CmoCh03G007180 (gene) Cucurbita moschata (Rifu)

NameCmoCh03G007180
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionExpressed protein
LocationCmo_Chr03 : 6199994 .. 6200582 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATAAAAGCAACTCCACCAGTCGAAGTGCTCACTTCTCAGCACATGGAAGCGACCAGTCTCCACCGATTTCTGGCGTCTAAACCGCCGCTCTTGACCATCGATCCACATAAATTCTCCCCTACATCTCAGAATCAGGTATTCTTTCTATCTCTACGCCATCAACAGCCTCTCAGGATCAAACCGATCAACGCCACGGACACCGATGGCGACAGCGCGCCACCGCAGGTTCCACCGGCAATAACGCCTCCGGAGACGGTTGATGTTCGGTTTCGGAAGAGGTCGAGAAGACGATCGAAACAGGAGAGCGAGGATGGAGCGGCGATGGGGAATGTGGGGGCGAGAAAGGCGCCGGTGGAGATTGCTTCCAAGAAGCCGAAGAAATGGGAGGAGATGGACTTGGCGGAGAAGGCGACGGAGCTGTATATGGGAGAGAAGGGTTTGTTGTTTTGGCTAAACAAGTTTGCTTATGCTTCCATTTTTATCATGATTGGTGGTTGGATTGTGTTCCGATTTGTTGGGCCTTCGCTCAATCTTTACCAGTTGGATACTCCACCATTATCTCCGACTTCCATTTTCAAGGGCTGA

mRNA sequence

ATGGATAAAAGCAACTCCACCAGTCGAAGTGCTCACTTCTCAGCACATGGAAGCGACCAGTCTCCACCGATTTCTGGCGTATTCTTTCTATCTCTACGCCATCAACAGCCTCTCAGGATCAAACCGATCAACGCCACGGACACCGATGGCGACAGCGCGCCACCGCAGGTTCCACCGGCAATAACGCCTCCGGAGACGGTTGATGTTCGGTTTCGGAAGAGGTCGAGAAGACGATCGAAACAGGAGAGCGAGGATGGAGCGGCGATGGGGAATGTGGGGGCGAGAAAGGCGCCGGTGGAGATTGCTTCCAAGAAGCCGAAGAAATGGGAGGAGATGGACTTGGCGGAGAAGGCGACGGAGCTGTATATGGGAGAGAAGGGTTTGTTGTTTTGGCTAAACAAGTTTGCTTATGCTTCCATTTTTATCATGATTGGTGGTTGGATTGTGTTCCGATTTGTTGGGCCTTCGCTCAATCTTTACCAGTTGGATACTCCACCATTATCTCCGACTTCCATTTTCAAGGGCTGA

Coding sequence (CDS)

ATGGATAAAAGCAACTCCACCAGTCGAAGTGCTCACTTCTCAGCACATGGAAGCGACCAGTCTCCACCGATTTCTGGCGTATTCTTTCTATCTCTACGCCATCAACAGCCTCTCAGGATCAAACCGATCAACGCCACGGACACCGATGGCGACAGCGCGCCACCGCAGGTTCCACCGGCAATAACGCCTCCGGAGACGGTTGATGTTCGGTTTCGGAAGAGGTCGAGAAGACGATCGAAACAGGAGAGCGAGGATGGAGCGGCGATGGGGAATGTGGGGGCGAGAAAGGCGCCGGTGGAGATTGCTTCCAAGAAGCCGAAGAAATGGGAGGAGATGGACTTGGCGGAGAAGGCGACGGAGCTGTATATGGGAGAGAAGGGTTTGTTGTTTTGGCTAAACAAGTTTGCTTATGCTTCCATTTTTATCATGATTGGTGGTTGGATTGTGTTCCGATTTGTTGGGCCTTCGCTCAATCTTTACCAGTTGGATACTCCACCATTATCTCCGACTTCCATTTTCAAGGGCTGA
BLAST of CmoCh03G007180 vs. TrEMBL
Match: A0A0A0KME2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G505840 PE=4 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 2.3e-65
Identity = 125/149 (83.89%), Postives = 134/149 (89.93%), Query Frame = 1

