CmoCh03G006700 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh03G006700
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	UPF0548 protein
Location	Cmo_Chr03 : 5971467 .. 5972301 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGTTCATCATTAGGTCTGGTTCCTTCAACTATAGCAGCAAGTTTAGAGGAGCTACTGCTAATCCCAGCTCTTGCCTGCAAGAAGATAAGGGGCTCTCACAAGAAGGGTTTCTTCTCAACCATGCTCGTATTTTGGTGGGTTCTGGTGTTGAGACTTATGAAAAGGGGAAGAAAGCTCTTCAGAACTGGAGGTTTTCTGGCTATATACCTTTTGGTTGAACAGTAACGTATTAGACGAGAATTCTTGGTCTCTTCAACCCAGTGCAAATTTTGCAGGCATTTTGGGTTGAATTGGGCATTTGTTGATTCCTCAACGCCAGTTCATCCGGGAGTGAAGTTTTGTGTCTGTGCCAAGGAGTTCCTTCCATGGGTGGTGATGCCTCTTCAAATTGTATATGTAAATGAGAACAGAGGTACCAATATGGCTAGGACATGTTTCAGTTTTGGCAGTGGTACCCTTCAAGGCCATCTTCTGGTTCGTCCATCATTAATTTGTTTTTTCCAGGCTAATTTTCGTTTGTTCTTCTCTAATTTATATTATTGGGTTTCACTATACTTGTATTAATGTACTTGATAGTTAATATGATCTTGAATTCTCACCATTCCAGGCGGGTGAAGAACGGTTTTCGATCGAGATGGACTCGAACAGCCAGGTGTGGTATGAAATTCTTTCCTTCTCAAAGCCTGCCCACATATTATCATTTCTTAGTTATCCTTATGTAATTCTTCGGCAAAAGTATTTTGCTTATCAATCTACAAATGCAGTTAAGAAATATTTGACTGCCAAGCATTCCTAACTCCTGGTGTGCTTGTGTGTATGTTCTTAGCTATC

mRNA sequence

ATGATGTTCATCATTAGGTCTGGTTCCTTCAACTATAGCAGCAAGTTTAGAGGAGCTACTGCTAATCCCAGCTCTTGCCTGCAAGAAGATAAGGGGCTCTCACAAGAAGGGTTTCTTCTCAACCATGCTCGTATTTTGGTGGGTTCTGGTGTTGAGACTTATGAAAAGGGGAAGAAAGCTCTTCAGAACTGGAGACGAGAATTCTTGGTCTCTTCAACCCAGTGCAAATTTTGCAGGCATTTTGGGTTGAATTGGGCATTTGTTGATTCCTCAACGCCAGTTCATCCGGGAGTGAAGTTTTGTGTCTGTGCCAAGGAGTTCCTTCCATGGGTGGTGATGCCTCTTCAAATTGTATATGTAAATGAGAACAGAGGTACCAATATGGCTAGGACATGTTTCAGTTTTGGCAGTGGTACCCTTCAAGGCCATCTTCTGGCGGGTGAAGAACGGTTTTCGATCGAGATGGACTCGAACAGCCAGGTGTGGTATGAAATTCTTTCCTTCTCAAAGCCTGCCCACATATTATCATTTCTTAGTTATCCTTATGTAATTCTTCGGCAAAAGTATTTTGCTTATCAATCTACAAATGCAGTTAAGAAATATTTGACTGCCAAGCATTCCTAACTCCTGGTGTGCTTGTGTGTATGTTCTTAGCTATC

Coding sequence (CDS)

ATGATGTTCATCATTAGGTCTGGTTCCTTCAACTATAGCAGCAAGTTTAGAGGAGCTACTGCTAATCCCAGCTCTTGCCTGCAAGAAGATAAGGGGCTCTCACAAGAAGGGTTTCTTCTCAACCATGCTCGTATTTTGGTGGGTTCTGGTGTTGAGACTTATGAAAAGGGGAAGAAAGCTCTTCAGAACTGGAGACGAGAATTCTTGGTCTCTTCAACCCAGTGCAAATTTTGCAGGCATTTTGGGTTGAATTGGGCATTTGTTGATTCCTCAACGCCAGTTCATCCGGGAGTGAAGTTTTGTGTCTGTGCCAAGGAGTTCCTTCCATGGGTGGTGATGCCTCTTCAAATTGTATATGTAAATGAGAACAGAGGTACCAATATGGCTAGGACATGTTTCAGTTTTGGCAGTGGTACCCTTCAAGGCCATCTTCTGGCGGGTGAAGAACGGTTTTCGATCGAGATGGACTCGAACAGCCAGGTGTGGTATGAAATTCTTTCCTTCTCAAAGCCTGCCCACATATTATCATTTCTTAGTTATCCTTATGTAATTCTTCGGCAAAAGTATTTTGCTTATCAATCTACAAATGCAGTTAAGAAATATTTGACTGCCAAGCATTCCTAA

