Carg00530 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg00530
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Lectin-domain containing receptor kinase
Location	Cucurbita_argyrosperma_scaffold_014 : 199699 .. 200145 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTCGGATTGATGATTTACCATATTCTAGGCCATCAAAACAAAAAGCTTCGCACCAAAAAGCTTCCACAGCATCTCATTTACAAGGGAAAGATCCCAACGATCGAATTAAGGGGTCTTTTCCAGCACAAACAACTCAGAAGTCCTCCAAAAGAAGTTTGACGAATGAACCATCAGTAGCGCTCCAGCAGCCCGAAAGGTCGAATTCGGATTCGCTGCCGGATTCTTCATCTGCATCTGGGAATGAGTACCGTGTTTTAAGAAGGAAATATTTGCTCCTGGAGGAAGAGAGCTTTTCCCTGGGAACAGAACTTAAAGAAGTTGAAGATGAGGTGAAGGCCCTTGAAGAAGAAAAGCTTGGTCTCTTGGATGAACTCCTTGTTTTAGAAGGACTGATCGATCGCTCAGAACTGCAGCTTGCCCACTCAAATTTAACTCCACCTTAG

mRNA sequence

ATGTCTCGGATTGATGATTTACCATATTCTAGGCCATCAAAACAAAAAGCTTCGCACCAAAAAGCTTCCACAGCATCTCATTTACAAGGGAAAGATCCCAACGATCGAATTAAGGGGTCTTTTCCAGCACAAACAACTCAGAAGTCCTCCAAAAGAAGTTTGACGAATGAACCATCAGTAGCGCTCCAGCAGCCCGAAAGGTCGAATTCGGATTCGCTGCCGGATTCTTCATCTGCATCTGGGAATGAGTACCGTGTTTTAAGAAGGAAATATTTGCTCCTGGAGGAAGAGAGCTTTTCCCTGGGAACAGAACTTAAAGAAGTTGAAGATGAGGTGAAGGCCCTTGAAGAAGAAAAGCTTGGTCTCTTGGATGAACTCCTTGTTTTAGAAGGACTGATCGATCGCTCAGAACTGCAGCTTGCCCACTCAAATTTAACTCCACCTTAG

Coding sequence (CDS)

ATGTCTCGGATTGATGATTTACCATATTCTAGGCCATCAAAACAAAAAGCTTCGCACCAAAAAGCTTCCACAGCATCTCATTTACAAGGGAAAGATCCCAACGATCGAATTAAGGGGTCTTTTCCAGCACAAACAACTCAGAAGTCCTCCAAAAGAAGTTTGACGAATGAACCATCAGTAGCGCTCCAGCAGCCCGAAAGGTCGAATTCGGATTCGCTGCCGGATTCTTCATCTGCATCTGGGAATGAGTACCGTGTTTTAAGAAGGAAATATTTGCTCCTGGAGGAAGAGAGCTTTTCCCTGGGAACAGAACTTAAAGAAGTTGAAGATGAGGTGAAGGCCCTTGAAGAAGAAAAGCTTGGTCTCTTGGATGAACTCCTTGTTTTAGAAGGACTGATCGATCGCTCAGAACTGCAGCTTGCCCACTCAAATTTAACTCCACCTTAG

Protein sequence

MSRIDDLPYSRPSKQKASHQKASTASHLQGKDPNDRIKGSFPAQTTQKSSKRSLTNEPSVALQQPERSNSDSLPDSSSASGNEYRVLRRKYLLLEEESFSLGTELKEVEDEVKALEEEKLGLLDELLVLEGLIDRSELQLAHSNLTPP

Homology

[Close]

BLAST of Carg00530 vs. NCBI nr
Match: XP_022978374.1 (uncharacterized protein LOC111478385 [Cucurbita maxima])

HSP 1 Score: 198.4 bits (503), Expect = 1.8e-47
Identity = 144/148 (97.30%), Postives = 144/148 (97.30%), Query Frame = 0


