Cla97C01G020560 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C01G020560
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
Location	Cla97Chr01 : 33160477 .. 33161025 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGCGGCTCTCAACCCTTACAGTTAATAACGACTAATTATCTGTTCTTTTGTACTTTTAATCTTTTGCATAGCATCAGCAGTGAGAAGCACAACCGCACAGCCATGTCTCGGATTGACGATTTACCATATTCTAGGCCACCAAAACAGAAAGCTTTGCACCAAAAAGCTTCCACAGCATCTCATGTACAAGTGAAAGATCCCAACGATCGAATTAAGGGGTCTTTTCCAGCACAAACAGCACAGAAGGCCTCCAAAAGAAGTTTGAAGAATGAACCATTTATAGCATTTCAGCACCCCGAAAGGTCGAATTCGGATTCTCTGCCTGATTCATCTGCATCTGGGAATGAGTACCGTGCCTTAAGAAGAAAATATCTACTCCTGGAGGAAGAGAGCTTTACTCTGGGAGCAGAACTGAAAGAAGTTGAAGATGAAGTGAAGACCCTAGAAGAAGAAAAGCTTGGTCTCTTGGATGAACTTCTTGTTTTAGAAGGACTAATCAATCGTTCAGAATTGCAGCTTGCCCAGTCAAATTTACCACAACTTTAG

mRNA sequence

ATGTGCGGCTCTCAACCCTTACAGTTAATAACGACTAATTATCTGTTCTTTTGTACTTTTAATCTTTTGCATAGCATCAGCAGTGAGAAGCACAACCGCACAGCCATGTCTCGGATTGACGATTTACCATATTCTAGGCCACCAAAACAGAAAGCTTTGCACCAAAAAGCTTCCACAGCATCTCATGTACAAGTGAAAGATCCCAACGATCGAATTAAGGGGTCTTTTCCAGCACAAACAGCACAGAAGGCCTCCAAAAGAAGTTTGAAGAATGAACCATTTATAGCATTTCAGCACCCCGAAAGGTCGAATTCGGATTCTCTGCCTGATTCATCTGCATCTGGGAATGAGTACCGTGCCTTAAGAAGAAAATATCTACTCCTGGAGGAAGAGAGCTTTACTCTGGGAGCAGAACTGAAAGAAGTTGAAGATGAAGTGAAGACCCTAGAAGAAGAAAAGCTTGGTCTCTTGGATGAACTTCTTGTTTTAGAAGGACTAATCAATCGTTCAGAATTGCAGCTTGCCCAGTCAAATTTACCACAACTTTAG

Coding sequence (CDS)

ATGTGCGGCTCTCAACCCTTACAGTTAATAACGACTAATTATCTGTTCTTTTGTACTTTTAATCTTTTGCATAGCATCAGCAGTGAGAAGCACAACCGCACAGCCATGTCTCGGATTGACGATTTACCATATTCTAGGCCACCAAAACAGAAAGCTTTGCACCAAAAAGCTTCCACAGCATCTCATGTACAAGTGAAAGATCCCAACGATCGAATTAAGGGGTCTTTTCCAGCACAAACAGCACAGAAGGCCTCCAAAAGAAGTTTGAAGAATGAACCATTTATAGCATTTCAGCACCCCGAAAGGTCGAATTCGGATTCTCTGCCTGATTCATCTGCATCTGGGAATGAGTACCGTGCCTTAAGAAGAAAATATCTACTCCTGGAGGAAGAGAGCTTTACTCTGGGAGCAGAACTGAAAGAAGTTGAAGATGAAGTGAAGACCCTAGAAGAAGAAAAGCTTGGTCTCTTGGATGAACTTCTTGTTTTAGAAGGACTAATCAATCGTTCAGAATTGCAGCTTGCCCAGTCAAATTTACCACAACTTTAG

Protein sequence

MCGSQPLQLITTNYLFFCTFNLLHSISSEKHNRTAMSRIDDLPYSRPPKQKALHQKASTASHVQVKDPNDRIKGSFPAQTAQKASKRSLKNEPFIAFQHPERSNSDSLPDSSASGNEYRALRRKYLLLEEESFTLGAELKEVEDEVKTLEEEKLGLLDELLVLEGLINRSELQLAQSNLPQL

Homology

[Close]

BLAST of Cla97C01G020560 vs. NCBI nr
Match: XP_016899190.1 (PREDICTED: uncharacterized protein LOC103485204 [Cucumis melo])

