Carg00552 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg00552
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	DUF1990 domain-containing protein
Location	Cucurbita_argyrosperma_scaffold_014 : 301854 .. 303124 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGTTCATCATTAGGTCTGGTTCCTTCAACTATAGCAGCAAGTTTAGAGGAGCTACTGCTAATCCCAGCTCTTGCCTGCAAGAAGATAAGGGGCTCTCACAAGAAGGGTTTCTTCTCAACCATGCTCGTATTTTGGTGGGTTCTGGTGTTGAGACTTATGAAAAGGGGAAGAAAGCTCTTCAGAACTGGAGGTTTTCTGGCTATATACCTTTTGGTTGAACAGTAACGTATTAGACGAGAATTCTTGGTCTCTTCAACCCAGTGCAAATTTTGCAGGCATTTTGGGTTGAATTGGGCATTTGTTGATTCCTCAACGCCAGTTCATCCGGGAGTGAAGTTTTGTGTCTGTGCCAAGGAGTTCCTTCCATGGGTGGTGATGCCTCTTCAAATTGTATATGTAAATGAGAACAGAGGTACCAATATGGCTAGGACATGTTTCAGTTTTGGCAGTGGTACCCTTCAAGGCCATCTTCTGGTTCGTCCATCATTAATTTGTTTTTTCCAGGCTAATTTTCGTTTGTTCTTCTCTAATTTATATTATTGGGTTTCACTATACTTGTATTAATGTACTTGATAGTTAATATGATCTTGAATTCTCACCATTCCAGGCGGGTGAAGAACGGTTTTCGATCGAGATGGACTCGAACAGCCAGGTGTGGTATGAAATTCTTTCCTTCTCAAAGCCTGCCCACATATTATCATTTCTTAGTTATCCTTATGTAATTCTTCGGCAAAAGTATTTTGCTTATCAATCTACAAATGCAGTTAAGAAATATTTGACTGCCAAGCATTCCTAACTCCTGGTGTGCTTGTGTGTATGTTCTTAGCTATCCTTGTGTGTATGTTCTTAGCTATCCTTGTGTGTATGTTCTTAGCTATCCTTGTGTGTGTGTGTATGTTCTTGTGTGTATGCAGTTAAGAATGCTTCTTCCTGCTCTTCAATCCTCCTATAGTGTAGCATTCAGTCCTTAGATCGTAGCCTTTCTGTTAAGAAAAATGGCATCATCAGGACATTGGAATAGCTCAACTATACAAATGAACTCTGTCATGATCATTGATGTTTCTTAAATTTGAGAACATCTTATCACTGGCTGCTTCTAACCAGTTGCCAACTTCCATTAAAAGTGCAATCCCTAGAGCTTTTTTTTTTTTTTTTCACAGCCCCATCAAAATTCAGGTCTAGGATGATCACTTTTGGCTGCCGATGGGTGAAATTCCTATGCAGCACAAGCTAGAAAGGAGACTTTCTGAAACTAGGGCTGCATGGT

mRNA sequence

ATGATGTTCATCATTAGGTCTGGTTCCTTCAACTATAGCAGCAAGTTTAGAGGAGCTACTGCTAATCCCAGCTCTTGCCTGCAAGAAGATAAGGGGCTCTCACAAGAAGGGTTTCTTCTCAACCATGCTCGTATTTTGGTGGGTTCTGGTGTTGAGACTTATGAAAAGGGGAAGAAAGCTCTTCAGAACTGGAGGCATTTTGGGTTGAATTGGGCATTTGTTGATTCCTCAACGCCAGTTCATCCGGGAGTGAAGTTTTGTGTCTGTGCCAAGGAGTTCCTTCCATGGGTGGTGATGCCTCTTCAAATTGTATATGTAAATGAGAACAGAGGTACCAATATGGCTAGGACATGTTTCAGTTTTGGCAGTGGTACCCTTCAAGGCCATCTTCTGGCGGGTGAAGAACGGTTTTCGATCGAGATGGACTCGAACAGCCAGGTGTGGTATGAAATTCTTTCCTTCTCAAAGCCTGCCCACATATTATCATTTCTTAGTTATCCTTATGTAATTCTTCGGCAAAAGTATTTTGCTTATCAATCTACAAATGCAGTTAAGAAATATTTGACTGCCAAGCATTCCTAACTCCTGGTGTGCTTGTGTGTATGTTCTTAGCTATCCTTGTGTGTATGTTCTTAGCTATCCTTGTGTGTATGTTCTTAGCTATCCTTGTGTGTGTGTGTATGTTCTTGTGTGTATGCAGTTAAGAATGCTTCTTCCTGCTCTTCAATCCTCCTATAGTGTAGCATTCAGTCCTTAGATCGTAGCCTTTCTGTTAAGAAAAATGGCATCATCAGGACATTGGAATAGCTCAACTATACAAATGAACTCTGTCATGATCATTGATGTTTCTTAAATTTGAGAACATCTTATCACTGGCTGCTTCTAACCAGTTGCCAACTTCCATTAAAAGTGCAATCCCTAGAGCTTTTTTTTTTTTTTTTCACAGCCCCATCAAAATTCAGGTCTAGGATGATCACTTTTGGCTGCCGATGGGTGAAATTCCTATGCAGCACAAGCTAGAAAGGAGACTTTCTGAAACTAGGGCTGCATGGT

