CmoCh03G006700.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh03G006700.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	UPF0548 protein
Location	Cmo_Chr03 : 5971467 .. 5972301 (-)
Sequence length	659

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGTTCATCATTAGGTCTGGTTCCTTCAACTATAGCAGCAAGTTTAGAGGAGCTACTGCTAATCCCAGCTCTTGCCTGCAAGAAGATAAGGGGCTCTCACAAGAAGGGTTTCTTCTCAACCATGCTCGTATTTTGGTGGGTTCTGGTGTTGAGACTTATGAAAAGGGGAAGAAAGCTCTTCAGAACTGGAGGTTTTCTGGCTATATACCTTTTGGTTGAACAGTAACGTATTAGACGAGAATTCTTGGTCTCTTCAACCCAGTGCAAATTTTGCAGGCATTTTGGGTTGAATTGGGCATTTGTTGATTCCTCAACGCCAGTTCATCCGGGAGTGAAGTTTTGTGTCTGTGCCAAGGAGTTCCTTCCATGGGTGGTGATGCCTCTTCAAATTGTATATGTAAATGAGAACAGAGGTACCAATATGGCTAGGACATGTTTCAGTTTTGGCAGTGGTACCCTTCAAGGCCATCTTCTGGTTCGTCCATCATTAATTTGTTTTTTCCAGGCTAATTTTCGTTTGTTCTTCTCTAATTTATATTATTGGGTTTCACTATACTTGTATTAATGTACTTGATAGTTAATATGATCTTGAATTCTCACCATTCCAGGCGGGTGAAGAACGGTTTTCGATCGAGATGGACTCGAACAGCCAGGTGTGGTATGAAATTCTTTCCTTCTCAAAGCCTGCCCACATATTATCATTTCTTAGTTATCCTTATGTAATTCTTCGGCAAAAGTATTTTGCTTATCAATCTACAAATGCAGTTAAGAAATATTTGACTGCCAAGCATTCCTAACTCCTGGTGTGCTTGTGTGTATGTTCTTAGCTATC

mRNA sequence

ATGATGTTCATCATTAGGTCTGGTTCCTTCAACTATAGCAGCAAGTTTAGAGGAGCTACTGCTAATCCCAGCTCTTGCCTGCAAGAAGATAAGGGGCTCTCACAAGAAGGGTTTCTTCTCAACCATGCTCGTATTTTGGTGGGTTCTGGTGTTGAGACTTATGAAAAGGGGAAGAAAGCTCTTCAGAACTGGAGACGAGAATTCTTGGTCTCTTCAACCCAGTGCAAATTTTGCAGGCATTTTGGGTTGAATTGGGCATTTGTTGATTCCTCAACGCCAGTTCATCCGGGAGTGAAGTTTTGTGTCTGTGCCAAGGAGTTCCTTCCATGGGTGGTGATGCCTCTTCAAATTGTATATGTAAATGAGAACAGAGGTACCAATATGGCTAGGACATGTTTCAGTTTTGGCAGTGGTACCCTTCAAGGCCATCTTCTGGCGGGTGAAGAACGGTTTTCGATCGAGATGGACTCGAACAGCCAGGTGTGGTATGAAATTCTTTCCTTCTCAAAGCCTGCCCACATATTATCATTTCTTAGTTATCCTTATGTAATTCTTCGGCAAAAGTATTTTGCTTATCAATCTACAAATGCAGTTAAGAAATATTTGACTGCCAAGCATTCCTAACTCCTGGTGTGCTTGTGTGTATGTTCTTAGCTATC

Coding sequence (CDS)

