Carg00597 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg00597
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Monofunctional biosynthetic peptidoglycan transglycosylase
Location	Cucurbita_argyrosperma_scaffold_014 : 519036 .. 519629 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAAAGCAACTCCGCCAGTCGAAGTGCTCACTGCTCAGCAAGAAGCCATGGAAGCGACCAGTCTCCACCGATTTCTGGCGTCTAAACCGCCGCTCTTGACCATCGATCCACATAAATTCTCCCTTACATCTCAGAATCAGGTATTCTTTCTATCTCTACGCCATCAACAGCCTCTCAGGATCAAACCGATCAACGCCACGGACACCGACGGCGACAGCGCGCCACCGCAGGTTCCGCCGACAATAACGCCTCCGGAGACGGTTGATGTTCGGTTTCGGAAGAGGTCGAGAAGACGATCGAAACAGGAGAGCGAGGATGGAGCGGCGATGGGGAATGTGCGGGCGAGAAAGGCGCCGGTGGAGATTGCTTCCAAGAAGCCTAAGAAATGGGAGGAGATGGACTTGGCGGAGAAGGCGACGGAGCTGTATATGGGAGAGAAGGGTTTGTTGTTTTGGCTAAACAAGTTTGCTTATGCTTCCATTTTTATCATGATTGGTGGTTGGATTGTGTTCCGATTTGTTGGGCCTTCGCTCAATCTTTACCAGTTGGATACTCCACCATTATCTCCGACTTCCATTTTCAAGGGCTGA

mRNA sequence

ATGGATAAAGCAACTCCGCCAGTCGAAGTGCTCACTGCTCAGCAAGAAGCCATGGAAGCGACCAGTCTCCACCGATTTCTGGCGTCTAAACCGCCGCTCTTGACCATCGATCCACATAAATTCTCCCTTACATCTCAGAATCAGGTATTCTTTCTATCTCTACGCCATCAACAGCCTCTCAGGATCAAACCGATCAACGCCACGGACACCGACGGCGACAGCGCGCCACCGCAGGTTCCGCCGACAATAACGCCTCCGGAGACGGTTGATGTTCGGTTTCGGAAGAGGTCGAGAAGACGATCGAAACAGGAGAGCGAGGATGGAGCGGCGATGGGGAATGTGCGGGCGAGAAAGGCGCCGGTGGAGATTGCTTCCAAGAAGCCTAAGAAATGGGAGGAGATGGACTTGGCGGAGAAGGCGACGGAGCTGTATATGGGAGAGAAGGGTTTGTTGTTTTGGCTAAACAAGTTTGCTTATGCTTCCATTTTTATCATGATTGGTGGTTGGATTGTGTTCCGATTTGTTGGGCCTTCGCTCAATCTTTACCAGTTGGATACTCCACCATTATCTCCGACTTCCATTTTCAAGGGCTGA

Coding sequence (CDS)

ATGGATAAAGCAACTCCGCCAGTCGAAGTGCTCACTGCTCAGCAAGAAGCCATGGAAGCGACCAGTCTCCACCGATTTCTGGCGTCTAAACCGCCGCTCTTGACCATCGATCCACATAAATTCTCCCTTACATCTCAGAATCAGGTATTCTTTCTATCTCTACGCCATCAACAGCCTCTCAGGATCAAACCGATCAACGCCACGGACACCGACGGCGACAGCGCGCCACCGCAGGTTCCGCCGACAATAACGCCTCCGGAGACGGTTGATGTTCGGTTTCGGAAGAGGTCGAGAAGACGATCGAAACAGGAGAGCGAGGATGGAGCGGCGATGGGGAATGTGCGGGCGAGAAAGGCGCCGGTGGAGATTGCTTCCAAGAAGCCTAAGAAATGGGAGGAGATGGACTTGGCGGAGAAGGCGACGGAGCTGTATATGGGAGAGAAGGGTTTGTTGTTTTGGCTAAACAAGTTTGCTTATGCTTCCATTTTTATCATGATTGGTGGTTGGATTGTGTTCCGATTTGTTGGGCCTTCGCTCAATCTTTACCAGTTGGATACTCCACCATTATCTCCGACTTCCATTTTCAAGGGCTGA