Coding sequence (CDS)

ATGATGTTCATCATTAGGTCTGGTTCCTTCAACTATAGCAGCAAGTTTAGAGGAGCTACTGCTAATCCCAGCTCTTGCCTGCAAGAAGATAAGGGGCTCTCACAAGAAGGGTTTCTTCTCAACCATGCTCGTATTTTGGTGGGTTCTGGTGTTGAGACTTATGAAAAGGGGAAGAAAGCTCTTCAGAACTGGAGGCATTTTGGGTTGAATTGGGCATTTGTTGATTCCTCAACGCCAGTTCATCCGGGAGTGAAGTTTTGTGTCTGTGCCAAGGAGTTCCTTCCATGGGTGGTGATGCCTCTTCAAATTGTATATGTAAATGAGAACAGAGGTACCAATATGGCTAGGACATGTTTCAGTTTTGGCAGTGGTACCCTTCAAGGCCATCTTCTGGCGGGTGAAGAACGGTTTTCGATCGAGATGGACTCGAACAGCCAGGTGTGGTATGAAATTCTTTCCTTCTCAAAGCCTGCCCACATATTATCATTTCTTAGTTATCCTTATGTAATTCTTCGGCAAAAGTATTTTGCTTATCAATCTACAAATGCAGTTAAGAAATATTTGACTGCCAAGCATTCCTAA

Protein sequence

MMFIIRSGSFNYSSKFRGATANPSSCLQEDKGLSQEGFLLNHARILVGSGVETYEKGKKALQNWRHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVMPLQIVYVNENRGTNMARTCFSFGSGTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSYPYVILRQKYFAYQSTNAVKKYLTAKHS

Homology

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BLAST of Carg00552 vs. NCBI nr
Match: XP_022950650.1 (UPF0548 protein At2g17695 [Cucurbita moschata] >XP_023543885.1 UPF0548 protein At2g17695 [Cucurbita pepo subsp. pepo] >XP_023543886.1 UPF0548 protein At2g17695 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 391.7 bits (1005), Expect = 1.4e-105
Identity = 189/190 (99.47%), Postives = 189/190 (99.47%), Query Frame = 0


Query: 4   IIRSGSFNYSSKFRGATANPSSCLQEDKGLSQEGFLLNHARILVGSGVETYEKGKKALQN 63
           I RSGSFNYSSKFRGATANPSSCLQEDKGLSQEGFLLNHARILVGSGVETYEKGKKALQN
Sbjct: 18  IDRSGSFNYSSKFRGATANPSSCLQEDKGLSQEGFLLNHARILVGSGVETYEKGKKALQN 77

Query: 64  WRHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVMPLQIVYVNENRGTNMARTCFSFGS 123
           WRHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVMPLQIVYVNENRGTNMARTCFSFGS
Sbjct: 78  WRHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVMPLQIVYVNENRGTNMARTCFSFGS 137

Query: 124 GTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSYPYVILRQKYFAYQSTNA 183
           GTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSYPYVILRQKYFAYQSTNA
Sbjct: 138 GTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSYPYVILRQKYFAYQSTNA 197

Query: 184 VKKYLTAKHS 194
           VKKYLTAKHS
Sbjct: 198 VKKYLTAKHS 207

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BLAST of Carg00552 vs. NCBI nr
Match: XP_022979037.1 (UPF0548 protein At2g17695 [Cucurbita maxima])

HSP 1 Score: 391.3 bits (1004), Expect = 1.8e-105
Identity = 188/190 (98.95%), Postives = 189/190 (99.47%), Query Frame = 0