Query: 27  VFFLSLRHQQPLRIKPINATDTDGDSAPPQVPPAITPPETVDVRFRKRSRRRSKQESEDG 86
           +FF +LRHQ+PLRIKPINAT TDGD+APPQVPP ITPPETV+VRFRKRSRRRSKQE EDG
Sbjct: 47  IFFPTLRHQRPLRIKPINATGTDGDTAPPQVPPEITPPETVEVRFRKRSRRRSKQEREDG 106

Query: 87  AAMGNVGARKAPVEIASKKPKKWEEMDLAEKATELYMGEKGLLFWLNKFAYASIFIMIGG 146
           AAMGN   RKA  E+ S K KKWEEM +AEK  E+YMGEKGLLFWLNKFAYASIFIMIGG
Sbjct: 107 AAMGNGRPRKAAAEVGSSKTKKWEEMSVAEKTMEVYMGEKGLLFWLNKFAYASIFIMIGG 166

Query: 147 WIVFRFVGPSLNLYQLDTPPLSPTSIFKG 176
           WIVFRFVGPSLNLYQLDTPPLSPTS+FKG
Sbjct: 167 WIVFRFVGPSLNLYQLDTPPLSPTSVFKG 195

BLAST of CmoCh03G007180 vs. TrEMBL
Match: B9MXH0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s11710g PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.1e-40
Identity = 88/144 (61.11%), Postives = 112/144 (77.78%), Query Frame = 1

Query: 32  LRHQQPLRIKPINATDTDGDSAPPQVPPAITPPETVDVRFRKRSRRRSKQESEDGAAMGN 91
           LR Q+ LR+   N+T +D ++ P   PP ITPP+TV++RF++ SRRR++ +  DG     
Sbjct: 43  LRRQRSLRLNATNSTSSD-ETPPAAQPPTITPPDTVEIRFKRGSRRRTRMQKGDGG---- 102

Query: 92  VGARKAPVEIASKKPKKWEEMDLAEKATELYMGEKGLLFWLNKFAYASIFIMIGGWIVFR 151
           VG  + PV+  +  PKKWE+M L+EKA ELY+GEKG+LFWLNKFAYASIFI+IGGWI+FR
Sbjct: 103 VGVSQ-PVKAQASAPKKWEDMSLSEKAIELYVGEKGMLFWLNKFAYASIFIVIGGWILFR 162

Query: 152 FVGPSLNLYQLDTPPLSPTSIFKG 176
           FVGPSLNLYQLDT PLSP+SI KG
Sbjct: 163 FVGPSLNLYQLDTAPLSPSSILKG 180

BLAST of CmoCh03G007180 vs. TrEMBL
Match: B9SXL8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0017380 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 3.7e-39
Identity = 84/132 (63.64%), Postives = 102/132 (77.27%), Query Frame = 1

Query: 44  NATDTDGDSAPPQVPPAITPPETVDVRFRKRSRRRSKQESEDGAAMGNVGARKAPVEIAS 103
           N T+ + D+ P   PP ITPPE +++RFR+RS++R+KQ+ E G   G     +AP     
Sbjct: 51  NGTEANEDT-PQVAPPTITPPEPMEIRFRRRSKKRNKQQREGGVGRGQSAKAQAP----- 110

Query: 104 KKPKKWEEMDLAEKATELYMGEKGLLFWLNKFAYASIFIMIGGWIVFRFVGPSLNLYQLD 163
             PKKWE+M LAEKA ELYMGEKG+LFWLNKFAYASIFI+IGGWI+FRFVGPSLNLYQLD
Sbjct: 111 DPPKKWEDMSLAEKALELYMGEKGILFWLNKFAYASIFIVIGGWILFRFVGPSLNLYQLD 170

Query: 164 TPPLSPTSIFKG 176
           T PL P+S+FKG
Sbjct: 171 TQPLPPSSMFKG 176

BLAST of CmoCh03G007180 vs. TrEMBL
Match: V4RVF1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026620mg PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 2.4e-38
Identity = 87/143 (60.84%), Postives = 109/143 (76.22%), Query Frame = 1

Query: 36  QPLRIKPINATD-TDGDSAPPQVPPAITPPETVDVRFRKRSRR-RSKQESEDGAAMGNVG 95
           +P+R++PI++T  +  + AP  VPP ITPP+TV++RFR+ SRR R ++E          G
Sbjct: 37  RPIRLRPISSTSGSSSNDAPQPVPPPITPPDTVEIRFRRGSRRQRQRREGR--------G 96