HSP 1 Score: 226.9 bits (577), Expect = 5.7e-56
Identity = 134/148 (90.54%), Postives = 139/148 (93.92%), Query Frame = 0


Query: 36  MSRIDDLPYSRPPKQKALHQKASTASHVQVKDPNDRIKGSFPAQTAQKASKRSLKNEPFI 95
           MSRIDDLPYSRPPKQKALHQKASTASH+Q+KDP++RIKGSFPAQTAQKASKRSLKNEP I
Sbjct: 1   MSRIDDLPYSRPPKQKALHQKASTASHLQLKDPSNRIKGSFPAQTAQKASKRSLKNEPSI 60

Query: 96  AFQHPERSNSDSLPD-SSASGNEYRALRRKYLLLEEESFTLGAELKEVEDXXXXXXXXXX 155
            FQ PERSNSDSLPD SSASGNEYRALRRKYLLLEEESFTLGAELKEV  XXXXXXXXXX
Sbjct: 61  VFQQPERSNSDSLPDSSSASGNEYRALRRKYLLLEEESFTLGAELKEVXXXXXXXXXXXX 120

Query: 156 GLLDELLVLEGLINRSELQLAQSNLPQL 183
            LLDELLVLEGLI+RSELQLA SNLP L
Sbjct: 121 XLLDELLVLEGLIDRSELQLAHSNLPHL 148

[Close]

BLAST of Cla97C01G020560 vs. NCBI nr
Match: XP_011658091.1 (PREDICTED: uncharacterized protein LOC101212199 [Cucumis sativus] >KGN49006.1 hypothetical protein Csa_6G510240 [Cucumis sativus])

HSP 1 Score: 222.6 bits (566), Expect = 1.1e-54
Identity = 130/146 (89.04%), Postives = 134/146 (91.78%), Query Frame = 0


Query: 36  MSRIDDLPYSRPPKQKALHQKASTASHVQVKDPNDRIKGSFPAQTAQKASKRSLKNEPFI 95
           MSRIDDLPYSRPPKQKALHQKASTASHVQVKDP+DRIKGSFPAQTAQKASKRSLKNEP +
Sbjct: 1   MSRIDDLPYSRPPKQKALHQKASTASHVQVKDPSDRIKGSFPAQTAQKASKRSLKNEPSV 60

Query: 96  AFQHPERSNSDSLPDSSASGNEYRALRRKYLLLEEESFTLGAELKEVEDXXXXXXXXXXG 155
            FQ PERSNSDSLPDSSASGNEYRALRRKYLLLEEESF+LGAELK V  XXXXXXXXXX 
Sbjct: 61  VFQQPERSNSDSLPDSSASGNEYRALRRKYLLLEEESFSLGAELKGVXXXXXXXXXXXXX 120

Query: 156 LLDELLVLEGLINRSELQLAQSNLPQ 182
               LLVLEGLI+RSELQLA SNLPQ
Sbjct: 121 XXXXLLVLEGLIDRSELQLAHSNLPQ 146

[Close]

BLAST of Cla97C01G020560 vs. NCBI nr
Match: XP_022950616.1 (uncharacterized protein LOC111453661 [Cucurbita moschata])

HSP 1 Score: 176.4 bits (446), Expect = 8.8e-41
Identity = 110/146 (75.34%), Postives = 115/146 (78.77%), Query Frame = 0


Query: 36  MSRIDDLPYSRPPKQKALHQKASTASHVQVKDPNDRIKGSFPAQTAQKASKRSLKNEPFI 95
           MSRIDDLP+SRPPKQKA HQKASTASH+Q KDPNDRIKGSFPAQTAQK+SKRSLKNEP +
Sbjct: 1   MSRIDDLPFSRPPKQKASHQKASTASHLQGKDPNDRIKGSFPAQTAQKSSKRSLKNEPSV 60

Query: 96  AFQHPERSNSDSLPD-SSASGNEYRALRRKYLLLEEESFTLGAELKEVEDXXXXXXXXXX 155
           A Q PERSNSDSLPD SSASGNEYR LRRKYLLL                XXXXXXXXXX
Sbjct: 61  ALQQPERSNSDSLPDSSSASGNEYRVLRRKYLLLXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 156 GLLDELLVLEGLINRSELQLAQSNLP 181
                  VLEGLI+RSELQLA SNLP
Sbjct: 121 XXXXXXXVLEGLIDRSELQLAHSNLP 146

[Close]