ATGATGTTCATCATTAGGTCTGGTTCCTTCAACTATAGCAGCAAGTTTAGAGGAGCTACTGCTAATCCCAGCTCTTGCCTGCAAGAAGATAAGGGGCTCTCACAAGAAGGGTTTCTTCTCAACCATGCTCGTATTTTGGTGGGTTCTGGTGTTGAGACTTATGAAAAGGGGAAGAAAGCTCTTCAGAACTGGAGACGAGAATTCTTGGTCTCTTCAACCCAGTGCAAATTTTGCAGGCATTTTGGGTTGAATTGGGCATTTGTTGATTCCTCAACGCCAGTTCATCCGGGAGTGAAGTTTTGTGTCTGTGCCAAGGAGTTCCTTCCATGGGTGGTGATGCCTCTTCAAATTGTATATGTAAATGAGAACAGAGGTACCAATATGGCTAGGACATGTTTCAGTTTTGGCAGTGGTACCCTTCAAGGCCATCTTCTGGCGGGTGAAGAACGGTTTTCGATCGAGATGGACTCGAACAGCCAGGTGTGGTATGAAATTCTTTCCTTCTCAAAGCCTGCCCACATATTATCATTTCTTAGTTATCCTTATGTAATTCTTCGGCAAAAGTATTTTGCTTATCAATCTACAAATGCAGTTAAGAAATATTTGACTGCCAAGCATTCCTAA

Homology

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BLAST of CmoCh03G006700.1 vs. Swiss-Prot
Match: U548_ARATH (UPF0548 protein At2g17695 OS=Arabidopsis thaliana GN=At2g17695 PE=2 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 1.0e-65
Identity = 117/201 (58.21%), Postives = 151/201 (75.12%), Query Frame = 1


Query: 4   IIRSGSFNYSSKFRGATANPSSCLQEDKGLSQEGFLLNHARILVGSGVETYEKGKKALQN 63
           I ++G+FNY +K+RG ++   + L+ED  + ++GFL+NHAR+LVGSG E+YEKGKKALQN
Sbjct: 18  INKTGTFNYDNKYRGVSSRSIAKLKEDSEIDKDGFLINHARVLVGSGRESYEKGKKALQN 77

Query: 64  WRREFLVSSTQCKFCRHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVMPLQIVYVNEN 123
           W              +HFG++WAFVD +TPV  G KFC+C KE LPWV++PLQ+VYV+E+
Sbjct: 78  W--------------KHFGMDWAFVDPATPVETGKKFCICVKEVLPWVMLPLQVVYVDES 137

Query: 124 RGTNMARTCFSFGSGTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSYPYV 183
           R +      F +GSGTLQGHLLAGEE+FSIE+D N +VWYEI SFSKPAH LSFL YPYV
Sbjct: 138 RKSRKGPAHFGYGSGTLQGHLLAGEEKFSIELDGNGEVWYEITSFSKPAHFLSFLGYPYV 197

Query: 184 ILRQKYFAYQSTNAVKKYLTA 205
            LRQK+FA  S+ AV K++ A
Sbjct: 198 KLRQKHFARHSSEAVLKHVNA 204

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BLAST of CmoCh03G006700.1 vs. Swiss-Prot
Match: U548_DICDI (UPF0548 protein OS=Dictyostelium discoideum GN=DDB_G0271742 PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.7e-13
Identity = 57/203 (28.08%), Postives = 94/203 (46.31%), Query Frame = 1


Query: 6   RSGSFNYSSKFRGATANPSSCLQEDKGLSQEGFLLNHARILVGSGVETYEKGKKALQNWR 65
           R   F YS+ +   T + ++  + +       F ++  +I +G+GVE ++K   AL+ W+
Sbjct: 20  REEQFAYSNLY--GTQDYATKEEYEMDPKYSNFDVDQVKIQLGTGVECFQKAVAALKQWK 79

Query: 66  REFLVSSTQCKFCRHFGLNWA-FVDSSTPVHPGVKFCVCAKEFLPWVVMPLQIVYVNENR 125
                         HF L+W  F   +TP+  G    + +K+   W++   +I Y+ +  
Sbjct: 80  --------------HFDLDWVDFYFKNTPIAVGETVGILSKQVGFWILSFARINYLYDGD 139