Query: 96  ARKAPVEI-ASKKPKKWEEMDLAEKATELYMGEKGLLFWLNKFAYASIFIMIGGWIVFRF 155
             K P+E  AS  PKKWE+M L+EKA +LYMGEKGLLFWLNKFAYASIFI IG WI+FRF
Sbjct: 97  REKQPLETQASATPKKWEDMSLSEKAMDLYMGEKGLLFWLNKFAYASIFITIGAWILFRF 156

Query: 156 VGPSLNLYQLDTPPLSPTSIFKG 176
           VGPSLNLYQLD  PLSP+++FKG
Sbjct: 157 VGPSLNLYQLDAAPLSPSNMFKG 171

BLAST of CmoCh03G007180 vs. TrEMBL
Match: W9SCS4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_026693 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 7.0e-38
Identity = 91/158 (57.59%), Postives = 114/158 (72.15%), Query Frame = 1

Query: 30  LSLRHQQPLRIKPINATDT----------DGDSAP-PQVPPAITPPETVDVRFRKRSRRR 89
           L  RH+ PL+  PI+++ +          + D+ P PQ+ P   PPETV+VRFR+RSRRR
Sbjct: 31  LPSRHRPPLKFSPISSSSSSNNANESSVSESDNLPRPQITP---PPETVEVRFRRRSRRR 90

Query: 90  SKQESEDGAAMGNVG-ARKAPVEIASKKPKKWEEMDLAEKATELYMGEKGLLFWLNKFAY 149
           S Q+ +D      +  A +APV+      KKWE+M++AEKA  LY+GEKGLLFWLNKFAY
Sbjct: 91  SNQQRDDKKGDRRLAKAEQAPVQ------KKWEDMNVAEKAMALYVGEKGLLFWLNKFAY 150

Query: 150 ASIFIMIGGWIVFRFVGPSLNLYQLDTPPLSPTSIFKG 176
           ASIFI+IGGWI FRFVGPSLNLYQLD+PPLSP S+FKG
Sbjct: 151 ASIFIVIGGWIFFRFVGPSLNLYQLDSPPLSPDSMFKG 179

BLAST of CmoCh03G007180 vs. TAIR10
Match: AT2G17972.1 (AT2G17972.1 unknown protein)

HSP 1 Score: 134.4 bits (337), Expect = 6.7e-32
Identity = 75/143 (52.45%), Postives = 93/143 (65.03%), Query Frame = 1

Query: 34  HQQPLRIKPINATDTDGDSAPPQVPPAITPP-ETVDVRFRKRSRRRSKQESEDGAAMGNV 93
           H+   R   IN  ++ GD         IT P + V++RF++ SRR+ ++E   G   G  
Sbjct: 29  HRSNRRTLSINCVNSGGDEEK------ITQPLDGVEIRFKRGSRRKMREEGS-GEGGGQS 88

Query: 94  GARKAPVEIASKKPKKWEEMDLAEKATELYMGEKGLLFWLNKFAYASIFIMIGGWIVFRF 153
           G +K  V+      K WEEM L EKA ELY+GEKGLLFWLNK AYASI+I+IGGWI FRF
Sbjct: 89  GKKKETVQ------KPWEEMTLNEKALELYVGEKGLLFWLNKLAYASIYIVIGGWIFFRF 148

Query: 154 VGPSLNLYQLDTPPLSPTSIFKG 176
           VGP+ NLYQLDTPPL P +I KG
Sbjct: 149 VGPAFNLYQLDTPPLDPKNILKG 158

BLAST of CmoCh03G007180 vs. NCBI nr
Match: gi|659080474|ref|XP_008440811.1| (PREDICTED: uncharacterized protein LOC103485119 [Cucumis melo])

HSP 1 Score: 258.1 bits (658), Expect = 1.1e-65
Identity = 127/149 (85.23%), Postives = 136/149 (91.28%), Query Frame = 1

Query: 27  VFFLSLRHQQPLRIKPINATDTDGDSAPPQVPPAITPPETVDVRFRKRSRRRSKQESEDG 86
           +FF SLR Q+PLRIKPINATDTDGD+APPQVPP ITPPETV+VRFRKRSRRRSK+E EDG
Sbjct: 32  IFFPSLRQQRPLRIKPINATDTDGDTAPPQVPPEITPPETVEVRFRKRSRRRSKREREDG 91