BLAST of Cla97C01G020560 vs. NCBI nr
Match: XP_023545100.1 (uncharacterized protein LOC111804503 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 176.0 bits (445), Expect = 1.1e-40
Identity = 110/146 (75.34%), Postives = 114/146 (78.08%), Query Frame = 0


Query: 36  MSRIDDLPYSRPPKQKALHQKASTASHVQVKDPNDRIKGSFPAQTAQKASKRSLKNEPFI 95
           MSRIDDLPYSRPPKQKA HQKASTASH+Q KDPNDRIKGSFPAQT QK+SKRSLKNEP +
Sbjct: 1   MSRIDDLPYSRPPKQKASHQKASTASHLQGKDPNDRIKGSFPAQTPQKSSKRSLKNEPSV 60

Query: 96  AFQHPERSNSDSLPD-SSASGNEYRALRRKYLLLEEESFTLGAELKEVEDXXXXXXXXXX 155
           A Q PERSNSDSLPD SSASGNEYR LRRKYLLL                XXXXXXXXXX
Sbjct: 61  ALQQPERSNSDSLPDSSSASGNEYRVLRRKYLLLXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 156 GLLDELLVLEGLINRSELQLAQSNLP 181
                  VLEGLI+RSELQLA SNLP
Sbjct: 121 XXXXXXXVLEGLIDRSELQLAHSNLP 146

[Close]

BLAST of Cla97C01G020560 vs. NCBI nr
Match: XP_022978374.1 (uncharacterized protein LOC111478385 [Cucurbita maxima])

HSP 1 Score: 174.1 bits (440), Expect = 4.4e-40
Identity = 109/146 (74.66%), Postives = 113/146 (77.40%), Query Frame = 0


Query: 36  MSRIDDLPYSRPPKQKALHQKASTASHVQVKDPNDRIKGSFPAQTAQKASKRSLKNEPFI 95
           MSRIDDLPYSRPPKQKA H KASTASH+Q KDPNDRIKGSFPAQT QK+SKRSLKNEP +
Sbjct: 1   MSRIDDLPYSRPPKQKASHPKASTASHLQGKDPNDRIKGSFPAQTTQKSSKRSLKNEPSV 60

Query: 96  AFQHPERSNSDSLPD-SSASGNEYRALRRKYLLLEEESFTLGAELKEVEDXXXXXXXXXX 155
           A Q PERSNSDSLPD SSASGNEYR LRRKYLLL                XXXXXXXXXX
Sbjct: 61  ALQQPERSNSDSLPDSSSASGNEYRVLRRKYLLLXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 156 GLLDELLVLEGLINRSELQLAQSNLP 181
                  VLEGLI+RSELQLA SNLP
Sbjct: 121 XXXXXXXVLEGLIDRSELQLAHSNLP 146

[Close]

BLAST of Cla97C01G020560 vs. TrEMBL
Match: tr|A0A1S4DU11|A0A1S4DU11_CUCME (uncharacterized protein LOC103485204 OS=Cucumis melo OX=3656 GN=LOC103485204 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 3.7e-56
Identity = 134/148 (90.54%), Postives = 139/148 (93.92%), Query Frame = 0


Query: 36  MSRIDDLPYSRPPKQKALHQKASTASHVQVKDPNDRIKGSFPAQTAQKASKRSLKNEPFI 95
           MSRIDDLPYSRPPKQKALHQKASTASH+Q+KDP++RIKGSFPAQTAQKASKRSLKNEP I
Sbjct: 1   MSRIDDLPYSRPPKQKALHQKASTASHLQLKDPSNRIKGSFPAQTAQKASKRSLKNEPSI 60

Query: 96  AFQHPERSNSDSLPD-SSASGNEYRALRRKYLLLEEESFTLGAELKEVEDXXXXXXXXXX 155
            FQ PERSNSDSLPD SSASGNEYRALRRKYLLLEEESFTLGAELKEV  XXXXXXXXXX
Sbjct: 61  VFQQPERSNSDSLPDSSSASGNEYRALRRKYLLLEEESFTLGAELKEVXXXXXXXXXXXX 120

Query: 156 GLLDELLVLEGLINRSELQLAQSNLPQL 183
            LLDELLVLEGLI+RSELQLA SNLP L
Sbjct: 121 XLLDELLVLEGLIDRSELQLAHSNLPHL 148

[Close]

BLAST of Cla97C01G020560 vs. TrEMBL
Match: tr|A0A0A0KMU4|A0A0A0KMU4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G510240 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 7.1e-55
Identity = 130/146 (89.04%), Postives = 134/146 (91.78%), Query Frame = 0