Query: 126 GTNMARTCFSFGSGTLQGHLLAGEERFSIEM-------DSNSQVWYEILSFSKPAHILSF 185
             +     F +  GTL+ H+  GEERF IE             V+YE+LSFS+P++ LS 
Sbjct: 140 QED-GSIKFGYSYGTLKDHVEKGEERFVIEWVRDPDGAPDKGAVYYEMLSFSEPSYWLSQ 199

Query: 186 LSYPYVILRQKYFAYQSTNAVKK 201
           L YP     Q  F   S N + K
Sbjct: 200 LGYPVTRYFQNKFVVDSCNQMLK 205

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BLAST of CmoCh03G006700.1 vs. Swiss-Prot
Match: Y2035_DEIRA (UPF0548 protein DR_2035 OS=Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) GN=DR_2035 PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 5.7e-08
Identity = 44/148 (29.73%), Postives = 68/148 (45.95%), Query Frame = 1


Query: 44  RILVGSGVETYEKGKKALQNWRREFLVSSTQCKFCRHFGLNWAFVDSSTPV-HPGVKFCV 103
           R+ VG G   +E+ K AL+  +        Q    R  G      ++STP+   G    +
Sbjct: 47  RVRVGEGEACWERAKAALRGGQM------FQDWVLRPHG------EASTPLSRQGATVVL 106

Query: 104 CAKEFLPWVVMPLQIVYVNENRGTNMARTC--FSFGSGTLQGHLLAGEERFSIEMDSNSQ 163
             + F PW      +  +  NR   +      + FG GTL GHL+ GEERF +E D+   
Sbjct: 107 LVRHFGPWGRRKWGLYSLMTNRVLYLVDEPDRYGFGYGTLPGHLVRGEERFLLERDAGGA 166

Query: 164 VWYEILSFSKPAHILSFLSYPYVILRQK 189
           VW+++ +FS+ A   S  + P V   Q+
Sbjct: 167 VWFDLTTFSRAALPFSRFAQPLVGAAQR 182

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BLAST of CmoCh03G006700.1 vs. TrEMBL
Match: A0A0A0KKV8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G507400 PE=4 SV=1)

HSP 1 Score: 357.1 bits (915), Expect = 1.5e-95
Identity = 177/205 (86.34%), Postives = 183/205 (89.27%), Query Frame = 1


Query: 4   IIRSGSFNYSSKFRGATANPSSCLQEDKG-LSQEGFLLNHARILVGSGVETYEKGKKALQ 63
           I R+GSFNY+SKFRGATANPSSCLQEDKG +SQEGFLLNHARILVGSGV TYEKGKKALQ
Sbjct: 18  IERAGSFNYNSKFRGATANPSSCLQEDKGGISQEGFLLNHARILVGSGVGTYEKGKKALQ 77

Query: 64  NWRREFLVSSTQCKFCRHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVMPLQIVYVNE 123
           NWR              HFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVV+PLQIVYVNE
Sbjct: 78  NWR--------------HFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVLPLQIVYVNE 137

Query: 124 NRGTNMARTCFSFGSGTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSYPY 183
           NR TN  RTCFSFGSGTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSYPY
Sbjct: 138 NRDTNKGRTCFSFGSGTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSYPY 197

Query: 184 VILRQKYFAYQSTNAVKKYLTAKHS 208
           +ILRQKYFA+QSTNAVKKYLT  HS
Sbjct: 198 IILRQKYFAHQSTNAVKKYLTPTHS 208

[Close]

BLAST of CmoCh03G006700.1 vs. TrEMBL
Match: M5W4V4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023767mg PE=4 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 6.9e-77
Identity = 143/204 (70.10%), Postives = 160/204 (78.43%), Query Frame = 1


Query: 4   IIRSGSFNYSSKFRGATANPSSCLQEDKGLSQEGFLLNHARILVGSGVETYEKGKKALQN 63
           I RSGSFNY +KFRGAT    S LQEDKGLS  GFL NHAR+LVGSGV+TYEKGK+ALQ+
Sbjct: 18  IDRSGSFNYEAKFRGATTKSLSSLQEDKGLSNNGFLFNHARVLVGSGVDTYEKGKRALQD 77