Query: 4   IIRSGSFNYSSKFRGATANPSSCLQEDKGLSQEGFLLNHARILVGSGVETYEKGKKALQN 63
           I RSGSFNYSSKFRGATANPSSCLQEDKGLSQEGFLLNHARILVGSGVETYEKGKKALQN
Sbjct: 18  IDRSGSFNYSSKFRGATANPSSCLQEDKGLSQEGFLLNHARILVGSGVETYEKGKKALQN 77

Query: 64  WRHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVMPLQIVYVNENRGTNMARTCFSFGS 123
           WRHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVMPLQIVYVNENRGTNMARTCFSFGS
Sbjct: 78  WRHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVMPLQIVYVNENRGTNMARTCFSFGS 137

Query: 124 GTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSYPYVILRQKYFAYQSTNA 183
           GTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSYPY+ILRQKYFAYQSTNA
Sbjct: 138 GTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSYPYIILRQKYFAYQSTNA 197

Query: 184 VKKYLTAKHS 194
           VKKYLTAKHS
Sbjct: 198 VKKYLTAKHS 207

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BLAST of Carg00552 vs. NCBI nr
Match: XP_008440884.1 (PREDICTED: UPF0548 protein At2g17695 [Cucumis melo] >XP_008440885.1 PREDICTED: UPF0548 protein At2g17695 [Cucumis melo])

HSP 1 Score: 372.1 bits (954), Expect = 1.2e-99
Identity = 178/190 (93.68%), Postives = 182/190 (95.79%), Query Frame = 0


Query: 4   IIRSGSFNYSSKFRGATANPSSCLQEDKGLSQEGFLLNHARILVGSGVETYEKGKKALQN 63
           I R+GSFNYSSKFRGATANPSSCLQEDKG+SQEGFLLNHARILVGSGVETYEKGKKALQN
Sbjct: 18  IERAGSFNYSSKFRGATANPSSCLQEDKGISQEGFLLNHARILVGSGVETYEKGKKALQN 77

Query: 64  WRHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVMPLQIVYVNENRGTNMARTCFSFGS 123
           WRHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVV+PLQIVYVNENR TN  RTCFSFGS
Sbjct: 78  WRHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVLPLQIVYVNENRNTNKGRTCFSFGS 137

Query: 124 GTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSYPYVILRQKYFAYQSTNA 183
           GTLQGHLLAGEERFSIEMDSNSQVWYEILS SKPAHILSFLSYPYVILRQKYFA+QSTNA
Sbjct: 138 GTLQGHLLAGEERFSIEMDSNSQVWYEILSISKPAHILSFLSYPYVILRQKYFAHQSTNA 197

Query: 184 VKKYLTAKHS 194
            KKYLT  HS
Sbjct: 198 FKKYLTPTHS 207

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BLAST of Carg00552 vs. NCBI nr
Match: XP_004134836.1 (PREDICTED: UPF0548 protein At2g17695 [Cucumis sativus] >XP_011658066.1 PREDICTED: UPF0548 protein At2g17695 [Cucumis sativus] >KGN48967.1 hypothetical protein Csa_6G507400 [Cucumis sativus])

HSP 1 Score: 367.1 bits (941), Expect = 3.7e-98
Identity = 177/191 (92.67%), Postives = 183/191 (95.81%), Query Frame = 0


Query: 4   IIRSGSFNYSSKFRGATANPSSCLQEDK-GLSQEGFLLNHARILVGSGVETYEKGKKALQ 63
           I R+GSFNY+SKFRGATANPSSCLQEDK G+SQEGFLLNHARILVGSGV TYEKGKKALQ
Sbjct: 18  IERAGSFNYNSKFRGATANPSSCLQEDKGGISQEGFLLNHARILVGSGVGTYEKGKKALQ 77

Query: 64  NWRHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVMPLQIVYVNENRGTNMARTCFSFG 123
           NWRHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVV+PLQIVYVNENR TN  RTCFSFG
Sbjct: 78  NWRHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVLPLQIVYVNENRDTNKGRTCFSFG 137

Query: 124 SGTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSYPYVILRQKYFAYQSTN 183
           SGTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSYPY+ILRQKYFA+QSTN
Sbjct: 138 SGTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSYPYIILRQKYFAHQSTN 197

Query: 184 AVKKYLTAKHS 194
           AVKKYLT  HS
Sbjct: 198 AVKKYLTPTHS 208

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BLAST of Carg00552 vs. NCBI nr
Match: XP_022141808.1 (UPF0548 protein At2g17695 [Momordica charantia] >XP_022141809.1 UPF0548 protein At2g17695 [Momordica charantia] >XP_022141810.1 UPF0548 protein At2g17695 [Momordica charantia] >XP_022141811.1 UPF0548 protein At2g17695 [Momordica charantia] >XP_022141813.1 UPF0548 protein At2g17695 [Momordica charantia] >XP_022141814.1 UPF0548 protein At2g17695 [Momordica charantia] >XP_022141815.1 UPF0548 protein At2g17695 [Momordica charantia] >XP_022141816.1 UPF0548 protein At2g17695 [Momordica charantia] >XP_022141817.1 UPF0548 protein At2g17695 [Momordica charantia])

HSP 1 Score: 359.0 bits (920), Expect = 1.0e-95
Identity = 172/187 (91.98%), Postives = 179/187 (95.72%), Query Frame = 0


Query: 4   IIRSGSFNYSSKFRGATANPSSCLQEDKGLSQEGFLLNHARILVGSGVETYEKGKKALQN 63
           I RSGSFNYSSKFRGATANPSS L+EDKGL QEGFLLNHARILVGSGVETYEKGKKALQN
Sbjct: 18  IDRSGSFNYSSKFRGATANPSSSLKEDKGLQQEGFLLNHARILVGSGVETYEKGKKALQN 77

Query: 64  WRHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVMPLQIVYVNENRGTNMARTCFSFGS 123
           WRHFGLNWAFVDSSTPV+PGVKFCVC+KEFLPWVVMPLQIVYVNENR   MARTCFSFGS
Sbjct: 78  WRHFGLNWAFVDSSTPVNPGVKFCVCSKEFLPWVVMPLQIVYVNENRDAKMARTCFSFGS 137

Query: 124 GTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSYPYVILRQKYFAYQSTNA 183
           GTLQGHLLAGEERFSIEMD N+QVWYEILSFSKPAHILSF+SYPYVILRQKYFA+QS+NA
Sbjct: 138 GTLQGHLLAGEERFSIEMDKNNQVWYEILSFSKPAHILSFISYPYVILRQKYFAHQSSNA 197

Query: 184 VKKYLTA 191
           VKKY TA
Sbjct: 198 VKKYSTA 204

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BLAST of Carg00552 vs. TAIR10
Match: AT2G17695.1 (FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 261.5 bits (667), Expect = 4.0e-70
Identity = 117/187 (62.57%), Postives = 151/187 (80.75%), Query Frame = 0


Query: 4   IIRSGSFNYSSKFRGATANPSSCLQEDKGLSQEGFLLNHARILVGSGVETYEKGKKALQN 63
           I ++G+FNY +K+RG ++   + L+ED  + ++GFL+NHAR+LVGSG E+YEKGKKALQN
Sbjct: 18  INKTGTFNYDNKYRGVSSRSIAKLKEDSEIDKDGFLINHARVLVGSGRESYEKGKKALQN 77

Query: 64  WRHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVMPLQIVYVNENRGTNMARTCFSFGS 123
           W+HFG++WAFVD +TPV  G KFC+C KE LPWV++PLQ+VYV+E+R +      F +GS
Sbjct: 78  WKHFGMDWAFVDPATPVETGKKFCICVKEVLPWVMLPLQVVYVDESRKSRKGPAHFGYGS 137

Query: 124 GTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSYPYVILRQKYFAYQSTNA 183
           GTLQGHLLAGEE+FSIE+D N +VWYEI SFSKPAH LSFL YPYV LRQK+FA  S+ A
Sbjct: 138 GTLQGHLLAGEEKFSIELDGNGEVWYEITSFSKPAHFLSFLGYPYVKLRQKHFARHSSEA 197

Query: 184 VKKYLTA 191
           V K++ A
Sbjct: 198 VLKHVNA 204

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BLAST of Carg00552 vs. Swiss-Prot
Match: sp|Q8GXB1|U548_ARATH (UPF0548 protein At2g17695 OS=Arabidopsis thaliana OX=3702 GN=At2g17695 PE=2 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 7.2e-69
Identity = 117/187 (62.57%), Postives = 151/187 (80.75%), Query Frame = 0


Query: 4   IIRSGSFNYSSKFRGATANPSSCLQEDKGLSQEGFLLNHARILVGSGVETYEKGKKALQN 63
           I ++G+FNY +K+RG ++   + L+ED  + ++GFL+NHAR+LVGSG E+YEKGKKALQN
Sbjct: 18  INKTGTFNYDNKYRGVSSRSIAKLKEDSEIDKDGFLINHARVLVGSGRESYEKGKKALQN 77