Query: 36  MSRIDDLPYSRPPKQKALHQKASTASHVQVKDPNDRIKGSFPAQTAQKASKRSLKNEPFI 95
           MSRIDDLPYSRPPKQKALHQKASTASHVQVKDP+DRIKGSFPAQTAQKASKRSLKNEP +
Sbjct: 1   MSRIDDLPYSRPPKQKALHQKASTASHVQVKDPSDRIKGSFPAQTAQKASKRSLKNEPSV 60

Query: 96  AFQHPERSNSDSLPDSSASGNEYRALRRKYLLLEEESFTLGAELKEVEDXXXXXXXXXXG 155
            FQ PERSNSDSLPDSSASGNEYRALRRKYLLLEEESF+LGAELK V  XXXXXXXXXX 
Sbjct: 61  VFQQPERSNSDSLPDSSASGNEYRALRRKYLLLEEESFSLGAELKGVXXXXXXXXXXXXX 120

Query: 156 LLDELLVLEGLINRSELQLAQSNLPQ 182
               LLVLEGLI+RSELQLA SNLPQ
Sbjct: 121 XXXXLLVLEGLIDRSELQLAHSNLPQ 146

[Close]

BLAST of Cla97C01G020560 vs. TrEMBL
Match: tr|W9REA9|W9REA9_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_002283 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 3.4e-25
Identity = 76/142 (53.52%), Postives = 91/142 (64.08%), Query Frame = 0


Query: 40  DDLPYSRPPKQKALHQKAS--TASHVQVKDPNDRIKGSFPAQTAQKASKRSLKNEPFIAF 99
           D++P  +P K+K   QKA         VK   D ++GS P +  QK SKR+L+NE     
Sbjct: 10  DEVPNHKPQKKKTSTQKAPMFQMRRHDVKAVKD-VQGSVPLKAGQKVSKRALRNEVSPMV 69

Query: 100 QHPERSNSDSLPDSSASGNEYRALRRKYLLLEEESFTLGAELKEVEDXXXXXXXXXXGLL 159
             PERSNSDSLP+SS SGNEYR+LRRKYLLLEEESFTLG +L+EVED           LL
Sbjct: 70  HQPERSNSDSLPNSSTSGNEYRSLRRKYLLLEEESFTLGRDLREVEDEVKSLEDEKHALL 129

Query: 160 DELLVLEGLINRSELQLAQSNL 180
           D L+VLEGLI+ SEL   Q  L
Sbjct: 130 DRLVVLEGLIDPSELLSQQGKL 150

[Close]

BLAST of Cla97C01G020560 vs. TrEMBL
Match: tr|A0A2R6R5Y8|A0A2R6R5Y8_ACTCH (Vacuolar protein sorting/targeting protein like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc10470 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 7.6e-25
Identity = 75/137 (54.74%), Postives = 86/137 (62.77%), Query Frame = 0


Query: 46  RPPKQKALHQKASTASHVQVKDPNDRIKGSFPAQTAQKASKRSLKNEPFIAFQHPERSNS 105
           +P K+K   QK ST            +    P Q+ +KASKR LKNE    FQ PE S S
Sbjct: 16  KPRKKKPSTQKGSTFQQGSNVKGFQEVLPPLPIQSVKKASKRVLKNEVNPLFQQPENSPS 75

Query: 106 DSLPDSSASGNEYRALRRKYLLLEEESFTLGAELKEVEDXXXXXXXXXXGLLDELLVLEG 165
           DSLPDSS SGNEYRALRRKYLLLEEESF LG+EL+EVED           LLD+L+VLEG
Sbjct: 76  DSLPDSSTSGNEYRALRRKYLLLEEESFGLGSELREVEDVVKTLEEEKLALLDDLVVLEG 135

Query: 166 LINRSELQLAQSNLPQL 183
           L++ SELQ     LP L
Sbjct: 136 LMDPSELQSQGKRLPLL 152

[Close]

BLAST of Cla97C01G020560 vs. TrEMBL
Match: tr|A0A061ENV2|A0A061ENV2_THECC (Uncharacterized protein isoform 2 OS=Theobroma cacao OX=3641 GN=TCM_019278 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.7e-24
Identity = 69/103 (66.99%), Postives = 80/103 (77.67%), Query Frame = 0