Homology

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BLAST of CmoCh03G006700 vs. Swiss-Prot
Match: U548_ARATH (UPF0548 protein At2g17695 OS=Arabidopsis thaliana GN=At2g17695 PE=2 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 1.0e-65
Identity = 117/201 (58.21%), Postives = 151/201 (75.12%), Query Frame = 1


Query: 4   IIRSGSFNYSSKFRGATANPSSCLQEDKGLSQEGFLLNHARILVGSGVETYEKGKKALQN 63
           I ++G+FNY +K+RG ++   + L+ED  + ++GFL+NHAR+LVGSG E+YEKGKKALQN
Sbjct: 18  INKTGTFNYDNKYRGVSSRSIAKLKEDSEIDKDGFLINHARVLVGSGRESYEKGKKALQN 77

Query: 64  WRREFLVSSTQCKFCRHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVMPLQIVYVNEN 123
           W              +HFG++WAFVD +TPV  G KFC+C KE LPWV++PLQ+VYV+E+
Sbjct: 78  W--------------KHFGMDWAFVDPATPVETGKKFCICVKEVLPWVMLPLQVVYVDES 137

Query: 124 RGTNMARTCFSFGSGTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSYPYV 183
           R +      F +GSGTLQGHLLAGEE+FSIE+D N +VWYEI SFSKPAH LSFL YPYV
Sbjct: 138 RKSRKGPAHFGYGSGTLQGHLLAGEEKFSIELDGNGEVWYEITSFSKPAHFLSFLGYPYV 197

Query: 184 ILRQKYFAYQSTNAVKKYLTA 205
            LRQK+FA  S+ AV K++ A
Sbjct: 198 KLRQKHFARHSSEAVLKHVNA 204

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BLAST of CmoCh03G006700 vs. Swiss-Prot
Match: U548_DICDI (UPF0548 protein OS=Dictyostelium discoideum GN=DDB_G0271742 PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.7e-13
Identity = 57/203 (28.08%), Postives = 94/203 (46.31%), Query Frame = 1


Query: 6   RSGSFNYSSKFRGATANPSSCLQEDKGLSQEGFLLNHARILVGSGVETYEKGKKALQNWR 65
           R   F YS+ +   T + ++  + +       F ++  +I +G+GVE ++K   AL+ W+
Sbjct: 20  REEQFAYSNLY--GTQDYATKEEYEMDPKYSNFDVDQVKIQLGTGVECFQKAVAALKQWK 79

Query: 66  REFLVSSTQCKFCRHFGLNWA-FVDSSTPVHPGVKFCVCAKEFLPWVVMPLQIVYVNENR 125
                         HF L+W  F   +TP+  G    + +K+   W++   +I Y+ +  
Sbjct: 80  --------------HFDLDWVDFYFKNTPIAVGETVGILSKQVGFWILSFARINYLYDGD 139

Query: 126 GTNMARTCFSFGSGTLQGHLLAGEERFSIEM-------DSNSQVWYEILSFSKPAHILSF 185
             +     F +  GTL+ H+  GEERF IE             V+YE+LSFS+P++ LS 
Sbjct: 140 QED-GSIKFGYSYGTLKDHVEKGEERFVIEWVRDPDGAPDKGAVYYEMLSFSEPSYWLSQ 199

Query: 186 LSYPYVILRQKYFAYQSTNAVKK 201
           L YP     Q  F   S N + K
Sbjct: 200 LGYPVTRYFQNKFVVDSCNQMLK 205

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BLAST of CmoCh03G006700 vs. Swiss-Prot
Match: Y2035_DEIRA (UPF0548 protein DR_2035 OS=Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) GN=DR_2035 PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 5.7e-08
Identity = 44/148 (29.73%), Postives = 68/148 (45.95%), Query Frame = 1