Query: 1   MSRIDDLPYSRPSKQKASHQKASTASHLQGKDPNDRIKGSFPAQTTQKSSKRSLTNEPSV 60
           MSRIDDLPYSRP KQKASH KASTASHLQGKDPNDRIKGSFPAQTTQKSSKRSL NEPSV
Sbjct: 1   MSRIDDLPYSRPPKQKASHPKASTASHLQGKDPNDRIKGSFPAQTTQKSSKRSLKNEPSV 60

Query: 61  ALQQPERSNSDSLPDSSSASGNEYRVLRRKYLLLXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           ALQQPERSNSDSLPDSSSASGNEYRVLRRKYLLLXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  ALQQPERSNSDSLPDSSSASGNEYRVLRRKYLLLXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXVLEGLIDRSELQLAHSNLTPP 149
           XXXXXXXVLEGLIDRSELQLAHSNL PP
Sbjct: 121 XXXXXXXVLEGLIDRSELQLAHSNLPPP 148

[Close]

BLAST of Carg00530 vs. NCBI nr
Match: XP_023545100.1 (uncharacterized protein LOC111804503 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 198.4 bits (503), Expect = 1.8e-47
Identity = 144/148 (97.30%), Postives = 144/148 (97.30%), Query Frame = 0


Query: 1   MSRIDDLPYSRPSKQKASHQKASTASHLQGKDPNDRIKGSFPAQTTQKSSKRSLTNEPSV 60
           MSRIDDLPYSRP KQKASHQKASTASHLQGKDPNDRIKGSFPAQT QKSSKRSL NEPSV
Sbjct: 1   MSRIDDLPYSRPPKQKASHQKASTASHLQGKDPNDRIKGSFPAQTPQKSSKRSLKNEPSV 60

Query: 61  ALQQPERSNSDSLPDSSSASGNEYRVLRRKYLLLXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           ALQQPERSNSDSLPDSSSASGNEYRVLRRKYLLLXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  ALQQPERSNSDSLPDSSSASGNEYRVLRRKYLLLXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXVLEGLIDRSELQLAHSNLTPP 149
           XXXXXXXVLEGLIDRSELQLAHSNL PP
Sbjct: 121 XXXXXXXVLEGLIDRSELQLAHSNLPPP 148

[Close]

BLAST of Carg00530 vs. NCBI nr
Match: XP_022950616.1 (uncharacterized protein LOC111453661 [Cucurbita moschata])

HSP 1 Score: 197.2 bits (500), Expect = 3.9e-47
Identity = 143/148 (96.62%), Postives = 144/148 (97.30%), Query Frame = 0


Query: 1   MSRIDDLPYSRPSKQKASHQKASTASHLQGKDPNDRIKGSFPAQTTQKSSKRSLTNEPSV 60
           MSRIDDLP+SRP KQKASHQKASTASHLQGKDPNDRIKGSFPAQT QKSSKRSL NEPSV
Sbjct: 1   MSRIDDLPFSRPPKQKASHQKASTASHLQGKDPNDRIKGSFPAQTAQKSSKRSLKNEPSV 60

Query: 61  ALQQPERSNSDSLPDSSSASGNEYRVLRRKYLLLXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           ALQQPERSNSDSLPDSSSASGNEYRVLRRKYLLLXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  ALQQPERSNSDSLPDSSSASGNEYRVLRRKYLLLXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXVLEGLIDRSELQLAHSNLTPP 149
           XXXXXXXVLEGLIDRSELQLAHSNL PP
Sbjct: 121 XXXXXXXVLEGLIDRSELQLAHSNLPPP 148

[Close]

BLAST of Carg00530 vs. NCBI nr
Match: XP_016899190.1 (PREDICTED: uncharacterized protein LOC103485204 [Cucumis melo])

HSP 1 Score: 177.6 bits (449), Expect = 3.2e-41
Identity = 113/145 (77.93%), Postives = 117/145 (80.69%), Query Frame = 0


Query: 1   MSRIDDLPYSRPSKQKASHQKASTASHLQGKDPNDRIKGSFPAQTTQKSSKRSLTNEPSV 60
           MSRIDDLPYSRP KQKA HQKASTASHLQ KDP++RIKGSFPAQT QK+SKRSL NEPS+
Sbjct: 1   MSRIDDLPYSRPPKQKALHQKASTASHLQLKDPSNRIKGSFPAQTAQKASKRSLKNEPSI 60