Query: 64  WRHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVMPLQIVYVNENRGTNMARTCFSFGS 123
           W+HFG++WAFVD +TPV  G KFC+C KE LPWV++PLQ+VYV+E+R +      F +GS
Sbjct: 78  WKHFGMDWAFVDPATPVETGKKFCICVKEVLPWVMLPLQVVYVDESRKSRKGPAHFGYGS 137

Query: 124 GTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSYPYVILRQKYFAYQSTNA 183
           GTLQGHLLAGEE+FSIE+D N +VWYEI SFSKPAH LSFL YPYV LRQK+FA  S+ A
Sbjct: 138 GTLQGHLLAGEEKFSIELDGNGEVWYEITSFSKPAHFLSFLGYPYVKLRQKHFARHSSEA 197

Query: 184 VKKYLTA 191
           V K++ A
Sbjct: 198 VLKHVNA 204

[Close]

BLAST of Carg00552 vs. Swiss-Prot
Match: sp|Q86JL6|U548_DICDI (UPF0548 protein OS=Dictyostelium discoideum OX=44689 GN=DDB_G0271742 PE=3 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.4e-16
Identity = 57/189 (30.16%), Postives = 94/189 (49.74%), Query Frame = 0


Query: 6   RSGSFNYSSKFRGATANPSSCLQEDKGLSQEGFLLNHARILVGSGVETYEKGKKALQNWR 65
           R   F YS+ +   T + ++  + +       F ++  +I +G+GVE ++K   AL+ W+
Sbjct: 20  REEQFAYSNLY--GTQDYATKEEYEMDPKYSNFDVDQVKIQLGTGVECFQKAVAALKQWK 79

Query: 66  HFGLNWA-FVDSSTPVHPGVKFCVCAKEFLPWVVMPLQIVYVNENRGTNMARTCFSFGSG 125
           HF L+W  F   +TP+  G    + +K+   W++   +I Y+ +    +     F +  G
Sbjct: 80  HFDLDWVDFYFKNTPIAVGETVGILSKQVGFWILSFARINYLYDGDQED-GSIKFGYSYG 139

Query: 126 TLQGHLLAGEERFSIE-------MDSNSQVWYEILSFSKPAHILSFLSYPYVILRQKYFA 185
           TL+ H+  GEERF IE             V+YE+LSFS+P++ LS L YP     Q  F 
Sbjct: 140 TLKDHVEKGEERFVIEWVRDPDGAPDKGAVYYEMLSFSEPSYWLSQLGYPVTRYFQNKFV 199

Query: 186 YQSTNAVKK 187
             S N + K
Sbjct: 200 VDSCNQMLK 205

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BLAST of Carg00552 vs. Swiss-Prot
Match: sp|Q9RST8|Y2035_DEIRA (UPF0548 protein DR_2035 OS=Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) OX=243230 GN=DR_2035 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.4e-10
Identity = 43/137 (31.39%), Postives = 68/137 (49.64%), Query Frame = 0


Query: 44  RILVGSGVETYEKGKKALQNWRHFGLNWAF---VDSSTPV-HPGVKFCVCAKEFLPWVVM 103
           R+ VG G   +E+ K AL+  + F  +W      ++STP+   G    +  + F PW   
Sbjct: 47  RVRVGEGEACWERAKAALRGGQMF-QDWVLRPHGEASTPLSRQGATVVLLVRHFGPWGRR 106

Query: 104 PLQIVYVNENRGTNMA--RTCFSFGSGTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKP 163
              +  +  NR   +      + FG GTL GHL+ GEERF +E D+   VW+++ +FS+ 
Sbjct: 107 KWGLYSLMTNRVLYLVDEPDRYGFGYGTLPGHLVRGEERFLLERDAGGAVWFDLTTFSRA 166

Query: 164 AHILSFLSYPYVILRQK 175
           A   S  + P V   Q+
Sbjct: 167 ALPFSRFAQPLVGAAQR 182

[Close]

BLAST of Carg00552 vs. TrEMBL
Match: tr|A0A1S3B2T0|A0A1S3B2T0_CUCME (UPF0548 protein At2g17695 OS=Cucumis melo OX=3656 GN=LOC103485173 PE=4 SV=1)

HSP 1 Score: 372.1 bits (954), Expect = 7.6e-100
Identity = 178/190 (93.68%), Postives = 182/190 (95.79%), Query Frame = 0


Query: 4   IIRSGSFNYSSKFRGATANPSSCLQEDKGLSQEGFLLNHARILVGSGVETYEKGKKALQN 63
           I R+GSFNYSSKFRGATANPSSCLQEDKG+SQEGFLLNHARILVGSGVETYEKGKKALQN
Sbjct: 18  IERAGSFNYSSKFRGATANPSSCLQEDKGISQEGFLLNHARILVGSGVETYEKGKKALQN 77