Protein sequence

MDKATPPVEVLTAQQEAMEATSLHRFLASKPPLLTIDPHKFSLTSQNQVFFLSLRHQQPLRIKPINATDTDGDSAPPQVPPTITPPETVDVRFRKRSRRRSKQESEDGAAMGNVRARKAPVEIASKKPKKWEEMDLAEKATELYMGEKGLLFWLNKFAYASIFIMIGGWIVFRFVGPSLNLYQLDTPPLSPTSIFKG

Homology

[Close]

BLAST of Carg00597 vs. NCBI nr
Match: XP_023544554.1 (uncharacterized protein LOC111804097 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 285.8 bits (730), Expect = 1.1e-73
Identity = 179/180 (99.44%), Postives = 179/180 (99.44%), Query Frame = 0


Query: 18  MEATSLHRFLASKPPLLTIDPHKFSLTSQNQVFFLSLRHQQPLRIKPINATDTDGDSAPX 77
           MEATSLHRFLASKPPLLTIDPHKFS TSQNQVFFLSLRHQQPLRIKPINATDTDGDSAPX
Sbjct: 1   MEATSLHRFLASKPPLLTIDPHKFSPTSQNQVFFLSLRHQQPLRIKPINATDTDGDSAPX 60

Query: 78  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAMGNVRARKAPVEIASKKPKKWEEMDLA 137
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAMGNVRARKAPVEIASKKPKKWEEMDLA
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAMGNVRARKAPVEIASKKPKKWEEMDLA 120

Query: 138 EKATELYMGEKGLLFWLNKFAYASIFIMIGGWIVFRFVGPSLNLYQLDTPPLSPTSIFKG 197
           EKATELYMGEKGLLFWLNKFAYASIFIMIGGWIVFRFVGPSLNLYQLDTPPLSPTSIFKG
Sbjct: 121 EKATELYMGEKGLLFWLNKFAYASIFIMIGGWIVFRFVGPSLNLYQLDTPPLSPTSIFKG 180

[Close]

BLAST of Carg00597 vs. NCBI nr
Match: XP_022950633.1 (uncharacterized protein LOC111453672 [Cucurbita moschata])

HSP 1 Score: 283.1 bits (723), Expect = 7.2e-73
Identity = 178/180 (98.89%), Postives = 178/180 (98.89%), Query Frame = 0


Query: 18  MEATSLHRFLASKPPLLTIDPHKFSLTSQNQVFFLSLRHQQPLRIKPINATDTDGDSAPX 77
           MEATSLHRFLASKPPLLTIDPHKFS TSQNQVFFLSLRHQQPLRIKPINATDTDGDSAPX
Sbjct: 1   MEATSLHRFLASKPPLLTIDPHKFSPTSQNQVFFLSLRHQQPLRIKPINATDTDGDSAPX 60

Query: 78  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAMGNVRARKAPVEIASKKPKKWEEMDLA 137
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAMGNV ARKAPVEIASKKPKKWEEMDLA
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAMGNVGARKAPVEIASKKPKKWEEMDLA 120

Query: 138 EKATELYMGEKGLLFWLNKFAYASIFIMIGGWIVFRFVGPSLNLYQLDTPPLSPTSIFKG 197
           EKATELYMGEKGLLFWLNKFAYASIFIMIGGWIVFRFVGPSLNLYQLDTPPLSPTSIFKG
Sbjct: 121 EKATELYMGEKGLLFWLNKFAYASIFIMIGGWIVFRFVGPSLNLYQLDTPPLSPTSIFKG 180

[Close]

BLAST of Carg00597 vs. NCBI nr
Match: XP_022979054.1 (uncharacterized protein LOC111478809 [Cucurbita maxima])

HSP 1 Score: 280.4 bits (716), Expect = 4.7e-72
Identity = 175/180 (97.22%), Postives = 177/180 (98.33%), Query Frame = 0