Query: 61  ALQQPERSNSDSLPDSSSASGNEYRVLRRKYLLLXXXXXXXXXXXXXXXXXXXXXXXXXX 120
             QQPERSNSDSLPDSSSASGNEYR LRRKYLLL              XXXXXXXXXXXX
Sbjct: 61  VFQQPERSNSDSLPDSSSASGNEYRALRRKYLLLEEESFTLGAELKEVXXXXXXXXXXXX 120

Query: 121 XXXXXXXVLEGLIDRSELQLAHSNL 146
           X      VLEGLIDRSELQLAHSNL
Sbjct: 121 XLLDELLVLEGLIDRSELQLAHSNL 145

[Close]

BLAST of Carg00530 vs. NCBI nr
Match: XP_011658091.1 (PREDICTED: uncharacterized protein LOC101212199 [Cucumis sativus] >KGN49006.1 hypothetical protein Csa_6G510240 [Cucumis sativus])

HSP 1 Score: 172.9 bits (437), Expect = 7.9e-40
Identity = 117/145 (80.69%), Postives = 120/145 (82.76%), Query Frame = 0


Query: 1   MSRIDDLPYSRPSKQKASHQKASTASHLQGKDPNDRIKGSFPAQTTQKSSKRSLTNEPSV 60
           MSRIDDLPYSRP KQKA HQKASTASH+Q KDP+DRIKGSFPAQT QK+SKRSL NEPSV
Sbjct: 1   MSRIDDLPYSRPPKQKALHQKASTASHVQVKDPSDRIKGSFPAQTAQKASKRSLKNEPSV 60

Query: 61  ALQQPERSNSDSLPDSSSASGNEYRVLRRKYLLLXXXXXXXXXXXXXXXXXXXXXXXXXX 120
             QQPERSNSDSLPD SSASGNEYR LRRKYLLL              XXXXXXXXXXXX
Sbjct: 61  VFQQPERSNSDSLPD-SSASGNEYRALRRKYLLLEEESFSLGAELKGVXXXXXXXXXXXX 120

Query: 121 XXXXXXXVLEGLIDRSELQLAHSNL 146
           XXXXX  VLEGLIDRSELQLAHSNL
Sbjct: 121 XXXXXLLVLEGLIDRSELQLAHSNL 144

[Close]

BLAST of Carg00530 vs. TrEMBL
Match: tr|A0A1S4DU11|A0A1S4DU11_CUCME (uncharacterized protein LOC103485204 OS=Cucumis melo OX=3656 GN=LOC103485204 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 2.1e-41
Identity = 113/145 (77.93%), Postives = 117/145 (80.69%), Query Frame = 0


Query: 1   MSRIDDLPYSRPSKQKASHQKASTASHLQGKDPNDRIKGSFPAQTTQKSSKRSLTNEPSV 60
           MSRIDDLPYSRP KQKA HQKASTASHLQ KDP++RIKGSFPAQT QK+SKRSL NEPS+
Sbjct: 1   MSRIDDLPYSRPPKQKALHQKASTASHLQLKDPSNRIKGSFPAQTAQKASKRSLKNEPSI 60

Query: 61  ALQQPERSNSDSLPDSSSASGNEYRVLRRKYLLLXXXXXXXXXXXXXXXXXXXXXXXXXX 120
             QQPERSNSDSLPDSSSASGNEYR LRRKYLLL              XXXXXXXXXXXX
Sbjct: 61  VFQQPERSNSDSLPDSSSASGNEYRALRRKYLLLEEESFTLGAELKEVXXXXXXXXXXXX 120

Query: 121 XXXXXXXVLEGLIDRSELQLAHSNL 146
           X      VLEGLIDRSELQLAHSNL
Sbjct: 121 XLLDELLVLEGLIDRSELQLAHSNL 145

[Close]

BLAST of Carg00530 vs. TrEMBL
Match: tr|A0A0A0KMU4|A0A0A0KMU4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G510240 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 5.2e-40
Identity = 117/145 (80.69%), Postives = 120/145 (82.76%), Query Frame = 0