Query: 64  WRREFLVSSTQCKFCRHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVMPLQIVYVNEN 123
           WR              HFGLNWAFVD  TPV  GVKFCVC KEFLPWV+MPLQ+VYVNEN
Sbjct: 78  WR--------------HFGLNWAFVDPKTPVQNGVKFCVCVKEFLPWVMMPLQVVYVNEN 137

Query: 124 RGTNMARTCFSFGSGTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSYPYV 183
           R +  +   F FG GTLQGHLLAGEERFSIE+D N+QVWYEILSFSKPAH LSF+ YPYV
Sbjct: 138 RPSKQSMASFRFGGGTLQGHLLAGEERFSIELDENNQVWYEILSFSKPAHPLSFIGYPYV 197

Query: 184 ILRQKYFAYQSTNAVKKYLTAKHS 208
           +LRQKYFA+QS+NA+ K+L A  S
Sbjct: 198 MLRQKYFAHQSSNAIMKHLNALKS 207

[Close]

BLAST of CmoCh03G006700.1 vs. TrEMBL
Match: A0A067FVI3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028245mg PE=4 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 3.2e-74
Identity = 137/201 (68.16%), Postives = 158/201 (78.61%), Query Frame = 1


Query: 4   IIRSGSFNYSSKFRGATANPSSCLQEDKGLSQEGFLLNHARILVGSGVETYEKGKKALQN 63
           I +SG FNY +K++GATA P +CL+ED+GLS++GFLLNHAR+LVGSG+ETYEKGK AL+ 
Sbjct: 23  IDKSGVFNYDTKYKGATAKPVACLKEDQGLSKDGFLLNHARVLVGSGLETYEKGKTALKT 82

Query: 64  WRREFLVSSTQCKFCRHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVMPLQIVYVNEN 123
           W              RHFGLNWAFVD  TP+  GVKFCVC KEFLPWV +PLQIVYVNE+
Sbjct: 83  W--------------RHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYVNES 142

Query: 124 RGTNMARTCFSFGSGTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSYPYV 183
                    F FGSGTLQGHLLAGEERFSIE+D N+QVWYEI+SFSKPA  LSF+ YPYV
Sbjct: 143 IRKKKTAASFGFGSGTLQGHLLAGEERFSIELDDNNQVWYEIVSFSKPADFLSFIGYPYV 202

Query: 184 ILRQKYFAYQSTNAVKKYLTA 205
            LRQKYFA+QS NAVKK+LTA
Sbjct: 203 QLRQKYFAHQSVNAVKKHLTA 209

[Close]

BLAST of CmoCh03G006700.1 vs. TrEMBL
Match: V4SI89_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026505mg PE=4 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 2.7e-73
Identity = 135/201 (67.16%), Postives = 157/201 (78.11%), Query Frame = 1


Query: 4   IIRSGSFNYSSKFRGATANPSSCLQEDKGLSQEGFLLNHARILVGSGVETYEKGKKALQN 63
           I +SG FNY +K++GATA P +CL+ED+GLS++GFLLNHAR+LVGSG+ETYEKGK AL+ 
Sbjct: 18  IDKSGVFNYDTKYKGATAKPVACLKEDQGLSKDGFLLNHARVLVGSGLETYEKGKTALKT 77

Query: 64  WRREFLVSSTQCKFCRHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVMPLQIVYVNEN 123
           W              RHFGLNWAFVD  TP+  GVKFCVC KEFLPWV +PLQIVYVNE+
Sbjct: 78  W--------------RHFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVTLPLQIVYVNES 137

Query: 124 RGTNMARTCFSFGSGTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSYPYV 183
                    F FGSGTLQGHLLAGEERFS+E+D N+QVWYEI+SFSKPA  LSF+ YPYV
Sbjct: 138 IRKKKTAASFGFGSGTLQGHLLAGEERFSLELDENNQVWYEIVSFSKPADFLSFIGYPYV 197