Query: 87  AAMGNVGARKAPVEIASKKPKKWEEMDLAEKATELYMGEKGLLFWLNKFAYASIFIMIGG 146
           AAMGN   RKA VE++S K KKWEEM + EKA ELYMGEKGLLFWLNKFAYASIFIMIGG
Sbjct: 92  AAMGNGRPRKAAVEVSSGKAKKWEEMSVVEKAMELYMGEKGLLFWLNKFAYASIFIMIGG 151

Query: 147 WIVFRFVGPSLNLYQLDTPPLSPTSIFKG 176
           WIVFRFVGPSLNLYQLDTPPLSPTS+FKG
Sbjct: 152 WIVFRFVGPSLNLYQLDTPPLSPTSVFKG 180

BLAST of CmoCh03G007180 vs. NCBI nr
Match: gi|449434492|ref|XP_004135030.1| (PREDICTED: uncharacterized protein LOC101202736 [Cucumis sativus])

HSP 1 Score: 256.5 bits (654), Expect = 3.3e-65
Identity = 125/149 (83.89%), Postives = 134/149 (89.93%), Query Frame = 1

Query: 27  VFFLSLRHQQPLRIKPINATDTDGDSAPPQVPPAITPPETVDVRFRKRSRRRSKQESEDG 86
           +FF +LRHQ+PLRIKPINAT TDGD+APPQVPP ITPPETV+VRFRKRSRRRSKQE EDG
Sbjct: 47  IFFPTLRHQRPLRIKPINATGTDGDTAPPQVPPEITPPETVEVRFRKRSRRRSKQEREDG 106

Query: 87  AAMGNVGARKAPVEIASKKPKKWEEMDLAEKATELYMGEKGLLFWLNKFAYASIFIMIGG 146
           AAMGN   RKA  E+ S K KKWEEM +AEK  E+YMGEKGLLFWLNKFAYASIFIMIGG
Sbjct: 107 AAMGNGRPRKAAAEVGSSKTKKWEEMSVAEKTMEVYMGEKGLLFWLNKFAYASIFIMIGG 166

Query: 147 WIVFRFVGPSLNLYQLDTPPLSPTSIFKG 176
           WIVFRFVGPSLNLYQLDTPPLSPTS+FKG
Sbjct: 167 WIVFRFVGPSLNLYQLDTPPLSPTSVFKG 195

BLAST of CmoCh03G007180 vs. NCBI nr
Match: gi|566170851|ref|XP_006383116.1| (hypothetical protein POPTR_0005s11710g [Populus trichocarpa])

HSP 1 Score: 174.5 bits (441), Expect = 1.6e-40
Identity = 88/144 (61.11%), Postives = 112/144 (77.78%), Query Frame = 1

Query: 32  LRHQQPLRIKPINATDTDGDSAPPQVPPAITPPETVDVRFRKRSRRRSKQESEDGAAMGN 91
           LR Q+ LR+   N+T +D ++ P   PP ITPP+TV++RF++ SRRR++ +  DG     
Sbjct: 43  LRRQRSLRLNATNSTSSD-ETPPAAQPPTITPPDTVEIRFKRGSRRRTRMQKGDGG---- 102

Query: 92  VGARKAPVEIASKKPKKWEEMDLAEKATELYMGEKGLLFWLNKFAYASIFIMIGGWIVFR 151
           VG  + PV+  +  PKKWE+M L+EKA ELY+GEKG+LFWLNKFAYASIFI+IGGWI+FR
Sbjct: 103 VGVSQ-PVKAQASAPKKWEDMSLSEKAIELYVGEKGMLFWLNKFAYASIFIVIGGWILFR 162

Query: 152 FVGPSLNLYQLDTPPLSPTSIFKG 176
           FVGPSLNLYQLDT PLSP+SI KG
Sbjct: 163 FVGPSLNLYQLDTAPLSPSSILKG 180

BLAST of CmoCh03G007180 vs. NCBI nr
Match: gi|743899830|ref|XP_011043206.1| (PREDICTED: uncharacterized protein LOC105138730 [Populus euphratica])

HSP 1 Score: 174.5 bits (441), Expect = 1.6e-40
Identity = 88/144 (61.11%), Postives = 112/144 (77.78%), Query Frame = 1