Query: 44  RILVGSGVETYEKGKKALQNWRREFLVSSTQCKFCRHFGLNWAFVDSSTPV-HPGVKFCV 103
           R+ VG G   +E+ K AL+  +        Q    R  G      ++STP+   G    +
Sbjct: 47  RVRVGEGEACWERAKAALRGGQM------FQDWVLRPHG------EASTPLSRQGATVVL 106

Query: 104 CAKEFLPWVVMPLQIVYVNENRGTNMARTC--FSFGSGTLQGHLLAGEERFSIEMDSNSQ 163
             + F PW      +  +  NR   +      + FG GTL GHL+ GEERF +E D+   
Sbjct: 107 LVRHFGPWGRRKWGLYSLMTNRVLYLVDEPDRYGFGYGTLPGHLVRGEERFLLERDAGGA 166

Query: 164 VWYEILSFSKPAHILSFLSYPYVILRQK 189
           VW+++ +FS+ A   S  + P V   Q+
Sbjct: 167 VWFDLTTFSRAALPFSRFAQPLVGAAQR 182

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BLAST of CmoCh03G006700 vs. TrEMBL
Match: A0A0A0KKV8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G507400 PE=4 SV=1)

HSP 1 Score: 357.1 bits (915), Expect = 1.5e-95
Identity = 177/205 (86.34%), Postives = 183/205 (89.27%), Query Frame = 1


Query: 4   IIRSGSFNYSSKFRGATANPSSCLQEDKG-LSQEGFLLNHARILVGSGVETYEKGKKALQ 63
           I R+GSFNY+SKFRGATANPSSCLQEDKG +SQEGFLLNHARILVGSGV TYEKGKKALQ
Sbjct: 18  IERAGSFNYNSKFRGATANPSSCLQEDKGGISQEGFLLNHARILVGSGVGTYEKGKKALQ 77

Query: 64  NWRREFLVSSTQCKFCRHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVMPLQIVYVNE 123
           NWR              HFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVV+PLQIVYVNE
Sbjct: 78  NWR--------------HFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVLPLQIVYVNE 137

Query: 124 NRGTNMARTCFSFGSGTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSYPY 183
           NR TN  RTCFSFGSGTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSYPY
Sbjct: 138 NRDTNKGRTCFSFGSGTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSYPY 197

Query: 184 VILRQKYFAYQSTNAVKKYLTAKHS 208
           +ILRQKYFA+QSTNAVKKYLT  HS
Sbjct: 198 IILRQKYFAHQSTNAVKKYLTPTHS 208

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BLAST of CmoCh03G006700 vs. TrEMBL
Match: M5W4V4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023767mg PE=4 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 6.9e-77
Identity = 143/204 (70.10%), Postives = 160/204 (78.43%), Query Frame = 1


Query: 4   IIRSGSFNYSSKFRGATANPSSCLQEDKGLSQEGFLLNHARILVGSGVETYEKGKKALQN 63
           I RSGSFNY +KFRGAT    S LQEDKGLS  GFL NHAR+LVGSGV+TYEKGK+ALQ+
Sbjct: 18  IDRSGSFNYEAKFRGATTKSLSSLQEDKGLSNNGFLFNHARVLVGSGVDTYEKGKRALQD 77

Query: 64  WRREFLVSSTQCKFCRHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVMPLQIVYVNEN 123
           WR              HFGLNWAFVD  TPV  GVKFCVC KEFLPWV+MPLQ+VYVNEN
Sbjct: 78  WR--------------HFGLNWAFVDPKTPVQNGVKFCVCVKEFLPWVMMPLQVVYVNEN 137

Query: 124 RGTNMARTCFSFGSGTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSYPYV 183
           R +  +   F FG GTLQGHLLAGEERFSIE+D N+QVWYEILSFSKPAH LSF+ YPYV
Sbjct: 138 RPSKQSMASFRFGGGTLQGHLLAGEERFSIELDENNQVWYEILSFSKPAHPLSFIGYPYV 197