Query: 71  RIKGSFPAQTAQKASKRSLKNEPFIAFQHPERSNSDSLPDSSASGNEYRALRRKYLLLEE 130
           ++ GS P +T QK SKR+LK E    FQ PERSNSDS+PDSS SGNEYRALRRKYLLLEE
Sbjct: 42  QVLGSLPLRTGQKTSKRNLKKEISPIFQQPERSNSDSIPDSSTSGNEYRALRRKYLLLEE 101

Query: 131 ESFTLGAELKEVEDXXXXXXXXXXGLLDELLVLEGLINRSELQ 174
           ESF LG ELK+V D     XXXX  LLD+L+VLEGL++ SE+Q
Sbjct: 102 ESFALGKELKDVVDEVKVLXXXXFALLDQLVVLEGLVDPSEMQ 144

The following BLAST results are available for this feature:

BLAST of Cla97C01G020560 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016899190.1	5.7e-56	90.54	PREDICTED: uncharacterized protein LOC103485204 [Cucumis melo]	[more]
XP_011658091.1	1.1e-54	89.04	PREDICTED: uncharacterized protein LOC101212199 [Cucumis sativus] >KGN49006.1 hy...	[more]
XP_022950616.1	8.8e-41	75.34	uncharacterized protein LOC111453661 [Cucurbita moschata]	[more]
XP_023545100.1	1.1e-40	75.34	uncharacterized protein LOC111804503 [Cucurbita pepo subsp. pepo]	[more]
XP_022978374.1	4.4e-40	74.66	uncharacterized protein LOC111478385 [Cucurbita maxima]	[more]

BLAST of Cla97C01G020560 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4DU11\|A0A1S4DU11_CUCME	3.7e-56	90.54	uncharacterized protein LOC103485204 OS=Cucumis melo OX=3656 GN=LOC103485204 PE=...	[more]
tr\|A0A0A0KMU4\|A0A0A0KMU4_CUCSA	7.1e-55	89.04	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G510240 PE=4 SV=1	[more]
tr\|W9REA9\|W9REA9_9ROSA	3.4e-25	53.52	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_002283 PE=4 SV=1	[more]
tr\|A0A2R6R5Y8\|A0A2R6R5Y8_ACTCH	7.6e-25	54.74	Vacuolar protein sorting/targeting protein like OS=Actinidia chinensis var. chin...	[more]
tr\|A0A061ENV2\|A0A061ENV2_THECC	1.7e-24	66.99	Uncharacterized protein isoform 2 OS=Theobroma cacao OX=3641 GN=TCM_019278 PE=4 ...	[more]

BLAST of Cla97C01G020560 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C01G020560 vs. TAIR10


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0005975	carbohydrate metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0046983	protein dimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C01G020560.1	Cla97C01G020560.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 132..159
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..90
None	No IPR available	PANTHER	PTHR37740	FAMILY NOT NAMED	coord: 37..173

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C01G020560	Cla014363	Watermelon (97103) v1	wmwmbB234
Cla97C01G020560	Csa6G510240	Cucumber (Chinese Long) v2	cuwmbB412
Cla97C01G020560	MELO3C007985	Melon (DHL92) v3.5.1	mewmbB513
Cla97C01G020560	CSPI06G32560	Wild cucumber (PI 183967)	cpiwmbB433
Cla97C01G020560	Cucsa.044360	Cucumber (Gy14) v1	cgywmbB017
Cla97C01G020560	CmaCh03G006130	Cucurbita maxima (Rimu)	cmawmbB670
Cla97C01G020560	CmoCh03G006420	Cucurbita moschata (Rifu)	cmowmbB642
Cla97C01G020560	MELO3C007985.2	Melon (DHL92) v3.6.1	medwmbB505
Cla97C01G020560	Carg00530	Silver-seed gourd	carwmbB0426
Cla97C01G020560	CsaV3_6G047960	Cucumber (Chinese Long) v3	cucwmbB430
Cla97C01G020560	Bhi03G000555	Wax gourd	wgowmbB402

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C01G020560	Silver-seed gourd	carwmbB0669
Cla97C01G020560	Cucumber (Gy14) v2	cgybwmbB394
Cla97C01G020560	Cucurbita maxima (Rimu)	cmawmbB875
Cla97C01G020560	Cucurbita moschata (Rifu)	cmowmbB849
Cla97C01G020560	Bottle gourd (USVL1VR-Ls)	lsiwmbB115
Cla97C01G020560	Melon (DHL92) v3.6.1	medwmbB411
Cla97C01G020560	Watermelon (Charleston Gray)	wcgwmbB089