Query: 64  WRHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVMPLQIVYVNENRGTNMARTCFSFGS 123
           WRHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVV+PLQIVYVNENR TN  RTCFSFGS
Sbjct: 78  WRHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVLPLQIVYVNENRNTNKGRTCFSFGS 137

Query: 124 GTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSYPYVILRQKYFAYQSTNA 183
           GTLQGHLLAGEERFSIEMDSNSQVWYEILS SKPAHILSFLSYPYVILRQKYFA+QSTNA
Sbjct: 138 GTLQGHLLAGEERFSIEMDSNSQVWYEILSISKPAHILSFLSYPYVILRQKYFAHQSTNA 197

Query: 184 VKKYLTAKHS 194
            KKYLT  HS
Sbjct: 198 FKKYLTPTHS 207

[Close]

BLAST of Carg00552 vs. TrEMBL
Match: tr|A0A0A0KKV8|A0A0A0KKV8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G507400 PE=4 SV=1)

HSP 1 Score: 367.1 bits (941), Expect = 2.5e-98
Identity = 177/191 (92.67%), Postives = 183/191 (95.81%), Query Frame = 0


Query: 4   IIRSGSFNYSSKFRGATANPSSCLQEDK-GLSQEGFLLNHARILVGSGVETYEKGKKALQ 63
           I R+GSFNY+SKFRGATANPSSCLQEDK G+SQEGFLLNHARILVGSGV TYEKGKKALQ
Sbjct: 18  IERAGSFNYNSKFRGATANPSSCLQEDKGGISQEGFLLNHARILVGSGVGTYEKGKKALQ 77

Query: 64  NWRHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVMPLQIVYVNENRGTNMARTCFSFG 123
           NWRHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVV+PLQIVYVNENR TN  RTCFSFG
Sbjct: 78  NWRHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVLPLQIVYVNENRDTNKGRTCFSFG 137

Query: 124 SGTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSYPYVILRQKYFAYQSTN 183
           SGTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSYPY+ILRQKYFA+QSTN
Sbjct: 138 SGTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSYPYIILRQKYFAHQSTN 197

Query: 184 AVKKYLTAKHS 194
           AVKKYLT  HS
Sbjct: 198 AVKKYLTPTHS 208

[Close]

BLAST of Carg00552 vs. TrEMBL
Match: tr|A0A251ND12|A0A251ND12_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G176600 PE=4 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 1.1e-79
Identity = 143/190 (75.26%), Postives = 160/190 (84.21%), Query Frame = 0


Query: 4   IIRSGSFNYSSKFRGATANPSSCLQEDKGLSQEGFLLNHARILVGSGVETYEKGKKALQN 63
           I RSGSFNY +KFRGAT    S LQEDKGLS  GFL NHAR+LVGSGV+TYEKGK+ALQ+
Sbjct: 51  IDRSGSFNYEAKFRGATTKSLSSLQEDKGLSNNGFLFNHARVLVGSGVDTYEKGKRALQD 110

Query: 64  WRHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVMPLQIVYVNENRGTNMARTCFSFGS 123
           WRHFGLNWAFVD  TPV  GVKFCVC KEFLPWV+MPLQ+VYVNENR +  +   F FG 
Sbjct: 111 WRHFGLNWAFVDPKTPVQNGVKFCVCVKEFLPWVMMPLQVVYVNENRPSKQSMASFRFGG 170

Query: 124 GTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSYPYVILRQKYFAYQSTNA 183
           GTLQGHLLAGEERFSIE+D N+QVWYEILSFSKPAH LSF+ YPYV+LRQKYFA+QS+NA
Sbjct: 171 GTLQGHLLAGEERFSIELDENNQVWYEILSFSKPAHPLSFIGYPYVMLRQKYFAHQSSNA 230

Query: 184 VKKYLTAKHS 194
           + K+L A  S
Sbjct: 231 IMKHLNALKS 240

[Close]

BLAST of Carg00552 vs. TrEMBL
Match: tr|M5W4V4|M5W4V4_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa023767mg PE=4 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 1.1e-79
Identity = 143/190 (75.26%), Postives = 160/190 (84.21%), Query Frame = 0


Query: 4   IIRSGSFNYSSKFRGATANPSSCLQEDKGLSQEGFLLNHARILVGSGVETYEKGKKALQN 63
           I RSGSFNY +KFRGAT    S LQEDKGLS  GFL NHAR+LVGSGV+TYEKGK+ALQ+
Sbjct: 18  IDRSGSFNYEAKFRGATTKSLSSLQEDKGLSNNGFLFNHARVLVGSGVDTYEKGKRALQD 77