Query: 184 ILRQKYFAYQSTNAVKKYLTAKHS 208
           +LRQKYFA+QS+NA+ K+L A  S
Sbjct: 198 MLRQKYFAHQSSNAIMKHLNALKS 207

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BLAST of CmoCh03G006700 vs. TrEMBL
Match: A0A067FVI3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028245mg PE=4 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 3.2e-74
Identity = 137/201 (68.16%), Postives = 158/201 (78.61%), Query Frame = 1


Query: 4   IIRSGSFNYSSKFRGATANPSSCLQEDKGLSQEGFLLNHARILVGSGVETYEKGKKALQN 63
           I +SG FNY +K++GATA P +CL+ED+GLS++GFLLNHAR+LVGSG+ETYEKGK AL+ 
Sbjct: 23  IDKSGVFNYDTKYKGATAKPVACLKEDQGLSKDGFLLNHARVLVGSGLETYEKGKTALKT 82

Query: 64  WRREFLVSSTQCKFCRHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVMPLQIVYVNEN 123
           W              RHFGLNWAFVD  TP+  GVKFCVC KEFLPWV +PLQIVYVNE+
Sbjct: 83  W--------------RHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYVNES 142

Query: 124 RGTNMARTCFSFGSGTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSYPYV 183
                    F FGSGTLQGHLLAGEERFSIE+D N+QVWYEI+SFSKPA  LSF+ YPYV
Sbjct: 143 IRKKKTAASFGFGSGTLQGHLLAGEERFSIELDDNNQVWYEIVSFSKPADFLSFIGYPYV 202

Query: 184 ILRQKYFAYQSTNAVKKYLTA 205
            LRQKYFA+QS NAVKK+LTA
Sbjct: 203 QLRQKYFAHQSVNAVKKHLTA 209

[Close]

BLAST of CmoCh03G006700 vs. TrEMBL
Match: V4SI89_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026505mg PE=4 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 2.7e-73
Identity = 135/201 (67.16%), Postives = 157/201 (78.11%), Query Frame = 1


Query: 4   IIRSGSFNYSSKFRGATANPSSCLQEDKGLSQEGFLLNHARILVGSGVETYEKGKKALQN 63
           I +SG FNY +K++GATA P +CL+ED+GLS++GFLLNHAR+LVGSG+ETYEKGK AL+ 
Sbjct: 18  IDKSGVFNYDTKYKGATAKPVACLKEDQGLSKDGFLLNHARVLVGSGLETYEKGKTALKT 77

Query: 64  WRREFLVSSTQCKFCRHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVMPLQIVYVNEN 123
           W              RHFGLNWAFVD  TP+  GVKFCVC KEFLPWV +PLQIVYVNE+
Sbjct: 78  W--------------RHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYVNES 137

Query: 124 RGTNMARTCFSFGSGTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSYPYV 183
                    F FGSGTLQGHLLAGEERFS+E+D N+QVWYEI+SFSKPA  LSF+ YPYV
Sbjct: 138 IRKKKTAASFGFGSGTLQGHLLAGEERFSLELDENNQVWYEIVSFSKPADFLSFIGYPYV 197

Query: 184 ILRQKYFAYQSTNAVKKYLTA 205
            LRQKYFA+QS  AVKK+LTA
Sbjct: 198 QLRQKYFAHQSVTAVKKHLTA 204

[Close]

BLAST of CmoCh03G006700 vs. TrEMBL
Match: A0A061DGD7_THECC (UPF0548 protein OS=Theobroma cacao GN=TCM_000110 PE=4 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 6.0e-73
Identity = 134/201 (66.67%), Postives = 158/201 (78.61%), Query Frame = 1


Query: 4   IIRSGSFNYSSKFRGATANPSSCLQEDKGLSQEGFLLNHARILVGSGVETYEKGKKALQN 63
           I +SG+FNY +K++GATA P SC++EDK LS++G+L+NHAR+LVGSG++TYEKGK ALQN
Sbjct: 18  INKSGTFNYDTKYKGATAKPVSCIKEDKELSKDGYLVNHARVLVGSGLQTYEKGKAALQN 77

Query: 64  WRREFLVSSTQCKFCRHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVMPLQIVYVNEN 123
           WR              HFGLNWAFVD  TP+  GVKFCVC KEFLPWV+MPLQ+VYV E+
Sbjct: 78  WR--------------HFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVMMPLQVVYVKES 137