Query: 18  MEATSLHRFLASKPPLLTIDPHKFSLTSQNQVFFLSLRHQQPLRIKPINATDTDGDSAPX 77
           ME+TSLHRFLAS+PPLLTI PHKFS TSQNQVFFLSLRHQQPLRIKPINATDTDGDSAP 
Sbjct: 1   MESTSLHRFLASEPPLLTIGPHKFSPTSQNQVFFLSLRHQQPLRIKPINATDTDGDSAPP 60

Query: 78  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAMGNVRARKAPVEIASKKPKKWEEMDLA 137
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAMGNVRARKAPVEIASKKPKKWEEMDLA
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAMGNVRARKAPVEIASKKPKKWEEMDLA 120

Query: 138 EKATELYMGEKGLLFWLNKFAYASIFIMIGGWIVFRFVGPSLNLYQLDTPPLSPTSIFKG 197
           EKATELYMGEKGLLFWLNKFAYASIFIMIGGWIVFRFVGPSLNLYQLDTPPLSPTSIFKG
Sbjct: 121 EKATELYMGEKGLLFWLNKFAYASIFIMIGGWIVFRFVGPSLNLYQLDTPPLSPTSIFKG 180

[Close]

BLAST of Carg00597 vs. NCBI nr
Match: XP_004135030.1 (PREDICTED: uncharacterized protein LOC101202736 [Cucumis sativus] >KGN48906.1 hypothetical protein Csa_6G505840 [Cucumis sativus])

HSP 1 Score: 242.3 bits (617), Expect = 1.4e-60
Identity = 155/197 (78.68%), Postives = 167/197 (84.77%), Query Frame = 0


Query: 1   MDKATPPVEVLTAQQEAMEATSLHRFLASKPPLLTIDPHKFSLTSQNQVFFLSLRHQQPL 60
           MDKATP  E    + E ME+ SLH+ LASKPPL TI+P KFS TSQ Q+FF +LRHQ+PL
Sbjct: 1   MDKATPEYE--GRESETMESISLHQILASKPPLSTINPQKFSPTSQIQIFFPTLRHQRPL 60

Query: 61  RIKPINATDTDGDSAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAMGNVRARKAP 120
           RIKPINAT TDGD+AP XXXXXXXXXXXXXXXXXXXXXXXXXXXX   AAMGN R RKA 
Sbjct: 61  RIKPINATGTDGDTAPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDGAAMGNGRPRKAA 120

Query: 121 VEIASKKPKKWEEMDLAEKATELYMGEKGLLFWLNKFAYASIFIMIGGWIVFRFVGPSLN 180
            E+ S K KKWEEM +AEK  E+YMGEKGLLFWLNKFAYASIFIMIGGWIVFRFVGPSLN
Sbjct: 121 AEVGSSKTKKWEEMSVAEKTMEVYMGEKGLLFWLNKFAYASIFIMIGGWIVFRFVGPSLN 180

Query: 181 LYQLDTPPLSPTSIFKG 198
           LYQLDTPPLSPTS+FKG
Sbjct: 181 LYQLDTPPLSPTSVFKG 195

[Close]

BLAST of Carg00597 vs. NCBI nr
Match: XP_023522380.1 (uncharacterized protein LOC111786303, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 239.6 bits (610), Expect = 9.1e-60
Identity = 156/157 (99.36%), Postives = 156/157 (99.36%), Query Frame = 0


Query: 41  FSLTSQNQVFFLSLRHQQPLRIKPINATDTDGDSAPXXXXXXXXXXXXXXXXXXXXXXXX 100
           FS TSQNQVFFLSLRHQQPLRIKPINATDTDGDSAPXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   FSPTSQNQVFFLSLRHQQPLRIKPINATDTDGDSAPXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 101 XXXXXXXXAAMGNVRARKAPVEIASKKPKKWEEMDLAEKATELYMGEKGLLFWLNKFAYA 160
           XXXXXXXXAAMGNVRARKAPVEIASKKPKKWEEMDLAEKATELYMGEKGLLFWLNKFAYA
Sbjct: 61  XXXXXXXXAAMGNVRARKAPVEIASKKPKKWEEMDLAEKATELYMGEKGLLFWLNKFAYA 120

