CmoCh03G006420 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh03G006420
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr03 : 5866128 .. 5866574 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTCGGATTGATGATCTACCATTTTCTAGGCCACCAAAACAAAAAGCTTCGCACCAAAAAGCTTCCACAGCATCTCATTTACAAGGGAAAGATCCCAACGATCGAATTAAGGGGTCATTTCCAGCACAAACAGCTCAGAAGTCCTCCAAAAGAAGTTTGAAGAATGAACCATCAGTAGCACTCCAGCAGCCCGAAAGGTCAAATTCGGATTCACTGCCAGATTCTTCATCTGCATCTGGGAATGAGTACCGTGTTTTAAGAAGGAAATATTTGCTCCTGGAGGAAGAGAGCTTTTCTCTGGGAACAGAACTGAAAGAAGTTGAAGATGAGGTGAAGGCCCTTGAAGAAGAAAAGCTTGGTCTCTTGGATGAACTCCTTGTTTTAGAAGGACTGATCGATCGCTCAGAACTGCAGCTTGCCCACTCAAATTTACCTCCACCTTAG

mRNA sequence

ATGTCTCGGATTGATGATCTACCATTTTCTAGGCCACCAAAACAAAAAGCTTCGCACCAAAAAGCTTCCACAGCATCTCATTTACAAGGGAAAGATCCCAACGATCGAATTAAGGGGTCATTTCCAGCACAAACAGCTCAGAAGTCCTCCAAAAGAAGTTTGAAGAATGAACCATCAGTAGCACTCCAGCAGCCCGAAAGGTCAAATTCGGATTCACTGCCAGATTCTTCATCTGCATCTGGGAATGAGTACCGTGTTTTAAGAAGGAAATATTTGCTCCTGGAGGAAGAGAGCTTTTCTCTGGGAACAGAACTGAAAGAAGTTGAAGATGAGGTGAAGGCCCTTGAAGAAGAAAAGCTTGGTCTCTTGGATGAACTCCTTGTTTTAGAAGGACTGATCGATCGCTCAGAACTGCAGCTTGCCCACTCAAATTTACCTCCACCTTAG

Coding sequence (CDS)

ATGTCTCGGATTGATGATCTACCATTTTCTAGGCCACCAAAACAAAAAGCTTCGCACCAAAAAGCTTCCACAGCATCTCATTTACAAGGGAAAGATCCCAACGATCGAATTAAGGGGTCATTTCCAGCACAAACAGCTCAGAAGTCCTCCAAAAGAAGTTTGAAGAATGAACCATCAGTAGCACTCCAGCAGCCCGAAAGGTCAAATTCGGATTCACTGCCAGATTCTTCATCTGCATCTGGGAATGAGTACCGTGTTTTAAGAAGGAAATATTTGCTCCTGGAGGAAGAGAGCTTTTCTCTGGGAACAGAACTGAAAGAAGTTGAAGATGAGGTGAAGGCCCTTGAAGAAGAAAAGCTTGGTCTCTTGGATGAACTCCTTGTTTTAGAAGGACTGATCGATCGCTCAGAACTGCAGCTTGCCCACTCAAATTTACCTCCACCTTAG

Homology

[Close]

BLAST of CmoCh03G006420 vs. TrEMBL
Match: A0A0A0KMU4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G510240 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 1.3e-61
Identity = 133/146 (91.10%), Postives = 137/146 (93.84%), Query Frame = 1


Query: 1   MSRIDDLPFSRPPKQKASHQKASTASHLQGKDPNDRIKGSFPAQTAQKSSKRSLKNEPSV 60
           MSRIDDLP+SRPPKQKA HQKASTASH+Q KDP+DRIKGSFPAQTAQK+SKRSLKNEPSV
Sbjct: 1   MSRIDDLPYSRPPKQKALHQKASTASHVQVKDPSDRIKGSFPAQTAQKASKRSLKNEPSV 60

Query: 61  ALQQPERSNSDSLPDSSSASGNEYRVLRRKYLLLEEESFSLGTELKEVEDEVKALEEEKL 120
             QQPERSNSDSLPD SSASGNEYR LRRKYLLLEEESFSLG ELK VEDEVK LEEEKL
Sbjct: 61  VFQQPERSNSDSLPD-SSASGNEYRALRRKYLLLEEESFSLGAELKGVEDEVKTLEEEKL 120