Query: 124 RG--TNMARTCFSFGSGTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSYP 183
           +   T  A   F FGSGTLQGHLLAGEERFSIE+D N QVWYEILSFSKPAH LSF+ YP
Sbjct: 138 KSAKTKKAVASFGFGSGTLQGHLLAGEERFSIELDENDQVWYEILSFSKPAHFLSFIGYP 197

Query: 184 YVILRQKYFAYQSTNAVKKYL 203
           YV LRQKYFA+QS NAV  ++
Sbjct: 198 YVYLRQKYFAHQSANAVLNHV 204

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BLAST of CmoCh03G006700 vs. TAIR10
Match: AT2G17695.1 (AT2G17695.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 251.1 bits (640), Expect = 5.8e-67
Identity = 117/201 (58.21%), Postives = 151/201 (75.12%), Query Frame = 1


Query: 4   IIRSGSFNYSSKFRGATANPSSCLQEDKGLSQEGFLLNHARILVGSGVETYEKGKKALQN 63
           I ++G+FNY +K+RG ++   + L+ED  + ++GFL+NHAR+LVGSG E+YEKGKKALQN
Sbjct: 18  INKTGTFNYDNKYRGVSSRSIAKLKEDSEIDKDGFLINHARVLVGSGRESYEKGKKALQN 77

Query: 64  WRREFLVSSTQCKFCRHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVMPLQIVYVNEN 123
           W              +HFG++WAFVD +TPV  G KFC+C KE LPWV++PLQ+VYV+E+
Sbjct: 78  W--------------KHFGMDWAFVDPATPVETGKKFCICVKEVLPWVMLPLQVVYVDES 137

Query: 124 RGTNMARTCFSFGSGTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSYPYV 183
           R +      F +GSGTLQGHLLAGEE+FSIE+D N +VWYEI SFSKPAH LSFL YPYV
Sbjct: 138 RKSRKGPAHFGYGSGTLQGHLLAGEEKFSIELDGNGEVWYEITSFSKPAHFLSFLGYPYV 197

Query: 184 ILRQKYFAYQSTNAVKKYLTA 205
            LRQK+FA  S+ AV K++ A
Sbjct: 198 KLRQKHFARHSSEAVLKHVNA 204

[Close]

BLAST of CmoCh03G006700 vs. NCBI nr
Match: gi|659080608|ref|XP_008440883.1| (PREDICTED: UPF0548 protein At2g17695 isoform X1 [Cucumis melo])

HSP 1 Score: 362.1 bits (928), Expect = 6.6e-97
Identity = 178/204 (87.25%), Postives = 182/204 (89.22%), Query Frame = 1


Query: 4   IIRSGSFNYSSKFRGATANPSSCLQEDKGLSQEGFLLNHARILVGSGVETYEKGKKALQN 63
           I R+GSFNYSSKFRGATANPSSCLQEDKG+SQEGFLLNHARILVGSGVETYEKGKKALQN
Sbjct: 18  IERAGSFNYSSKFRGATANPSSCLQEDKGISQEGFLLNHARILVGSGVETYEKGKKALQN 77

Query: 64  WRREFLVSSTQCKFCRHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVMPLQIVYVNEN 123
           WR              HFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVV+PLQIVYVNEN
Sbjct: 78  WR--------------HFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVLPLQIVYVNEN 137

Query: 124 RGTNMARTCFSFGSGTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSYPYV 183
           R TN  RTCFSFGSGTLQGHLLAGEERFSIEMDSNSQVWYEILS SKPAHILSFLSYPYV
Sbjct: 138 RNTNKGRTCFSFGSGTLQGHLLAGEERFSIEMDSNSQVWYEILSISKPAHILSFLSYPYV 197

Query: 184 ILRQKYFAYQSTNAVKKYLTAKHS 208
           ILRQKYFA+QSTNA KKYLT  HS
Sbjct: 198 ILRQKYFAHQSTNAFKKYLTPTHS 207

[Close]

BLAST of CmoCh03G006700 vs. NCBI nr
Match: gi|449434104|ref|XP_004134836.1| (PREDICTED: UPF0548 protein At2g17695 [Cucumis sativus])