Query: 184 ILRQKYFAYQSTNAVKKYLTA 205
            LRQKYFA+QS  AVKK+LTA
Sbjct: 198 QLRQKYFAHQSVTAVKKHLTA 204

[Close]

BLAST of CmoCh03G006700.1 vs. TrEMBL
Match: A0A061DGD7_THECC (UPF0548 protein OS=Theobroma cacao GN=TCM_000110 PE=4 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 6.0e-73
Identity = 134/201 (66.67%), Postives = 158/201 (78.61%), Query Frame = 1


Query: 4   IIRSGSFNYSSKFRGATANPSSCLQEDKGLSQEGFLLNHARILVGSGVETYEKGKKALQN 63
           I +SG+FNY +K++GATA P SC++EDK LS++G+L+NHAR+LVGSG++TYEKGK ALQN
Sbjct: 18  INKSGTFNYDTKYKGATAKPVSCIKEDKELSKDGYLVNHARVLVGSGLQTYEKGKAALQN 77

Query: 64  WRREFLVSSTQCKFCRHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVMPLQIVYVNEN 123
           WR              HFGLNWAFVD  TP+  GVKFCVC KEFLPWV+MPLQ+VYV E+
Sbjct: 78  WR--------------HFGLNWAFVDPKTPIQNGVKFCVCVKEFLPWVMMPLQVVYVKES 137

Query: 124 RG--TNMARTCFSFGSGTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSYP 183
           +   T  A   F FGSGTLQGHLLAGEERFSIE+D N QVWYEILSFSKPAH LSF+ YP
Sbjct: 138 KSAKTKKAVASFGFGSGTLQGHLLAGEERFSIELDENDQVWYEILSFSKPAHFLSFIGYP 197

Query: 184 YVILRQKYFAYQSTNAVKKYL 203
           YV LRQKYFA+QS NAV  ++
Sbjct: 198 YVYLRQKYFAHQSANAVLNHV 204

[Close]

BLAST of CmoCh03G006700.1 vs. TAIR10
Match: AT2G17695.1 (AT2G17695.1 FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 251.1 bits (640), Expect = 5.8e-67
Identity = 117/201 (58.21%), Postives = 151/201 (75.12%), Query Frame = 1


Query: 4   IIRSGSFNYSSKFRGATANPSSCLQEDKGLSQEGFLLNHARILVGSGVETYEKGKKALQN 63
           I ++G+FNY +K+RG ++   + L+ED  + ++GFL+NHAR+LVGSG E+YEKGKKALQN
Sbjct: 18  INKTGTFNYDNKYRGVSSRSIAKLKEDSEIDKDGFLINHARVLVGSGRESYEKGKKALQN 77

Query: 64  WRREFLVSSTQCKFCRHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVMPLQIVYVNEN 123
           W              +HFG++WAFVD +TPV  G KFC+C KE LPWV++PLQ+VYV+E+
Sbjct: 78  W--------------KHFGMDWAFVDPATPVETGKKFCICVKEVLPWVMLPLQVVYVDES 137

Query: 124 RGTNMARTCFSFGSGTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSYPYV 183
           R +      F +GSGTLQGHLLAGEE+FSIE+D N +VWYEI SFSKPAH LSFL YPYV
Sbjct: 138 RKSRKGPAHFGYGSGTLQGHLLAGEEKFSIELDGNGEVWYEITSFSKPAHFLSFLGYPYV 197

Query: 184 ILRQKYFAYQSTNAVKKYLTA 205
            LRQK+FA  S+ AV K++ A
Sbjct: 198 KLRQKHFARHSSEAVLKHVNA 204

[Close]

BLAST of CmoCh03G006700.1 vs. NCBI nr
Match: gi|659080608|ref|XP_008440883.1| (PREDICTED: UPF0548 protein At2g17695 isoform X1 [Cucumis melo])