Query: 121 GLLDELLVLEGLIDRSELQLAHSNLP 147
           GLLDELLVLEGLIDRSELQLAHSNLP
Sbjct: 121 GLLDELLVLEGLIDRSELQLAHSNLP 145

[Close]

BLAST of CmoCh03G006420 vs. TrEMBL
Match: A0A0D2LWF7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G086400 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.3e-29
Identity = 76/104 (73.08%), Postives = 91/104 (87.50%), Query Frame = 1


Query: 36  RIKGSFPAQTAQKSSKRSLKNEPSVALQQPERSNSDSLPDSSSASGNEYRVLRRKYLLLE 95
           +++GS P +T +K+SKR+ KNE S   QQPERSNSDSLPDSS+ SGNEYR LRRKYLLLE
Sbjct: 42  QVQGSVPLRTGKKTSKRNSKNEISPIFQQPERSNSDSLPDSST-SGNEYRALRRKYLLLE 101

Query: 96  EESFSLGTELKEVEDEVKALEEEKLGLLDELLVLEGLIDRSELQ 140
           EESF+LG ELK+VEDEVKALE+EKL LLD+L+VLEGL+D SE+Q
Sbjct: 102 EESFTLGKELKDVEDEVKALEDEKLALLDQLVVLEGLMDPSEMQ 144

[Close]

BLAST of CmoCh03G006420 vs. TrEMBL
Match: A0A067JZC4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24287 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 2.9e-29
Identity = 84/131 (64.12%), Postives = 100/131 (76.34%), Query Frame = 1


Query: 6   DLPFSRPPKQKASHQKASTASHLQGKDPNDRIKGSFPAQTAQKSSKRSLKNEPSVALQQP 65
           D+  S+P K+K    +AS  S LQG D  +  +   P +T+QK+S+R+LKNE S  +QQ 
Sbjct: 11  DITKSKPHKKKVPASRASLIS-LQGNDLREVKQVQGPLRTSQKASRRNLKNEGSPLIQQQ 70

Query: 66  ERSNSDSLPDSSSASGNEYRVLRRKYLLLEEESFSLGTELKEVEDEVKALEEEKLGLLDE 125
           ERSNSDSLPDSS+ SGNEYR LRRKYLLLEEESF LG ELK VEDEVK LE+EKL LLD+
Sbjct: 71  ERSNSDSLPDSST-SGNEYRALRRKYLLLEEESFGLGKELKVVEDEVKTLEDEKLALLDQ 130

Query: 126 LLVLEGLIDRS 137
           L+VLEGLID S
Sbjct: 131 LVVLEGLIDPS 139

[Close]

BLAST of CmoCh03G006420 vs. TrEMBL
Match: B9SRB7_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0613720 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.1e-28
Identity = 84/129 (65.12%), Postives = 98/129 (75.97%), Query Frame = 1


Query: 10  SRPPKQKASHQKASTASHLQGKDPNDRIKGSFPAQTAQKSSKRSLKNEPSVALQQPERSN 69
           S+P K+K S  +A+    LQG D  +      P +T QK+SKR+LKNE S  +QQ ERSN
Sbjct: 15  SKPRKKKVSTSRAALIP-LQGNDVREFHLVQAPLRTNQKASKRNLKNEGSPMIQQQERSN 74

Query: 70  SDSLPDSSSASGNEYRVLRRKYLLLEEESFSLGTELKEVEDEVKALEEEKLGLLDELLVL 129
           SDSLPDSS+ SGNEYR LRRKYLLLEEESF LG ELK VEDEVK LE+EKL LLD+L+VL
Sbjct: 75  SDSLPDSST-SGNEYRALRRKYLLLEEESFGLGRELKVVEDEVKTLEDEKLALLDKLVVL 134

Query: 130 EGLIDRSEL 139
           EGLID SE+
Sbjct: 135 EGLIDPSEV 141

[Close]

BLAST of CmoCh03G006420 vs. TrEMBL
Match: A0A0D2SFT8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G185900 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.5e-28
Identity = 86/141 (60.99%), Postives = 106/141 (75.18%), Query Frame = 1