HSP 1 Score: 357.1 bits (915), Expect = 2.1e-95
Identity = 177/205 (86.34%), Postives = 183/205 (89.27%), Query Frame = 1


Query: 4   IIRSGSFNYSSKFRGATANPSSCLQEDKG-LSQEGFLLNHARILVGSGVETYEKGKKALQ 63
           I R+GSFNY+SKFRGATANPSSCLQEDKG +SQEGFLLNHARILVGSGV TYEKGKKALQ
Sbjct: 18  IERAGSFNYNSKFRGATANPSSCLQEDKGGISQEGFLLNHARILVGSGVGTYEKGKKALQ 77

Query: 64  NWRREFLVSSTQCKFCRHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVMPLQIVYVNE 123
           NWR              HFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVV+PLQIVYVNE
Sbjct: 78  NWR--------------HFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVLPLQIVYVNE 137

Query: 124 NRGTNMARTCFSFGSGTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSYPY 183
           NR TN  RTCFSFGSGTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSYPY
Sbjct: 138 NRDTNKGRTCFSFGSGTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSYPY 197

Query: 184 VILRQKYFAYQSTNAVKKYLTAKHS 208
           +ILRQKYFA+QSTNAVKKYLT  HS
Sbjct: 198 IILRQKYFAHQSTNAVKKYLTPTHS 208

[Close]

BLAST of CmoCh03G006700 vs. NCBI nr
Match: gi|470102636|ref|XP_004287757.1| (PREDICTED: UPF0548 protein At2g17695 [Fragaria vesca subsp. vesca])

HSP 1 Score: 298.1 bits (762), Expect = 1.2e-77
Identity = 142/201 (70.65%), Postives = 161/201 (80.10%), Query Frame = 1


Query: 4   IIRSGSFNYSSKFRGATANPSSCLQEDKGLSQEGFLLNHARILVGSGVETYEKGKKALQN 63
           I RSG FNY +KFRGATA   S LQEDKGLS+ GFL NHAR+LVGSG+ETYEKGK+ALQ+
Sbjct: 18  IDRSGGFNYEAKFRGATAKSLSSLQEDKGLSENGFLCNHARVLVGSGLETYEKGKRALQD 77

Query: 64  WRREFLVSSTQCKFCRHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVMPLQIVYVNEN 123
           WR              HFGLNWAFVD  TPV  GVKFCVC KEFLPWV+MPLQIVYVNEN
Sbjct: 78  WR--------------HFGLNWAFVDPKTPVQNGVKFCVCVKEFLPWVMMPLQIVYVNEN 137

Query: 124 RGTNMARTCFSFGSGTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSYPYV 183
           + +  +   F FG GTLQGHLLAGEERFSIE+D N+QVWYEILSFSKPAH+LSF+ YPYV
Sbjct: 138 KSSKQSMASFRFGGGTLQGHLLAGEERFSIELDENNQVWYEILSFSKPAHVLSFVGYPYV 197

Query: 184 ILRQKYFAYQSTNAVKKYLTA 205
           +LRQ+YFA+ STNA+KK+L A
Sbjct: 198 MLRQRYFAHHSTNAIKKHLNA 204

[Close]

BLAST of CmoCh03G006700 vs. NCBI nr
Match: gi|645273676|ref|XP_008241991.1| (PREDICTED: UPF0548 protein At2g17695 [Prunus mume])

HSP 1 Score: 295.8 bits (756), Expect = 5.8e-77
Identity = 143/202 (70.79%), Postives = 160/202 (79.21%), Query Frame = 1


Query: 6   RSGSFNYSSKFRGATANPSSCLQEDKGLSQEGFLLNHARILVGSGVETYEKGKKALQNWR 65
           RSGSFNY +KFRGATA   S LQEDKGLS  GFL NHAR+LVGSGV+TYEKGK+ALQ+WR
Sbjct: 20  RSGSFNYEAKFRGATAKSLSSLQEDKGLSNNGFLFNHARVLVGSGVDTYEKGKRALQDWR 79

Query: 66  REFLVSSTQCKFCRHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVMPLQIVYVNENRG 125
                         HFGLNWAFVD  TPV  GVKFCVC KEFLPWV+MPLQ+VYVNENR 
Sbjct: 80  --------------HFGLNWAFVDPKTPVQNGVKFCVCVKEFLPWVMMPLQVVYVNENRP 139

Query: 126 TNMARTCFSFGSGTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSYPYVIL 185
           +  +   F FG GTLQGHLLAGEERFSIE+D N+QVWYEILSFSKPAH LSF+ YPYV+L
Sbjct: 140 SKQSMASFRFGGGTLQGHLLAGEERFSIELDENNQVWYEILSFSKPAHPLSFIGYPYVML 199

Query: 186 RQKYFAYQSTNAVKKYLTAKHS 208
           RQKYFA+QS+NA+ K+L A  S
Sbjct: 200 RQKYFAHQSSNAIMKHLNALKS 207

[Close]

BLAST of CmoCh03G006700 vs. NCBI nr
Match: gi|694438231|ref|XP_009346104.1| (PREDICTED: UPF0548 protein At2g17695-like [Pyrus x bretschneideri])

HSP 1 Score: 295.8 bits (756), Expect = 5.8e-77
Identity = 143/204 (70.10%), Postives = 162/204 (79.41%), Query Frame = 1


Query: 4   IIRSGSFNYSSKFRGATANPSSCLQEDKGLSQEGFLLNHARILVGSGVETYEKGKKALQN 63
           I RSGSFNY  KF+GATA   S LQEDKGLS++GFLLNH+R LVGSG++TYEKGK ALQ+
Sbjct: 18  IDRSGSFNYDPKFKGATAKSLSSLQEDKGLSKDGFLLNHSRNLVGSGLDTYEKGKMALQD 77

Query: 64  WRREFLVSSTQCKFCRHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVMPLQIVYVNEN 123
           WR              HFGLNWAFVD  TPV  GVKFCVC KEFLPWV+MPLQ+VYVNEN
Sbjct: 78  WR--------------HFGLNWAFVDPKTPVQNGVKFCVCVKEFLPWVMMPLQVVYVNEN 137

Query: 124 RGTNMARTCFSFGSGTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSYPYV 183
           + +  A   F FG GTLQGHLLAGEERFSIE+D N+QVWYEILSFSKPAH+LSF+ YPYV
Sbjct: 138 KRSKQAMASFRFGGGTLQGHLLAGEERFSIELDENNQVWYEILSFSKPAHLLSFIGYPYV 197

Query: 184 ILRQKYFAYQSTNAVKKYLTAKHS 208
           +LRQKYFA+QSTNA+ K+L A  S
Sbjct: 198 MLRQKYFAHQSTNAIMKHLNASKS 207

The following BLAST results are available for this feature:

BLAST of CmoCh03G006700 vs. Swiss-Prot


Match Name	E-value	Identity	Description
U548_ARATH	1.0e-65	58.21	UPF0548 protein At2g17695 OS=Arabidopsis thaliana GN=At2g17695 PE=2 SV=1	[more]
U548_DICDI	2.7e-13	28.08	UPF0548 protein OS=Dictyostelium discoideum GN=DDB_G0271742 PE=3 SV=1	[more]
Y2035_DEIRA	5.7e-08	29.73	UPF0548 protein DR_2035 OS=Deinococcus radiodurans (strain ATCC 13939 / DSM 2053...	[more]

BLAST of CmoCh03G006700 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KKV8_CUCSA	1.5e-95	86.34	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G507400 PE=4 SV=1	[more]
M5W4V4_PRUPE	6.9e-77	70.10	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023767mg PE=4 SV=1	[more]
A0A067FVI3_CITSI	3.2e-74	68.16	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028245mg PE=4 SV=1	[more]
V4SI89_9ROSI	2.7e-73	67.16	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026505mg PE=4 SV=1	[more]
A0A061DGD7_THECC	6.0e-73	66.67	UPF0548 protein OS=Theobroma cacao GN=TCM_000110 PE=4 SV=1	[more]

BLAST of CmoCh03G006700 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G17695.1	5.8e-67	58.21	FUNCTIONS IN: molecular_function unknown	[more]