HSP 1 Score: 362.1 bits (928), Expect = 6.6e-97
Identity = 178/204 (87.25%), Postives = 182/204 (89.22%), Query Frame = 1


Query: 4   IIRSGSFNYSSKFRGATANPSSCLQEDKGLSQEGFLLNHARILVGSGVETYEKGKKALQN 63
           I R+GSFNYSSKFRGATANPSSCLQEDKG+SQEGFLLNHARILVGSGVETYEKGKKALQN
Sbjct: 18  IERAGSFNYSSKFRGATANPSSCLQEDKGISQEGFLLNHARILVGSGVETYEKGKKALQN 77

Query: 64  WRREFLVSSTQCKFCRHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVMPLQIVYVNEN 123
           WR              HFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVV+PLQIVYVNEN
Sbjct: 78  WR--------------HFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVLPLQIVYVNEN 137

Query: 124 RGTNMARTCFSFGSGTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSYPYV 183
           R TN  RTCFSFGSGTLQGHLLAGEERFSIEMDSNSQVWYEILS SKPAHILSFLSYPYV
Sbjct: 138 RNTNKGRTCFSFGSGTLQGHLLAGEERFSIEMDSNSQVWYEILSISKPAHILSFLSYPYV 197

Query: 184 ILRQKYFAYQSTNAVKKYLTAKHS 208
           ILRQKYFA+QSTNA KKYLT  HS
Sbjct: 198 ILRQKYFAHQSTNAFKKYLTPTHS 207

[Close]

BLAST of CmoCh03G006700.1 vs. NCBI nr
Match: gi|449434104|ref|XP_004134836.1| (PREDICTED: UPF0548 protein At2g17695 [Cucumis sativus])

HSP 1 Score: 357.1 bits (915), Expect = 2.1e-95
Identity = 177/205 (86.34%), Postives = 183/205 (89.27%), Query Frame = 1


Query: 4   IIRSGSFNYSSKFRGATANPSSCLQEDKG-LSQEGFLLNHARILVGSGVETYEKGKKALQ 63
           I R+GSFNY+SKFRGATANPSSCLQEDKG +SQEGFLLNHARILVGSGV TYEKGKKALQ
Sbjct: 18  IERAGSFNYNSKFRGATANPSSCLQEDKGGISQEGFLLNHARILVGSGVGTYEKGKKALQ 77

Query: 64  NWRREFLVSSTQCKFCRHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVMPLQIVYVNE 123
           NWR              HFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVV+PLQIVYVNE
Sbjct: 78  NWR--------------HFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVLPLQIVYVNE 137

Query: 124 NRGTNMARTCFSFGSGTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSYPY 183
           NR TN  RTCFSFGSGTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSYPY
Sbjct: 138 NRDTNKGRTCFSFGSGTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSYPY 197

Query: 184 VILRQKYFAYQSTNAVKKYLTAKHS 208
           +ILRQKYFA+QSTNAVKKYLT  HS
Sbjct: 198 IILRQKYFAHQSTNAVKKYLTPTHS 208

[Close]

BLAST of CmoCh03G006700.1 vs. NCBI nr
Match: gi|470102636|ref|XP_004287757.1| (PREDICTED: UPF0548 protein At2g17695 [Fragaria vesca subsp. vesca])

HSP 1 Score: 298.1 bits (762), Expect = 1.2e-77
Identity = 142/201 (70.65%), Postives = 161/201 (80.10%), Query Frame = 1


Query: 4   IIRSGSFNYSSKFRGATANPSSCLQEDKGLSQEGFLLNHARILVGSGVETYEKGKKALQN 63
           I RSG FNY +KFRGATA   S LQEDKGLS+ GFL NHAR+LVGSG+ETYEKGK+ALQ+
Sbjct: 18  IDRSGGFNYEAKFRGATAKSLSSLQEDKGLSENGFLCNHARVLVGSGLETYEKGKRALQD 77