Query: 4   IDDLPFSRPPKQ----KASHQKAST-ASHLQGKDPNDRIKGSFPAQTAQKSSKRSLKNEP 63
           + D P   P +Q    K+  +K+ST  S L   + ND  K S P++T +K+SKR+ K E 
Sbjct: 1   MQDHPRMPPSEQGLNPKSRKKKSSTNKSALLPIERND-FKESVPSKTGKKTSKRNSKKEM 60

Query: 64  SVALQQPERSNSDSLPDSSSASGNEYRVLRRKYLLLEEESFSLGTELKEVEDEVKALEEE 123
           S   QQPERSNSDSLP+SS+ SGNEYR LRRKYLLLEEESF++G E+KEVEDEVKALE+E
Sbjct: 61  SPVFQQPERSNSDSLPESST-SGNEYRALRRKYLLLEEESFAMGKEMKEVEDEVKALEDE 120

Query: 124 KLGLLDELLVLEGLIDRSELQ 140
           KL LLD+L+VLEGLID SE+Q
Sbjct: 121 KLALLDQLVVLEGLIDPSEMQ 139

[Close]

BLAST of CmoCh03G006420 vs. TAIR10
Match: AT3G51500.1 (AT3G51500.1 unknown protein)

HSP 1 Score: 89.4 bits (220), Expect = 2.1e-18
Identity = 61/123 (49.59%), Postives = 76/123 (61.79%), Query Frame = 1


Query: 12  PPKQKASHQKASTASHLQGKDPNDRIKGSFPAQTAQKSSKRSLKNEPSVALQQPERSNSD 71
           PP  +A   K  T      K P  ++    P +  +K S RS  N+      Q E S   
Sbjct: 7   PPFSEAKRMKIPTP-----KQPLTQL----PPRIGKKVSNRSKSNQVHAISHQLEMS--- 66

Query: 72  SLPDSSSASGNEYRVLRRKYLLLEEESFSLGTELKEVEDEVKALEEEKLGLLDELLVLEG 131
             P+S S+ GNEYR LRRKYLLLEE+SF+L  ELKE EDEVKALE+EKL LLD+L+V+EG
Sbjct: 67  --PNSDSSPGNEYRALRRKYLLLEEDSFALERELKEAEDEVKALEDEKLELLDKLVVMEG 115

Query: 132 LID 135
           L+D
Sbjct: 127 LVD 115

[Close]

BLAST of CmoCh03G006420 vs. NCBI nr
Match: gi|659080706|ref|XP_008440937.1| (PREDICTED: uncharacterized protein LOC103485204 [Cucumis melo])

HSP 1 Score: 249.6 bits (636), Expect = 3.4e-63
Identity = 133/146 (91.10%), Postives = 139/146 (95.21%), Query Frame = 1


Query: 1   MSRIDDLPFSRPPKQKASHQKASTASHLQGKDPNDRIKGSFPAQTAQKSSKRSLKNEPSV 60
           MSRIDDLP+SRPPKQKA HQKASTASHLQ KDP++RIKGSFPAQTAQK+SKRSLKNEPS+
Sbjct: 1   MSRIDDLPYSRPPKQKALHQKASTASHLQLKDPSNRIKGSFPAQTAQKASKRSLKNEPSI 60

Query: 61  ALQQPERSNSDSLPDSSSASGNEYRVLRRKYLLLEEESFSLGTELKEVEDEVKALEEEKL 120
             QQPERSNSDSLPDSSSASGNEYR LRRKYLLLEEESF+LG ELKEVEDEVK LEEEKL
Sbjct: 61  VFQQPERSNSDSLPDSSSASGNEYRALRRKYLLLEEESFTLGAELKEVEDEVKTLEEEKL 120

Query: 121 GLLDELLVLEGLIDRSELQLAHSNLP 147
           GLLDELLVLEGLIDRSELQLAHSNLP
Sbjct: 121 GLLDELLVLEGLIDRSELQLAHSNLP 146

[Close]

BLAST of CmoCh03G006420 vs. NCBI nr
Match: gi|778719986|ref|XP_011658091.1| (PREDICTED: uncharacterized protein LOC101212199 [Cucumis sativus])

HSP 1 Score: 243.8 bits (621), Expect = 1.9e-61
Identity = 133/146 (91.10%), Postives = 137/146 (93.84%), Query Frame = 1