Query: 64  WRHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVMPLQIVYVNENRGTNMARTCFSFGS 123
           WRHFGLNWAFVD  TPV  GVKFCVC KEFLPWV+MPLQ+VYVNENR +  +   F FG 
Sbjct: 78  WRHFGLNWAFVDPKTPVQNGVKFCVCVKEFLPWVMMPLQVVYVNENRPSKQSMASFRFGG 137

Query: 124 GTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSYPYVILRQKYFAYQSTNA 183
           GTLQGHLLAGEERFSIE+D N+QVWYEILSFSKPAH LSF+ YPYV+LRQKYFA+QS+NA
Sbjct: 138 GTLQGHLLAGEERFSIELDENNQVWYEILSFSKPAHPLSFIGYPYVMLRQKYFAHQSSNA 197

Query: 184 VKKYLTAKHS 194
           + K+L A  S
Sbjct: 198 IMKHLNALKS 207

[Close]

BLAST of Carg00552 vs. TrEMBL
Match: tr|A0A2I4GPN5|A0A2I4GPN5_9ROSI (UPF0548 protein At2g17695 OS=Juglans regia OX=51240 GN=LOC109009713 PE=4 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 6.3e-78
Identity = 140/187 (74.87%), Postives = 159/187 (85.03%), Query Frame = 0


Query: 4   IIRSGSFNYSSKFRGATANPSSCLQEDKGLSQEGFLLNHARILVGSGVETYEKGKKALQN 63
           I ++G+FNY SKFRGATA P S LQ+DK LS++GFLLNHAR+LVGSG+ETYEKGK ALQ 
Sbjct: 18  INKTGAFNYDSKFRGATAKPLSYLQDDKELSKDGFLLNHARVLVGSGLETYEKGKSALQT 77

Query: 64  WRHFGLNWAFVDSSTPVHPGVKFCVCAKEFLPWVVMPLQIVYVNENRGTNMARTCFSFGS 123
           WRHFGL+WAFVD  TP+  GVKFCVC KEFLPWVVMPL++VYV+E R  N A   F FGS
Sbjct: 78  WRHFGLDWAFVDPKTPIQSGVKFCVCLKEFLPWVVMPLEVVYVHETRKANKALASFGFGS 137

Query: 124 GTLQGHLLAGEERFSIEMDSNSQVWYEILSFSKPAHILSFLSYPYVILRQKYFAYQSTNA 183
           GTLQGHLLAGEERFSIE+D N+QVWYEILS SKPAH LSF+ YPYV LRQKYFA+QSTNA
Sbjct: 138 GTLQGHLLAGEERFSIELDENNQVWYEILSLSKPAHFLSFIGYPYVKLRQKYFAHQSTNA 197

Query: 184 VKKYLTA 191
           V ++ TA
Sbjct: 198 VVQHSTA 204

The following BLAST results are available for this feature:

BLAST of Carg00552 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022950650.1	1.4e-105	99.47	UPF0548 protein At2g17695 [Cucurbita moschata] >XP_023543885.1 UPF0548 protein A...	[more]
XP_022979037.1	1.8e-105	98.95	UPF0548 protein At2g17695 [Cucurbita maxima]	[more]
XP_008440884.1	1.2e-99	93.68	PREDICTED: UPF0548 protein At2g17695 [Cucumis melo] >XP_008440885.1 PREDICTED: U...	[more]
XP_004134836.1	3.7e-98	92.67	PREDICTED: UPF0548 protein At2g17695 [Cucumis sativus] >XP_011658066.1 PREDICTED...	[more]
XP_022141808.1	1.0e-95	91.98	UPF0548 protein At2g17695 [Momordica charantia] >XP_022141809.1 UPF0548 protein ...	[more]

BLAST of Carg00552 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G17695.1	4.0e-70	62.57	FUNCTIONS IN: molecular_function unknown	[more]

BLAST of Carg00552 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q8GXB1\|U548_ARATH	7.2e-69	62.57	UPF0548 protein At2g17695 OS=Arabidopsis thaliana OX=3702 GN=At2g17695 PE=2 SV=1	[more]
sp\|Q86JL6\|U548_DICDI	2.4e-16	30.16	UPF0548 protein OS=Dictyostelium discoideum OX=44689 GN=DDB_G0271742 PE=3 SV=1	[more]
sp\|Q9RST8\|Y2035_DEIRA	3.4e-10	31.39	UPF0548 protein DR_2035 OS=Deinococcus radiodurans (strain ATCC 13939 / DSM 2053...	[more]