BLAST of CmoCh03G006700 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659080608\|ref\|XP_008440883.1\|	6.6e-97	87.25	PREDICTED: UPF0548 protein At2g17695 isoform X1 [Cucumis melo]	[more]
gi\|449434104\|ref\|XP_004134836.1\|	2.1e-95	86.34	PREDICTED: UPF0548 protein At2g17695 [Cucumis sativus]	[more]
gi\|470102636\|ref\|XP_004287757.1\|	1.2e-77	70.65	PREDICTED: UPF0548 protein At2g17695 [Fragaria vesca subsp. vesca]	[more]
gi\|645273676\|ref\|XP_008241991.1\|	5.8e-77	70.79	PREDICTED: UPF0548 protein At2g17695 [Prunus mume]	[more]
gi\|694438231\|ref\|XP_009346104.1\|	5.8e-77	70.10	PREDICTED: UPF0548 protein At2g17695-like [Pyrus x bretschneideri]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR018960	DUF1990

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh03G006700.1	CmoCh03G006700.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018960	Domain of unknown function DUF1990	PFAM	PF09348	DUF1990	coord: 32..196 score: 3.5
None	No IPR available	PANTHER	PTHR34202	FAMILY NOT NAMED	coord: 4..200 score: 4.9
None	No IPR available	PANTHER	PTHR34202:SF1	UPF0548 PROTEIN	coord: 4..200 score: 4.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh03G006700	Cucsa.044030	Cucumber (Gy14) v1	cgycmoB0042
CmoCh03G006700	CmaCh03G006430	Cucurbita maxima (Rimu)	cmacmoB653
CmoCh03G006700	Cla014329	Watermelon (97103) v1	cmowmB623
CmoCh03G006700	Csa6G507400	Cucumber (Chinese Long) v2	cmocuB670
CmoCh03G006700	MELO3C007951	Melon (DHL92) v3.5.1	cmomeB605
CmoCh03G006700	ClCG01G020680	Watermelon (Charleston Gray)	cmowcgB575
CmoCh03G006700	CSPI06G32240	Wild cucumber (PI 183967)	cmocpiB681
CmoCh03G006700	Lsi01G005560	Bottle gourd (USVL1VR-Ls)	cmolsiB582
CmoCh03G006700	MELO3C007951.2	Melon (DHL92) v3.6.1	cmomedB694
CmoCh03G006700	CsaV3_6G047600	Cucumber (Chinese Long) v3	cmocucB0793
CmoCh03G006700	Cla97C01G020180	Watermelon (97103) v2	cmowmbB642
CmoCh03G006700	Bhi03G000591	Wax gourd	cmowgoB0781
CmoCh03G006700	Carg00552	Silver-seed gourd	carcmoB0551

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh03G006700	Cucurbita pepo (Zucchini)	cmocpeB606
CmoCh03G006700	Cucurbita pepo (Zucchini)	cmocpeB608
CmoCh03G006700	Cucurbita pepo (Zucchini)	cmocpeB611
CmoCh03G006700	Cucurbita pepo (Zucchini)	cmocpeB624
CmoCh03G006700	Bottle gourd (USVL1VR-Ls)	cmolsiB605
CmoCh03G006700	Cucumber (Gy14) v2	cgybcmoB380
CmoCh03G006700	Cucumber (Gy14) v2	cgybcmoB811
CmoCh03G006700	Melon (DHL92) v3.6.1	cmomedB682
CmoCh03G006700	Silver-seed gourd	carcmoB0477
CmoCh03G006700	Silver-seed gourd	carcmoB0886
CmoCh03G006700	Cucumber (Chinese Long) v3	cmocucB0769
CmoCh03G006700	Watermelon (97103) v2	cmowmbB645
CmoCh03G006700	Wax gourd	cmowgoB0767
CmoCh03G006700	Cucurbita moschata (Rifu)	cmocmoB417
CmoCh03G006700	Cucurbita moschata (Rifu)	cmocmoB455
CmoCh03G006700	Cucumber (Gy14) v1	cgycmoB0892
CmoCh03G006700	Cucurbita maxima (Rimu)	cmacmoB858
CmoCh03G006700	Wild cucumber (PI 183967)	cmocpiB658
CmoCh03G006700	Cucumber (Chinese Long) v2	cmocuB646
CmoCh03G006700	Melon (DHL92) v3.5.1	cmomeB595
CmoCh03G006700	Watermelon (Charleston Gray)	cmowcgB569
CmoCh03G006700	Watermelon (97103) v1	cmowmB608