Query: 1   MSRIDDLPFSRPPKQKASHQKASTASHLQGKDPNDRIKGSFPAQTAQKSSKRSLKNEPSV 60
           MSRIDDLP+SRPPKQKA HQKASTASH+Q KDP+DRIKGSFPAQTAQK+SKRSLKNEPSV
Sbjct: 1   MSRIDDLPYSRPPKQKALHQKASTASHVQVKDPSDRIKGSFPAQTAQKASKRSLKNEPSV 60

Query: 61  ALQQPERSNSDSLPDSSSASGNEYRVLRRKYLLLEEESFSLGTELKEVEDEVKALEEEKL 120
             QQPERSNSDSLPD SSASGNEYR LRRKYLLLEEESFSLG ELK VEDEVK LEEEKL
Sbjct: 61  VFQQPERSNSDSLPD-SSASGNEYRALRRKYLLLEEESFSLGAELKGVEDEVKTLEEEKL 120

Query: 121 GLLDELLVLEGLIDRSELQLAHSNLP 147
           GLLDELLVLEGLIDRSELQLAHSNLP
Sbjct: 121 GLLDELLVLEGLIDRSELQLAHSNLP 145

[Close]

BLAST of CmoCh03G006420 vs. NCBI nr
Match: gi|823122589|ref|XP_012471731.1| (PREDICTED: uncharacterized protein LOC105789062 [Gossypium raimondii])

HSP 1 Score: 137.5 bits (345), Expect = 1.9e-29
Identity = 76/104 (73.08%), Postives = 91/104 (87.50%), Query Frame = 1


Query: 36  RIKGSFPAQTAQKSSKRSLKNEPSVALQQPERSNSDSLPDSSSASGNEYRVLRRKYLLLE 95
           +++GS P +T +K+SKR+ KNE S   QQPERSNSDSLPDSS+ SGNEYR LRRKYLLLE
Sbjct: 42  QVQGSVPLRTGKKTSKRNSKNEISPIFQQPERSNSDSLPDSST-SGNEYRALRRKYLLLE 101

Query: 96  EESFSLGTELKEVEDEVKALEEEKLGLLDELLVLEGLIDRSELQ 140
           EESF+LG ELK+VEDEVKALE+EKL LLD+L+VLEGL+D SE+Q
Sbjct: 102 EESFTLGKELKDVEDEVKALEDEKLALLDQLVVLEGLMDPSEMQ 144

[Close]

BLAST of CmoCh03G006420 vs. NCBI nr
Match: gi|802748731|ref|XP_012087564.1| (PREDICTED: uncharacterized protein LOC105646330 [Jatropha curcas])

HSP 1 Score: 136.3 bits (342), Expect = 4.2e-29
Identity = 84/131 (64.12%), Postives = 100/131 (76.34%), Query Frame = 1


Query: 6   DLPFSRPPKQKASHQKASTASHLQGKDPNDRIKGSFPAQTAQKSSKRSLKNEPSVALQQP 65
           D+  S+P K+K    +AS  S LQG D  +  +   P +T+QK+S+R+LKNE S  +QQ 
Sbjct: 11  DITKSKPHKKKVPASRASLIS-LQGNDLREVKQVQGPLRTSQKASRRNLKNEGSPLIQQQ 70

Query: 66  ERSNSDSLPDSSSASGNEYRVLRRKYLLLEEESFSLGTELKEVEDEVKALEEEKLGLLDE 125
           ERSNSDSLPDSS+ SGNEYR LRRKYLLLEEESF LG ELK VEDEVK LE+EKL LLD+
Sbjct: 71  ERSNSDSLPDSST-SGNEYRALRRKYLLLEEESFGLGKELKVVEDEVKTLEDEKLALLDQ 130

Query: 126 LLVLEGLIDRS 137
           L+VLEGLID S
Sbjct: 131 LVVLEGLIDPS 139

[Close]

BLAST of CmoCh03G006420 vs. NCBI nr
Match: gi|223532038|gb|EEF33848.1| (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 134.4 bits (337), Expect = 1.6e-28
Identity = 84/129 (65.12%), Postives = 98/129 (75.97%), Query Frame = 1


Query: 10  SRPPKQKASHQKASTASHLQGKDPNDRIKGSFPAQTAQKSSKRSLKNEPSVALQQPERSN 69
           S+P K+K S  +A+    LQG D  +      P +T QK+SKR+LKNE S  +QQ ERSN
Sbjct: 15  SKPRKKKVSTSRAALIP-LQGNDVREFHLVQAPLRTNQKASKRNLKNEGSPMIQQQERSN 74