Query: 161 SIFIMIGGWIVFRFVGPSLNLYQLDTPPLSPTSIFKG 198
           SIFIMIGGWIVFRFVGPSLNLYQLDTPPLSPTSIFKG
Sbjct: 121 SIFIMIGGWIVFRFVGPSLNLYQLDTPPLSPTSIFKG 157

[Close]

BLAST of Carg00597 vs. TAIR10
Match: AT2G17972.1 (unknown protein)

HSP 1 Score: 117.9 bits (294), Expect = 7.3e-27
Identity = 54/69 (78.26%), Postives = 59/69 (85.51%), Query Frame = 0


Query: 129 KKWEEMDLAEKATELYMGEKGLLFWLNKFAYASIFIMIGGWIVFRFVGPSLNLYQLDTPP 188
           K WEEM L EKA ELY+GEKGLLFWLNK AYASI+I+IGGWI FRFVGP+ NLYQLDTPP
Sbjct: 90  KPWEEMTLNEKALELYVGEKGLLFWLNKLAYASIYIVIGGWIFFRFVGPAFNLYQLDTPP 149

Query: 189 LSPTSIFKG 198
           L P +I KG
Sbjct: 150 LDPKNILKG 158

[Close]

BLAST of Carg00597 vs. TrEMBL
Match: tr|A0A0A0KME2|A0A0A0KME2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G505840 PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 9.3e-61
Identity = 155/197 (78.68%), Postives = 167/197 (84.77%), Query Frame = 0


Query: 1   MDKATPPVEVLTAQQEAMEATSLHRFLASKPPLLTIDPHKFSLTSQNQVFFLSLRHQQPL 60
           MDKATP  E    + E ME+ SLH+ LASKPPL TI+P KFS TSQ Q+FF +LRHQ+PL
Sbjct: 1   MDKATPEYE--GRESETMESISLHQILASKPPLSTINPQKFSPTSQIQIFFPTLRHQRPL 60

Query: 61  RIKPINATDTDGDSAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAMGNVRARKAP 120
           RIKPINAT TDGD+AP XXXXXXXXXXXXXXXXXXXXXXXXXXXX   AAMGN R RKA 
Sbjct: 61  RIKPINATGTDGDTAPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDGAAMGNGRPRKAA 120

Query: 121 VEIASKKPKKWEEMDLAEKATELYMGEKGLLFWLNKFAYASIFIMIGGWIVFRFVGPSLN 180
            E+ S K KKWEEM +AEK  E+YMGEKGLLFWLNKFAYASIFIMIGGWIVFRFVGPSLN
Sbjct: 121 AEVGSSKTKKWEEMSVAEKTMEVYMGEKGLLFWLNKFAYASIFIMIGGWIVFRFVGPSLN 180

Query: 181 LYQLDTPPLSPTSIFKG 198
           LYQLDTPPLSPTS+FKG
Sbjct: 181 LYQLDTPPLSPTSVFKG 195

[Close]

BLAST of Carg00597 vs. TrEMBL
Match: tr|A0A1S3B215|A0A1S3B215_CUCME (uncharacterized protein LOC103485119 OS=Cucumis melo OX=3656 GN=LOC103485119 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 8.2e-57
Identity = 148/180 (82.22%), Postives = 157/180 (87.22%), Query Frame = 0


Query: 18  MEATSLHRFLASKPPLLTIDPHKFSLTSQNQVFFLSLRHQQPLRIKPINATDTDGDSAPX 77
           ME+ SLH+ LASKPPL TI+P KFS TSQ Q+FF SLR Q+PLRIKPINATDTDG    X
Sbjct: 1   MESISLHQILASKPPLSTINPQKFSRTSQTQIFFPSLRQQRPLRIKPINATDTDGXXXXX 60

Query: 78  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAMGNVRARKAPVEIASKKPKKWEEMDLA 137
           XXXXXXXXXXXXXXXXXXXXXXXXXXXX   AAMGN R RKA VE++S K KKWEEM + 
Sbjct: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXEDGAAMGNGRPRKAAVEVSSGKAKKWEEMSVV 120