Query: 1   MSRIDDLPYSRPSKQKASHQKASTASHLQGKDPNDRIKGSFPAQTTQKSSKRSLTNEPSV 60
           MSRIDDLPYSRP KQKA HQKASTASH+Q KDP+DRIKGSFPAQT QK+SKRSL NEPSV
Sbjct: 1   MSRIDDLPYSRPPKQKALHQKASTASHVQVKDPSDRIKGSFPAQTAQKASKRSLKNEPSV 60

Query: 61  ALQQPERSNSDSLPDSSSASGNEYRVLRRKYLLLXXXXXXXXXXXXXXXXXXXXXXXXXX 120
             QQPERSNSDSLPD SSASGNEYR LRRKYLLL              XXXXXXXXXXXX
Sbjct: 61  VFQQPERSNSDSLPD-SSASGNEYRALRRKYLLLEEESFSLGAELKGVXXXXXXXXXXXX 120

Query: 121 XXXXXXXVLEGLIDRSELQLAHSNL 146
           XXXXX  VLEGLIDRSELQLAHSNL
Sbjct: 121 XXXXXLLVLEGLIDRSELQLAHSNL 144

[Close]

BLAST of Carg00530 vs. TrEMBL
Match: tr|A0A1R3JLI9|A0A1R3JLI9_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_15698 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 3.5e-12
Identity = 86/126 (68.25%), Postives = 100/126 (79.37%), Query Frame = 0


Query: 16  KASHQKASTASHLQGKDPN--DRIKGSFPAQTTQKSSKRSLTNEPSVALQQPERSNSDSL 75
           K   +K+ST + +   + N   +++GS P +T QK+SKR+L NE +   QQPERSNSDSL
Sbjct: 16  KQRKKKSSTKAPMFPSERNGAQQVQGSLPVRTGQKTSKRNLKNEMTPIFQQPERSNSDSL 75

Query: 76  PDSSSASGNEYRVLRRKYLLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLEGLI 135
           PDSSS SGNEYR LRRKYLL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  VLEGL+
Sbjct: 76  PDSSS-SGNEYRALRRKYLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVVLEGLV 135

Query: 136 DRSELQ 140
           D SE+Q
Sbjct: 136 DPSEMQ 140

[Close]

BLAST of Carg00530 vs. TrEMBL
Match: tr|B9SRB7|B9SRB7_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0613720 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 6.0e-12
Identity = 75/133 (56.39%), Postives = 88/133 (66.17%), Query Frame = 0


Query: 6   DLPYSRPSKQKASHQKASTASHLQGKDPNDRIKGSFPAQTTQKSSKRSLTNEPSVALQQP 65
           ++  S+P K+K S  +A+    LQG D  +      P +T QK+SKR+L NE S  +QQ 
Sbjct: 11  EITNSKPRKKKVSTSRAALIP-LQGNDVREFHLVQAPLRTNQKASKRNLKNEGSPMIQQQ 70

Query: 66  ERSNSDSLPDSSSASGNEYRVLRRKYLLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 125
           ERSNSDSLPDSS+ SGNEYR LRRKYLLL               XXXXXXXXXXXXXXXX
Sbjct: 71  ERSNSDSLPDSST-SGNEYRALRRKYLLLEEESFGLGRELKVVEXXXXXXXXXXXXXXXX 130

Query: 126 XXVLEGLIDRSEL 139
           X VLEGLID SE+
Sbjct: 131 XVVLEGLIDPSEV 141

[Close]

BLAST of Carg00530 vs. TrEMBL
Match: tr|A0A067JZC4|A0A067JZC4_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_24287 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 6.0e-12
Identity = 80/131 (61.07%), Postives = 93/131 (70.99%), Query Frame = 0


Query: 6   DLPYSRPSKQKASHQKASTASHLQGKDPNDRIKGSFPAQTTQKSSKRSLTNEPSVALQQP 65
           D+  S+P K+K    +AS  S LQG D  +  +   P +T+QK+S+R+L NE S  +QQ 
Sbjct: 11  DITKSKPHKKKVPASRASLIS-LQGNDLREVKQVQGPLRTSQKASRRNLKNEGSPLIQQQ 70