Query: 70  SDSLPDSSSASGNEYRVLRRKYLLLEEESFSLGTELKEVEDEVKALEEEKLGLLDELLVL 129
           SDSLPDSS+ SGNEYR LRRKYLLLEEESF LG ELK VEDEVK LE+EKL LLD+L+VL
Sbjct: 75  SDSLPDSST-SGNEYRALRRKYLLLEEESFGLGRELKVVEDEVKTLEDEKLALLDKLVVL 134

Query: 130 EGLIDRSEL 139
           EGLID SE+
Sbjct: 135 EGLIDPSEV 141

The following BLAST results are available for this feature:

BLAST of CmoCh03G006420 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh03G006420 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KMU4_CUCSA	1.3e-61	91.10	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G510240 PE=4 SV=1	[more]
A0A0D2LWF7_GOSRA	1.3e-29	73.08	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G086400 PE=4 SV=1	[more]
A0A067JZC4_JATCU	2.9e-29	64.12	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24287 PE=4 SV=1	[more]
B9SRB7_RICCO	1.1e-28	65.12	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0613720 PE=4 SV=1	[more]
A0A0D2SFT8_GOSRA	1.5e-28	60.99	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G185900 PE=4 SV=1	[more]

BLAST of CmoCh03G006420 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G51500.1	2.1e-18	49.59	unknown protein	[more]

BLAST of CmoCh03G006420 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659080706\|ref\|XP_008440937.1\|	3.4e-63	91.10	PREDICTED: uncharacterized protein LOC103485204 [Cucumis melo]	[more]
gi\|778719986\|ref\|XP_011658091.1\|	1.9e-61	91.10	PREDICTED: uncharacterized protein LOC101212199 [Cucumis sativus]	[more]
gi\|823122589\|ref\|XP_012471731.1\|	1.9e-29	73.08	PREDICTED: uncharacterized protein LOC105789062 [Gossypium raimondii]	[more]
gi\|802748731\|ref\|XP_012087564.1\|	4.2e-29	64.12	PREDICTED: uncharacterized protein LOC105646330 [Jatropha curcas]	[more]
gi\|223532038\|gb\|EEF33848.1\|	1.6e-28	65.12	conserved hypothetical protein [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh03G006420.1	CmoCh03G006420.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 98..125 scor
None	No IPR available	PANTHER	PTHR37740	FAMILY NOT NAMED	coord: 1..144 score: 6.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh03G006420	Cucsa.044360	Cucumber (Gy14) v1	cgycmoB0042
CmoCh03G006420	CmaCh03G006130	Cucurbita maxima (Rimu)	cmacmoB653
CmoCh03G006420	Cla014363	Watermelon (97103) v1	cmowmB623
CmoCh03G006420	Csa6G510240	Cucumber (Chinese Long) v2	cmocuB670
CmoCh03G006420	MELO3C007985	Melon (DHL92) v3.5.1	cmomeB605
CmoCh03G006420	CSPI06G32560	Wild cucumber (PI 183967)	cmocpiB681
CmoCh03G006420	Cp4.1LG10g10470	Cucurbita pepo (Zucchini)	cmocpeB606
CmoCh03G006420	MELO3C007985.2	Melon (DHL92) v3.6.1	cmomedB694
CmoCh03G006420	CsaV3_6G047960	Cucumber (Chinese Long) v3	cmocucB0793
CmoCh03G006420	Cla97C01G020560	Watermelon (97103) v2	cmowmbB642
CmoCh03G006420	Bhi03G000555	Wax gourd	cmowgoB0781
CmoCh03G006420	Carg00530	Silver-seed gourd	carcmoB0551

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh03G006420	Cucurbita moschata (Rifu)	cmocmoB455
CmoCh03G006420	Cucurbita maxima (Rimu)	cmacmoB858
CmoCh03G006420	Watermelon (Charleston Gray)	cmowcgB575
CmoCh03G006420	Cucurbita pepo (Zucchini)	cmocpeB624
CmoCh03G006420	Bottle gourd (USVL1VR-Ls)	cmolsiB582
CmoCh03G006420	Cucumber (Gy14) v2	cgybcmoB811
CmoCh03G006420	Silver-seed gourd	carcmoB0886