Query: 64  WRREFLVSSTQCKFCRHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVMPLQIVYVNEN 123
           WR              HFGLNWAFVD  TPV  GVKFCVC KEFLPWV+MPLQIVYVNEN
Sbjct: 78  WR--------------HFGLNWAFVDPKTPVQNGVKFCVCVKEFLPWVMMPLQIVYVNEN 137

Query: 124 RGTNMARTCFSFGSGTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSYPYV 183
           + +  +   F FG GTLQGHLLAGEERFSIE+D N+QVWYEILSFSKPAH+LSF+ YPYV
Sbjct: 138 KSSKQSMASFRFGGGTLQGHLLAGEERFSIELDENNQVWYEILSFSKPAHVLSFVGYPYV 197

Query: 184 ILRQKYFAYQSTNAVKKYLTA 205
           +LRQ+YFA+ STNA+KK+L A
Sbjct: 198 MLRQRYFAHHSTNAIKKHLNA 204

[Close]

BLAST of CmoCh03G006700.1 vs. NCBI nr
Match: gi|645273676|ref|XP_008241991.1| (PREDICTED: UPF0548 protein At2g17695 [Prunus mume])

HSP 1 Score: 295.8 bits (756), Expect = 5.8e-77
Identity = 143/202 (70.79%), Postives = 160/202 (79.21%), Query Frame = 1


Query: 6   RSGSFNYSSKFRGATANPSSCLQEDKGLSQEGFLLNHARILVGSGVETYEKGKKALQNWR 65
           RSGSFNY +KFRGATA   S LQEDKGLS  GFL NHAR+LVGSGV+TYEKGK+ALQ+WR
Sbjct: 20  RSGSFNYEAKFRGATAKSLSSLQEDKGLSNNGFLFNHARVLVGSGVDTYEKGKRALQDWR 79

Query: 66  REFLVSSTQCKFCRHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVMPLQIVYVNENRG 125
                         HFGLNWAFVD  TPV  GVKFCVC KEFLPWV+MPLQ+VYVNENR 
Sbjct: 80  --------------HFGLNWAFVDPKTPVQNGVKFCVCVKEFLPWVMMPLQVVYVNENRP 139

Query: 126 TNMARTCFSFGSGTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSYPYVIL 185
           +  +   F FG GTLQGHLLAGEERFSIE+D N+QVWYEILSFSKPAH LSF+ YPYV+L
Sbjct: 140 SKQSMASFRFGGGTLQGHLLAGEERFSIELDENNQVWYEILSFSKPAHPLSFIGYPYVML 199

Query: 186 RQKYFAYQSTNAVKKYLTAKHS 208
           RQKYFA+QS+NA+ K+L A  S
Sbjct: 200 RQKYFAHQSSNAIMKHLNALKS 207

[Close]

BLAST of CmoCh03G006700.1 vs. NCBI nr
Match: gi|694438231|ref|XP_009346104.1| (PREDICTED: UPF0548 protein At2g17695-like [Pyrus x bretschneideri])

HSP 1 Score: 295.8 bits (756), Expect = 5.8e-77
Identity = 143/204 (70.10%), Postives = 162/204 (79.41%), Query Frame = 1


Query: 4   IIRSGSFNYSSKFRGATANPSSCLQEDKGLSQEGFLLNHARILVGSGVETYEKGKKALQN 63
           I RSGSFNY  KF+GATA   S LQEDKGLS++GFLLNH+R LVGSG++TYEKGK ALQ+
Sbjct: 18  IDRSGSFNYDPKFKGATAKSLSSLQEDKGLSKDGFLLNHSRNLVGSGLDTYEKGKMALQD 77

Query: 64  WRREFLVSSTQCKFCRHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVMPLQIVYVNEN 123
           WR              HFGLNWAFVD  TPV  GVKFCVC KEFLPWV+MPLQ+VYVNEN
Sbjct: 78  WR--------------HFGLNWAFVDPKTPVQNGVKFCVCVKEFLPWVMMPLQVVYVNEN 137

Query: 124 RGTNMARTCFSFGSGTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSYPYV 183
           + +  A   F FG GTLQGHLLAGEERFSIE+D N+QVWYEILSFSKPAH+LSF+ YPYV
Sbjct: 138 KRSKQAMASFRFGGGTLQGHLLAGEERFSIELDENNQVWYEILSFSKPAHLLSFIGYPYV 197

Query: 184 ILRQKYFAYQSTNAVKKYLTAKHS 208
           +LRQKYFA+QSTNA+ K+L A  S
Sbjct: 198 MLRQKYFAHQSTNAIMKHLNASKS 207

The following BLAST results are available for this feature:

BLAST of CmoCh03G006700.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
U548_ARATH	1.0e-65	58.21	UPF0548 protein At2g17695 OS=Arabidopsis thaliana GN=At2g17695 PE=2 SV=1	[more]
U548_DICDI	2.7e-13	28.08	UPF0548 protein OS=Dictyostelium discoideum GN=DDB_G0271742 PE=3 SV=1	[more]
Y2035_DEIRA	5.7e-08	29.73	UPF0548 protein DR_2035 OS=Deinococcus radiodurans (strain ATCC 13939 / DSM 2053...	[more]

BLAST of CmoCh03G006700.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KKV8_CUCSA	1.5e-95	86.34	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G507400 PE=4 SV=1	[more]
M5W4V4_PRUPE	6.9e-77	70.10	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa023767mg PE=4 SV=1	[more]
A0A067FVI3_CITSI	3.2e-74	68.16	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028245mg PE=4 SV=1	[more]
V4SI89_9ROSI	2.7e-73	67.16	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026505mg PE=4 SV=1	[more]
A0A061DGD7_THECC	6.0e-73	66.67	UPF0548 protein OS=Theobroma cacao GN=TCM_000110 PE=4 SV=1	[more]

BLAST of CmoCh03G006700.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G17695.1	5.8e-67	58.21	FUNCTIONS IN: molecular_function unknown	[more]

BLAST of CmoCh03G006700.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659080608\|ref\|XP_008440883.1\|	6.6e-97	87.25	PREDICTED: UPF0548 protein At2g17695 isoform X1 [Cucumis melo]	[more]
gi\|449434104\|ref\|XP_004134836.1\|	2.1e-95	86.34	PREDICTED: UPF0548 protein At2g17695 [Cucumis sativus]	[more]
gi\|470102636\|ref\|XP_004287757.1\|	1.2e-77	70.65	PREDICTED: UPF0548 protein At2g17695 [Fragaria vesca subsp. vesca]	[more]
gi\|645273676\|ref\|XP_008241991.1\|	5.8e-77	70.79	PREDICTED: UPF0548 protein At2g17695 [Prunus mume]	[more]
gi\|694438231\|ref\|XP_009346104.1\|	5.8e-77	70.10	PREDICTED: UPF0548 protein At2g17695-like [Pyrus x bretschneideri]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR018960	DUF1990

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0009941	chloroplast envelope
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh03G006700	CmoCh03G006700	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh03G006700.1	CmoCh03G006700.1-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh03G006700.1.three_prime_UTR.1	CmoCh03G006700.1.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh03G006700.1.CDS.3	CmoCh03G006700.1.CDS.3	CDS
CmoCh03G006700.1.CDS.2	CmoCh03G006700.1.CDS.2	CDS
CmoCh03G006700.1.CDS.1	CmoCh03G006700.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh03G006700.1.exon.3	CmoCh03G006700.1.exon.3	exon
CmoCh03G006700.1.exon.2	CmoCh03G006700.1.exon.2	exon
CmoCh03G006700.1.exon.1	CmoCh03G006700.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018960	Domain of unknown function DUF1990	PFAM	PF09348	DUF1990	coord: 32..196 score: 3.5
None	No IPR available	PANTHER	PTHR34202	FAMILY NOT NAMED	coord: 4..200 score: 4.9
None	No IPR available	PANTHER	PTHR34202:SF1	UPF0548 PROTEIN	coord: 4..200 score: 4.9