G011220Cucumber (Gy14) v1cgycmaB0680
CmaCh03G011220Cucurbita moschata (Rifu)cmacmoB651
CmaCh03G011220Cucurbita moschata (Rifu)cmacmoB665
CmaCh03G011220Cucurbita moschata (Rifu)cmacmoB667
CmaCh03G011220Wild cucumber (PI 183967)cmacpiB667
CmaCh03G011220Wild cucumber (PI 183967)cmacpiB689
CmaCh03G011220Melon (DHL92) v3.5.1cmameB600
CmaCh03G011220Melon (DHL92) v3.5.1cmameB609
CmaCh03G011220Watermelon (Charleston Gray)cmawcgB570
CmaCh03G011220Watermelon (Charleston Gray)cmawcgB582
CmaCh03G011220Watermelon (97103) v1cmawmB612
CmaCh03G011220Watermelon (97103) v1cmawmB629
CmaCh03G011220Watermelon (97103) v1cmawmB645