Query: 66  ERSNSDSLPDSSSASGNEYRVLRRKYLLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 125
           ERSNSDSLPDSS+ SGNEYR LRRKYLLL           XXXXXXXXXXXXXXXXXXXX
Sbjct: 71  ERSNSDSLPDSST-SGNEYRALRRKYLLLEEESFGLGKELXXXXXXXXXXXXXXXXXXXX 130

Query: 126 XXVLEGLIDRS 137
           XXVLEGLID S
Sbjct: 131 XXVLEGLIDPS 139

The following BLAST results are available for this feature:

BLAST of Carg00530 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022978374.1	1.8e-47	97.30	uncharacterized protein LOC111478385 [Cucurbita maxima]	[more]
XP_023545100.1	1.8e-47	97.30	uncharacterized protein LOC111804503 [Cucurbita pepo subsp. pepo]	[more]
XP_022950616.1	3.9e-47	96.62	uncharacterized protein LOC111453661 [Cucurbita moschata]	[more]
XP_016899190.1	3.2e-41	77.93	PREDICTED: uncharacterized protein LOC103485204 [Cucumis melo]	[more]
XP_011658091.1	7.9e-40	80.69	PREDICTED: uncharacterized protein LOC101212199 [Cucumis sativus] >KGN49006.1 hy...	[more]

BLAST of Carg00530 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg00530 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg00530 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4DU11\|A0A1S4DU11_CUCME	2.1e-41	77.93	uncharacterized protein LOC103485204 OS=Cucumis melo OX=3656 GN=LOC103485204 PE=...	[more]
tr\|A0A0A0KMU4\|A0A0A0KMU4_CUCSA	5.2e-40	80.69	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G510240 PE=4 SV=1	[more]
tr\|A0A1R3JLI9\|A0A1R3JLI9_9ROSI	3.5e-12	68.25	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_15698 PE=4 SV=1	[more]
tr\|B9SRB7\|B9SRB7_RICCO	6.0e-12	56.39	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0613720 PE=4 SV=1	[more]
tr\|A0A067JZC4\|A0A067JZC4_JATCU	6.0e-12	61.07	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_24287 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg00530-RA	Carg00530-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 98..125
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..81
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..30
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..81
None	No IPR available	PANTHER	PTHR37740	FAMILY NOT NAMED	coord: 5..139

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg00530	Cla014363	Watermelon (97103) v1	carwmB0407
Carg00530	Csa6G510240	Cucumber (Chinese Long) v2	carcuB0441
Carg00530	MELO3C007985	Melon (DHL92) v3.5.1	carmeB0414
Carg00530	CSPI06G32560	Wild cucumber (PI 183967)	carcpiB0446
Carg00530	Cucsa.044360	Cucumber (Gy14) v1	carcgyB0466
Carg00530	CmaCh03G006130	Cucurbita maxima (Rimu)	carcmaB0567
Carg00530	CmoCh03G006420	Cucurbita moschata (Rifu)	carcmoB0551
Carg00530	Cp4.1LG10g10470	Cucurbita pepo (Zucchini)	carcpeB0554
Carg00530	MELO3C007985.2	Melon (DHL92) v3.6.1	carmedB0418
Carg00530	CsaV3_6G047960	Cucumber (Chinese Long) v3	carcucB0442
Carg00530	Cla97C01G020560	Watermelon (97103) v2	carwmbB0426
Carg00530	Bhi03G000555	Wax gourd	carwgoB0488

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg00530	Silver-seed gourd	carcarB425
Carg00530	Cucumber (Gy14) v2	carcgybB0418
Carg00530	Cucurbita maxima (Rimu)	carcmaB0571
Carg00530	Cucurbita moschata (Rifu)	carcmoB0554
Carg00530	Cucurbita pepo (Zucchini)	carcpeB0563
Carg00530	Bottle gourd (USVL1VR-Ls)	carlsiB364
Carg00530	Watermelon (Charleston Gray)	carwcgB0397