Query: 138 EKATELYMGEKGLLFWLNKFAYASIFIMIGGWIVFRFVGPSLNLYQLDTPPLSPTSIFKG 197
           EKA ELYMGEKGLLFWLNKFAYASIFIMIGGWIVFRFVGPSLNLYQLDTPPLSPTS+FKG
Sbjct: 121 EKAMELYMGEKGLLFWLNKFAYASIFIMIGGWIVFRFVGPSLNLYQLDTPPLSPTSVFKG 180

[Close]

BLAST of Carg00597 vs. TrEMBL
Match: tr|B9MXH0|B9MXH0_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_005G115000v3 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 3.2e-29
Identity = 84/186 (45.16%), Postives = 102/186 (54.84%), Query Frame = 0


Query: 21  TSLHRFLASKPPLLTIDPHK---------FSLTSQNQVFFLSLRHQQPLRIKPINATDTD 80
           T++  FL SK P  TI  H           +   QNQ+ F  LR Q+ LR+   N+T + 
Sbjct: 3   TNILPFLPSKSPPSTIPIHSNLSILTPPPATTRIQNQLCF--LRRQRSLRLNATNSTSS- 62

Query: 81  GDSAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAMGNVRARKAPVEIASKKPKKW 140
            D  P                                  +G       PV+  +  PKKW
Sbjct: 63  -DETPPAAQPPTITPPDTVEIRFKRGSRRRTRMQKGDGGVG----VSQPVKAQASAPKKW 122

Query: 141 EEMDLAEKATELYMGEKGLLFWLNKFAYASIFIMIGGWIVFRFVGPSLNLYQLDTPPLSP 198
           E+M L+EKA ELY+GEKG+LFWLNKFAYASIFI+IGGWI+FRFVGPSLNLYQLDT PLSP
Sbjct: 123 EDMSLSEKAIELYVGEKGMLFWLNKFAYASIFIVIGGWILFRFVGPSLNLYQLDTAPLSP 180

[Close]

BLAST of Carg00597 vs. TrEMBL
Match: tr|A0A2P4MNR1|A0A2P4MNR1_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_60533 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 9.4e-29
Identity = 65/83 (78.31%), Postives = 75/83 (90.36%), Query Frame = 0


Query: 115 RARKAPVEIASKKPKKWEEMDLAEKATELYMGEKGLLFWLNKFAYASIFIMIGGWIVFRF 174
           +A KA VE   + PKKWE+M++ EKA ELY+GEKGLLFWLNKFAYASIFI+IGGWI+FRF
Sbjct: 103 QAMKAKVE---EPPKKWEDMNIPEKAIELYVGEKGLLFWLNKFAYASIFIVIGGWILFRF 162

Query: 175 VGPSLNLYQLDTPPLSPTSIFKG 198
           VGPSLNLYQLDTPPLSP+S+FKG
Sbjct: 163 VGPSLNLYQLDTPPLSPSSVFKG 182

[Close]

BLAST of Carg00597 vs. TrEMBL
Match: tr|A0A067LQC1|A0A067LQC1_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_06522 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 2.7e-28
Identity = 60/76 (78.95%), Postives = 69/76 (90.79%), Query Frame = 0


Query: 122 EIASKKPKKWEEMDLAEKATELYMGEKGLLFWLNKFAYASIFIMIGGWIVFRFVGPSLNL 181
           +I    PKKWE+M + EKA ELYMGEKG+LFWLNKFAYASIFI+IGGWI+FRFVGPSLNL
Sbjct: 95  QIIPDPPKKWEDMSITEKAVELYMGEKGMLFWLNKFAYASIFIVIGGWILFRFVGPSLNL 154

Query: 182 YQLDTPPLSPTSIFKG 198
           YQLDTPPL+PT++FKG
Sbjct: 155 YQLDTPPLAPTNMFKG 170

The following BLAST results are available for this feature:

BLAST of Carg00597 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023544554.1	1.1e-73	99.44	uncharacterized protein LOC111804097 [Cucurbita pepo subsp. pepo]	[more]
XP_022950633.1	7.2e-73	98.89	uncharacterized protein LOC111453672 [Cucurbita moschata]	[more]
XP_022979054.1	4.7e-72	97.22	uncharacterized protein LOC111478809 [Cucurbita maxima]	[more]
XP_004135030.1	1.4e-60	78.68	PREDICTED: uncharacterized protein LOC101202736 [Cucumis sativus] >KGN48906.1 hy...	[more]
XP_023522380.1	9.1e-60	99.36	uncharacterized protein LOC111786303, partial [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg00597 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G17972.1	7.3e-27	78.26	unknown protein	[more]

BLAST of Carg00597 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg00597 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KME2\|A0A0A0KME2_CUCSA	9.3e-61	78.68	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G505840 PE=4 SV=1	[more]
tr\|A0A1S3B215\|A0A1S3B215_CUCME	8.2e-57	82.22	uncharacterized protein LOC103485119 OS=Cucumis melo OX=3656 GN=LOC103485119 PE=...	[more]
tr\|B9MXH0\|B9MXH0_POPTR	3.2e-29	45.16	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_005G115000v3 PE=...	[more]
tr\|A0A2P4MNR1\|A0A2P4MNR1_QUESU	9.4e-29	78.31	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_60533 PE=4 SV=1	[more]
tr\|A0A067LQC1\|A0A067LQC1_JATCU	2.7e-28	78.95	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_06522 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg00597-RA	Carg00597-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 89..106
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..116
None	No IPR available	PANTHER	PTHR36347	FAMILY NOT NAMED	coord: 28..197

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg00597	Cla014278	Watermelon (97103) v1	carwmB0407
Carg00597	Csa6G505840	Cucumber (Chinese Long) v2	carcuB0441
Carg00597	MELO3C007896	Melon (DHL92) v3.5.1	carmeB0414
Carg00597	ClCG01G020240	Watermelon (Charleston Gray)	carwcgB0397
Carg00597	CSPI06G31700	Wild cucumber (PI 183967)	carcpiB0446
Carg00597	Cucsa.043500	Cucumber (Gy14) v1	carcgyB0466
Carg00597	CmaCh03G006920	Cucurbita maxima (Rimu)	carcmaB0567
Carg00597	CmoCh03G007180	Cucurbita moschata (Rifu)	carcmoB0551
Carg00597	Lsi01G006080	Bottle gourd (USVL1VR-Ls)	carlsiB364
Carg00597	Cp4.1LG10g00200	Cucurbita pepo (Zucchini)	carcpeB0554
Carg00597	MELO3C007896.2	Melon (DHL92) v3.6.1	carmedB0418
Carg00597	CsaV3_6G047030	Cucumber (Chinese Long) v3	carcucB0442
Carg00597	Bhi03G000648	Wax gourd	carwgoB0488

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg00597	Silver-seed gourd	carcarB121
Carg00597	Silver-seed gourd	carcarB425
Carg00597	Silver-seed gourd	carcarB430
Carg00597	Cucumber (Gy14) v2	carcgybB0412
Carg00597	Cucumber (Gy14) v2	carcgybB0418
Carg00597	Cucurbita maxima (Rimu)	carcmaB0571
Carg00597	Cucurbita moschata (Rifu)	carcmoB0541
Carg00597	Cucurbita moschata (Rifu)	carcmoB0543
Carg00597	Cucurbita moschata (Rifu)	carcmoB0554
Carg00597	Cucurbita pepo (Zucchini)	carcpeB0563
Carg00597	Cucurbita pepo (Zucchini)	carcpeB0569
Carg00597	Cucurbita pepo (Zucchini)	carcpeB0572
Carg00597	Wild cucumber (PI 183967)	carcpiB0439
Carg00597	Cucumber (Chinese Long) v2	carcuB0434
Carg00597	Cucumber (Chinese Long) v3	carcucB0436
Carg00597	Bottle gourd (USVL1VR-Ls)	carlsiB371
Carg00597	Melon (DHL92) v3.5.1	carmeB0404
Carg00597	Melon (DHL92) v3.6.1	carmedB0408
Carg00597	Watermelon (Charleston Gray)	carwcgB0401
Carg00597	Watermelon (97103) v2	carwmbB0426
Carg00597	Watermelon (97103) v2	carwmbB0432