Query: 32  LRHQQPLRIKPINATDTDGDSAPPQVPPAITPPETVDVRFRKRSRRRSKQESEDGAAMGN 91
           LR Q+ LR+   N+T +D ++ P   PP ITPP+TV++RF++ SRRR++ +  DG     
Sbjct: 43  LRRQRSLRLNATNSTSSD-ETPPAAQPPTITPPDTVEIRFKRGSRRRTRMQKGDGG---- 102

Query: 92  VGARKAPVEIASKKPKKWEEMDLAEKATELYMGEKGLLFWLNKFAYASIFIMIGGWIVFR 151
           VG  + PV+  +  PKKWE+M L+EKA ELY+GEKG+LFWLNKFAYASIFI+IGGWI+FR
Sbjct: 103 VGVSQ-PVKAQASAPKKWEDMSLSEKAIELYVGEKGMLFWLNKFAYASIFIVIGGWILFR 162

Query: 152 FVGPSLNLYQLDTPPLSPTSIFKG 176
           FVGPSLNLYQLDT PLSP+SI KG
Sbjct: 163 FVGPSLNLYQLDTAPLSPSSILKG 180

BLAST of CmoCh03G007180 vs. NCBI nr
Match: gi|1009144230|ref|XP_015889684.1| (PREDICTED: uncharacterized protein LOC107424405 [Ziziphus jujuba])

HSP 1 Score: 170.6 bits (431), Expect = 2.4e-39
Identity = 92/149 (61.74%), Postives = 112/149 (75.17%), Query Frame = 1

Query: 35  QQPLRIKPI-------NATDTDGDS-APPQVPPAITPPETVDVRFRKRSRRRSKQESEDG 94
           ++PL+I PI       N TD D  S + PQ PP +TPPETV++RFR+RSR RS+++ EDG
Sbjct: 36  RRPLKITPIFSKTTTSNGTDPDSISNSAPQSPP-VTPPETVEIRFRRRSRGRSRKQREDG 95

Query: 95  AAMGNVGARKAPVEIASKKPKKWEEMDLAEKATELYMGEKGLLFWLNKFAYASIFIMIGG 154
              G V   K+       K +KWE+M +AEKA E+YMGEKGLLFWLNKFAYASIFIMIG 
Sbjct: 96  NGDGRVTKAKSAAAAPPVK-RKWEDMSVAEKAVEVYMGEKGLLFWLNKFAYASIFIMIGA 155

Query: 155 WIVFRFVGPSLNLYQLDTPPLSPTSIFKG 176
           WI+FRFVGP+LNLYQLD+ PLSP+SIFKG
Sbjct: 156 WILFRFVGPALNLYQLDSAPLSPSSIFKG 182

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KME2_CUCSA2.3e-6583.89Uncharacterized protein OS=Cucumis sativus GN=Csa_6G505840 PE=4 SV=1[more]
B9MXH0_POPTR1.1e-4061.11Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s11710g PE=4 SV=1[more]
B9SXL8_RICCO3.7e-3963.64Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0017380 PE=4 SV=1[more]
V4RVF1_9ROSI2.4e-3860.84Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026620mg PE=4 SV=1[more]
W9SCS4_9ROSA7.0e-3857.59Uncharacterized protein OS=Morus notabilis GN=L484_026693 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G17972.16.7e-3252.45 unknown protein[more]
Match NameE-valueIdentityDescription
gi|659080474|ref|XP_008440811.1|1.1e-6585.23PREDICTED: uncharacterized protein LOC103485119 [Cucumis melo][more]
gi|449434492|ref|XP_004135030.1|3.3e-6583.89PREDICTED: uncharacterized protein LOC101202736 [Cucumis sativus][more]
gi|566170851|ref|XP_006383116.1|1.6e-4061.11hypothetical protein POPTR_0005s11710g [Populus trichocarpa][more]
gi|743899830|ref|XP_011043206.1|1.6e-4061.11PREDICTED: uncharacterized protein LOC105138730 [Populus euphratica][more]
gi|1009144230|ref|XP_015889684.1|2.4e-3961.74PREDICTED: uncharacterized protein LOC107424405 [Ziziphus jujuba][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0016556 mRNA modification
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh03G007180.1CmoCh03G007180.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36347FAMILY NOT NAMEDcoord: 18..175
score: 1.9

The following gene(s) are paralogous to this gene:

None