BLAST of Carg00552 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3B2T0\|A0A1S3B2T0_CUCME	7.6e-100	93.68	UPF0548 protein At2g17695 OS=Cucumis melo OX=3656 GN=LOC103485173 PE=4 SV=1	[more]
tr\|A0A0A0KKV8\|A0A0A0KKV8_CUCSA	2.5e-98	92.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G507400 PE=4 SV=1	[more]
tr\|A0A251ND12\|A0A251ND12_PRUPE	1.1e-79	75.26	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G176600 PE=4 SV=1	[more]
tr\|M5W4V4\|M5W4V4_PRUPE	1.1e-79	75.26	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa023767mg PE=4 SV=1	[more]
tr\|A0A2I4GPN5\|A0A2I4GPN5_9ROSI	6.3e-78	74.87	UPF0548 protein At2g17695 OS=Juglans regia OX=51240 GN=LOC109009713 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR018960	DUF1990

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg00552-RA	Carg00552-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018960	Domain of unknown function DUF1990	PFAM	PF09348	DUF1990	coord: 32..182 e-value: 1.4E-40 score: 138.8
None	No IPR available	PANTHER	PTHR34202:SF1	UPF0548 PROTEIN	coord: 6..190
None	No IPR available	PANTHER	PTHR34202	FAMILY NOT NAMED	coord: 6..190

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg00552	Cla014329	Watermelon (97103) v1	carwmB0407
Carg00552	Csa6G507400	Cucumber (Chinese Long) v2	carcuB0441
Carg00552	MELO3C007951	Melon (DHL92) v3.5.1	carmeB0414
Carg00552	ClCG01G020680	Watermelon (Charleston Gray)	carwcgB0397
Carg00552	CSPI06G32240	Wild cucumber (PI 183967)	carcpiB0446
Carg00552	Cucsa.044030	Cucumber (Gy14) v1	carcgyB0466
Carg00552	CmaCh03G006430	Cucurbita maxima (Rimu)	carcmaB0567
Carg00552	CmoCh03G006700	Cucurbita moschata (Rifu)	carcmoB0551
Carg00552	Lsi01G005560	Bottle gourd (USVL1VR-Ls)	carlsiB364
Carg00552	MELO3C007951.2	Melon (DHL92) v3.6.1	carmedB0418
Carg00552	CsaV3_6G047600	Cucumber (Chinese Long) v3	carcucB0442
Carg00552	Cla97C01G020180	Watermelon (97103) v2	carwmbB0426
Carg00552	Bhi03G000591	Wax gourd	carwgoB0488

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg00552	Melon (DHL92) v3.6.1	carmedB0414
Carg00552	Silver-seed gourd	carcarB189
Carg00552	Silver-seed gourd	carcarB370
Carg00552	Silver-seed gourd	carcarB422
Carg00552	Silver-seed gourd	carcarB425
Carg00552	Cucumber (Gy14) v2	carcgybB0413
Carg00552	Cucumber (Gy14) v2	carcgybB0418
Carg00552	Cucumber (Gy14) v1	carcgyB0472
Carg00552	Cucurbita maxima (Rimu)	carcmaB0560
Carg00552	Cucurbita maxima (Rimu)	carcmaB0564
Carg00552	Cucurbita maxima (Rimu)	carcmaB0571
Carg00552	Cucurbita moschata (Rifu)	carcmoB0547
Carg00552	Cucurbita moschata (Rifu)	carcmoB0549
Carg00552	Cucurbita moschata (Rifu)	carcmoB0554
Carg00552	Cucurbita pepo (Zucchini)	carcpeB0554
Carg00552	Cucurbita pepo (Zucchini)	carcpeB0559
Carg00552	Cucurbita pepo (Zucchini)	carcpeB0561
Carg00552	Cucurbita pepo (Zucchini)	carcpeB0563
Carg00552	Cucurbita pepo (Zucchini)	carcpeB0575
Carg00552	Wild cucumber (PI 183967)	carcpiB0441
Carg00552	Cucumber (Chinese Long) v3	carcucB0438
Carg00552	Bottle gourd (USVL1VR-Ls)	carlsiB368
Carg00552	Melon (DHL92) v3.5.1	carmeB0410
Carg00552	Watermelon (Charleston Gray)	carwcgB0395
Carg00552	Watermelon (97103) v1	carwmB0398
Carg00552	Watermelon (97103) v2	carwmbB0427